Marivirga tractuosa DSM 4126 plasmid pFTRAC01, complete sequence.
Bacteria; Bacteroidota; Cytophagia; Cytophagales; Marivirgaceae; Marivirga.
Complete genome sequence of Marivirga tractuosa type strain (H-43)
Submitted (18-NOV-2010) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP002350.1.\nURL -- http://www.jgi.doe.gov\nJGI Project ID: 4085041\nSource DNA and organism available from Hans-Peter Klenk at the\nGerman Collection of Microorganisms and Cell Cultures (DSMZ)\n(hans-peter.klenk@dsmz.de)\nContacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)\n David Bruce (microbe@cuba.jgi-psf.org)\nWhole genome sequencing and draft assembly at JGI-PGF\nFinishing done by JGI-LANL\nAnnotation by JGI-ORNL and JGI-PGF\nThe JGI and collaborators endorse the principles for the\ndistribution and use of large scale sequencing data adopted by the\nlarger genome sequencing community and urge users of this data to\nfollow them. It is our intention to publish the work of this\nproject in a timely fashion and we welcome collaborative\ninteraction on the project and analysis.\n(http://www.genome.gov/page.cfm?pageID=10506376).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##MIGS-Data-START##\ninvestigation_type :: bacteria_archaea\nproject_name :: Marivirga tractuosa Lewin H43, DSM 4126\ncollection_date :: Missing\nlat_lon :: 12.250 109.199\ndepth :: Missing\nalt_elev :: Missing\ncountry :: Vietnam\nenvironment :: Missing\nnum_replicons :: 2\nref_biomaterial :: DSM 4126, ATCC 23168, IFO 15989, NBRC 15989,\n NCMB 1408\nbiotic_relationship :: Free living\ntrophic_level :: Missing\nrel_to_oxygen :: Missing\nisol_growth_condt :: 5360476\nsequencing_meth :: WGS\nassembly :: Newbler v. 2.3 (pre-release)\nfinishing_strategy :: Finished\nGOLD Stamp ID :: Gi03940\nType Strain :: Yes\nGreengenes ID :: 58628\nFunding Program :: DOE-GEBA 2007\nGene Calling Method :: IMG/ER 2.8\nIsolation Site :: beach sand from Nha Trang\nIsolation Comments :: isolated by RA Lewin\nTemperature Range :: Mesophile\nTemperature Optimum :: 30C\nGram Staining :: Gram-\nDiseases :: None\n##MIGS-Data-END##\n\n##Genome-Assembly-Data-START##\nFinishing Goal :: Finished\nCurrent Finishing Status :: Finished\nAssembly Method :: Newbler v. 2.3\nGenome Coverage :: 30x\nSequencing Technology :: Illumina, 454\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 10/05/2022 09:28:26\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 3,808\nCDSs (total) :: 3,761\nGenes (coding) :: 3,745\nCDSs (with protein) :: 3,745\nGenes (RNA) :: 47\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 38\nncRNAs :: 3\nPseudo Genes (total) :: 16\nCDSs (without protein) :: 16\nPseudo Genes (ambiguous residues) :: 0 of 16\nPseudo Genes (frameshifted) :: 7 of 16\nPseudo Genes (incomplete) :: 6 of 16\nPseudo Genes (internal stop) :: 3 of 16\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: protein motif:HMM:NF017524.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
MobC family plasmid mobilization relaxosome protein
COORDINATES: protein motif:HMM:NF015397.2
relaxase/mobilization nuclease domain-containing protein
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_020256439.1
type II toxin-antitoxin system HicA family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_020607553.1
type II toxin-antitoxin system HicB family antitoxin
COORDINATES: protein motif:HMM:NF013235.2