Zika virus, complete genome.
type: Entry
definition: Zika virus, complete genome.
sequence version: NC_012532.1
sequence date: 2019-08-01
sequence: sequence
division: VRL
label: NC_012532.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA485481
keyword: RefSeq
source: Zika virus
organism: Zika virus
taxonomy: Viruses; Riboviria; Flaviviridae; Flavivirus.
reference: 1
references: 17195954
reference: 2
references: 16223950
reference: 3
reference: 4
reference: 5
comment: REVIEWED REFSEQ: This record has been curated by NCBI staff. The\nreference sequence was derived from AY632535.\nMature peptides were annotated by RefSeq staff using the cleavage\nsites reported in Kuno and Chang, 2007 (PMID 17195954). Questions\nabout the annotation of this sequence should be directed to\ninfo@ncbi.nlm.nih.gov.\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000353
sequence length: 10794
topology: linear
so has quality: SO_0000987
location: 1..10794
location: region:1-10794:1
RO_0002162: 64320

NC_012532
type: RefSeq
SIO_000068: refseq

PRJNA485481
type: BioProject
SIO_000068: bioproject

1
title: Full-length sequencing and genomic characterization of Bagaza, Kedougou, and Zika viruses
author: Kuno, G.
author: Chang, G.-J.J.
journal: Arch Virol.
volume: 152
issue: 4
pages: 687-696
year: 2007
pubmed: 17195954

17195954
type: PubMed
SIO_000068: pubmed

2
title: Biological transmission of arboviruses: reexamination of and new insights into components, mechanisms, and unique traits as well as their evolutionary trends
author: Kuno, G.
author: Chang, G.J.
journal: Clin. Microbiol. Rev.
volume: 18
issue: 4
pages: 608-637
year: 2005
pubmed: 16223950

16223950
type: PubMed
SIO_000068: pubmed

3
title: Direct Submission
journal: Submitted (06-APR-2009) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA

4
title: Direct Submission
author: Kuno, G.
author: Chang, G.-J.J.
journal: Submitted (01-AUG-2006) Division of Vector-Borne Infect. Dis., CDC, P.O. Box 2087, Fort Collins, CO 80522-2087, USA
comments: Sequence update by submitter

5
title: Direct Submission
author: Kuno, G.
author: Chang, G.-J.J.
author: Tsuchiya, K.R.
journal: Submitted (21-MAY-2004) Arbovirus Diseases Branch, Division of Vector-Borne Infectious Diseases, Centers for Disease Control and Prevention, P.O. Box 2087, Fort Collins, CO 80522, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10794:1
position: 10794
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-10794:1:source
so part of: sequence
organism: Zika virus
mol type: genomic RNA
strain: MR 766
host: sentinel monkey
country: Uganda
note: mosquito-borne flavivirus

64320
type: Taxonomy
SIO_000068: taxonomy

5'UTR
type: Five Prime UTR
subclass of: SO_0000204
RO_0002162: 64320
so part of: sequence
location: 1..106
location: region:1-106:1
so has part: feature:1-106:1:region

position:106:1
position: 106
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-106:1:region

ZIKV_gp1
type: Gene
subclass of: SO_0000704
RO_0002162: 64320
gene: POLY
locus tag: ZIKV_gp1
so part of: sequence
location: 107..10366
location: region:107-10366:1
so has part: feature:107-10366:1:exon
subclass of: SO_0000010

7751225
type: Gene
SIO_000068: ncbigene

position:107:1
position: 107
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10366:1
position: 10366
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:107-10366:1:exon

ZIKV_gp1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 64320
gene: POLY
locus tag: ZIKV_gp1
codon start: 1
product: polyprotein
translation: MKNPKEEIRRIRIVNMLKRGVARVNPLGGLKRLPAGLLLGHGPIRMVLAILAFLRFTAIKPSLGLINRWGSVGKKEAMEIIKKFKKDLAAMLRIINARKERKRRGADTSIGIIGLLLTTAMAAEITRRGSAYYMYLDRSDAGKAISFATTLGVNKCHVQIMDLGHMCDATMSYECPMLDEGVEPDDVDCWCNTTSTWVVYGTCHHKKGEARRSRRAVTLPSHSTRKLQTRSQTWLESREYTKHLIKVENWIFRNPGFALVAVAIAWLLGSSTSQKVIYLVMILLIAPAYSIRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIELVTTTVSNMAEVRSYCYEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWGNGCGLFGKGSLVTCAKFTCSKKMTGKSIQPENLEYRIMLSVHGSQHSGMIGYETDEDRAKVEVTPNSPRAEATLGGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWFHDIPLPWHAGADTGTPHWNNKEALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAEMDGAKGRLFSGHLKCRLKMDKLRLKGVSYSLCTAAFTFTKVPAETLHGTVTVEVQYAGTDGPCKIPVQMAVDMQTLTPVGRLITANPVITESTENSKMMLELDPPFGDSYIVIGVGDKKITHHWHRSGSTIGKAFEATVRGAKRMAVLGDTAWDFGSVGGVFNSLGKGIHQIFGAAFKSLFGGMSWFSQILIGTLLVWLGLNTKNGSISLTCLALGGVMIFLSTAVSADVGCSVDFSKKETRCGTGVFIYNDVEAWRDRYKYHPDSPRRLAAAVKQAWEEGICGISSVSRMENIMWKSVEGELNAILEENGVQLTVVVGSVKNPMWRGPQRLPVPVNELPHGWKAWGKSYFVRAAKTNNSFVVDGDTLKECPLEHRAWNSFLVEDHGFGVFHTSVWLKVREDYSLECDPAVIGTAVKGREAAHSDLGYWIESEKNDTWRLKRAHLIEMKTCEWPKSHTLWTDGVEESDLIIPKSLAGPLSHHNTREGYRTQVKGPWHSEELEIRFEECPGTKVYVEETCGTRGPSLRSTTASGRVIEEWCCRECTMPPLSFRAKDGCWYGMEIRPRKEPESNLVRSMVTAGSTDHMDHFSLGVLVILLMVQEGLKKRMTTKIIMSTSMAVLVVMILGGFSMSDLAKLVILMGATFAEMNTGGDVAHLALVAAFKVRPALLVSFIFRANWTPRESMLLALASCLLQTAISALEGDLMVLINGFALAWLAIRAMAVPRTDNIALPILAALTPLARGTLLVAWRAGLATCGGIMLLSLKGKGSVKKNLPFVMALGLTAVRVVDPINVVGLLLLTRSGKRSWPPSEVLTAVGLICALAGGFAKADIEMAGPMAAVGLLIVSYVVSGKSVDMYIERAGDITWEKDAEVTGNSPRLDVALDESGDFSLVEEDGPPMREIILKVVLMAICGMNPIAIPFAAGAWYVYVKTGKRSGALWDVPAPKEVKKGETTDGVYRVMTRRLLGSTQVGVGVMQEGVFHTMWHVTKGAALRSGEGRLDPYWGDVKQDLVSYCGPWKLDAAWDGLSEVQLLAVPPGERARNIQTLPGIFKTKDGDIGAVALDYPAGTSGSPILDKCGRVIGLYGNGVVIKNGSYVSAITQGKREEETPVECFEPSMLKKKQLTVLDLHPGAGKTRRVLPEIVREAIKKRLRTVILAPTRVVAAEMEEALRGLPVRYMTTAVNVTHSGTEIVDLMCHATFTSRLLQPIRVPNYNLNIMDEAHFTDPSSIAARGYISTRVEMGEAAAIFMTATPPGTRDAFPDSNSPIMDTEVEVPERAWSSGFDWVTDHSGKTVWFVPSVRNGNEIAACLTKAGKRVIQLSRKTFETEFQKTKNQEWDFVITTDISEMGANFKADRVIDSRRCLKPVILDGERVILAGPMPVTHASAAQRRGRIGRNPNKPGDEYMYGGGCAETDEGHAHWLEARMLLDNIYLQDG…
SIO_010081: ZIKV_gp1
subclass of: SO_0000673
so part of: ZIKV_gp1
location: 107..10366
location: region:107-10366:1
so has part: feature:107-10366:1:exon

YP_002790881.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:107-10366:1:exon

ZIKV_gp1
type: Mature Peptide
subclass of: SO_0000419
RO_0002162: 64320
gene: POLY
locus tag: ZIKV_gp1
product: anchored capsid protein ancC
SIO_010081: ZIKV_gp1
subclass of: SO_0000673
so part of: ZIKV_gp1
location: 107..472
location: region:107-472:1
so has part: feature:107-472:1:exon

YP_009227206.1
type: Protein
SIO_000068: ncbiprotein

position:472:1
position: 472
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:107-472:1:exon

ZIKV_gp1
type: Mature Peptide
subclass of: SO_0000419
RO_0002162: 64320
gene: POLY
locus tag: ZIKV_gp1
product: capsid protein C
SIO_010081: ZIKV_gp1
subclass of: SO_0000673
so part of: ZIKV_gp1
location: 107..418
location: region:107-418:1
so has part: feature:107-418:1:exon

YP_009227196.1
type: Protein
SIO_000068: ncbiprotein

position:418:1
position: 418
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:107-418:1:exon

ZIKV_gp1
type: Mature Peptide
subclass of: SO_0000419
RO_0002162: 64320
gene: POLY
locus tag: ZIKV_gp1
product: membrane glycoprotein precursor prM
SIO_010081: ZIKV_gp1
subclass of: SO_0000673
so part of: ZIKV_gp1
location: 473..976
location: region:473-976:1
so has part: feature:473-976:1:exon

YP_009227197.1
type: Protein
SIO_000068: ncbiprotein

position:473:1
position: 473
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:976:1
position: 976
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:473-976:1:exon

ZIKV_gp1
type: Mature Peptide
subclass of: SO_0000419
RO_0002162: 64320
gene: POLY
locus tag: ZIKV_gp1
product: protein pr
SIO_010081: ZIKV_gp1
subclass of: SO_0000673
so part of: ZIKV_gp1
location: 473..751
location: region:473-751:1
so has part: feature:473-751:1:exon

YP_009227207.1
type: Protein
SIO_000068: ncbiprotein

position:751:1
position: 751
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:473-751:1:exon

ZIKV_gp1
type: Mature Peptide
subclass of: SO_0000419
RO_0002162: 64320
gene: POLY
locus tag: ZIKV_gp1
product: membrane glycoprotein M
SIO_010081: ZIKV_gp1
subclass of: SO_0000673
so part of: ZIKV_gp1
location: 752..976
location: region:752-976:1
so has part: feature:752-976:1:exon

YP_009227208.1
type: Protein
SIO_000068: ncbiprotein

position:752:1
position: 752
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:752-976:1:exon

ZIKV_gp1
type: Mature Peptide
subclass of: SO_0000419
RO_0002162: 64320
gene: POLY
locus tag: ZIKV_gp1
product: envelope protein E
SIO_010081: ZIKV_gp1
subclass of: SO_0000673
so part of: ZIKV_gp1
location: 977..2476
location: region:977-2476:1
so has part: feature:977-2476:1:exon

YP_009227198.1
type: Protein
SIO_000068: ncbiprotein

position:977:1
position: 977
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2476:1
position: 2476
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:977-2476:1:exon

ZIKV_gp1
type: Mature Peptide
subclass of: SO_0000419
RO_0002162: 64320
gene: POLY
locus tag: ZIKV_gp1
product: nonstructural protein NS1
SIO_010081: ZIKV_gp1
subclass of: SO_0000673
so part of: ZIKV_gp1
location: 2477..3532
location: region:2477-3532:1
so has part: feature:2477-3532:1:exon

YP_009227199.1
type: Protein
SIO_000068: ncbiprotein

position:2477:1
position: 2477
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3532:1
position: 3532
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2477-3532:1:exon

ZIKV_gp1
type: Mature Peptide
subclass of: SO_0000419
RO_0002162: 64320
gene: POLY
locus tag: ZIKV_gp1
product: nonstructural protein NS2A
SIO_010081: ZIKV_gp1
subclass of: SO_0000673
so part of: ZIKV_gp1
location: 3533..4210
location: region:3533-4210:1
so has part: feature:3533-4210:1:exon

YP_009227200.1
type: Protein
SIO_000068: ncbiprotein

position:3533:1
position: 3533
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4210:1
position: 4210
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3533-4210:1:exon

ZIKV_gp1
type: Mature Peptide
subclass of: SO_0000419
RO_0002162: 64320
gene: POLY
locus tag: ZIKV_gp1
product: nonstructural protein NS2B
SIO_010081: ZIKV_gp1
subclass of: SO_0000673
so part of: ZIKV_gp1
location: 4211..4600
location: region:4211-4600:1
so has part: feature:4211-4600:1:exon

YP_009227201.1
type: Protein
SIO_000068: ncbiprotein

position:4211:1
position: 4211
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4600:1
position: 4600
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4211-4600:1:exon

ZIKV_gp1
type: Mature Peptide
subclass of: SO_0000419
RO_0002162: 64320
gene: POLY
locus tag: ZIKV_gp1
product: nonstructural protein NS3
SIO_010081: ZIKV_gp1
subclass of: SO_0000673
so part of: ZIKV_gp1
location: 4601..6451
location: region:4601-6451:1
so has part: feature:4601-6451:1:exon

YP_009227202.1
type: Protein
SIO_000068: ncbiprotein

position:4601:1
position: 4601
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6451:1
position: 6451
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4601-6451:1:exon

ZIKV_gp1
type: Mature Peptide
subclass of: SO_0000419
RO_0002162: 64320
gene: POLY
locus tag: ZIKV_gp1
product: nonstructural protein NS4A
SIO_010081: ZIKV_gp1
subclass of: SO_0000673
so part of: ZIKV_gp1
location: 6452..6832
location: region:6452-6832:1
so has part: feature:6452-6832:1:exon

YP_009227203.1
type: Protein
SIO_000068: ncbiprotein

position:6452:1
position: 6452
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6832:1
position: 6832
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6452-6832:1:exon

ZIKV_gp1
type: Mature Peptide
subclass of: SO_0000419
RO_0002162: 64320
gene: POLY
locus tag: ZIKV_gp1
product: protein 2K
SIO_010081: ZIKV_gp1
subclass of: SO_0000673
so part of: ZIKV_gp1
location: 6833..6901
location: region:6833-6901:1
so has part: feature:6833-6901:1:exon

YP_009227209.1
type: Protein
SIO_000068: ncbiprotein

position:6833:1
position: 6833
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6901:1
position: 6901
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6833-6901:1:exon

ZIKV_gp1
type: Mature Peptide
subclass of: SO_0000419
RO_0002162: 64320
gene: POLY
locus tag: ZIKV_gp1
product: nonstructural protein NS4B
SIO_010081: ZIKV_gp1
subclass of: SO_0000673
so part of: ZIKV_gp1
location: 6902..7654
location: region:6902-7654:1
so has part: feature:6902-7654:1:exon

YP_009227204.1
type: Protein
SIO_000068: ncbiprotein

position:6902:1
position: 6902
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7654:1
position: 7654
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6902-7654:1:exon

ZIKV_gp1
type: Mature Peptide
subclass of: SO_0000419
RO_0002162: 64320
gene: POLY
locus tag: ZIKV_gp1
product: RNA-dependent RNA polymerase NS5
SIO_010081: ZIKV_gp1
subclass of: SO_0000673
so part of: ZIKV_gp1
location: 7655..10363
location: region:7655-10363:1
so has part: feature:7655-10363:1:exon

YP_009227205.1
type: Protein
SIO_000068: ncbiprotein

position:7655:1
position: 7655
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10363:1
position: 10363
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7655-10363:1:exon

3'UTR
type: Three Prime UTR
subclass of: SO_0000205
RO_0002162: 64320
so part of: sequence
location: 10367..10794
location: region:10367-10794:1
so has part: feature:10367-10794:1:region

position:10367:1
position: 10367
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10367-10794:1:region