Spondweni virus, complete genome.
type: Entry
definition: Spondweni virus, complete genome.
sequence version: NC_029055.1
sequence date: 2019-08-01
sequence: sequence
division: VRL
label: NC_029055.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA485481
keyword: RefSeq
source: Spondweni virus
organism: Spondweni virus
taxonomy: Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Flasuviricetes; Amarillovirales; Flaviviridae; Flavivirus.
reference: 1
references: 19741066
reference: 2
references: 17195954
reference: 3
reference: 4
comment: REVIEWED REFSEQ: This record has been curated by NCBI staff. The\nreference sequence is identical to DQ859064.\nMature peptides were annotated by RefSeq staff by identifying\nhomology to the cleavage sites for Zika virus reported in Kuno and\nChang, 2007 (PMID 17195954). Questions about the annotation of this\nsequence should be directed to info@ncbi.nlm.nih.gov.\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000353
sequence length: 10290
topology: linear
so has quality: SO_0000987
location: 1..10290
location: region:1-10290:1
RO_0002162: 64318

NC_029055
type: RefSeq
SIO_000068: refseq

PRJNA485481
type: BioProject
SIO_000068: bioproject

1
title: Genomics and evolution of Aedes-borne flaviviruses
author: Grard, G.
author: Moureau, G.
author: Charrel, R.N.
author: Holmes, E.C.
author: Gould, E.A.
author: de Lamballerie, X.
journal: J. Gen. Virol. 91 (PT 1), 87-94 (2010)
pubmed: 19741066

19741066
type: PubMed
SIO_000068: pubmed

2
title: Full-length sequencing and genomic characterization of Bagaza, Kedougou, and Zika viruses
author: Kuno, G.
author: Chang, G.
journal: Arch Virol.
volume: 154
issue: 4
pages: 687-696
year: 2007
pubmed: 17195954

17195954
type: PubMed
SIO_000068: pubmed

3
title: Direct Submission
journal: Submitted (04-FEB-2016) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA

4
title: Direct Submission
author: Brisbarre, N.
author: Moureau, G.
author: Grard, G.
author: de Lamballerie, X.
journal: Submitted (19-JUL-2006) Unite des Virus Emergents, Faculte de Medecine La Timone, 27 boulevard Jean Moulin, Marseille 13005, France

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10290:1
position: 10290
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-10290:1:source
so part of: sequence
organism: Spondweni virus
mol type: genomic RNA
strain: SM-6 V-1
country: South Africa

64318
type: Taxonomy
SIO_000068: taxonomy

ZIKV_gp2
type: Gene
subclass of: SO_0000704
RO_0002162: 64318
gene: POLY
locus tag: ZIKV_gp2
so part of: sequence
location: 1..10290
location: region:1-10290:1
so has part: feature:1-10290:1:exon
subclass of: SO_0000010

26798387
type: Gene
SIO_000068: ncbigene

urn:…
SIO_000300: 1
SIO_000628: feature:1-10290:1:exon

ZIKV_gp2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 64318
gene: POLY
locus tag: ZIKV_gp2
codon start: 1
product: polyprotein
translation: MKNPKRAGSSRLVNMLRRGAARVIPPGGGLKRLPVGLLLGRGPIKMILAILAFLRFTAIKPSTGLINRWGKVGKKEAIKILTKFKADVGTMLRIINNRKTKKRGVETGIVFLALLVSIVAVEVTKKGDTYYMFADKKDAGKVVTFETESGPNRCSIQAMDIGHMCPATMSYECPVLEPQYEPEDVDCWCNSTAAWIVYGTCTHKTTGETRRSRRSITLPSHASQKLETRSSTWLESREYSKYLIKVENWILRNPGYALVAAVIGWTLGSSRSQKIIFVTLLMLVAPAYSIRCIGIGNRDFIEGMSGGTWVDIVLEHGGCVTVMSNDKPTLDFELVTTTASNMAEVRSYCYEANISEMASDSRCPTQGEAYLDKMADSQFVCKRGYVDRGWGNGCGLFGKGSIVTCAKFTCVKKLTGKSIQPENLEYRVLVSVHASQHGGMINNDTNHQHDKENRARIDITASAPRVEVELGSFGSFSMECEPRSGLNFGDLYYLTMNNKHWLVNRDWFHDLSLPWHTGATSNNHHWNNKEALVEFREAHAKKQTAVVLGSQEGAVHAALAGALEAESDGHKATIYSGHLKCRLKLDKLRLKGMSYALCTGAFTFARTPSETIHGTATVELQYAGEDGPCKVPIVITSDTNSMASTGRLITANPVVTESGANSKMMVEIDPPFGDSYIIVGTGTTKITHHWHRAGSSIGRAFEATMRGAKRMAVLGDTAWDFGSVGGMFNSVGKFVHQVFGSAFKALFGGMSWFTQLLIGFLLIWMGLNARGGTVAMSFMGIGAMLIFLATSVSGDTGCSVDISRREMRCGSGIFVYNDVDAWRSRYKYHPETPRALAAAVKTAWEEGTCGITSVSRMENLMWSSVAGELNAILEDNSVPLTVVVGEPKYPLYNAPKRLKPPASELPQGWKSWGKSYFVSAAKNNNSFVVDGDTMKECPRQKRAWNSLRIEDHGFGVFHTSIWLKFHEDNSTECDTAIIGTAVRGKEAVHSDLGYWIESERNDTWRLSRAHLIEAKTCEWPRSHTLWTDGVEESELIIPRGLAGPFSHHNTRAGYKTQNKGPWHLGDVEIQFATCPGTTVVQDQECRDRGASLRTTTASGRVINEWCCRSCTMPPLSFKTKDGCWYAMEIRPVKEQESNLVRSHVTAGSTDHMDHFSLGLVVVMLMVQEGMKKRMTSKAIITSAAFLLAVMIVGGFTYQDFGRLVVLVGAAFAEMNTGGDVAHLALVAAFKVRPAMLVSFMFRALWTPRESLLLALAACLLQVSVTPLDHSIMIVVDGIALSWLCLKAILVPRTPNIALPLLAMLSPMLQGTTIVAWRAMMAALAVITLASMKHGRGVKKTFPYTIGCILGSMGLVENLGLVGLLLLTASKKRSWPPSEVMTAVGLICAIVGGLTKTDIDMAGPMAAIGLLVVSYVVSGKSVDMYIEKVCDISWDKDAEITGTSPRLDVALDDSGDFSLIQDDGPPTREIVLKVFLMCVCGVSPIAIPFAAAAWFVYIKSGKRSGAMWDIPSPREVKKGETTAGVYRIMTRKLLGSTQVGAGVMHEGVFHTMWHVTKGSALRSGEGRLDPYWGNVKQDLISYCGPWKLDGKWDGVSEVQLIAVAPGERARNVQTKPGVFKTTDGEIGALALDFPGGSSGSPIIDKNGHVIGLYGNGVVVKSGSYVSAIMQTEKMEEPAVDCFEEDMLRKKKLTVLDLHPGAGKTRRVLPQIVKAAIKKRLRTVILAPTRVVAAEMAEALKDLPIRYMTPAVSATHDGNEIVDLMCHATFTSRLMQPIRVPNYNLYIMDEAHFTDPASIAARGYIATRVDMGDAAAIFMTATPPGSTEAFPDSNAPITDVETEVPDKAWNSGFEWITDYPGKTVWFVPSVRMGNEISACLTKAGKSVIQLSRKTFETEYQKTKNGEWDFVVTTDISEMGANFKADRVIDSRKCLKPVILDDMEERVVLAGPMAVTPSSAAQRRGRIGRNPNKTGDEFYYGGGCAATDDDHAHWVEARMLLDN…
SIO_010081: ZIKV_gp2
subclass of: SO_0000673
so part of: ZIKV_gp2
location: 1..10290
location: region:1-10290:1
so has part: feature:1-10290:1:exon

YP_009222008.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1-10290:1:exon

ZIKV_gp2
type: Mature Peptide
subclass of: SO_0000419
RO_0002162: 64318
gene: POLY
locus tag: ZIKV_gp2
product: anchored capsid protein ancC
SIO_010081: ZIKV_gp2
subclass of: SO_0000673
so part of: ZIKV_gp2
location: 1..360
location: region:1-360:1
so has part: feature:1-360:1:exon

YP_009227182.1
type: Protein
SIO_000068: ncbiprotein

position:360:1
position: 360
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-360:1:exon

ZIKV_gp2
type: Mature Peptide
subclass of: SO_0000419
RO_0002162: 64318
gene: POLY
locus tag: ZIKV_gp2
product: capsid protein C
SIO_010081: ZIKV_gp2
subclass of: SO_0000673
so part of: ZIKV_gp2
location: 1..309
location: region:1-309:1
so has part: feature:1-309:1:exon

YP_009227185.1
type: Protein
SIO_000068: ncbiprotein

position:309:1
position: 309
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-309:1:exon

ZIKV_gp2
type: Mature Peptide
subclass of: SO_0000419
RO_0002162: 64318
gene: POLY
locus tag: ZIKV_gp2
product: membrane glycoprotein precursor prM
SIO_010081: ZIKV_gp2
subclass of: SO_0000673
so part of: ZIKV_gp2
location: 361..867
location: region:361-867:1
so has part: feature:361-867:1:exon

YP_009227186.1
type: Protein
SIO_000068: ncbiprotein

position:361:1
position: 361
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:867:1
position: 867
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:361-867:1:exon

ZIKV_gp2
type: Mature Peptide
subclass of: SO_0000419
RO_0002162: 64318
gene: POLY
locus tag: ZIKV_gp2
product: protein pr
SIO_010081: ZIKV_gp2
subclass of: SO_0000673
so part of: ZIKV_gp2
location: 361..642
location: region:361-642:1
so has part: feature:361-642:1:exon

YP_009227183.1
type: Protein
SIO_000068: ncbiprotein

position:642:1
position: 642
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:361-642:1:exon

ZIKV_gp2
type: Mature Peptide
subclass of: SO_0000419
RO_0002162: 64318
gene: POLY
locus tag: ZIKV_gp2
product: membrane glycoprotein M
SIO_010081: ZIKV_gp2
subclass of: SO_0000673
so part of: ZIKV_gp2
location: 643..867
location: region:643-867:1
so has part: feature:643-867:1:exon

YP_009227184.1
type: Protein
SIO_000068: ncbiprotein

position:643:1
position: 643
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:643-867:1:exon

ZIKV_gp2
type: Mature Peptide
subclass of: SO_0000419
RO_0002162: 64318
gene: POLY
locus tag: ZIKV_gp2
product: envelope protein E
SIO_010081: ZIKV_gp2
subclass of: SO_0000673
so part of: ZIKV_gp2
location: 868..2382
location: region:868-2382:1
so has part: feature:868-2382:1:exon

YP_009227187.1
type: Protein
SIO_000068: ncbiprotein

position:868:1
position: 868
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2382:1
position: 2382
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:868-2382:1:exon

ZIKV_gp2
type: Mature Peptide
subclass of: SO_0000419
RO_0002162: 64318
gene: POLY
locus tag: ZIKV_gp2
product: nonstructural protein NS1
SIO_010081: ZIKV_gp2
subclass of: SO_0000673
so part of: ZIKV_gp2
location: 2383..3438
location: region:2383-3438:1
so has part: feature:2383-3438:1:exon

YP_009227188.1
type: Protein
SIO_000068: ncbiprotein

position:2383:1
position: 2383
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3438:1
position: 3438
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2383-3438:1:exon

ZIKV_gp2
type: Mature Peptide
subclass of: SO_0000419
RO_0002162: 64318
gene: POLY
locus tag: ZIKV_gp2
product: nonstructural protein NS2A
SIO_010081: ZIKV_gp2
subclass of: SO_0000673
so part of: ZIKV_gp2
location: 3439..4116
location: region:3439-4116:1
so has part: feature:3439-4116:1:exon

YP_009227189.1
type: Protein
SIO_000068: ncbiprotein

position:3439:1
position: 3439
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4116:1
position: 4116
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3439-4116:1:exon

ZIKV_gp2
type: Mature Peptide
subclass of: SO_0000419
RO_0002162: 64318
gene: POLY
locus tag: ZIKV_gp2
product: nonstructural protein NS2B
SIO_010081: ZIKV_gp2
subclass of: SO_0000673
so part of: ZIKV_gp2
location: 4117..4506
location: region:4117-4506:1
so has part: feature:4117-4506:1:exon

YP_009227190.1
type: Protein
SIO_000068: ncbiprotein

position:4117:1
position: 4117
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4506:1
position: 4506
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4117-4506:1:exon

ZIKV_gp2
type: Mature Peptide
subclass of: SO_0000419
RO_0002162: 64318
gene: POLY
locus tag: ZIKV_gp2
product: nonstructural protein NS3
SIO_010081: ZIKV_gp2
subclass of: SO_0000673
so part of: ZIKV_gp2
location: 4507..6363
location: region:4507-6363:1
so has part: feature:4507-6363:1:exon

YP_009227191.1
type: Protein
SIO_000068: ncbiprotein

position:4507:1
position: 4507
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6363:1
position: 6363
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4507-6363:1:exon

ZIKV_gp2
type: Mature Peptide
subclass of: SO_0000419
RO_0002162: 64318
gene: POLY
locus tag: ZIKV_gp2
product: nonstructural protein NS4A
SIO_010081: ZIKV_gp2
subclass of: SO_0000673
so part of: ZIKV_gp2
location: 6364..6744
location: region:6364-6744:1
so has part: feature:6364-6744:1:exon

YP_009227192.1
type: Protein
SIO_000068: ncbiprotein

position:6364:1
position: 6364
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6744:1
position: 6744
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6364-6744:1:exon

ZIKV_gp2
type: Mature Peptide
subclass of: SO_0000419
RO_0002162: 64318
gene: POLY
locus tag: ZIKV_gp2
product: protein 2K
SIO_010081: ZIKV_gp2
subclass of: SO_0000673
so part of: ZIKV_gp2
location: 6745..6813
location: region:6745-6813:1
so has part: feature:6745-6813:1:exon

YP_009227193.1
type: Protein
SIO_000068: ncbiprotein

position:6745:1
position: 6745
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6813:1
position: 6813
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6745-6813:1:exon

ZIKV_gp2
type: Mature Peptide
subclass of: SO_0000419
RO_0002162: 64318
gene: POLY
locus tag: ZIKV_gp2
product: nonstructural protein NS4B
SIO_010081: ZIKV_gp2
subclass of: SO_0000673
so part of: ZIKV_gp2
location: 6814..7578
location: region:6814-7578:1
so has part: feature:6814-7578:1:exon

YP_009227194.1
type: Protein
SIO_000068: ncbiprotein

position:6814:1
position: 6814
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7578:1
position: 7578
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6814-7578:1:exon

ZIKV_gp2
type: Mature Peptide
subclass of: SO_0000419
RO_0002162: 64318
gene: POLY
locus tag: ZIKV_gp2
product: RNA-dependent RNA polymerase NS5
SIO_010081: ZIKV_gp2
subclass of: SO_0000673
so part of: ZIKV_gp2
location: 7579..10287
location: region:7579-10287:1
so has part: feature:7579-10287:1:exon

YP_009227195.1
type: Protein
SIO_000068: ncbiprotein

position:7579:1
position: 7579
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10287:1
position: 10287
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7579-10287:1:exon