Sphaerotilus sulfidivorans strain D-507 plasmid pSna507_unt10, complete sequence.
Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales; Sphaerotilaceae; Sphaerotilus.
Complete Genome Sequence and Methylome Analysis of Sphaerotilus natans subsp. sulfidivorans D-507
Submitted (05-FEB-2019) Genome Biology, NEB, 240 County Rd, Ipswich, MA 01938, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP035710.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\nThis genome has a base modification file available.\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 30-MAY-2018\nAssembly Method :: HGAP v. 2.3.0\nAssembly Name :: Sphaerotilus D-507_BP9_50_HGAP3_2\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 179.73x\nSequencing Technology :: PacBio RS\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/26/2023 03:04:22\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,023\nCDSs (total) :: 3,942\nGenes (coding) :: 3,883\nCDSs (with protein) :: 3,883\nGenes (RNA) :: 81\nrRNAs :: 4, 4, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 3 (5S, 16S, 23S)\ntRNAs :: 67\nncRNAs :: 3\nPseudo Genes (total) :: 59\nCDSs (without protein) :: 59\nPseudo Genes (ambiguous residues) :: 0 of 59\nPseudo Genes (frameshifted) :: 22 of 59\nPseudo Genes (incomplete) :: 39 of 59\nPseudo Genes (internal stop) :: 5 of 59\nPseudo Genes (multiple problems) :: 7 of 59\nCRISPR Arrays :: 3\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_076611183.1
GO:0004803 - transposase activity [Evidence IEA]
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017876737.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF012245.2
GO:0007165 - signal transduction [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011351730.1
GO:0016861 - intramolecular oxidoreductase activity, interconverting aldoses and ketoses [Evidence IEA]
GO:0019310 - inositol catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012328343.1
GO:0050114 - myo-inosose-2 dehydratase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019718043.1
GO:0016823 - hydrolase activity, acting on acid carbon-carbon bonds, in ketonic substances [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0030976 - thiamine pyrophosphate binding [Evidence IEA]
3D-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing)
COORDINATES: similar to AA sequence:RefSeq:WP_006764554.1
GO:0047590 - 5-dehydro-2-deoxygluconokinase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012348318.1
sugar ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_006764552.1
sugar ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_011001192.1
COORDINATES: similar to AA sequence:RefSeq:WP_014694071.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007040508.1
COORDINATES: similar to AA sequence:RefSeq:WP_015877995.1
COORDINATES: similar to AA sequence:RefSeq:WP_009666374.1
COORDINATES: similar to AA sequence:RefSeq:WP_009147676.1
protein-glutamate O-methyltransferase CheR
COORDINATES: similar to AA sequence:RefSeq:WP_009858267.1
COORDINATES: similar to AA sequence:RefSeq:WP_003613805.1
GO:0000156 - phosphorelay response regulator activity [Evidence IEA]; GO:0008984 - protein-glutamate methylesterase activity [Evidence IEA]
GO:0006935 - chemotaxis [Evidence IEA]; GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
chemotaxis-specific protein-glutamate methyltransferase CheB
COORDINATES: similar to AA sequence:RefSeq:WP_017839519.1
GO:0006935 - chemotaxis [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009855904.1
COORDINATES: nucleotide motif:Rfam:14.4:RF00174
cobalamin riboswitch; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_003458304.1
GO:0042242 - cobyrinic acid a,c-diamide synthase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018715376.1
energy-coupling factor ABC transporter permease
COORDINATES: similar to AA sequence:RefSeq:WP_011767251.1
GO:0046026 - precorrin-4 C11-methyltransferase activity [Evidence IEA]
GO:0009236 - cobalamin biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010961527.1
COORDINATES: similar to AA sequence:RefSeq:WP_008906452.1
COORDINATES: similar to AA sequence:RefSeq:WP_011793263.1
GO:0008168 - methyltransferase activity [Evidence IEA]
cobalt-precorrin-5B (C(1))-methyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_018715381.1
GO:0046025 - precorrin-6Y C5,15-methyltransferase (decarboxylating) activity [Evidence IEA]
GO:0046140 - corrin biosynthetic process [Evidence IEA]
precorrin-6y C5,15-methyltransferase (decarboxylating) subunit CbiE
COORDINATES: similar to AA sequence:RefSeq:WP_013592608.1
GO:0030788 - precorrin-2 C20-methyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019700652.1
cobalamin biosynthesis central domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019572684.1
COORDINATES: similar to AA sequence:RefSeq:WP_011767259.1
GO:0030789 - precorrin-3B C17-methyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018715386.1
NAD(P)H-dependent oxidoreductase subunit E
COORDINATES: similar to AA sequence:RefSeq:WP_019576428.1
COORDINATES: similar to AA sequence:RefSeq:WP_008500178.1
COORDINATES: similar to AA sequence:RefSeq:WP_012347242.1
COORDINATES: similar to AA sequence:RefSeq:WP_009520078.1
substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012348633.1
COORDINATES: similar to AA sequence:RefSeq:WP_006998912.1
COORDINATES: protein motif:HMM:NF015861.2
COORDINATES: similar to AA sequence:RefSeq:WP_012346373.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:0030151 - molybdenum ion binding [Evidence IEA]; GO:0043546 - molybdopterin cofactor binding [Evidence IEA]; GO:0008940 - nitrate reductase activity [Evidence IEA]
nitrate reductase catalytic subunit NapA
COORDINATES: similar to AA sequence:RefSeq:WP_002926067.1
COORDINATES: similar to AA sequence:RefSeq:WP_018989439.1
quinol dehydrogenase ferredoxin subunit NapH
COORDINATES: similar to AA sequence:RefSeq:WP_012346370.1
nitrate reductase cytochrome c-type subunit
COORDINATES: similar to AA sequence:RefSeq:WP_018989441.1
COORDINATES: similar to AA sequence:RefSeq:WP_013595384.1
COORDINATES: similar to AA sequence:RefSeq:WP_009857624.1
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014426938.1
GO:0004129 - cytochrome-c oxidase activity [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]
GO:0009060 - aerobic respiration [Evidence IEA]
cbb3-type cytochrome c oxidase subunit I
COORDINATES: similar to AA sequence:RefSeq:WP_009548703.1
COORDINATES: similar to AA sequence:RefSeq:WP_009548704.1
COORDINATES: similar to AA sequence:RefSeq:WP_009857628.1
COORDINATES: similar to AA sequence:RefSeq:WP_013518987.1
Crp/Fnr family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_017642230.1
GO:0043190 - ATP-binding cassette (ABC) transporter complex [Evidence IEA]
GO:0015439 - ABC-type heme transporter activity [Evidence IEA]
GO:0015886 - heme transport [Evidence IEA]
heme ABC exporter ATP-binding protein CcmA
COORDINATES: similar to AA sequence:RefSeq:WP_006218854.1
GO:0015232 - heme transmembrane transporter activity [Evidence IEA]
GO:0017004 - cytochrome complex assembly [Evidence IEA]; GO:0015886 - heme transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011300882.1
COORDINATES: similar to AA sequence:RefSeq:WP_011633193.1
COORDINATES: similar to AA sequence:RefSeq:WP_018912909.1
COORDINATES: similar to AA sequence:RefSeq:WP_019446970.1
DsbE family thiol:disulfide interchange protein
COORDINATES: protein motif:HMM:NF015853.2
cytochrome c-type biogenesis protein CcmH
COORDINATES: protein motif:HMM:NF024247.2
4Fe-4S dicluster domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011803903.1
COORDINATES: similar to AA sequence:RefSeq:WP_008902885.1
COORDINATES: protein motif:HMM:NF014273.2
ParB N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF013584.2
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011812641.1
PQQ-dependent catabolism-associated beta-propeller protein
COORDINATES: similar to AA sequence:RefSeq:WP_006578023.1
COORDINATES: protein motif:HMM:NF019350.2
GO:0000155 - phosphorelay sensor kinase activity [Evidence IEA]; GO:0046983 - protein dimerization activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011828078.1
COORDINATES: similar to AA sequence:RefSeq:WP_011828076.1
methanol/ethanol family PQQ-dependent dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_007184280.1
COORDINATES: protein motif:HMM:NF024834.2
COORDINATES: protein motif:HMM:NF013235.2
COORDINATES: similar to AA sequence:RefSeq:WP_012406360.1
COORDINATES: protein motif:HMM:TIGR00180.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_007855098.1
COORDINATES: similar to AA sequence:RefSeq:WP_012703462.1
GO:0004334 - fumarylacetoacetase activity [Evidence IEA]
GO:0006559 - L-phenylalanine catabolic process [Evidence IEA]; GO:0006572 - tyrosine catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019296672.1
COORDINATES: similar to AA sequence:RefSeq:WP_019574846.1
tripartite tricarboxylate transporter substrate binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_011767402.1
COORDINATES: similar to AA sequence:RefSeq:WP_015767727.1
COORDINATES: similar to AA sequence:RefSeq:WP_015015945.1
COORDINATES: similar to AA sequence:RefSeq:WP_011767405.1
COORDINATES: protein motif:HMM:NF012264.2
COORDINATES: similar to AA sequence:RefSeq:WP_006393933.1
GO:0042597 - periplasmic space [Evidence IEA]
GO:0016638 - oxidoreductase activity, acting on the CH-NH2 group of donors [Evidence IEA]
GO:0009308 - amine metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009550528.1
tripartite tricarboxylate transporter substrate-binding protein
COORDINATES: protein motif:HMM:NF024242.2
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:TIGR01786.1
GO:0019867 - outer membrane [Evidence IEA]
GO:0022857 - transmembrane transporter activity [Evidence IEA]
TonB-dependent hemoglobin/transferrin/lactoferrin family receptor
COORDINATES: similar to AA sequence:RefSeq:WP_019577302.1
ChuX/HutX family heme-like substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_019577301.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_019883422.1
iron chelate uptake ABC transporter family permease subunit
COORDINATES: similar to AA sequence:RefSeq:WP_009858552.1
COORDINATES: protein motif:HMM:NF012546.2
GO:0008236 - serine-type peptidase activity [Evidence IEA]
prolyl oligopeptidase family serine peptidase
COORDINATES: similar to AA sequence:RefSeq:WP_006158268.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0003724 - RNA helicase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024991.2
COORDINATES: similar to AA sequence:RefSeq:WP_019699976.1
COORDINATES: similar to AA sequence:RefSeq:WP_007831606.1
COORDINATES: similar to AA sequence:RefSeq:WP_007831605.1
COORDINATES: similar to AA sequence:RefSeq:WP_007869227.1
COORDINATES: similar to AA sequence:RefSeq:WP_008906530.1
COORDINATES: similar to AA sequence:RefSeq:WP_013540665.1
COORDINATES: similar to AA sequence:RefSeq:WP_012748494.1
GO:0009331 - glycerol-3-phosphate dehydrogenase complex [Evidence IEA]
GO:0004368 - glycerol-3-phosphate dehydrogenase (quinone) activity [Evidence IEA]
GO:0006072 - glycerol-3-phosphate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016449165.1
DeoR/GlpR family DNA-binding transcription regulator
COORDINATES: similar to AA sequence:RefSeq:WP_018905929.1
GO:0004370 - glycerol kinase activity [Evidence IEA]
GO:0006071 - glycerol metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011385301.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008904634.1
GO:0004450 - isocitrate dehydrogenase (NADP+) activity [Evidence IEA]
GO:0006099 - tricarboxylic acid cycle [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009520076.1
GO:0047443 - 4-hydroxy-4-methyl-2-oxoglutarate aldolase activity [Evidence IEA]
4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase
COORDINATES: similar to AA sequence:RefSeq:WP_013543501.1
COORDINATES: similar to AA sequence:RefSeq:WP_011801418.1
COORDINATES: similar to AA sequence:RefSeq:WP_009520074.1
GO:0018579 - protocatechuate 4,5-dioxygenase activity [Evidence IEA]
GO:0046278 - 3,4-dihydroxybenzoate metabolic process [Evidence IEA]
protocatechuate 4,5-dioxygenase subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_019042090.1
class III extradiol dioxygenase subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_019430291.1
COORDINATES: similar to AA sequence:RefSeq:WP_003769719.1
GO:0003855 - 3-dehydroquinate dehydratase activity [Evidence IEA]
GO:0009423 - chorismate biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013539951.1
GO:0009279 - cell outer membrane [Evidence IEA]
GO:0015288 - porin activity [Evidence IEA]
efflux transporter outer membrane subunit
COORDINATES: similar to AA sequence:RefSeq:WP_019701882.1
COORDINATES: similar to AA sequence:RefSeq:WP_017874497.1
GO:0005215 - transporter activity [Evidence IEA]
efflux RND transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_012347495.1
ferric reductase-like transmembrane domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014427117.1
COORDINATES: similar to AA sequence:RefSeq:WP_003376760.1
COORDINATES: similar to AA sequence:RefSeq:WP_007848037.1
GO:0008867 - galactarate dehydratase activity [Evidence IEA]
GO:0046392 - galactarate catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020299863.1
GO:0047448 - 5-dehydro-4-deoxyglucarate dehydratase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020205018.1
COORDINATES: similar to AA sequence:RefSeq:WP_012746873.1
GO:0008872 - glucarate dehydratase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]
GO:0019394 - glucarate catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006296470.1
COORDINATES: similar to AA sequence:RefSeq:WP_002636404.1
GO:0018738 - S-formylglutathione hydrolase activity [Evidence IEA]
GO:0046292 - formaldehyde metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012204334.1
GO:0004024 - alcohol dehydrogenase activity, zinc-dependent [Evidence IEA]; GO:0051903 - S-(hydroxymethyl)glutathione dehydrogenase activity [Evidence IEA]
GO:0006113 - fermentation [Evidence IEA]; GO:0009404 - toxin metabolic process [Evidence IEA]
S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_011260271.1
metal/formaldehyde-sensitive transcriptional repressor
COORDINATES: similar to AA sequence:RefSeq:WP_013345071.1
GO:0008721 - D-serine ammonia-lyase activity [Evidence IEA]; GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
GO:0046416 - D-amino acid metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004265891.1
2Fe-2S iron-sulfur cluster binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008344265.1
COORDINATES: similar to AA sequence:RefSeq:WP_011830880.1
COORDINATES: similar to AA sequence:RefSeq:WP_014192842.1
aromatic/alkene/methane monooxygenase hydroxylase/oxygenase subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_011829876.1
COORDINATES: similar to AA sequence:RefSeq:WP_008643954.1
COORDINATES: similar to AA sequence:RefSeq:WP_004357965.1
COORDINATES: similar to AA sequence:RefSeq:WP_011828601.1
aromatic ring-hydroxylating dioxygenase subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_014193034.1
COORDINATES: similar to AA sequence:RefSeq:WP_020165919.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0008134 - transcription factor binding [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
sigma-54-dependent Fis family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_011830885.1
COORDINATES: protein motif:HMM:NF024946.2
COORDINATES: similar to AA sequence:RefSeq:WP_011289534.1
GO:0016853 - isomerase activity [Evidence IEA]
GO:0006725 - cellular aromatic compound metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018230567.1
COORDINATES: similar to AA sequence:RefSeq:WP_002940973.1
GO:0008701 - 4-hydroxy-2-oxovalerate aldolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011289531.1
GO:0008774 - acetaldehyde dehydrogenase (acetylating) activity [Evidence IEA]
acetaldehyde dehydrogenase (acetylating)
COORDINATES: similar to AA sequence:RefSeq:WP_011830899.1
GO:0047437 - 4-oxalocrotonate decarboxylase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011765586.1
GO:0003824 - catalytic activity [Evidence IEA]
fumarylacetoacetate hydrolase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018992901.1
GO:0016620 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor [Evidence IEA]
2-hydroxymuconic semialdehyde dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_003288498.1
GO:0018577 - catechol 2,3-dioxygenase activity [Evidence IEA]
GO:0009712 - catechol-containing compound metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012701634.1
COORDINATES: similar to AA sequence:RefSeq:WP_008953039.1
COORDINATES: protein motif:HMM:NF013200.2
COORDINATES: similar to AA sequence:RefSeq:WP_008953045.1
electron transfer flavoprotein subunit alpha/FixB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014007080.1
COORDINATES: similar to AA sequence:RefSeq:WP_004186960.1
COORDINATES: similar to AA sequence:RefSeq:WP_017773742.1
COORDINATES: similar to AA sequence:RefSeq:WP_017773741.1
COORDINATES: similar to AA sequence:RefSeq:WP_013147992.1
COORDINATES: similar to AA sequence:RefSeq:WP_009975601.1
COORDINATES: protein motif:HMM:NF012402.2
hybrid-cluster NAD(P)-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_011811751.1
glycine betaine/L-proline ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_017876390.1
proline/glycine betaine ABC transporter permease
COORDINATES: similar to AA sequence:RefSeq:WP_012347360.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_020084458.1
COORDINATES: similar to AA sequence:RefSeq:WP_017876393.1
choline ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_012356628.1
COORDINATES: similar to AA sequence:RefSeq:WP_012356629.1
GO:0008812 - choline dehydrogenase activity [Evidence IEA]
GO:0019285 - glycine betaine biosynthetic process from choline [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018992389.1
glycine betaine ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_013232222.1
branched-chain amino acid ABC transporter substrate-binding protein
COORDINATES: protein motif:HMM:NF016180.2
sarcosine oxidase subunit gamma family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008955492.1
GO:0008115 - sarcosine oxidase activity [Evidence IEA]
sarcosine oxidase subunit alpha family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013947483.1
COORDINATES: similar to AA sequence:RefSeq:WP_010107645.1
GO:0046653 - tetrahydrofolate metabolic process [Evidence IEA]
sarcosine oxidase subunit beta family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008952936.1
COORDINATES: similar to AA sequence:RefSeq:WP_013517056.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:0003941 - L-serine ammonia-lyase activity [Evidence IEA]
GO:0009063 - amino acid catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008344997.1
GO:0008864 - formyltetrahydrofolate deformylase activity [Evidence IEA]
GO:0009152 - purine ribonucleotide biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009859067.1
COORDINATES: similar to AA sequence:RefSeq:WP_003182891.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_007832047.1
COORDINATES: similar to AA sequence:RefSeq:WP_005796773.1
rhodanese-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013122650.1
COORDINATES: similar to AA sequence:RefSeq:WP_013902704.1
GO:0004756 - selenide, water dikinase activity [Evidence IEA]
GO:0016260 - selenocysteine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015744426.1
GO:0055085 - transmembrane transport [Evidence IEA]
putative selenate ABC transporter substrate-binding protein
COORDINATES: protein motif:HMM:NF012738.2
COORDINATES: protein motif:HMM:NF012235.2
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007839223.1
GO:0043828 - tRNA 2-selenouridine synthase activity [Evidence IEA]
GO:0002098 - tRNA wobble uridine modification [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009549213.1
COORDINATES: similar to AA sequence:RefSeq:WP_009046540.1
COORDINATES: similar to AA sequence:RefSeq:WP_018715413.1
crotonase/enoyl-CoA hydratase family protein
COORDINATES: similar to AA sequence:RefSeq:YP_002516541.1
GO:0016747 - acyltransferase activity, transferring groups other than amino-acyl groups [Evidence IEA]
GO:0019619 - 3,4-dihydroxybenzoate catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF012363.2
COORDINATES: similar to AA sequence:RefSeq:WP_017525433.1
COORDINATES: similar to AA sequence:RefSeq:WP_011694045.1
COORDINATES: similar to AA sequence:RefSeq:WP_004003444.1
COORDINATES: protein motif:HMM:NF015366.2
COORDINATES: similar to AA sequence:RefSeq:WP_010188364.1
LysR substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010397228.1
COORDINATES: similar to AA sequence:RefSeq:WP_012434623.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0015446 - ATPase-coupled arsenite transmembrane transporter activity [Evidence IEA]
GO:0071722 - detoxification of arsenic-containing substance [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012218054.1
arsenite efflux transporter metallochaperone ArsD
COORDINATES: similar to AA sequence:RefSeq:WP_011004416.1
COORDINATES: similar to AA sequence:RefSeq:WP_013092973.1
COORDINATES: similar to AA sequence:RefSeq:WP_012701620.1
COORDINATES: similar to AA sequence:RefSeq:WP_018229327.1
COORDINATES: similar to AA sequence:RefSeq:WP_017453809.1
COORDINATES: similar to AA sequence:RefSeq:WP_012345447.1
RpiB/LacA/LacB family sugar-phosphate isomerase
COORDINATES: similar to AA sequence:RefSeq:WP_012345448.1
GO:0004371 - glycerone kinase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018509113.1
GO:0004802 - transketolase activity [Evidence IEA]
GO:0006098 - pentose-phosphate shunt [Evidence IEA]
COORDINATES: protein motif:HMM:NF002881.0
GO:0004801 - transaldolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013233138.1
COORDINATES: similar to AA sequence:RefSeq:WP_012349262.1
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_012345442.1
TRAP transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_019561772.1
COORDINATES: similar to AA sequence:RefSeq:WP_010875272.1
COORDINATES: similar to AA sequence:RefSeq:WP_012345445.1
COORDINATES: similar to AA sequence:RefSeq:WP_007158547.1
COORDINATES: similar to AA sequence:RefSeq:WP_011482409.1
transketolase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012417522.1
COORDINATES: similar to AA sequence:RefSeq:WP_010116763.1
COORDINATES: similar to AA sequence:RefSeq:WP_008645706.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019572347.1
COORDINATES: similar to AA sequence:RefSeq:WP_014427198.1
COORDINATES: similar to AA sequence:RefSeq:WP_008119872.1
GO:0046872 - metal ion binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015475079.1
COORDINATES: protein motif:HMM:NF024376.2
PhnD/SsuA/transferrin family substrate-binding protein
COORDINATES: protein motif:HMM:NF018884.2
GO:0016791 - phosphatase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019574776.1
GO:0009982 - pseudouridine synthase activity [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]
GO:0001522 - pseudouridine synthesis [Evidence IEA]; GO:0009451 - RNA modification [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006402130.1
COORDINATES: similar to AA sequence:RefSeq:WP_007431087.1
COORDINATES: similar to AA sequence:RefSeq:WP_014897275.1
COORDINATES: similar to AA sequence:RefSeq:WP_009290213.1
COORDINATES: protein motif:HMM:NF024799.2
LacI family DNA-binding transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_006497758.1
MurR/RpiR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_012348290.1
COORDINATES: similar to AA sequence:RefSeq:WP_011353119.1
COORDINATES: similar to AA sequence:RefSeq:WP_012348288.1
GO:0050112 - inositol 2-dehydrogenase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010115747.1
COORDINATES: similar to AA sequence:RefSeq:WP_009562745.1
COORDINATES: similar to AA sequence:RefSeq:WP_017523929.1
COORDINATES: similar to AA sequence:RefSeq:WP_011800041.1
COORDINATES: similar to AA sequence:RefSeq:WP_011800040.1
COORDINATES: similar to AA sequence:RefSeq:WP_012339432.1
MarR family winged helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_003112296.1
COORDINATES: similar to AA sequence:RefSeq:WP_011489369.1
COORDINATES: similar to AA sequence:RefSeq:WP_006297570.1
COORDINATES: similar to AA sequence:RefSeq:WP_019717610.1
COORDINATES: similar to AA sequence:RefSeq:WP_005669093.1
COORDINATES: similar to AA sequence:RefSeq:WP_005795281.1
COORDINATES: similar to AA sequence:RefSeq:WP_009857987.1
GO:0004160 - dihydroxy-acid dehydratase activity [Evidence IEA]
GO:0009082 - branched-chain amino acid biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012506754.1
COORDINATES: similar to AA sequence:RefSeq:WP_015910456.1
COORDINATES: similar to AA sequence:RefSeq:WP_012346142.1
SMP-30/gluconolactonase/LRE family protein
COORDINATES: similar to AA sequence:RefSeq:WP_017906342.1
COORDINATES: similar to AA sequence:RefSeq:WP_004356946.1
COORDINATES: similar to AA sequence:RefSeq:WP_015372468.1
COORDINATES: similar to AA sequence:RefSeq:WP_011334822.1
COORDINATES: similar to AA sequence:RefSeq:WP_008452713.1
COORDINATES: similar to AA sequence:RefSeq:WP_005798456.1
FadR/GntR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_009119733.1
GO:0003868 - 4-hydroxyphenylpyruvate dioxygenase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013543619.1
COORDINATES: protein motif:HMM:NF022610.2
COORDINATES: similar to AA sequence:RefSeq:WP_012347138.1
COORDINATES: similar to AA sequence:RefSeq:WP_012202696.1
COORDINATES: similar to AA sequence:RefSeq:WP_016453983.1
COORDINATES: similar to AA sequence:RefSeq:WP_017405878.1
COORDINATES: similar to AA sequence:RefSeq:WP_013804673.1
COORDINATES: protein motif:HMM:NF033681.1
ExeM/NucH family extracellular endonuclease
COORDINATES: protein motif:HMM:TIGR00254.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612155.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF024829.2
HlyD family efflux transporter periplasmic adaptor subunit