Sphaerotilus sulfidivorans strain D-507 plasmid pSna507_unt13, complete sequence.
Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales; Sphaerotilaceae; Sphaerotilus.
Complete Genome Sequence and Methylome Analysis of Sphaerotilus natans subsp. sulfidivorans D-507
Submitted (05-FEB-2019) Genome Biology, NEB, 240 County Rd, Ipswich, MA 01938, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP035707.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\nThis genome has a base modification file available.\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 30-MAY-2018\nAssembly Method :: HGAP v. 2.3.0\nAssembly Name :: Sphaerotilus D-507_BP9_50_HGAP3_2\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 179.73x\nSequencing Technology :: PacBio RS\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/26/2023 03:04:22\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,023\nCDSs (total) :: 3,942\nGenes (coding) :: 3,883\nCDSs (with protein) :: 3,883\nGenes (RNA) :: 81\nrRNAs :: 4, 4, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 3 (5S, 16S, 23S)\ntRNAs :: 67\nncRNAs :: 3\nPseudo Genes (total) :: 59\nCDSs (without protein) :: 59\nPseudo Genes (ambiguous residues) :: 0 of 59\nPseudo Genes (frameshifted) :: 22 of 59\nPseudo Genes (incomplete) :: 39 of 59\nPseudo Genes (internal stop) :: 5 of 59\nPseudo Genes (multiple problems) :: 7 of 59\nCRISPR Arrays :: 3\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_076612149.1
GO:0004803 - transposase activity [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008933051.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012347359.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_007674356.1
endonuclease/exonuclease/phosphatase family protein
COORDINATES: protein motif:HMM:NF021356.2
COORDINATES: similar to AA sequence:RefSeq:WP_015258290.1
GO:0004520 - endodeoxyribonuclease activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
GO:0043571 - maintenance of CRISPR repeat elements [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006747401.1
COORDINATES: similar to AA sequence:RefSeq:WP_015434794.1
helix-turn-helix transcriptional regulator
COORDINATES: protein motif:HMM:NF033442.0
BREX system serine/threonine kinase PglW
COORDINATES: protein motif:HMM:NF033451.1
BREX-2 system adenine-specific DNA-methyltransferase PglX
COORDINATES: protein motif:HMM:NF013793.2
COORDINATES: protein motif:HMM:NF039983.1
COORDINATES: similar to AA sequence:RefSeq:WP_015434800.1
COORDINATES: similar to AA sequence:RefSeq:WP_011797933.1
COORDINATES: protein motif:HMM:NF016724.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_076612070.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF024676.2
COORDINATES: protein motif:HMM:NF012234.2
COORDINATES: similar to AA sequence:RefSeq:WP_004310855.1
GO:0070403 - NAD+ binding [Evidence IEA]
Sir2 family NAD-dependent protein deacetylase
COORDINATES: similar to AA sequence:RefSeq:WP_009148805.1
COORDINATES: similar to AA sequence:RefSeq:WP_012305506.1
dual specificity protein phosphatase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011629287.1
COORDINATES: protein motif:HMM:NF024601.2
COORDINATES: similar to AA sequence:RefSeq:WP_015093408.1
COORDINATES: protein motif:HMM:NF033564.0
COORDINATES: protein motif:HMM:NF033517.1
COORDINATES: protein motif:HMM:NF021349.2
COORDINATES: protein motif:HMM:NF013235.2
COORDINATES: protein motif:HMM:NF018290.2
COORDINATES: protein motif:HMM:TIGR00180.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_012585834.1
COORDINATES: similar to AA sequence:RefSeq:WP_012585835.1
SbcC/MukB-like Walker B domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012585836.1
COORDINATES: similar to AA sequence:RefSeq:WP_012585837.1