Arsenophonus nasoniae strain FIN plasmid pArsFIN15, complete sequence.
type: Entry
definition: Arsenophonus nasoniae strain FIN plasmid pArsFIN15, complete sequence.
sequence version: NZ_CP038627.1
sequence date: 2023-03-25
sequence: sequence
division: CON
label: NZ_CP038627.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN11265189
keyword: RefSeq
source: Arsenophonus nasoniae (son-killer infecting Nasonia vitripennis)
organism: Arsenophonus nasoniae
taxonomy: Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Morganellaceae; Arsenophonus.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP038627.1.\nAnnotated using prokka 1.12-beta from\nhttps://github.com/tseemann/prokka.\nBacteria and source DNA available from Prof Greg Hurst, Institute\nof Integrative Biology, University of Liverpool.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 2018\nAssembly Method :: Unicycler v. 0.4.5\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 169.0x\nSequencing Technology :: Oxford Nanopore MiniION; PacBio RSII;\n Illumina MiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/25/2023 01:21:09\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,421\nCDSs (total) :: 5,317\nGenes (coding) :: 4,929\nCDSs (with protein) :: 4,929\nGenes (RNA) :: 104\nrRNAs :: 8, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 8, 7, 7 (5S, 16S, 23S)\ntRNAs :: 70\nncRNAs :: 12\nPseudo Genes (total) :: 388\nCDSs (without protein) :: 388\nPseudo Genes (ambiguous residues) :: 0 of 388\nPseudo Genes (frameshifted) :: 199 of 388\nPseudo Genes (incomplete) :: 170 of 388\nPseudo Genes (internal stop) :: 85 of 388\nPseudo Genes (multiple problems) :: 61 of 388\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 15977
topology: circular
so has quality: SO_0000988
location: 1..15977
location: region:1-15977:1
RO_0002162: 638

NZ_CP038627
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN11265189
type: BioSample
SIO_000068: biosample

1
title: Long-read sequencing reveals hyperdense prophage content in a complex bacterial symbiont genome
author: Frost, C.L.
author: Siozios, S.
author: Nadal-Jimenez, P.
author: Brockhurst, M.A.
author: King, K.C.
author: Darby, A.C.
author: Hurst, G.D.D.
journal: Unpublished

2
title: Direct Submission
author: Siozios, S.
author: Darby, A.C.
author: Hurst, G.D.D.
journal: Submitted (29-MAR-2019) Evolution, Ecology and Behaviour, University of Liverpool, Crown Street, Biosciences building, Liverpool L69 7ZB, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15977:1
position: 15977
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-15977:1:source
so part of: sequence
organism: Arsenophonus nasoniae
mol type: genomic DNA
strain: FIN
isolation source: whole insect
host: Nasonia vitripennis
plasmid: pArsFIN15
country: Finland
collection date: 2013

638
type: Taxonomy
SIO_000068: taxonomy

ArsFIN_RS25960
type: Gene
subclass of: SO_0000704
RO_0002162: 638
locus tag: ArsFIN_RS25960
so part of: sequence
location: complement(join(15206..15977,1..401))
location: region:1-15977:-1
so has part: feature:1-401:-1:exon
so has part: feature:15206-15977:-1:exon
subclass of: SO_0000010

position:1:-1
position: 1
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15977:-1
position: 15977
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-401:-1:exon

position:401:-1
position: 401
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:15206-15977:-1:exon

position:15206:-1
position: 15206
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

ArsFIN_RS25960
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 638
locus tag: ArsFIN_RS25960
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000733255.1
GO component: GO:0044423 - virion component [Evidence IEA]
GO function: GO:0005198 - structural molecule activity [Evidence IEA]
GO process: GO:0019068 - virion assembly [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: phage major capsid protein
translation: MKKLIELRQQKSALTEQMRSLLTQSEQEKRSLNAEEAKQFEELRSQADSLNTDIARYEAIAEEIRSTASTENRSQPSEKITNAELRHYVMTGETRSLSTSVQADGGYTVIPELDKQIMRRLTDNSEMRQICTVRRVHSNEYKKLVSIGGATVTHGEEGKIRNETATPKLEEISIKLFPIYAYPKTTQEILDFSDVDILSWLTEEIADVFTETEETDLVTGDGNKKAKGFLAYPREAKNDKNRSFGKLEKLITADATPTSDELIDLTFKLKKQYRKNAVWVMNSSTAATLQKLKNGNGDYIWRDRMQASEPDILLGYPVHYLEDMPDIAAGKAVIAVGDFKRGYTIVDHETGTRTRPDNITEAGFFKLHTNKYLGGGLVDSNAIKVMEIKA
SIO_010081: ArsFIN_RS25960
subclass of: SO_0000673
so part of: ArsFIN_RS25960
location: complement(join(15206..15977,1..401))
location: region:1-15977:-1
so has part: feature:1-401:-1:exon
so has part: feature:15206-15977:-1:exon

WP_210409140.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1-401:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:15206-15977:-1:exon

ArsFIN_RS25965
type: Gene
subclass of: SO_0000704
RO_0002162: 638
locus tag: ArsFIN_RS25965
old locus tag: ArsFIN_56140
so part of: sequence
location: complement(859..1902)
location: region:859-1902:-1
so has part: feature:859-1902:-1:exon
subclass of: SO_0000010

position:859:-1
position: 859
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1902:-1
position: 1902
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:859-1902:-1:exon

ArsFIN_RS25965
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 638
locus tag: ArsFIN_RS25965
old locus tag: ArsFIN_56140
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTEDNLKADYFDIYDSCEEINKLIQPEIIDKKEIVYLWKNSKIALCFDWGVDYWDRLALDIEFIVNQVKNSVYTDTADLKFLELLYSIVGDKINLINESSVNRIIKRIENILFYLKNRKSHLILPEKITYEDFLLKSSIINVQPISAMTRAVTFPEKRQINLNPILSFKAKPYKTNCEYFYINIPSRKGTEWISYNSIKKAIDFNNYFLSGVEYDDFVLPKDEINALLYLYRIDKEERSNYYLESKNTRIENRSNNTLSHFPSTTSSSPKTVNYLASALKAFIQIQYGAEVAENIRKYLEDPNSEVSQDFSGIGLKAPNGKALQKHMRDVVIEIIPEIEKSEVNTLE
SIO_010081: ArsFIN_RS25965
subclass of: SO_0000673
so part of: ArsFIN_RS25965
location: complement(859..1902)
location: region:859-1902:-1
so has part: feature:859-1902:-1:exon

WP_026824130.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:859-1902:-1:exon

ArsFIN_RS25970
type: Gene
subclass of: SO_0000704
RO_0002162: 638
locus tag: ArsFIN_RS25970
old locus tag: ArsFIN_56150
so part of: sequence
location: complement(1919..2080)
location: region:1919-2080:-1
so has part: feature:1919-2080:-1:exon
subclass of: SO_0000010

position:1919:-1
position: 1919
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2080:-1
position: 2080
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1919-2080:-1:exon

ArsFIN_RS25970
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 638
locus tag: ArsFIN_RS25970
old locus tag: ArsFIN_56150
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTIAEQLEARGYQLGQKDASTKIAQQLLINGAERNLIKIATGLSDSELDKLSE
SIO_010081: ArsFIN_RS25970
subclass of: SO_0000673
so part of: ArsFIN_RS25970
location: complement(1919..2080)
location: region:1919-2080:-1
so has part: feature:1919-2080:-1:exon

WP_210409141.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1919-2080:-1:exon

ArsFIN_RS25975
type: Gene
subclass of: SO_0000704
RO_0002162: 638
locus tag: ArsFIN_RS25975
old locus tag: ArsFIN_56160
so part of: sequence
location: complement(2093..2395)
location: region:2093-2395:-1
so has part: feature:2093-2395:-1:exon
subclass of: SO_0000010

position:2093:-1
position: 2093
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2395:-1
position: 2395
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2093-2395:-1:exon

ArsFIN_RS25975
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 638
locus tag: ArsFIN_RS25975
old locus tag: ArsFIN_56160
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015833758.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: HigA family addiction module antitoxin
translation: METITAEPTTVGEMLNEEFLKPLNITQQQLAEAMKVSRKVIGQIVNNTRRLTVGEASQLAALFELDDDFWINVQAAHDRWEARKIISSQHFRPINILLNI
SIO_010081: ArsFIN_RS25975
subclass of: SO_0000673
so part of: ArsFIN_RS25975
location: complement(2093..2395)
location: region:2093-2395:-1
so has part: feature:2093-2395:-1:exon

WP_026824134.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2093-2395:-1:exon

ArsFIN_RS25980
type: Gene
subclass of: SO_0000704
RO_0002162: 638
locus tag: ArsFIN_RS25980
old locus tag: ArsFIN_56170
so part of: sequence
location: complement(2404..2700)
location: region:2404-2700:-1
so has part: feature:2404-2700:-1:exon
subclass of: SO_0000010

position:2404:-1
position: 2404
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2700:-1
position: 2700
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2404-2700:-1:exon

ArsFIN_RS25980
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 638
locus tag: ArsFIN_RS25980
old locus tag: ArsFIN_56170
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004874046.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system RelE/ParE family toxin
translation: MIGSFKEGETGSLCRFYQYDELSGDIPMMITRQLRRKLSILAAASSERSLFQPRSNNYERLSGVLEGWSSIRINIQWRLIFRWREGVAYDVYLDPHKY
SIO_010081: ArsFIN_RS25980
subclass of: SO_0000673
so part of: ArsFIN_RS25980
location: complement(2404..2700)
location: region:2404-2700:-1
so has part: feature:2404-2700:-1:exon

WP_026824135.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2404-2700:-1:exon

ArsFIN_RS25985
type: Gene
subclass of: SO_0000704
RO_0002162: 638
locus tag: ArsFIN_RS25985
old locus tag: ArsFIN_56180
so part of: sequence
location: 3520..3714
location: region:3520-3714:1
so has part: feature:3520-3714:1:exon
subclass of: SO_0000010

position:3520:1
position: 3520
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3714:1
position: 3714
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3520-3714:1:exon

ArsFIN_RS25985
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 638
locus tag: ArsFIN_RS25985
old locus tag: ArsFIN_56180
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MATQISLSDESDFKLIRAREVTSSLCKHIQSYNLEHEPMPWLGEVLSYVSEDIACVVEEIGNQR
SIO_010081: ArsFIN_RS25985
subclass of: SO_0000673
so part of: ArsFIN_RS25985
location: 3520..3714
location: region:3520-3714:1
so has part: feature:3520-3714:1:exon

WP_135679343.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3520-3714:1:exon

ArsFIN_RS25990
type: Gene
subclass of: SO_0000704
RO_0002162: 638
locus tag: ArsFIN_RS25990
old locus tag: ArsFIN_56190
so part of: sequence
location: 3868..4827
location: region:3868-4827:1
so has part: feature:3868-4827:1:exon
subclass of: SO_0000010

position:3868:1
position: 3868
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4827:1
position: 4827
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3868-4827:1:exon

ArsFIN_RS25990
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 638
locus tag: ArsFIN_RS25990
old locus tag: ArsFIN_56190
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010848986.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiation protein
translation: MNNKAIDYFNENLPRKPYCTDDFCCGVRILPQAKAMLKRYIQHNPPHSMAIFAYDLDYQGGAIGWDERGCPPFNISAMTKANTHAHGYYIVLPGVRTAPDGSMKALKYGAAVQRGIRVKLGADPNYGNLLCKNPNHADWQVTQWRHEPYTLDELADYLDLSAANAPLIESTYGLGRNCTVFEKTRKWAYRAIRRGWPAFAQWFAACFERAMAYNVQFPVPLSEPEVKAIAKSIAKWTHRRFTEKAFAEYVARTHTPEIQAARGSRNSKEVQAIKGSLSHGGGRPEGSVIVGSIEQRKPWKALGIHRATYYRRKAKGIIQ
SIO_010081: ArsFIN_RS25990
subclass of: SO_0000673
so part of: ArsFIN_RS25990
location: 3868..4827
location: region:3868-4827:1
so has part: feature:3868-4827:1:exon

WP_135679345.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3868-4827:1:exon

ArsFIN_RS25995
type: Gene
subclass of: SO_0000704
RO_0002162: 638
locus tag: ArsFIN_RS25995
old locus tag: ArsFIN_56210
so part of: sequence
location: complement(6368..8488)
location: region:6368-8488:-1
so has part: feature:6368-8488:-1:exon
subclass of: SO_0000010

position:6368:-1
position: 6368
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8488:-1
position: 8488
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6368-8488:-1:exon

ArsFIN_RS25995
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 638
locus tag: ArsFIN_RS25995
old locus tag: ArsFIN_56210
inference: COORDINATES: protein motif:HMM:NF017116.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: VapE family protein
translation: MYPVNDICKKAQGQWEFILQHLDISTNRKESPCPACGGNTRYRFDDKEGRGTHHCSHCGAGDGLNLIMKVKHCTAIQGAKMIADVISLPLPERTSKLEEKPQIPIADKVIELVTRAHMGESKYLNNKGLHGSHYILEDGSLLLPLQTIEGTITGAQIIKPNGEKRMIAGTKKSRSFIPISKIPKDPDAIVITEGYATALTVNLLEVGSVFAAVDAGNLLSVAEAFREKYPNADIYIAGDNDVSNDGNVGKDAAEKAAKAVGGKFSLPKTDYQCDWNDYFQAKGIEELEREFNANLRIPLNKAGRPASKEKKSKANTFPHELNLKINERTGEYDTNLKNIQKAIKCHDVTGFQFSYDKFKSAEMVRFGEHWIEINDNTITNLRLRLDELGMPKVRQDEVRRVVNCVAEENSFDSGIDWITSLVWDGKPRVKNFFSQYFSAKGNAEYIEAVSKYTWTALAGRMMKPAIKADMVPIIYGEQGKTKSTGIEKMCPFDDAFVKIDLTKNDEDIARRIRGCVIAEWEELRGLSGRDSESTKAFISATKDKWIPKYREYAVTNPRRLIFIGTTNKQEILTDCTGNRRYLPLNSGQVNCSAIERDRDQLWAEALVLFNEHGIMWQKAEELAKKEHEQYRVKDSWEDDLFEYLEIGTKREMQFVSTEALFSRLGLMVGHTNRNHAERLKAVMSAFGYDKAKKRINGQEKRGYFKI
SIO_010081: ArsFIN_RS25995
subclass of: SO_0000673
so part of: ArsFIN_RS25995
location: complement(6368..8488)
location: region:6368-8488:-1
so has part: feature:6368-8488:-1:exon

WP_135679346.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6368-8488:-1:exon

ArsFIN_RS26000
type: Gene
subclass of: SO_0000704
RO_0002162: 638
locus tag: ArsFIN_RS26000
old locus tag: ArsFIN_56220
so part of: sequence
location: complement(8550..8834)
location: region:8550-8834:-1
so has part: feature:8550-8834:-1:exon
subclass of: SO_0000010

position:8550:-1
position: 8550
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8834:-1
position: 8834
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8550-8834:-1:exon

ArsFIN_RS26000
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 638
locus tag: ArsFIN_RS26000
old locus tag: ArsFIN_56220
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKAIEISEGKSLPKENQKNSKKPEMSIDSYRKLIRAQNVAFHMHRHMNTYGLTDEPMPFLPDIFSYVSEDVSDILQEVENLGLVDHFTENTENK
SIO_010081: ArsFIN_RS26000
subclass of: SO_0000673
so part of: ArsFIN_RS26000
location: complement(8550..8834)
location: region:8550-8834:-1
so has part: feature:8550-8834:-1:exon

WP_135679348.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8550-8834:-1:exon

ArsFIN_RS26005
type: Gene
subclass of: SO_0000704
RO_0002162: 638
locus tag: ArsFIN_RS26005
old locus tag: ArsFIN_56240
so part of: sequence
location: 9207..9371
location: region:9207-9371:1
so has part: feature:9207-9371:1:exon
subclass of: SO_0000010

position:9207:1
position: 9207
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9371:1
position: 9371
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9207-9371:1:exon

ArsFIN_RS26005
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 638
locus tag: ArsFIN_RS26005
old locus tag: ArsFIN_56240
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSRLKTDQYQMRISHELRIQLESEMKKDGDSSLATWIKRILRKELQSRGITPEG
SIO_010081: ArsFIN_RS26005
subclass of: SO_0000673
so part of: ArsFIN_RS26005
location: 9207..9371
location: region:9207-9371:1
so has part: feature:9207-9371:1:exon

WP_167876804.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9207-9371:1:exon

ArsFIN_RS26010
type: Gene
subclass of: SO_0000704
RO_0002162: 638
locus tag: ArsFIN_RS26010
old locus tag: ArsFIN_56250
so part of: sequence
location: 9762..10199
location: region:9762-10199:1
so has part: feature:9762-10199:1:exon
subclass of: SO_0000010

position:9762:1
position: 9762
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10199:1
position: 10199
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9762-10199:1:exon

ArsFIN_RS26010
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 638
locus tag: ArsFIN_RS26010
old locus tag: ArsFIN_56250
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000031238.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MarR family transcriptional regulator
translation: MAKKYTQIDTDTGEEVGSFVAIIRPKQKSAFERHFTMNQAALLLIANELNHDQMRVLLALLADLDYENYIQVAQIDIAKALRMQKTHVSRAVKNLLEFGIILEGPKIGRSKTYRLNPQFGWKGTVSNHKKALKHGLSVIDGGKVT
SIO_010081: ArsFIN_RS26010
subclass of: SO_0000673
so part of: ArsFIN_RS26010
location: 9762..10199
location: region:9762-10199:1
so has part: feature:9762-10199:1:exon

WP_167876805.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9762-10199:1:exon

ArsFIN_RS26015
type: Gene
subclass of: SO_0000704
RO_0002162: 638
locus tag: ArsFIN_RS26015
old locus tag: ArsFIN_56260
so part of: sequence
location: complement(10241..10480)
location: region:10241-10480:-1
so has part: feature:10241-10480:-1:exon
subclass of: SO_0000010

position:10241:-1
position: 10241
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10480:-1
position: 10480
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10241-10480:-1:exon

ArsFIN_RS26015
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 638
locus tag: ArsFIN_RS26015
old locus tag: ArsFIN_56260
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MPITIQETIEYREKLGIKDIPSMTNDEYRETFTEKTWLFYVDHHDFIRSYFTGEILAASKEQIDVMIELLKDLKNQMED
SIO_010081: ArsFIN_RS26015
subclass of: SO_0000673
so part of: ArsFIN_RS26015
location: complement(10241..10480)
location: region:10241-10480:-1
so has part: feature:10241-10480:-1:exon

WP_135679352.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10241-10480:-1:exon

ArsFIN_RS26020
type: Gene
subclass of: SO_0000704
RO_0002162: 638
locus tag: ArsFIN_RS26020
old locus tag: ArsFIN_56270
so part of: sequence
location: complement(10539..12200)
location: region:10539-12200:-1
so has part: feature:10539-12200:-1:exon
subclass of: SO_0000010

position:10539:-1
position: 10539
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12200:-1
position: 12200
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10539-12200:-1:exon

ArsFIN_RS26020
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 638
locus tag: ArsFIN_RS26020
old locus tag: ArsFIN_56270
inference: COORDINATES: similar to AA sequence:RefSeq:YP_005229104.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: terminase large subunit
translation: MTDWHQYAESVKNGSISSCKRLRQATDRYFKDLHNPIYKFDTEDVRRFIAFSHLCPHVKGHLRGKPIQLEPWQQFAIANILGFKEVSTGRRKYRSAYIQVPRKNAKSTLAAILANWFLLMENGQQDIYTAAVSRDQARIVFDDARQMAILSKTLRKRLTIQQHKLIYPKSNSILKPLAAKAATIEGTNPSLAIVDEYHLHPDNAVYSALELGMGARPEALLFAITTAGSNVVSACKQHYDYCCQILDGEEQNESLFALIYELDDESEVDKPEQWIKANPNLGVSVDKVALVDTIQKARGIPSQWVEMLTKRFNLWCQGQTPWMGTGSWESCQANYTEDDLKGQDCYAGLDLSSTGDITSVCYAFPRENEILLLSRHYLPEEQLQNVANKNRSLYRMWKSQGWLRTTKGDCIDYDVIRDDILKDSERFNIRLIGFDTWNATHLRTQLQGAGLDVEPFPQTYMRFSPVAKSAEVFVNRKIIKHNADPILAWAMSNVVMENDANANIKPNKKKSANKIDPAIAFLMAFGTLQAEHEEFAYSLSDEQKQRLQEFSGV
SIO_010081: ArsFIN_RS26020
subclass of: SO_0000673
so part of: ArsFIN_RS26020
location: complement(10539..12200)
location: region:10539-12200:-1
so has part: feature:10539-12200:-1:exon

WP_135679366.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10539-12200:-1:exon

ArsFIN_RS26025
type: Gene
subclass of: SO_0000704
RO_0002162: 638
locus tag: ArsFIN_RS26025
old locus tag: ArsFIN_56280
so part of: sequence
location: complement(12175..12540)
location: region:12175-12540:-1
so has part: feature:12175-12540:-1:exon
subclass of: SO_0000010

position:12175:-1
position: 12175
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12540:-1
position: 12540
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12175-12540:-1:exon

ArsFIN_RS26025
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 638
locus tag: ArsFIN_RS26025
old locus tag: ArsFIN_56280
inference: COORDINATES: similar to AA sequence:RefSeq:WP_001353110.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: phage terminase small subunit P27 family
translation: MTVTPAAPDYFDDIAISAWNDKAKFVAERSDFNETDWSSLELYCANYSIYRKAVADISKRGFSLANSQGSESRNPALSAKAEAEKTMIKMASLLGFDPVSRRRNPVEIEEEDELDRLASIR
SIO_010081: ArsFIN_RS26025
subclass of: SO_0000673
so part of: ArsFIN_RS26025
location: complement(12175..12540)
location: region:12175-12540:-1
so has part: feature:12175-12540:-1:exon

WP_135679354.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12175-12540:-1:exon

ArsFIN_RS26030
type: Gene
subclass of: SO_0000704
RO_0002162: 638
locus tag: ArsFIN_RS26030
old locus tag: ArsFIN_56290
so part of: sequence
location: complement(12682..13140)
location: region:12682-13140:-1
so has part: feature:12682-13140:-1:exon
subclass of: SO_0000010

position:12682:-1
position: 12682
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13140:-1
position: 13140
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12682-13140:-1:exon

ArsFIN_RS26030
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 638
locus tag: ArsFIN_RS26030
old locus tag: ArsFIN_56290
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004097120.1
GO function: GO:0004519 - endonuclease activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: HNH endonuclease
translation: MPYQPLRRCNEPGCFKRVKSGKCELHKREARKRLERRRGTNTQRGYSSKWFKYRLSYLQEHPLCVACESNGKCTPAKIVDHIIPINGDNDVLFWWQDNHQSLCLSCHSHKTMIKDPQTKEQRKAGMFRDLEEKASHRNDWIHEYNLNGIKTK
SIO_010081: ArsFIN_RS26030
subclass of: SO_0000673
so part of: ArsFIN_RS26030
location: complement(12682..13140)
location: region:12682-13140:-1
so has part: feature:12682-13140:-1:exon

WP_135679356.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12682-13140:-1:exon

ArsFIN_RS26035
type: Gene
subclass of: SO_0000704
RO_0002162: 638
locus tag: ArsFIN_RS26035
old locus tag: ArsFIN_56300
so part of: sequence
location: complement(13141..13437)
location: region:13141-13437:-1
so has part: feature:13141-13437:-1:exon
subclass of: SO_0000010

position:13141:-1
position: 13141
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13437:-1
position: 13437
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13141-13437:-1:exon

ArsFIN_RS26035
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 638
locus tag: ArsFIN_RS26035
old locus tag: ArsFIN_56300
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004245347.1
GO process: GO:0016032 - viral process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: head-tail connector protein
translation: MDKPEITLEEIKHHCRINHEYDDESLKLFGEAALEVCQQYIGKQFNDQFLLTPAIKVGCLMLITFWFENRGEASDDRSNQIPFPIRSIWNLYRHVGIY
SIO_010081: ArsFIN_RS26035
subclass of: SO_0000673
so part of: ArsFIN_RS26035
location: complement(13141..13437)
location: region:13141-13437:-1
so has part: feature:13141-13437:-1:exon

WP_135679358.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13141-13437:-1:exon

ArsFIN_RS26040
type: Gene
subclass of: SO_0000704
RO_0002162: 638
locus tag: ArsFIN_RS26040
old locus tag: ArsFIN_56310
so part of: sequence
location: complement(13430..14677)
location: region:13430-14677:-1
so has part: feature:13430-14677:-1:exon
subclass of: SO_0000010

position:13430:-1
position: 13430
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14677:-1
position: 14677
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13430-14677:-1:exon

ArsFIN_RS26040
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 638
locus tag: ArsFIN_RS26040
old locus tag: ArsFIN_56310
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004857970.1
GO component: GO:0044423 - virion component [Evidence IEA]
GO function: GO:0005198 - structural molecule activity [Evidence IEA]
GO process: GO:0019068 - virion assembly [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: phage portal protein
translation: MISVSGGWNSWGCDMWPFKSKTESRSMTIDEFFSLASVPNSTSGEYVSPTTAESLPAVMNAVTVISEAVAAMPCYLYRVIHREGQESREWLSDHPVDYLLNERPNDIQTAYQFKRTLMRHCLLNGNAYAVIEWGEDGQPKSLNPYPPQAVTVNQIGDHRYVYNVTEPYSGKSRSYLQHEVLHLRYATDDGFMGRSPITQCRETLGLGLAQQRHGASIMKDGMMAAGIIKSDEWLDSVKGAKALEALERYKGAKNAGKTPILEGKMQYEKLGMSNQDAEWLASRRMTIEDVGRMFNVSPIFLQEYSNSTYSNFSEASRAFLTMTIRPWLANFEQQIKAALLVESSIPNVRHQIEFDSADLLRSNPQERFQSYETAIKSGVMSPNEAREREGLSPRDGGDEFSQAWRQSMEVKKENG
SIO_010081: ArsFIN_RS26040
subclass of: SO_0000673
so part of: ArsFIN_RS26040
location: complement(13430..14677)
location: region:13430-14677:-1
so has part: feature:13430-14677:-1:exon

WP_167876806.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13430-14677:-1:exon

ArsFIN_RS26045
type: Gene
subclass of: SO_0000704
RO_0002162: 638
locus tag: ArsFIN_RS26045
old locus tag: ArsFIN_56320
so part of: sequence
location: complement(14637..15209)
location: region:14637-15209:-1
so has part: feature:14637-15209:-1:exon
subclass of: SO_0000010

position:14637:-1
position: 14637
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15209:-1
position: 15209
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14637-15209:-1:exon

ArsFIN_RS26045
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 638
locus tag: ArsFIN_RS26045
old locus tag: ArsFIN_56320
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004097113.1
GO component: GO:0044423 - virion component [Evidence IEA]
GO function: GO:0008233 - peptidase activity [Evidence IEA]; GO:0005198 - structural molecule activity [Evidence IEA]
GO process: GO:0019068 - virion assembly [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: HK97 family phage prohead protease
translation: MKSTMSNIEIRTANFASQEKNLTGYAVKWHSLSGLMGNSFRERFAPYAFRNSLNKDSDVLALWEHDPKSLLGRTTSGTLTLNEDDTGLSFSLNLPDTQLGKDVLKMVERGDIQGMSFGFCAIEDNWDTSTEPYVRTVNRAELKEITITSQPVYSESTIEIAKRSLYQSINESAQKLMDDQRKWWLEFLGV
SIO_010081: ArsFIN_RS26045
subclass of: SO_0000673
so part of: ArsFIN_RS26045
location: complement(14637..15209)
location: region:14637-15209:-1
so has part: feature:14637-15209:-1:exon

WP_135679362.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14637-15209:-1:exon