Nostoc punctiforme PCC 73102 plasmid pNPUN02, complete sequence.
Nostoc punctiforme PCC 73102 (Nostoc punctiforme ATCC 29133)
Bacteria; Cyanobacteriota; Cyanophyceae; Nostocales; Nostocaceae; Nostoc.
Complete sequence of plasmid2 of Nostoc punctiforme ATCC 29133
Submitted (07-APR-2008) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP001039.1.\nURL -- http://www.jgi.doe.gov\nJGI Project ID: 2351359\nSource DNA available from John C. Meeks (jcMeeks@ucdavis.edu)\nBacteria available from ATCC: ATCC 29133\nContacts: John C. Meeks (jcMeeks@ucdavis.edu)\n David Bruce (microbes@cuba.jgi-psf.org)\nQuality assurance done by JGI-Stanford\nAnnotation done by JGI-ORNL and JGI-PGF\nFinishing done by JGI-LLNL\nFinished microbial genomes have been curated to close all gaps with\ngreater than 98% coverage of at least two independent clones. Each\nbase pair has a minimum q (quality) value of 30 and the total error\nrate is less than one per 50000.\nThe JGI and collaborators endorse the principles for the\ndistribution and use of large scale sequencing data adopted by the\nlarger genome sequencing community and urge users of this data to\nfollow them. it is our intention to publish the work of this\nproject in a timely fashion and we welcome collaborative\ninteraction on the project and analysis.\n(http://www.genome.gov/page.cfm?pageID=10506376).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/11/2023 10:59:08\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 7,706\nCDSs (total) :: 7,606\nGenes (coding) :: 7,283\nCDSs (with protein) :: 7,283\nGenes (RNA) :: 100\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 84\nncRNAs :: 4\nPseudo Genes (total) :: 323\nCDSs (without protein) :: 323\nPseudo Genes (ambiguous residues) :: 0 of 323\nPseudo Genes (frameshifted) :: 142 of 323\nPseudo Genes (incomplete) :: 185 of 323\nPseudo Genes (internal stop) :: 92 of 323\nPseudo Genes (multiple problems) :: 85 of 323\nCRISPR Arrays :: 6\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_012412928.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006278957.1
COORDINATES: similar to AA sequence:RefSeq:WP_015179641.1
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_016953847.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015111611.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]
RNA polymerase sigma factor, RpoD/SigA family
COORDINATES: similar to AA sequence:RefSeq:WP_016948769.1
COORDINATES: similar to AA sequence:RefSeq:WP_015364240.1
COORDINATES: similar to AA sequence:RefSeq:WP_012412274.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_012412920.1
COORDINATES: similar to AA sequence:RefSeq:WP_012412919.1
COORDINATES: similar to AA sequence:RefSeq:WP_011316862.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413175.1
COORDINATES: similar to AA sequence:RefSeq:WP_012412916.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413097.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413096.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413095.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413151.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413150.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413092.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413148.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413147.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413146.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413090.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413088.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413140.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413139.1
COORDINATES: similar to AA sequence:RefSeq:WP_006633167.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012411666.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012413135.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413134.1
COORDINATES: similar to AA sequence:RefSeq:WP_017307411.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413194.1
COORDINATES: protein motif:HMM:NF012422.2
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_011317985.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010996195.1
cache and HAMP domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010996194.1
COORDINATES: similar to AA sequence:RefSeq:WP_017740078.1
COORDINATES: similar to AA sequence:RefSeq:WP_010996192.1
cyclic nucleotide-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015137383.1
COORDINATES: similar to AA sequence:RefSeq:WP_015137384.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
type II toxin-antitoxin system PemK/MazF family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_015144535.1
type II toxin-antitoxin system VapC family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_015144536.1
COORDINATES: protein motif:HMM:NF016486.2
GO:0005576 - extracellular region [Evidence IEA]
GO:0042742 - defense response to bacterium [Evidence IEA]
COORDINATES: protein motif:HMM:NF015983.2
GO:0003824 - catalytic activity [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011317977.1
NHLP bacteriocin system secretion protein
COORDINATES: similar to AA sequence:RefSeq:WP_011317976.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]
GO:0006508 - proteolysis [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
NHLP family bacteriocin export ABC transporter peptidase/permease/ATPase subunit
COORDINATES: similar to AA sequence:RefSeq:WP_010996181.1
GO:0015440 - ABC-type peptide transporter activity [Evidence IEA]
GO:0043213 - bacteriocin transport [Evidence IEA]
NHLP bacteriocin export ABC transporter permease/ATPase subunit
COORDINATES: similar to AA sequence:RefSeq:WP_015186396.1
COORDINATES: similar to AA sequence:RefSeq:WP_011316592.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413126.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012413125.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413124.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413123.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413122.1
COORDINATES: similar to AA sequence:RefSeq:WP_019494965.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413121.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413120.1
COORDINATES: similar to AA sequence:RefSeq:WP_011316568.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413117.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413226.1
COORDINATES: protein motif:HMM:NF012774.2
COORDINATES: similar to AA sequence:RefSeq:WP_019488884.1
GO:0003743 - translation initiation factor activity [Evidence IEA]
GO:0006413 - translational initiation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012413233.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413104.1
COORDINATES: similar to AA sequence:RefSeq:WP_015160291.1
COORDINATES: similar to AA sequence:RefSeq:WP_012407620.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
Tn3-like element ISNpu13 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_019496035.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019496517.1
COORDINATES: protein motif:HMM:NF015406.2
COORDINATES: similar to AA sequence:RefSeq:WP_010999583.1
Mo-dependent nitrogenase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012409620.1
COORDINATES: similar to AA sequence:RefSeq:WP_012792400.1
COORDINATES: similar to AA sequence:RefSeq:WP_008242439.1
type 1 glutamine amidotransferase domain-containing protein
COORDINATES: protein motif:HMM:NF024754.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024642.2
COORDINATES: protein motif:HMM:TIGR00614.1
GO:0004386 - helicase activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009630080.1
COORDINATES: similar to AA sequence:RefSeq:WP_006277080.1
COORDINATES: similar to AA sequence:RefSeq:WP_015163164.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016948776.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015211749.1
COORDINATES: similar to AA sequence:RefSeq:WP_015197943.1
SAV_2336 N-terminal domain-related protein
COORDINATES: similar to AA sequence:RefSeq:WP_019496818.1
COORDINATES: similar to AA sequence:RefSeq:WP_019496817.1
COORDINATES: similar to AA sequence:RefSeq:WP_015225264.1
COORDINATES: similar to AA sequence:RefSeq:WP_015182607.1
COORDINATES: similar to AA sequence:RefSeq:WP_015162557.1
COORDINATES: similar to AA sequence:RefSeq:WP_011316301.1
COORDINATES: similar to AA sequence:RefSeq:WP_006197187.1
COORDINATES: similar to AA sequence:RefSeq:WP_019488460.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413045.1
COORDINATES: similar to AA sequence:RefSeq:WP_010999696.1
COORDINATES: similar to AA sequence:RefSeq:WP_006197193.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413043.1
COORDINATES: protein motif:HMM:NF016283.2
COORDINATES: similar to AA sequence:RefSeq:WP_012413258.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413040.1
COORDINATES: similar to AA sequence:RefSeq:WP_011316375.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413038.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413037.1
alpha-ketoglutarate-dependent dioxygenase AlkB
COORDINATES: protein motif:HMM:NF022019.2
COORDINATES: similar to AA sequence:RefSeq:WP_012413036.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413266.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003678 - DNA helicase activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
DnaB-like helicase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011316618.1
COORDINATES: protein motif:HMM:NF012372.2
GO:0008168 - methyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024954.2
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF024751.2
COORDINATES: similar to AA sequence:RefSeq:WP_076612256.1
COORDINATES: similar to AA sequence:RefSeq:WP_017322564.1
GO:0008299 - isoprenoid biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008300425.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413270.1
COORDINATES: similar to AA sequence:RefSeq:WP_006195886.1
COORDINATES: protein motif:HMM:NF018815.2
COORDINATES: similar to AA sequence:RefSeq:WP_016869752.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: protein motif:HMM:NF013080.2
COORDINATES: similar to AA sequence:RefSeq:WP_017307599.1
COORDINATES: similar to AA sequence:RefSeq:WP_015364272.1
COORDINATES: similar to AA sequence:RefSeq:WP_016871571.1
COORDINATES: similar to AA sequence:RefSeq:WP_015364270.1
COORDINATES: similar to AA sequence:RefSeq:WP_017656165.1
COORDINATES: similar to AA sequence:RefSeq:WP_012412053.1
IS701-like element ISNpu6 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_012413290.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012593725.1
COORDINATES: similar to AA sequence:RefSeq:WP_015123825.1
COORDINATES: similar to AA sequence:RefSeq:WP_017287500.1
COORDINATES: protein motif:HMM:NF014430.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015163001.1
COORDINATES: protein motif:HMM:NF014385.2
COORDINATES: protein motif:HMM:TIGR01730.1
GO:0005215 - transporter activity [Evidence IEA]
efflux RND transporter periplasmic adaptor subunit
COORDINATES: protein motif:HMM:NF013069.2
COORDINATES: protein motif:HMM:NF014625.2
COORDINATES: similar to AA sequence:RefSeq:WP_015167972.1
GO:0016757 - glycosyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006196761.1
GO:0019867 - outer membrane [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015193577.1
COORDINATES: similar to AA sequence:RefSeq:WP_017656170.1
COORDINATES: similar to AA sequence:RefSeq:WP_008878010.1
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015144396.1
COORDINATES: similar to AA sequence:RefSeq:WP_017307575.1
COORDINATES: protein motif:HMM:NF019928.2
COORDINATES: similar to AA sequence:RefSeq:WP_007904002.1
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_010999657.1
COORDINATES: similar to AA sequence:RefSeq:WP_010999810.1
COORDINATES: similar to AA sequence:RefSeq:WP_012409667.1
COORDINATES: similar to AA sequence:RefSeq:WP_019495045.1
COORDINATES: similar to AA sequence:RefSeq:WP_012409668.1
COORDINATES: similar to AA sequence:RefSeq:WP_011316437.1
COORDINATES: similar to AA sequence:RefSeq:WP_015217662.1
COORDINATES: similar to AA sequence:RefSeq:WP_011316482.1
COORDINATES: similar to AA sequence:RefSeq:WP_011316416.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413305.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF017658.2
filamentous hemagglutinin N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF015803.2
ShlB/FhaC/HecB family hemolysin secretion/activation protein
COORDINATES: protein motif:HMM:NF024180.2
COORDINATES: similar to AA sequence:RefSeq:WP_017307996.1
GO:0004672 - protein kinase activity [Evidence IEA]
GO:0006468 - protein phosphorylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF013124.2
COORDINATES: similar to AA sequence:RefSeq:WP_010999782.1
COORDINATES: similar to AA sequence:RefSeq:WP_015217692.1
COORDINATES: similar to AA sequence:RefSeq:WP_016864074.1
COORDINATES: similar to AA sequence:RefSeq:WP_011316331.1
COORDINATES: similar to AA sequence:RefSeq:WP_010999759.1
COORDINATES: similar to AA sequence:RefSeq:WP_015163127.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413318.1
COORDINATES: similar to AA sequence:RefSeq:WP_011316314.1
COORDINATES: similar to AA sequence:RefSeq:WP_011316315.1
COORDINATES: similar to AA sequence:RefSeq:WP_011316316.1
COORDINATES: similar to AA sequence:RefSeq:WP_010999765.1
COORDINATES: similar to AA sequence:RefSeq:WP_011316318.1
COORDINATES: similar to AA sequence:RefSeq:WP_011316319.1
COORDINATES: similar to AA sequence:RefSeq:WP_010999768.1
type IV secretion system DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010999769.1
COORDINATES: similar to AA sequence:RefSeq:WP_009457350.1
COORDINATES: similar to AA sequence:RefSeq:WP_010999770.1
COORDINATES: similar to AA sequence:RefSeq:WP_011316323.1
COORDINATES: similar to AA sequence:RefSeq:WP_010999772.1
COORDINATES: similar to AA sequence:RefSeq:WP_011316325.1
COORDINATES: similar to AA sequence:RefSeq:WP_010999774.1
COORDINATES: similar to AA sequence:RefSeq:WP_010999775.1
COORDINATES: similar to AA sequence:RefSeq:WP_010999776.1
COORDINATES: similar to AA sequence:RefSeq:WP_010999777.1
COORDINATES: similar to AA sequence:RefSeq:WP_010999778.1
COORDINATES: protein motif:HMM:NF014678.2
COORDINATES: similar to AA sequence:RefSeq:WP_012410985.1
COORDINATES: similar to AA sequence:RefSeq:WP_010999755.1
COORDINATES: similar to AA sequence:RefSeq:WP_010999754.1
COORDINATES: similar to AA sequence:RefSeq:WP_015163073.1
COORDINATES: similar to AA sequence:RefSeq:WP_010999752.1
COORDINATES: similar to AA sequence:RefSeq:WP_010999749.1
COORDINATES: similar to AA sequence:RefSeq:WP_011316343.1
COORDINATES: similar to AA sequence:RefSeq:WP_015364294.1
COORDINATES: similar to AA sequence:RefSeq:WP_015364293.1
COORDINATES: protein motif:HMM:NF024824.2
COORDINATES: similar to AA sequence:RefSeq:WP_011316403.1
COORDINATES: similar to AA sequence:RefSeq:WP_017310925.1
COORDINATES: similar to AA sequence:RefSeq:WP_009631975.1
methyltransferase domain-containing protein
COORDINATES: protein motif:HMM:NF012798.2
COORDINATES: similar to AA sequence:RefSeq:WP_015173915.1
COORDINATES: similar to AA sequence:RefSeq:WP_015196087.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015128576.1
COORDINATES: similar to AA sequence:RefSeq:WP_017318283.1