Nostoc punctiforme PCC 73102 plasmid pNPUN03, complete sequence.
Nostoc punctiforme PCC 73102 (Nostoc punctiforme ATCC 29133)
Bacteria; Cyanobacteriota; Cyanophyceae; Nostocales; Nostocaceae; Nostoc.
Complete sequence of plasmid3 of Nostoc punctiforme ATCC 29133
Submitted (07-APR-2008) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP001040.1.\nURL -- http://www.jgi.doe.gov\nJGI Project ID: 2351359\nSource DNA available from John C. Meeks (jcMeeks@ucdavis.edu)\nBacteria available from ATCC: ATCC 29133\nContacts: John C. Meeks (jcMeeks@ucdavis.edu)\n David Bruce (microbes@cuba.jgi-psf.org)\nQuality assurance done by JGI-Stanford\nAnnotation done by JGI-ORNL and JGI-PGF\nFinishing done by JGI-LLNL\nFinished microbial genomes have been curated to close all gaps with\ngreater than 98% coverage of at least two independent clones. Each\nbase pair has a minimum q (quality) value of 30 and the total error\nrate is less than one per 50000.\nThe JGI and collaborators endorse the principles for the\ndistribution and use of large scale sequencing data adopted by the\nlarger genome sequencing community and urge users of this data to\nfollow them. it is our intention to publish the work of this\nproject in a timely fashion and we welcome collaborative\ninteraction on the project and analysis.\n(http://www.genome.gov/page.cfm?pageID=10506376).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/11/2023 10:59:08\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 7,706\nCDSs (total) :: 7,606\nGenes (coding) :: 7,283\nCDSs (with protein) :: 7,283\nGenes (RNA) :: 100\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 84\nncRNAs :: 4\nPseudo Genes (total) :: 323\nCDSs (without protein) :: 323\nPseudo Genes (ambiguous residues) :: 0 of 323\nPseudo Genes (frameshifted) :: 142 of 323\nPseudo Genes (incomplete) :: 185 of 323\nPseudo Genes (internal stop) :: 92 of 323\nPseudo Genes (multiple problems) :: 85 of 323\nCRISPR Arrays :: 6\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_196249246.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010994086.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010994087.1
COORDINATES: similar to AA sequence:RefSeq:WP_010994088.1
COORDINATES: similar to AA sequence:RefSeq:WP_010994090.1
COORDINATES: similar to AA sequence:RefSeq:WP_010994092.1
COORDINATES: similar to AA sequence:RefSeq:WP_010994093.1
COORDINATES: similar to AA sequence:RefSeq:WP_010994094.1
COORDINATES: similar to AA sequence:RefSeq:WP_010994095.1
type IV secretion system DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017307973.1
COORDINATES: similar to AA sequence:RefSeq:WP_010994097.1
COORDINATES: similar to AA sequence:RefSeq:WP_010994098.1
COORDINATES: similar to AA sequence:RefSeq:WP_012412952.1
COORDINATES: similar to AA sequence:RefSeq:WP_012412953.1
COORDINATES: similar to AA sequence:RefSeq:WP_012412954.1
COORDINATES: similar to AA sequence:RefSeq:WP_010994103.1
COORDINATES: similar to AA sequence:RefSeq:WP_010994104.1
COORDINATES: similar to AA sequence:RefSeq:WP_010994105.1
COORDINATES: similar to AA sequence:RefSeq:WP_019496517.1
COORDINATES: similar to AA sequence:RefSeq:WP_019496035.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012407620.1
GO:0004803 - transposase activity [Evidence IEA]
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
Tn3-like element ISNpu13 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_010994106.1
COORDINATES: similar to AA sequence:RefSeq:WP_010994109.1
COORDINATES: similar to AA sequence:RefSeq:WP_012412870.1
COORDINATES: similar to AA sequence:RefSeq:WP_015213402.1
COORDINATES: similar to AA sequence:RefSeq:WP_017313938.1
COORDINATES: similar to AA sequence:RefSeq:WP_015217825.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413361.1
COORDINATES: similar to AA sequence:RefSeq:WP_010994112.1
COORDINATES: similar to AA sequence:RefSeq:WP_017655402.1
COORDINATES: similar to AA sequence:RefSeq:WP_010994114.1
COORDINATES: similar to AA sequence:RefSeq:WP_010994116.1
COORDINATES: similar to AA sequence:RefSeq:WP_017308775.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611860.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010994119.1
COORDINATES: similar to AA sequence:RefSeq:WP_015119983.1
COORDINATES: protein motif:HMM:NF012907.2
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015140174.1
COORDINATES: protein motif:HMM:NF017658.2
filamentous hemagglutinin N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF012300.2
COORDINATES: similar to AA sequence:RefSeq:WP_015119982.1
COORDINATES: similar to AA sequence:RefSeq:WP_015140183.1
COORDINATES: similar to AA sequence:RefSeq:WP_017741641.1
sigma-70 family RNA polymerase sigma factor
COORDINATES: protein motif:HMM:NF024298.2
COORDINATES: similar to AA sequence:RefSeq:WP_015173924.1
COORDINATES: similar to AA sequence:RefSeq:WP_012161282.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015155389.1
COORDINATES: similar to AA sequence:RefSeq:WP_012412898.1
COORDINATES: similar to AA sequence:RefSeq:WP_010994061.1
COORDINATES: similar to AA sequence:RefSeq:WP_010994062.1
COORDINATES: similar to AA sequence:RefSeq:WP_015144086.1
COORDINATES: similar to AA sequence:RefSeq:WP_017655423.1
COORDINATES: similar to AA sequence:RefSeq:WP_015208870.1
type II toxin-antitoxin system VapC family toxin
COORDINATES: protein motif:HMM:NF012863.2
COORDINATES: protein motif:HMM:NF003417.0
COORDINATES: similar to AA sequence:RefSeq:WP_015209746.1
COORDINATES: protein motif:HMM:NF012711.2
COORDINATES: protein motif:HMM:NF017416.2
COORDINATES: protein motif:HMM:NF013752.2
COORDINATES: similar to AA sequence:RefSeq:WP_010999803.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611833.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012413364.1
COORDINATES: similar to AA sequence:RefSeq:WP_019494037.1
COORDINATES: similar to AA sequence:RefSeq:WP_011316362.1
COORDINATES: similar to AA sequence:RefSeq:WP_015158998.1
COORDINATES: similar to AA sequence:RefSeq:WP_011316364.1
TnsA endonuclease N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012412793.1
GO:0015074 - DNA integration [Evidence IEA]
DDE-type integrase/transposase/recombinase
COORDINATES: similar to AA sequence:RefSeq:WP_017750178.1
COORDINATES: similar to AA sequence:RefSeq:WP_017750177.1