Edwardsiella tarda strain KC-Pc-HB1 plasmid pEh-Pc1, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Hafniaceae; Edwardsiella.
Complete genome sequence of Edwardsiella tarda KC-Pc-HB1 isolated from the blood of Pseudorca crassidens
Submitted (25-SEP-2017) Infectious Disease Research Center, Korea Research Institute of Bioscience & Biotechnology, 125 Gwahak-ro, Yuseong-gu, Daejeon 34141, Korea, Republic of
REFSEQ INFORMATION: The reference sequence is identical to\nCP023707.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. 3.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 268.0x\nSequencing Technology :: Illumina HiSeq; PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/31/2022 01:18:18\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,444\nCDSs (total) :: 3,311\nGenes (coding) :: 3,273\nCDSs (with protein) :: 3,273\nGenes (RNA) :: 133\nrRNAs :: 10, 9, 9 (5S, 16S, 23S)\ncomplete rRNAs :: 10, 9, 9 (5S, 16S, 23S)\ntRNAs :: 101\nncRNAs :: 4\nPseudo Genes (total) :: 38\nCDSs (without protein) :: 38\nPseudo Genes (ambiguous residues) :: 0 of 38\nPseudo Genes (frameshifted) :: 15 of 38\nPseudo Genes (incomplete) :: 27 of 38\nPseudo Genes (internal stop) :: 17 of 38\nPseudo Genes (multiple problems) :: 16 of 38\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_004722026.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF022590.2
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_086558160.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006460726.1
COORDINATES: similar to AA sequence:RefSeq:WP_019077272.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_001647051.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_004883363.1
IS21-like element ISEc10 family helper ATPase IstB
COORDINATES: similar to AA sequence:RefSeq:WP_000016497.1
COORDINATES: similar to AA sequence:RefSeq:WP_020801688.1
COORDINATES: protein motif:HMM:TIGR02384.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
type II toxin-antitoxin system RelB/DinJ family antitoxin
COORDINATES: protein motif:HMM:NF019371.2
COORDINATES: similar to AA sequence:RefSeq:WP_013578371.1
COORDINATES: similar to AA sequence:RefSeq:WP_001710756.1
S-4TM family putative pore-forming effector
COORDINATES: similar to AA sequence:RefSeq:YP_005229629.1
type II toxin-antitoxin system VapB family antitoxin
COORDINATES: similar to AA sequence:RefSeq:YP_005229630.1
type II toxin-antitoxin system VapC family toxin
COORDINATES: protein motif:HMM:NF012772.2
COORDINATES: similar to AA sequence:RefSeq:WP_000017065.1
COORDINATES: similar to AA sequence:RefSeq:WP_000932014.1
COORDINATES: similar to AA sequence:RefSeq:WP_000758129.1
COORDINATES: similar to AA sequence:RefSeq:WP_000704731.1
COORDINATES: similar to AA sequence:RefSeq:WP_000751748.1
COORDINATES: similar to AA sequence:RefSeq:WP_000753462.1
COORDINATES: similar to AA sequence:RefSeq:WP_000044488.1
COORDINATES: similar to AA sequence:RefSeq:WP_001558341.1
COORDINATES: similar to AA sequence:RefSeq:WP_012439927.1
COORDINATES: similar to AA sequence:RefSeq:WP_000588735.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_076611450.1
GO:0015074 - DNA integration [Evidence IEA]
internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
integrase core domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011427315.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_000904941.1
internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011147726.1
Rpn family recombination-promoting nuclease/putative transposase
COORDINATES: similar to AA sequence:RefSeq:WP_000012961.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_000878026.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF015479.2
colicin-like bacteriocin tRNase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019455153.1
COORDINATES: similar to AA sequence:RefSeq:WP_012000724.1
COORDINATES: protein motif:HMM:NF010317.0
COORDINATES: similar to AA sequence:RefSeq:WP_020316631.1
type-F conjugative transfer system pilin acetylase TraX
COORDINATES: similar to AA sequence:RefSeq:WP_001463032.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0003678 - DNA helicase activity [Evidence IEA]; GO:0016818 - hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides [Evidence IEA]
conjugative transfer relaxase/helicase TraI
COORDINATES: similar to AA sequence:RefSeq:NP_858379.1
COORDINATES: similar to AA sequence:RefSeq:WP_006122272.1
GO:0004540 - ribonuclease activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF010254.0
type IV conjugative transfer system coupling protein TraD
COORDINATES: similar to AA sequence:RefSeq:WP_013609534.1
conjugal transfer mating-pair stabilization protein TraG
COORDINATES: similar to AA sequence:RefSeq:WP_016831054.1
conjugal transfer pilus assembly protein TraH
COORDINATES: similar to AA sequence:RefSeq:WP_009309876.1
type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB
COORDINATES: similar to AA sequence:RefSeq:WP_009309875.1
type-F conjugative transfer system pilin chaperone TraQ
COORDINATES: similar to AA sequence:RefSeq:WP_001746545.1
type-F conjugative transfer system pilin assembly protein TraF
COORDINATES: similar to AA sequence:RefSeq:WP_014411940.1
type-F conjugative transfer system mating-pair stabilization protein TraN
COORDINATES: similar to AA sequence:RefSeq:WP_001568086.1
type-F conjugative transfer system pilin assembly protein TrbC
COORDINATES: similar to AA sequence:RefSeq:WP_005322002.1
conjugal transfer pilus assembly protein TraU
COORDINATES: similar to AA sequence:RefSeq:WP_020314628.1
type-F conjugative transfer system protein TraW
COORDINATES: similar to AA sequence:RefSeq:WP_000214080.1
type-F conjugative transfer system protein TrbI
COORDINATES: similar to AA sequence:RefSeq:WP_001064255.1
COORDINATES: similar to AA sequence:RefSeq:WP_001526035.1
type IV conjugative transfer system lipoprotein TraV
COORDINATES: similar to AA sequence:RefSeq:WP_001589092.1
F-type conjugal transfer pilus assembly protein TraB
COORDINATES: similar to AA sequence:RefSeq:WP_004152601.1
type-F conjugative transfer system secretin TraK
COORDINATES: similar to AA sequence:RefSeq:WP_016235958.1
type IV conjugative transfer system protein TraE
COORDINATES: similar to AA sequence:RefSeq:YP_005229718.1
type IV conjugative transfer system protein TraL
COORDINATES: similar to AA sequence:RefSeq:WP_020316649.1
type IV conjugative transfer system pilin TraA
COORDINATES: protein motif:HMM:NF017333.2
COORDINATES: similar to AA sequence:RefSeq:WP_000344130.1
GO:0019867 - outer membrane [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_001297768.1
conjugal transfer relaxosome DNA-binding protein TraM
COORDINATES: similar to AA sequence:RefSeq:WP_004197738.1
transglycosylase SLT domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009113447.1
zincin-like metallopeptidase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019843208.1
COORDINATES: similar to AA sequence:RefSeq:WP_001525568.1
COORDINATES: similar to AA sequence:RefSeq:WP_001244368.1
COORDINATES: similar to AA sequence:RefSeq:WP_000117326.1
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:NP_490555.1
COORDINATES: similar to AA sequence:RefSeq:WP_014343512.1
GO:0003697 - single-stranded DNA binding [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]; GO:0006260 - DNA replication [Evidence IEA]; GO:0006351 - DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_001369404.1
COORDINATES: similar to AA sequence:RefSeq:WP_000555355.1
COORDINATES: similar to AA sequence:RefSeq:WP_009654056.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:YP_005229752.1
COORDINATES: similar to AA sequence:RefSeq:WP_001198918.1
COORDINATES: similar to AA sequence:RefSeq:WP_000274511.1
COORDINATES: similar to AA sequence:RefSeq:NP_490548.1
COORDINATES: similar to AA sequence:RefSeq:WP_010260829.1
ParA family plasmid-partitioning AAA ATPase
COORDINATES: similar to AA sequence:RefSeq:WP_001245882.1
COORDINATES: similar to AA sequence:RefSeq:WP_000932975.1