Bartonella grahamii as4aup plasmid pBGR3, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Bartonellaceae; Bartonella.
Run-off replication of host-adaptability genes is associated with gene transfer agents in the genome of mouse-infecting Bartonella grahamii
Submitted (26-MAR-2009) Department of Molecular Evolution, Uppsala University, Norbyvagen 18C, Uppsala 75236, Sweden
REFSEQ INFORMATION: The reference sequence is identical to\nCP001563.1.\nBacteria available from Siv Andersson, siv.andersson@ebc.uu.se.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/12/2023 11:07:28\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,015\nCDSs (total) :: 1,963\nGenes (coding) :: 1,885\nCDSs (with protein) :: 1,885\nGenes (RNA) :: 52\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 42\nncRNAs :: 4\nPseudo Genes (total) :: 78\nCDSs (without protein) :: 78\nPseudo Genes (ambiguous residues) :: 0 of 78\nPseudo Genes (frameshifted) :: 47 of 78\nPseudo Genes (incomplete) :: 41 of 78\nPseudo Genes (internal stop) :: 28 of 78\nPseudo Genes (multiple problems) :: 27 of 78\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_005774741.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007348006.1
type II toxin-antitoxin system VapC family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_004857191.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017196502.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_007348001.1
COORDINATES: similar to AA sequence:RefSeq:WP_005774644.1
COORDINATES: similar to AA sequence:RefSeq:WP_015856920.1
COORDINATES: similar to AA sequence:RefSeq:WP_012755109.1
VirB4 family type IV secretion/conjugal transfer ATPase
COORDINATES: similar to AA sequence:RefSeq:WP_004861385.1
COORDINATES: similar to AA sequence:RefSeq:WP_012755111.1
COORDINATES: similar to AA sequence:RefSeq:WP_004861390.1
COORDINATES: similar to AA sequence:RefSeq:WP_005774630.1
COORDINATES: similar to AA sequence:RefSeq:WP_015856929.1
COORDINATES: similar to AA sequence:RefSeq:WP_005775234.1
P-type conjugative transfer protein VirB9
COORDINATES: similar to AA sequence:RefSeq:WP_005775233.1
COORDINATES: similar to AA sequence:RefSeq:WP_004857222.1
GO:0043684 - type IV secretion system complex [Evidence IEA]
GO:0044097 - secretion by the type IV secretion system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005864571.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
type II toxin-antitoxin system RelB/DinJ family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_015856933.1
COORDINATES: similar to AA sequence:RefSeq:WP_006590446.1
COORDINATES: similar to AA sequence:RefSeq:WP_019223231.1
Ti-type conjugative transfer relaxase TraA
COORDINATES: similar to AA sequence:RefSeq:WP_004861324.1
COORDINATES: similar to AA sequence:RefSeq:WP_019223233.1
COORDINATES: similar to AA sequence:RefSeq:WP_012755124.1
Ti-type conjugative transfer system protein TraG
COORDINATES: similar to AA sequence:RefSeq:WP_015398983.1
GO:0006260 - DNA replication [Evidence IEA]; GO:0006276 - plasmid maintenance [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012755126.1
type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family
COORDINATES: similar to AA sequence:RefSeq:WP_005864567.1
COORDINATES: similar to AA sequence:RefSeq:WP_005864563.1
COORDINATES: similar to AA sequence:RefSeq:WP_007478073.1
COORDINATES: similar to AA sequence:RefSeq:WP_004857210.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_004857207.1
COORDINATES: similar to AA sequence:RefSeq:WP_005864560.1