Erwinia billingiae Eb661 plasmid pEB170, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Erwiniaceae; Erwinia.
Genome comparison of the epiphytic bacteria Erwinia billingiae and E. tasmaniensis with the pear pathogen E. pyrifoliae
Submitted (11-MAR-2009) Max Planck Institute for Molecular Genetics, proScience Ihnestrasse 73, D-14195 Berlin, Germany
REFSEQ INFORMATION: The reference sequence is identical to\nFP236830.1.\nThis project was carried out by\n*Max Planck Institute for Molecular Genetics, Berlin, Germany\n (principle investigator);\n-------------- Genome Center\n Center: Max Planck Institute for Molecular Genetics\n Center code: MPIMG\n--------------.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/24/2022 02:22:12\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,983\nCDSs (total) :: 4,878\nGenes (coding) :: 4,820\nCDSs (with protein) :: 4,820\nGenes (RNA) :: 105\nrRNAs :: 7, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 7, 7, 7 (5S, 16S, 23S)\ntRNAs :: 77\nncRNAs :: 7\nPseudo Genes (total) :: 58\nCDSs (without protein) :: 58\nPseudo Genes (ambiguous residues) :: 0 of 58\nPseudo Genes (frameshifted) :: 27 of 58\nPseudo Genes (incomplete) :: 30 of 58\nPseudo Genes (internal stop) :: 15 of 58\nPseudo Genes (multiple problems) :: 12 of 58\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_009309889.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014695905.1
COORDINATES: similar to AA sequence:RefSeq:WP_002211098.1
COORDINATES: similar to AA sequence:RefSeq:WP_004961896.1
COORDINATES: protein motif:HMM:NF018381.2
COORDINATES: protein motif:HMM:NF013964.2
GO:0004519 - endonuclease activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004168414.1
COORDINATES: similar to AA sequence:RefSeq:WP_014333214.1
COORDINATES: similar to AA sequence:RefSeq:WP_086558178.1
GO:0004803 - transposase activity [Evidence IEA]
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_009637258.1
COORDINATES: similar to AA sequence:RefSeq:WP_004193786.1
COORDINATES: similar to AA sequence:RefSeq:WP_011846847.1
COORDINATES: protein motif:HMM:NF012780.2
COORDINATES: similar to AA sequence:RefSeq:WP_017802646.1
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_009112149.1
COORDINATES: similar to AA sequence:RefSeq:WP_007708126.1
COORDINATES: similar to AA sequence:RefSeq:WP_000755141.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008924801.1
GO:0004325 - ferrochelatase activity [Evidence IEA]
GO:0006779 - porphyrin-containing compound biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010259857.1
internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010488850.1
COORDINATES: similar to AA sequence:RefSeq:YP_005229637.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018404740.1
GO:0018784 - (S)-2-haloacid dehalogenase activity [Evidence IEA]
GO:0006805 - xenobiotic metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF021524.2
COORDINATES: similar to AA sequence:RefSeq:WP_017802599.1
COORDINATES: similar to AA sequence:RefSeq:WP_013512050.1
COORDINATES: similar to AA sequence:RefSeq:WP_013199858.1
COORDINATES: similar to AA sequence:RefSeq:WP_017802792.1
COORDINATES: similar to AA sequence:RefSeq:WP_013199861.1
COORDINATES: protein motif:HMM:NF013736.2
COORDINATES: protein motif:HMM:NF012772.2
COORDINATES: similar to AA sequence:RefSeq:WP_013199903.1
sensor domain-containing diguanylate cyclase
COORDINATES: similar to AA sequence:RefSeq:WP_017802798.1
sensor domain-containing phosphodiesterase
COORDINATES: similar to AA sequence:RefSeq:WP_013199900.1
COORDINATES: similar to AA sequence:RefSeq:WP_017802800.1
COORDINATES: similar to AA sequence:RefSeq:WP_014606883.1
GO:0007165 - signal transduction [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013027297.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_076611340.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013096685.1
COORDINATES: similar to AA sequence:RefSeq:WP_005127204.1
COORDINATES: similar to AA sequence:RefSeq:WP_012441647.1
COORDINATES: protein motif:HMM:NF022255.2
GO:0071468 - cellular response to acidic pH [Evidence IEA]
biofilm development regulator YmgB/AriR family protein
COORDINATES: similar to AA sequence:RefSeq:WP_004571361.1
COORDINATES: similar to AA sequence:RefSeq:WP_006660040.1
COORDINATES: similar to AA sequence:RefSeq:WP_020078826.1
COORDINATES: similar to AA sequence:RefSeq:WP_013357653.1
PAS domain-containing methyl-accepting chemotaxis protein
COORDINATES: similar to AA sequence:RefSeq:WP_013199869.1
COORDINATES: similar to AA sequence:RefSeq:WP_013199868.1
COORDINATES: similar to AA sequence:RefSeq:WP_017802797.1
COORDINATES: similar to AA sequence:RefSeq:WP_013199864.1
COORDINATES: similar to AA sequence:RefSeq:WP_013360201.1
COORDINATES: similar to AA sequence:RefSeq:WP_013511995.1
COORDINATES: similar to AA sequence:RefSeq:WP_017802789.1
COORDINATES: similar to AA sequence:RefSeq:WP_009093223.1
COORDINATES: similar to AA sequence:RefSeq:WP_004187098.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013202751.1
COORDINATES: protein motif:HMM:NF023665.2
COORDINATES: similar to AA sequence:RefSeq:WP_017802794.1
COORDINATES: similar to AA sequence:RefSeq:WP_008926786.1
COORDINATES: similar to AA sequence:RefSeq:YP_005227341.1
GO:0019152 - acetoin dehydrogenase activity [Evidence IEA]
GO:0045150 - acetoin catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF020036.2
COORDINATES: protein motif:HMM:NF012245.2
COORDINATES: protein motif:HMM:NF013713.2
COORDINATES: similar to AA sequence:RefSeq:WP_007762557.1
COORDINATES: similar to AA sequence:RefSeq:WP_010615689.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_013511965.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013511966.1
carbon-nitrogen hydrolase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_017708234.1
phenylacetaldoxime dehydratase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013511967.1
COORDINATES: similar to AA sequence:RefSeq:WP_000830285.1
COORDINATES: similar to AA sequence:RefSeq:WP_010259115.1
COORDINATES: similar to AA sequence:RefSeq:WP_014606035.1
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007888281.1
COORDINATES: similar to AA sequence:RefSeq:WP_004391809.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
Fe(3+)-hydroxamate ABC transporter permease FhuB
COORDINATES: protein motif:HMM:NF013648.2
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_004391810.1
GO:0019867 - outer membrane [Evidence IEA]
GO:0015343 - siderophore-iron transmembrane transporter activity [Evidence IEA]
GO:0015891 - siderophore transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004391811.1
COORDINATES: similar to AA sequence:RefSeq:WP_004391812.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
sigma-70 family RNA polymerase sigma factor
COORDINATES: similar to AA sequence:RefSeq:WP_000725191.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_019105436.1
COORDINATES: similar to AA sequence:RefSeq:WP_013512567.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611477.1
COORDINATES: similar to AA sequence:RefSeq:WP_009639367.1
AbrB/MazE/SpoVT family DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_000254738.1
COORDINATES: similar to AA sequence:RefSeq:WP_016857787.1
COORDINATES: similar to AA sequence:RefSeq:WP_000864791.1
COORDINATES: similar to AA sequence:RefSeq:WP_013036360.1
GO:0003684 - damaged DNA binding [Evidence IEA]
translesion error-prone DNA polymerase V subunit UmuC
COORDINATES: similar to AA sequence:RefSeq:WP_010260379.1
translesion error-prone DNA polymerase V autoproteolytic subunit
COORDINATES: similar to AA sequence:RefSeq:WP_013578325.1
COORDINATES: similar to AA sequence:RefSeq:WP_011872576.1
COORDINATES: similar to AA sequence:RefSeq:WP_013574966.1
COORDINATES: similar to AA sequence:RefSeq:WP_020885163.1
COORDINATES: similar to AA sequence:RefSeq:WP_008102113.1
COORDINATES: similar to AA sequence:RefSeq:WP_013199982.1
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003419203.1
COORDINATES: similar to AA sequence:RefSeq:WP_004272246.1
COORDINATES: similar to AA sequence:RefSeq:NP_052645.1
COORDINATES: similar to AA sequence:RefSeq:WP_001104903.1
COORDINATES: similar to AA sequence:RefSeq:WP_008322847.1
COORDINATES: similar to AA sequence:RefSeq:WP_019105022.1
COORDINATES: similar to AA sequence:RefSeq:WP_016495620.1
COORDINATES: protein motif:HMM:NF014273.2
COORDINATES: protein motif:HMM:NF018636.2
COORDINATES: similar to AA sequence:RefSeq:WP_004198570.1
COORDINATES: protein motif:HMM:NF039307.1
COORDINATES: similar to AA sequence:RefSeq:WP_014695867.1
lytic transglycosylase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014695868.1
COORDINATES: similar to AA sequence:RefSeq:WP_004158771.1
HAMP domain-containing sensor histidine kinase
COORDINATES: similar to AA sequence:RefSeq:WP_013811129.1
COORDINATES: similar to AA sequence:RefSeq:WP_019456441.1
COORDINATES: similar to AA sequence:RefSeq:WP_019106283.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014695870.1
type IV conjugative transfer system pilin TraA
COORDINATES: similar to AA sequence:RefSeq:WP_013512869.1
type IV conjugative transfer system protein TraL
COORDINATES: similar to AA sequence:RefSeq:WP_019105070.1
TraE/TraK family type IV conjugative transfer system protein
COORDINATES: similar to AA sequence:RefSeq:WP_019106287.1
type-F conjugative transfer system secretin TraK
COORDINATES: similar to AA sequence:RefSeq:WP_013512872.1
F-type conjugal transfer pilus assembly protein TraB
COORDINATES: protein motif:HMM:NF006534.0
transcription/translation regulatory transformer protein RfaH
COORDINATES: similar to AA sequence:RefSeq:WP_013512876.1
COORDINATES: similar to AA sequence:RefSeq:WP_014695879.1
type IV conjugative transfer system lipoprotein TraV
COORDINATES: similar to AA sequence:RefSeq:WP_019106295.1
COORDINATES: similar to AA sequence:RefSeq:WP_011899428.1
type-F conjugative transfer system protein TrbI
COORDINATES: similar to AA sequence:RefSeq:WP_019106297.1
type-F conjugative transfer system protein TraW
COORDINATES: similar to AA sequence:RefSeq:WP_014063885.1
COORDINATES: similar to AA sequence:RefSeq:WP_019104690.1
conjugal transfer pilus assembly protein TraU
COORDINATES: similar to AA sequence:RefSeq:WP_019104691.1
type-F conjugative transfer system pilin assembly protein TrbC
COORDINATES: similar to AA sequence:RefSeq:WP_013512214.1
type-F conjugative transfer system mating-pair stabilization protein TraN
COORDINATES: similar to AA sequence:RefSeq:WP_019105773.1
type-F conjugative transfer system pilin assembly protein TraF
COORDINATES: similar to AA sequence:RefSeq:WP_019105776.1
type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB
COORDINATES: similar to AA sequence:RefSeq:WP_019104696.1
COORDINATES: similar to AA sequence:RefSeq:WP_013512221.1
conjugal transfer pilus assembly protein TraH
COORDINATES: similar to AA sequence:RefSeq:WP_019105779.1
conjugal transfer mating-pair stabilization protein TraG
COORDINATES: similar to AA sequence:RefSeq:WP_019105780.1
COORDINATES: similar to AA sequence:RefSeq:WP_013512224.1
COORDINATES: similar to AA sequence:RefSeq:WP_014695900.1
type IV conjugative transfer system coupling protein TraD
COORDINATES: similar to AA sequence:RefSeq:WP_013511888.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0003678 - DNA helicase activity [Evidence IEA]; GO:0016818 - hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides [Evidence IEA]
conjugative transfer relaxase/helicase TraI
COORDINATES: similar to AA sequence:RefSeq:WP_004152106.1
Hha/YmoA family nucleoid-associated regulatory protein
COORDINATES: similar to AA sequence:RefSeq:WP_011906583.1
COORDINATES: similar to AA sequence:RefSeq:WP_011201827.1