Erwinia billingiae Eb661 plasmid pEB102, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Erwiniaceae; Erwinia.
Genome comparison of the epiphytic bacteria Erwinia billingiae and E. tasmaniensis with the pear pathogen E. pyrifoliae
Submitted (11-MAR-2009) Max Planck Institute for Molecular Genetics, proScience Ihnestrasse 73, D-14195 Berlin, Germany
REFSEQ INFORMATION: The reference sequence is identical to\nFP236826.1.\nThis project was carried out by\n*Max Planck Institute for Molecular Genetics, Berlin, Germany\n (principle investigator);\n-------------- Genome Center\n Center: Max Planck Institute for Molecular Genetics\n Center code: MPIMG\n--------------.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/24/2022 02:22:12\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,983\nCDSs (total) :: 4,878\nGenes (coding) :: 4,820\nCDSs (with protein) :: 4,820\nGenes (RNA) :: 105\nrRNAs :: 7, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 7, 7, 7 (5S, 16S, 23S)\ntRNAs :: 77\nncRNAs :: 7\nPseudo Genes (total) :: 58\nCDSs (without protein) :: 58\nPseudo Genes (ambiguous residues) :: 0 of 58\nPseudo Genes (frameshifted) :: 27 of 58\nPseudo Genes (incomplete) :: 30 of 58\nPseudo Genes (internal stop) :: 15 of 58\nPseudo Genes (multiple problems) :: 12 of 58\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_019105453.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017802805.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_017802808.1
COORDINATES: similar to AA sequence:RefSeq:WP_013199719.1
COORDINATES: similar to AA sequence:RefSeq:WP_000981293.1
COORDINATES: protein motif:HMM:NF012792.2
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_001486568.1
COORDINATES: protein motif:HMM:NF027613.2
COORDINATES: similar to AA sequence:RefSeq:WP_008105548.1
COORDINATES: protein motif:HMM:NF016800.2
COORDINATES: similar to AA sequence:RefSeq:WP_009112612.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_019105439.1
GO:0003697 - single-stranded DNA binding [Evidence IEA]
GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO:0018142 - protein-DNA covalent cross-linking [Evidence IEA]
SOS response-associated peptidase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013319377.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007749371.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_001549887.1
COORDINATES: similar to AA sequence:RefSeq:WP_015854781.1
GO:0008794 - arsenate reductase (glutaredoxin) activity [Evidence IEA]
glutaredoxin-dependent arsenate reductase
COORDINATES: similar to AA sequence:RefSeq:WP_014606053.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013199736.1
COORDINATES: similar to AA sequence:RefSeq:WP_010670294.1
COORDINATES: similar to AA sequence:RefSeq:WP_015701125.1
GO:0007165 - signal transduction [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002905003.1
COORDINATES: similar to AA sequence:RefSeq:WP_007688980.1
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_018180643.1
COORDINATES: similar to AA sequence:RefSeq:WP_007015345.1
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_020191363.1
COORDINATES: similar to AA sequence:RefSeq:WP_014216908.1
COORDINATES: similar to AA sequence:RefSeq:WP_017702859.1
COORDINATES: similar to AA sequence:RefSeq:WP_018311105.1
COORDINATES: similar to AA sequence:RefSeq:WP_014341899.1
COORDINATES: similar to AA sequence:RefSeq:WP_013814901.1
Lrp/AsnC family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_014233856.1
COORDINATES: similar to AA sequence:RefSeq:WP_004951510.1
COORDINATES: similar to AA sequence:RefSeq:WP_018603984.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013199755.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013199757.1
conjugal transfer protein TraG N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013199758.1
COORDINATES: similar to AA sequence:RefSeq:WP_013199759.1
COORDINATES: similar to AA sequence:RefSeq:WP_015056519.1
TIGR03756 family integrating conjugative element protein
COORDINATES: similar to AA sequence:RefSeq:WP_013199761.1
TIGR03757 family integrating conjugative element protein
COORDINATES: similar to AA sequence:RefSeq:WP_015056518.1
COORDINATES: similar to AA sequence:RefSeq:WP_015056516.1
GO:0005575 - cellular_component [Evidence IEA]
GO:0008150 - biological_process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007885635.1
GO:0003674 - molecular_function [Evidence IEA]
TIGR03751 family conjugal transfer lipoprotein
COORDINATES: similar to AA sequence:RefSeq:WP_001506261.1
GO:0005886 - plasma membrane [Evidence IEA]
TIGR03752 family integrating conjugative element protein
COORDINATES: similar to AA sequence:RefSeq:WP_013199767.1
TIGR03749 family integrating conjugative element protein
COORDINATES: similar to AA sequence:RefSeq:WP_013199768.1
TIGR03746 family integrating conjugative element protein
COORDINATES: similar to AA sequence:RefSeq:WP_013199769.1
TIGR03750 family conjugal transfer protein
COORDINATES: similar to AA sequence:RefSeq:WP_015056511.1
TIGR03745 family integrating conjugative element membrane protein
COORDINATES: similar to AA sequence:RefSeq:WP_007885647.1
TIGR03758 family integrating conjugative element protein
COORDINATES: similar to AA sequence:RefSeq:WP_007885649.1
RAQPRD family integrative conjugative element protein
COORDINATES: similar to AA sequence:RefSeq:WP_003050276.1
COORDINATES: similar to AA sequence:RefSeq:WP_015056509.1
TIGR03747 family integrating conjugative element membrane protein
COORDINATES: similar to AA sequence:RefSeq:WP_004181875.1
type IV conjugative transfer system coupling protein TraD
COORDINATES: similar to AA sequence:RefSeq:WP_013199776.1
COORDINATES: similar to AA sequence:RefSeq:WP_007885432.1
COORDINATES: similar to AA sequence:RefSeq:WP_004181871.1
lytic transglycosylase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013199779.1
TIGR03759 family integrating conjugative element protein
COORDINATES: similar to AA sequence:RefSeq:WP_007885436.1
COORDINATES: similar to AA sequence:RefSeq:WP_016191740.1
PilL N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012669271.1
COORDINATES: similar to AA sequence:RefSeq:WP_016807972.1
COORDINATES: similar to AA sequence:RefSeq:WP_004115562.1
COORDINATES: similar to AA sequence:RefSeq:WP_016151303.1
COORDINATES: similar to AA sequence:RefSeq:WP_015056502.1
COORDINATES: similar to AA sequence:RefSeq:WP_016151301.1
COORDINATES: similar to AA sequence:RefSeq:WP_013199788.1
TIGR03761 family integrating conjugative element protein
COORDINATES: similar to AA sequence:RefSeq:WP_013199789.1
STY4528 family pathogenicity island replication protein
COORDINATES: similar to AA sequence:RefSeq:WP_007885448.1
COORDINATES: similar to AA sequence:RefSeq:WP_013199791.1
COORDINATES: similar to AA sequence:RefSeq:WP_013199792.1
COORDINATES: similar to AA sequence:RefSeq:WP_013199793.1
SPI-7-type island replicative DNA helicase
COORDINATES: similar to AA sequence:RefSeq:WP_007885455.1
COORDINATES: similar to AA sequence:RefSeq:WP_007885456.1
COORDINATES: similar to AA sequence:RefSeq:WP_013199796.1
COORDINATES: similar to AA sequence:RefSeq:WP_013199797.1
COORDINATES: similar to AA sequence:RefSeq:WP_013199798.1
COORDINATES: similar to AA sequence:RefSeq:WP_013199799.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015056494.1
COORDINATES: similar to AA sequence:RefSeq:WP_015056493.1
COORDINATES: similar to AA sequence:RefSeq:WP_007885463.1
zincin-like metallopeptidase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013199804.1
COORDINATES: similar to AA sequence:RefSeq:WP_015056488.1
COORDINATES: similar to AA sequence:RefSeq:WP_007885470.1
COORDINATES: similar to AA sequence:RefSeq:WP_007885471.1
COORDINATES: similar to AA sequence:RefSeq:WP_017802817.1
COORDINATES: similar to AA sequence:RefSeq:WP_017802816.1
COORDINATES: similar to AA sequence:RefSeq:WP_013199810.1
COORDINATES: similar to AA sequence:RefSeq:WP_013199811.1
COORDINATES: similar to AA sequence:RefSeq:WP_013512849.1
translesion error-prone DNA polymerase V autoproteolytic subunit
COORDINATES: similar to AA sequence:RefSeq:WP_000457546.1
binds processed UmuD protein to form functional DNA pol V (UmuD'2UmuC); involved in translesion polymerization; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010260799.1
COORDINATES: similar to AA sequence:RefSeq:WP_013199813.1
COORDINATES: similar to AA sequence:RefSeq:WP_010260801.1
COORDINATES: similar to AA sequence:RefSeq:WP_010260804.1
COORDINATES: similar to AA sequence:RefSeq:WP_014606793.1
GO:0004619 - phosphoglycerate mutase activity [Evidence IEA]
GO:0006096 - glycolytic process [Evidence IEA]
2,3-bisphosphoglycerate-dependent phosphoglycerate mutase
COORDINATES: similar to AA sequence:RefSeq:WP_010260810.1
GO:0004634 - phosphopyruvate hydratase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010260813.1
COORDINATES: similar to AA sequence:RefSeq:WP_010260815.1
COORDINATES: nucleotide motif:Rfam:14.4:RF01734
Fluoride riboswitches increase expression of downstream genes that help mitigate the toxic effects of very high levels of fluoride; They are found in a wide variety of bacteria and archaea; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_010260817.1
COORDINATES: similar to AA sequence:RefSeq:WP_014594570.1
COORDINATES: similar to AA sequence:RefSeq:WP_013199815.1
beta-propeller fold lactonase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010260381.1
GO:0003684 - damaged DNA binding [Evidence IEA]
translesion error-prone DNA polymerase V subunit UmuC
COORDINATES: similar to AA sequence:RefSeq:WP_019105455.1
COORDINATES: similar to AA sequence:RefSeq:WP_013317264.1