Komagataeibacter medellinensis NBRC 3288 plasmid pGXY020, complete sequence.
Komagataeibacter medellinensis NBRC 3288
Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Komagataeibacter.
Complete genome sequence of NBRC 3288, a unique cellulose-nonproducing strain of Gluconacetobacter xylinus isolated from vinegar
Submitted (13-APR-2011) Contact:Director-General Department of Biotechnology National Institute of Technology and Evaluation, NITE Bioresource Information Center (NBIC), Department of Biotechnology; 2-49-10 Nishihara, Shibuya-ku, Tokyo 151-0066, Japan URL :http://www.bio.nite.go.jp/
REFSEQ INFORMATION: The reference sequence is identical to\nAP012161.1.\n\n\nThis work was done by Gluconacetobacter xylinus genome sequencing\nconsortium\nincluding Department of Microbiology and Immunology, Yamaguchi\nUniversity School of Medicine,\nNational Institute of Technology and Evaluation,\nGenetic Resources Technology, Faculty of Agriculture, Kyushu\nUniversity,\nDepartment of Biological Chemistry, Faculty of Agriculture,\nYamaguchi University and\nMizkan Group Corporation Central Research Institute.\n\nPlease visit our web site.\nURL:http://www.bio.nite.go.jp/\n\nDOGAN ; Database of Genomes Analyzed at NITE\nThe database contains genome sequence data, physical maps and the\ngenomic and proteomic data of the microorganisms analyzed.\nURL:http://www.bio.nite.go.jp/dogan/Top.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nGenome Coverage :: 8x\nSequencing Technology :: Sanger ABI3730\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/24/2022 02:25:10\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,378\nCDSs (total) :: 3,302\nGenes (coding) :: 3,172\nCDSs (with protein) :: 3,172\nGenes (RNA) :: 76\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 57\nncRNAs :: 4\nPseudo Genes (total) :: 130\nCDSs (without protein) :: 130\nPseudo Genes (ambiguous residues) :: 0 of 130\nPseudo Genes (frameshifted) :: 54 of 130\nPseudo Genes (incomplete) :: 105 of 130\nPseudo Genes (internal stop) :: 39 of 130\nPseudo Genes (multiple problems) :: 50 of 130\nCRISPR Arrays :: 3\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Komagataeibacter medellinensis
COORDINATES: similar to AA sequence:RefSeq:WP_007284615.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007284612.1
COORDINATES: similar to AA sequence:RefSeq:WP_007284610.1
COORDINATES: similar to AA sequence:RefSeq:WP_007284609.1
lytic transglycosylase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007284448.1
COORDINATES: similar to AA sequence:RefSeq:WP_010665815.1
COORDINATES: similar to AA sequence:RefSeq:WP_018009783.1
VirB4 family type IV secretion/conjugal transfer ATPase
COORDINATES: similar to AA sequence:RefSeq:WP_007284446.1
COORDINATES: similar to AA sequence:RefSeq:WP_007284444.1
GO:0030255 - protein secretion by the type IV secretion system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010665818.1
COORDINATES: similar to AA sequence:RefSeq:WP_007284442.1
TrbG/VirB9 family P-type conjugative transfer protein
COORDINATES: similar to AA sequence:RefSeq:WP_010665819.1
COORDINATES: similar to AA sequence:RefSeq:WP_003537101.1
GO:0043684 - type IV secretion system complex [Evidence IEA]
GO:0044097 - secretion by the type IV secretion system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007284439.1
type IV secretory system conjugative DNA transfer family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007284438.1
COORDINATES: similar to AA sequence:RefSeq:WP_010665820.1
COORDINATES: similar to AA sequence:RefSeq:WP_007397884.1
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_007284435.1
GO:0008794 - arsenate reductase (glutaredoxin) activity [Evidence IEA]
This arsenate reductase requires both glutathione and glutaredoxin to convert arsenate to arsenite, after which the efflux transporter formed by ArsA and ArsB can extrude the arsenite from the cell, providing resistance; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006115732.1
COORDINATES: similar to AA sequence:RefSeq:WP_003618725.1
GO:0003674 - molecular_function [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003618723.1
ArsO family NAD(P)H-dependent flavin-containing monooxygenase
COORDINATES: similar to AA sequence:RefSeq:WP_003626656.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006560347.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016737361.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007635327.1
COORDINATES: similar to AA sequence:RefSeq:WP_011548634.1
Hsp31 stabilizes early unfolding protein intermediates under severe heat stress; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_076611590.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_076611353.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014095376.1
COORDINATES: similar to AA sequence:RefSeq:WP_012553061.1
COORDINATES: similar to AA sequence:RefSeq:WP_012226833.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018860470.1
COORDINATES: similar to AA sequence:RefSeq:WP_012812390.1
IS1380-like element IS1380A family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_012813131.1
phosphate-starvation-inducible PsiE family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012813132.1
COORDINATES: similar to AA sequence:RefSeq:WP_012813133.1
GO:0031004 - potassium ion-transporting ATPase complex [Evidence IEA]
GO:0008556 - P-type potassium transmembrane transporter activity [Evidence IEA]
GO:0006813 - potassium ion transport [Evidence IEA]
potassium-transporting ATPase subunit KdpA
COORDINATES: similar to AA sequence:RefSeq:WP_012813134.1
potassium-transporting ATPase subunit KdpB
COORDINATES: similar to AA sequence:RefSeq:WP_012813135.1
potassium-transporting ATPase subunit KdpC
COORDINATES: similar to AA sequence:RefSeq:WP_012813136.1
COORDINATES: similar to AA sequence:RefSeq:WP_012813137.1
COORDINATES: similar to AA sequence:RefSeq:WP_012813329.1
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_010512305.1
COORDINATES: similar to AA sequence:RefSeq:WP_010512303.1
COORDINATES: similar to AA sequence:RefSeq:WP_012973759.1
COORDINATES: similar to AA sequence:RefSeq:WP_007284567.1
COORDINATES: similar to AA sequence:RefSeq:WP_007284568.1
COORDINATES: similar to AA sequence:RefSeq:WP_007284570.1
COORDINATES: similar to AA sequence:RefSeq:WP_007284571.1
COORDINATES: similar to AA sequence:RefSeq:WP_007284572.1
COORDINATES: similar to AA sequence:RefSeq:WP_007284573.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_076612078.1
COORDINATES: nucleotide motif:Rfam:14.4:RF01497
AL1L pseudoknot; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_007284575.1
COORDINATES: similar to AA sequence:RefSeq:WP_007284576.1
COORDINATES: similar to AA sequence:RefSeq:WP_007284577.1
COORDINATES: similar to AA sequence:RefSeq:WP_007284695.1
COORDINATES: similar to AA sequence:RefSeq:WP_007284694.1
COORDINATES: similar to AA sequence:RefSeq:WP_007284693.1
COORDINATES: similar to AA sequence:RefSeq:WP_010665809.1
COORDINATES: similar to AA sequence:RefSeq:WP_007284690.1
COORDINATES: similar to AA sequence:RefSeq:WP_007284689.1
COORDINATES: similar to AA sequence:RefSeq:WP_007284688.1
COORDINATES: similar to AA sequence:RefSeq:WP_010667381.1
COORDINATES: similar to AA sequence:RefSeq:WP_007284719.1
COORDINATES: similar to AA sequence:RefSeq:WP_010667337.1
COORDINATES: similar to AA sequence:RefSeq:WP_007284654.1
COORDINATES: similar to AA sequence:RefSeq:WP_007284653.1
COORDINATES: similar to AA sequence:RefSeq:WP_007284652.1
type II toxin-antitoxin system Phd/YefM family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_010667336.1
COORDINATES: similar to AA sequence:RefSeq:WP_014095395.1
ParB N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007284620.1
COORDINATES: similar to AA sequence:RefSeq:WP_014095397.1
COORDINATES: similar to AA sequence:RefSeq:WP_010666723.1
COORDINATES: similar to AA sequence:RefSeq:WP_018307576.1