Lactobacillus johnsonii FI9785 plasmid p9785L, complete sequence.
Bacteria; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.
Complete genome sequence of Lactobacillus johnsonii FI9785, a competitive exclusion agent against pathogens in poultry
Submitted (16-APR-2009) Wegmann U., Institute of Food Research, Norwich, NR4 7UA, UNITED KINGDOM
REFSEQ INFORMATION: The reference sequence is identical to\nFN357112.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/05/2023 00:59:45\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 1,777\nCDSs (total) :: 1,709\nGenes (coding) :: 1,649\nCDSs (with protein) :: 1,649\nGenes (RNA) :: 68\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 53\nncRNAs :: 3\nPseudo Genes (total) :: 60\nCDSs (without protein) :: 60\nPseudo Genes (ambiguous residues) :: 0 of 60\nPseudo Genes (frameshifted) :: 34 of 60\nPseudo Genes (incomplete) :: 21 of 60\nPseudo Genes (internal stop) :: 28 of 60\nPseudo Genes (multiple problems) :: 17 of 60\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_020807713.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004896683.1
COORDINATES: similar to AA sequence:RefSeq:WP_000248477.1
COORDINATES: similar to AA sequence:RefSeq:WP_004896711.1
GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO:0006270 - DNA replication initiation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012846840.1
helix-turn-helix transcriptional regulator
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_014563640.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005719553.1
type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_003649860.1
nucleotidyl transferase AbiEii/AbiGii toxin family protein
COORDINATES: similar to AA sequence:RefSeq:WP_004896696.1
COORDINATES: similar to AA sequence:RefSeq:WP_004896695.1
COORDINATES: similar to AA sequence:RefSeq:WP_002045573.1
COORDINATES: similar to AA sequence:RefSeq:WP_000281041.1
COORDINATES: protein motif:HMM:NF025612.2
COORDINATES: similar to AA sequence:RefSeq:WP_013085803.1
GO:0004803 - transposase activity [Evidence IEA]
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004896688.1
COORDINATES: similar to AA sequence:RefSeq:WP_004896687.1
COORDINATES: similar to AA sequence:RefSeq:WP_004896686.1
COORDINATES: similar to AA sequence:RefSeq:WP_004896685.1
ABC-type multidrug transport system, ATPase and permease components
COORDINATES: similar to AA sequence:RefSeq:WP_003649298.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020807708.1
COORDINATES: similar to AA sequence:RefSeq:WP_020807709.1
COORDINATES: similar to AA sequence:RefSeq:WP_020807710.1
COORDINATES: similar to AA sequence:RefSeq:WP_020807711.1
COORDINATES: similar to AA sequence:RefSeq:WP_003625296.1
COORDINATES: similar to AA sequence:RefSeq:WP_003625293.1