Caldicellulosiruptor acetigenus I77R1B plasmid pCALKR01, complete sequence.
type: Entry
definition: Caldicellulosiruptor acetigenus I77R1B plasmid pCALKR01, complete sequence.
sequence version: NC_014719.1
sequence date: 2023-01-01
sequence: sequence
division: CON
label: NC_014719.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN00713564
keyword: GSC:MIGS:2.1
keyword: RefSeq
source: Caldicellulosiruptor acetigenus I77R1B
organism: Caldicellulosiruptor acetigenus I77R1B
taxonomy: Bacteria; Bacillota; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family III. Incertae Sedis; Caldicellulosiruptor.
reference: 1
references: 21216991
reference: 2
reference: 3
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP002327.1.\nURL -- http://www.jgi.doe.gov\nJGI Project ID: 4087033\nSource DNA and organism available from Robert M. Kelly\n(rmkelly@eos.ncsu.edu)\nContacts: Robert M. Kelly (rmkelly@eos.ncsu.edu)\n Tanja Woyke (microbe@cuba.jgi-psf.org)\nAnnotation done by JGI-ORNL and JGI-PGF\nFinishing done by JGI-LANL\nThe JGI and collaborators endorse the principles for the\ndistribution and use of large scale sequencing data adopted by the\nlarger genome sequencing community and urge users of this data to\nfollow them. it is our intention to publish the work of this\nproject in a timely fashion and we welcome collaborative\ninteraction on the project and analysis.\n(http://www.genome.gov/page.cfm?pageID=10506376).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##MIGS-Data-START##\ninvestigation_type :: bacteria_archaea\nproject_name :: Caldicellulosiruptor kristjanssonii 177R1B,\n DSM 12137\ncollection_date :: Missing\nlat_lon :: Missing\ndepth :: Missing\nalt_elev :: Missing\ncountry :: Iceland\nenvironment :: Hot spring\nnum_replicons :: 2\nref_biomaterial :: DSM 12137\nbiotic_relationship :: Free living\ntrophic_level :: Missing\nrel_to_oxygen :: Anaerobe\nisol_growth_condt :: Missing\nsequencing_meth :: WGS\nassembly :: Newbler v. 2.3 (pre-release)\nfinishing_strategy :: Finished\nGOLD Stamp ID :: Gi07643\nType Strain :: Yes\nIsolation Site :: Hot spring biomat; Iceland\nCell Shape :: Rod-shaped\nSporulation :: Nonsporulating\nTemperature Range :: Thermophile\nGram Staining :: Gram-\nDiseases :: None\n##MIGS-Data-END##\n\n##Genome-Assembly-Data-START##\nFinishing Goal :: Finished\nCurrent Finishing Status :: Finished\nAssembly Method :: Newbler v. 2.3\nGenome Coverage :: 30x\nSequencing Technology :: 454/Illumina\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##…

sequence
subclass of: SO_0000155
sequence length: 15970
topology: circular
so has quality: SO_0000988
location: 1..15970
location: region:1-15970:1
RO_0002162: 632335

NC_014719
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN00713564
type: BioSample
SIO_000068: biosample

1
title: Complete genome sequences for the anaerobic, extremely thermophilic plant biomass-degrading bacteria Caldicellulosiruptor hydrothermalis, Caldicellulosiruptor kristjanssonii, Caldicellulosiruptor kronotskyensis, Caldicellulosiruptor owensensis, and Caldicellulosiruptor lactoaceticus
author: Blumer-Schuette, S.E.
author: Ozdemir, I.
author: Mistry, D.
author: Lucas, S.
author: Lapidus, A.
author: Cheng, J.F.
author: Goodwin, L.A.
author: Pitluck, S.
author: Land, M.L.
author: Hauser, L.J.
author: Woyke, T.
author: Mikhailova, N.
author: Pati, A.
author: Kyrpides, N.C.
author: Ivanova, N.
author: Detter, J.C.
author: Walston-Davenport, K.
author: Han, S.
author: Adams, M.W.
author: Kelly, R.M.
journal: J Bacteriol
volume: 193
issue: 6
pages: 1483-1484
year: 2011
pubmed: 21216991

21216991
type: PubMed
SIO_000068: pubmed

2
title: Complete sequence of plasmid of Caldicellulosiruptor kristjanssonii I77R1B
author: Lucas, S.
author: Copeland, A.
author: Lapidus, A.
author: Cheng, J.-F.
author: Bruce, D.
author: Goodwin, L.
author: Pitluck, S.
author: Davenport, K.
author: Detter, J.C.
author: Han, C.
author: Tapia, R.
author: Land, M.
author: Hauser, L.
author: Jeffries, C.
author: Kyrpides, N.
author: Ivanova, N.
author: Mikhailova, N.
author: Blumer-Schuette, S.E.
author: Kelly, R.M.
author: Woyke, T.
journal: Unpublished

3
title: Direct Submission
author: Lucas, S.
author: Copeland, A.
author: Lapidus, A.
author: Cheng, J.-F.
author: Bruce, D.
author: Goodwin, L.
author: Pitluck, S.
author: Davenport, K.
author: Detter, J.C.
author: Han, C.
author: Tapia, R.
author: Land, M.
author: Hauser, L.
author: Jeffries, C.
author: Kyrpides, N.
author: Ivanova, N.
author: Mikhailova, N.
author: Blumer-Schuette, S.E.
author: Kelly, R.M.
author: Woyke, T.
journal: Submitted (10-NOV-2010) US DOE Joint Genome Institute, 2800 Mitchell Drive B310, Walnut Creek, CA 94598-1698, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15970:1
position: 15970
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-15970:1:source
so part of: sequence
organism: Caldicellulosiruptor acetigenus I77R1B
mol type: genomic DNA
strain: 177R1B
isolation source: hot spring biomat
plasmid: pCALKR01
country: Iceland

632335
type: Taxonomy
SIO_000068: taxonomy

CALKR_RS13135
type: Gene
subclass of: SO_0000704
RO_0002162: 632335
locus tag: CALKR_RS13135
old locus tag: Calkr_2636
so part of: sequence
location: 148..1176
location: region:148-1176:1
so has part: feature:148-1176:1:exon
subclass of: SO_0000010

position:148:1
position: 148
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1176:1
position: 1176
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:148-1176:1:exon

CALKR_RS13135
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 632335
locus tag: CALKR_RS13135
old locus tag: Calkr_2636
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNKKIKNTEERRELTLYLAGQYRMITYDAVVKIYGGSSSAYYWIKKLQDEGYLKRVGRSELQLTAKGREYVRNKYGLEVEPVKGKDKKKRWEKVKKIAFRDALMGKVIPAWCLKKENNMLDTKNQVVGVVEAPNAGRDGNRGKAIFMIRSETVQKVITEMIGDAEEISKLGYKEVLVICEGEKEIKAVEKAIKRIDAKDIGRLMVLPGDETSLELMEIILLIDDWRERVIRYVYQGHLYRMANLALADAEVIINSSSKIERVWVGIDCDVLRRQTMEMYPEVVQGEIDRVVCLRSQVQSRYANLKIKLDVIDDDKFFKLFKRDLAEKRRVEEWFKCLPNYES
SIO_010081: CALKR_RS13135
subclass of: SO_0000673
so part of: CALKR_RS13135
location: 148..1176
location: region:148-1176:1
so has part: feature:148-1176:1:exon

WP_013429066.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:148-1176:1:exon

CALKR_RS13140
type: Gene
subclass of: SO_0000704
RO_0002162: 632335
locus tag: CALKR_RS13140
old locus tag: Calkr_2637
so part of: sequence
location: 1152..1460
location: region:1152-1460:1
so has part: feature:1152-1460:1:exon
subclass of: SO_0000010

position:1152:1
position: 1152
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1460:1
position: 1460
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1152-1460:1:exon

CALKR_RS13140
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 632335
locus tag: CALKR_RS13140
old locus tag: Calkr_2637
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MPTKLRIITAVILVYVLTLYLFGMFGDIVQNISKMEPYQSFMQGKSIKIRLMIRQLKSYFFLLCINVVSMSFNRLKRLILFDFQQCTKKTLLSSIILINESG
SIO_010081: CALKR_RS13140
subclass of: SO_0000673
so part of: CALKR_RS13140
location: 1152..1460
location: region:1152-1460:1
so has part: feature:1152-1460:1:exon

WP_013429067.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1152-1460:1:exon

CALKR_RS13145
type: Gene
subclass of: SO_0000704
RO_0002162: 632335
locus tag: CALKR_RS13145
old locus tag: Calkr_2638
so part of: sequence
location: complement(1785..2336)
location: region:1785-2336:-1
so has part: feature:1785-2336:-1:exon
subclass of: SO_0000010

position:1785:-1
position: 1785
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2336:-1
position: 2336
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1785-2336:-1:exon

CALKR_RS13145
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 632335
locus tag: CALKR_RS13145
old locus tag: Calkr_2638
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000673905.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: site-specific integrase
translation: MEKVQPIRDVELIQQFKKLLKQKSLRDYMLFVVGINTGLRISDLLKLKAGDVKNKEFIVIREEKTNKPLRFPINEYLKQELENYISSMQLKDDDYLFQSRKGENRPISRIQAYRILNRTAKQLGLDEVGTHTLRKTFGYHHYKRFKDVAMLQEIFNHSSPSITLRYIGITDDEIASTIKDFYL
SIO_010081: CALKR_RS13145
subclass of: SO_0000673
so part of: CALKR_RS13145
location: complement(1785..2336)
location: region:1785-2336:-1
so has part: feature:1785-2336:-1:exon

WP_013429068.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1785-2336:-1:exon

CALKR_RS13150
type: Gene
subclass of: SO_0000704
RO_0002162: 632335
locus tag: CALKR_RS13150
old locus tag: Calkr_2639
so part of: sequence
location: 2680..2850
location: region:2680-2850:1
so has part: feature:2680-2850:1:exon
subclass of: SO_0000010

position:2680:1
position: 2680
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2850:1
position: 2850
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2680-2850:1:exon

CALKR_RS13150
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 632335
locus tag: CALKR_RS13150
old locus tag: Calkr_2639
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013429071.1
GO process: GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ribbon-helix-helix protein, CopG family
translation: MEKMKSVNLKLPLELFKEVEELAKRKGQTKSGLIRFVIAEYVEREKTKHSKIKDKA
SIO_010081: CALKR_RS13150
subclass of: SO_0000673
so part of: CALKR_RS13150
location: 2680..2850
location: region:2680-2850:1
so has part: feature:2680-2850:1:exon

WP_013429069.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2680-2850:1:exon

CALKR_RS13155
type: Gene
subclass of: SO_0000704
RO_0002162: 632335
locus tag: CALKR_RS13155
old locus tag: Calkr_2640
so part of: sequence
location: 2918..3571
location: region:2918-3571:1
so has part: feature:2918-3571:1:exon
subclass of: SO_0000010

position:2918:1
position: 2918
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3571:1
position: 3571
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2918-3571:1:exon

CALKR_RS13155
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 632335
locus tag: CALKR_RS13155
old locus tag: Calkr_2640
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MIIAGIVSWISTWLMEHVSYELGITFILLCIAGFIVLVTWANDSIKKEEKEKALRRNIILEGLEKRLGLRKIFTSLNYYILFGDEYFGLLPVMDVEEYIRNTKVEDIKSQDIEEKIIRITKINDIKVYIDSQEESWKNALKGGLVLGVVGAVAGANAVKKYIESAGIKLYTNEGFFNIGFLSGSKIEFNSPDYHTLMNKIDTFYNELLKIKNKEIFS
SIO_010081: CALKR_RS13155
subclass of: SO_0000673
so part of: CALKR_RS13155
location: 2918..3571
location: region:2918-3571:1
so has part: feature:2918-3571:1:exon

WP_148222743.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2918-3571:1:exon

CALKR_RS13160
type: Gene
subclass of: SO_0000704
RO_0002162: 632335
locus tag: CALKR_RS13160
old locus tag: Calkr_2641
so part of: sequence
location: 4123..4281
location: region:4123-4281:1
so has part: feature:4123-4281:1:exon
subclass of: SO_0000010

position:4123:1
position: 4123
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4281:1
position: 4281
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4123-4281:1:exon

CALKR_RS13160
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 632335
locus tag: CALKR_RS13160
old locus tag: Calkr_2641
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013429069.1
GO process: GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ribbon-helix-helix protein, CopG family
translation: MEKMKSVNLKLPEHLFKEVEKLAKRKGQSKSSLIRFVVAEYLEREKEKQKEI
SIO_010081: CALKR_RS13160
subclass of: SO_0000673
so part of: CALKR_RS13160
location: 4123..4281
location: region:4123-4281:1
so has part: feature:4123-4281:1:exon

WP_013429071.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4123-4281:1:exon

CALKR_RS13165
type: Gene
subclass of: SO_0000704
RO_0002162: 632335
locus tag: CALKR_RS13165
old locus tag: Calkr_2642
so part of: sequence
location: complement(4313..4984)
location: region:4313-4984:-1
so has part: feature:4313-4984:-1:exon
subclass of: SO_0000010

position:4313:-1
position: 4313
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4984:-1
position: 4984
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4313-4984:-1:exon

CALKR_RS13165
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 632335
locus tag: CALKR_RS13165
old locus tag: Calkr_2642
inference: COORDINATES: protein motif:HMM:NF012933.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: base excision DNA repair protein
translation: MNSIKDAFSTLLLKWWEENKRDFPWRHTNNPYHVLIAEMLLRKTTAQQVAQVYTEFIQKYPSSKVLMNANEDELVKILKPLGMELVRAKLLKKLALAIEKEWKGIIPSQQKDLLKLPGVGKYTANAVLSLIYLEDVPLVDTNFIRVIERVFNVKSSKSRAREDPSIWKFAYELIPKGNSRNFNLAVLDFAALICKAKKPQCSICPLITICIYYHKTKISKDLL
SIO_010081: CALKR_RS13165
subclass of: SO_0000673
so part of: CALKR_RS13165
location: complement(4313..4984)
location: region:4313-4984:-1
so has part: feature:4313-4984:-1:exon

WP_013429072.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4313-4984:-1:exon

CALKR_RS13170
type: Gene
subclass of: SO_0000704
RO_0002162: 632335
locus tag: CALKR_RS13170
old locus tag: Calkr_2643
so part of: sequence
location: 5103..6062
location: region:5103-6062:1
so has part: feature:5103-6062:1:exon
subclass of: SO_0000010

position:5103:1
position: 5103
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6062:1
position: 6062
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5103-6062:1:exon

CALKR_RS13170
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 632335
locus tag: CALKR_RS13170
old locus tag: Calkr_2643
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012560302.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DNA cytosine methyltransferase
translation: MIKIRVVSLFSGVGGICLAFKQAGFDVIWANDIDKYACITYRSNFPTVELVEGDIQSIDSNNIPECDIITAGFPCQPFSIAGYQRGLNDPRGRLFYEIVRIVHDKKPKIIFLENVKNLVSHNNGITFKNILNALENEGYYLKYAVLNSLEYGNVPQNRERVYIVGFLDKSMYEAFKFPEPVSLTVTIHDIIKPWEKKDEKYYYREGKYYELLKQNVDDPNTVYQIRRIYVRKNKKGVCPTLTANMGEGGHNVPIVMDNYGFRKLTPRECFILQGFPEDFVLPSGLADSKLYKQAGNAVTVTVVKRIADKILETCLVKSI
SIO_010081: CALKR_RS13170
subclass of: SO_0000673
so part of: CALKR_RS13170
location: 5103..6062
location: region:5103-6062:1
so has part: feature:5103-6062:1:exon

WP_013429073.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5103-6062:1:exon

CALKR_RS13175
type: Gene
subclass of: SO_0000704
RO_0002162: 632335
locus tag: CALKR_RS13175
old locus tag: Calkr_2644
so part of: sequence
location: complement(6084..7232)
location: region:6084-7232:-1
so has part: feature:6084-7232:-1:exon
subclass of: SO_0000010

position:6084:-1
position: 6084
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7232:-1
position: 7232
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6084-7232:-1:exon

CALKR_RS13175
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 632335
locus tag: CALKR_RS13175
old locus tag: Calkr_2644
EC number: 3.1.21.-
inference: COORDINATES: protein motif:HMM:NF021106.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: NgoFVII family restriction endonuclease
translation: MVVYDQQRFSEYISLLAKLGSLTKLFSNSGNSYLDSRLAENIYCYKFNARNVARDDNTVDAIYYSTGVAIKTFLASSNFQKIAEFNKNSPEIRERLNEDVISAVEYIAHLRNRRIESTAEIYGIPENNMIYHCVVREKENFIIIEEPLHKIVKEEIKNVKKRSENSIEFSDKYGEYIFNISKSVLMKKFFSKEAVKRAEVRFEIIENPIDLIENLVNISIEPRIISLKPYVILPLYSYDRRRNKYVPEHSGLNQWNAGGRPRDENEVYIRIPSVIKKNFPDFFPSRDTPFELILPNEKVISAKICQDNDKALMSNPNKVLGKWILRDILKIKEGELVTYEKLAEIGIDSVIVWKEGELKYRIDFREIGAYENFITKISEGRG
SIO_010081: CALKR_RS13175
subclass of: SO_0000673
so part of: CALKR_RS13175
location: complement(6084..7232)
location: region:6084-7232:-1
so has part: feature:6084-7232:-1:exon

WP_013429074.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6084-7232:-1:exon

CALKR_RS13180
type: Gene
subclass of: SO_0000704
RO_0002162: 632335
locus tag: CALKR_RS13180
old locus tag: Calkr_2645
so part of: sequence
location: complement(7318..7752)
location: region:7318-7752:-1
so has part: feature:7318-7752:-1:exon
subclass of: SO_0000010

position:7318:-1
position: 7318
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7752:-1
position: 7752
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7318-7752:-1:exon

CALKR_RS13180
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 632335
locus tag: CALKR_RS13180
old locus tag: Calkr_2645
inference: COORDINATES: protein motif:HMM:TIGR01764.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix domain-containing protein
translation: MDKLTIKEAAQALGVSEKTIRRMIKDGRLKASLEKSVYGQQYYIPKSEIDNAVQIVEAVKVKKEYSVEELAVAISNYLSERDKKLVEALEILNQKIEKIQKENQQLKEELLKLQEEHFRKIDEKLTQWRQENKKKGLFSFLRRQ
SIO_010081: CALKR_RS13180
subclass of: SO_0000673
so part of: CALKR_RS13180
location: complement(7318..7752)
location: region:7318-7752:-1
so has part: feature:7318-7752:-1:exon

WP_013429075.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7318-7752:-1:exon

CALKR_RS13335
type: Gene
subclass of: SO_0000704
RO_0002162: 632335
locus tag: CALKR_RS13335
old locus tag: Calkr_2646
so part of: sequence
location: 7932..9071
location: region:7932-9071:1
so has part: feature:7932-9071:1:exon
subclass of: SO_0000010

position:7932:1
position: 7932
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9071:1
position: 9071
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7932-9071:1:exon

CALKR_RS13335
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 632335
locus tag: CALKR_RS13335
old locus tag: Calkr_2646
inference: COORDINATES: protein motif:HMM:NF025107.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix domain-containing protein
translation: MNSKTIIRVSKRDCPYVIVDKTALNDNRLSWKAKGLLCYLLSLPDDWKINLRELTTHSSDGRDSTQSALNELIKFGYCVKERVRDEKGRFAGYMYTVYERPIGSNNAPEDKSKDGQPTFEQKESSNPEAKNLQINNSKVRNEANYETHHKDQNPCTEKPYTENPSLLNNDGTNYSVCVNNTTKEKQDLENKGYSELDNELISKLAKHEIAVDVIDRILHTTEGQKKNVLKVIESPYFQLKVLNKTAFLISCIQNNWSFDDLNNERVAIKNSCTSEKKTEKRQLREERDVSAYLEMEKLYKKVLWGEDAKEALKMQQKTGKSTAATGTTGMRKSQKPLHEERDPSIYLEMEKLYKEYLRNSSNDDVDEEEVFRFLGLNPA
SIO_010081: CALKR_RS13335
subclass of: SO_0000673
so part of: CALKR_RS13335
location: 7932..9071
location: region:7932-9071:1
so has part: feature:7932-9071:1:exon

WP_148222745.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7932-9071:1:exon

CALKR_RS13190
type: Gene
subclass of: SO_0000704
RO_0002162: 632335
locus tag: CALKR_RS13190
old locus tag: Calkr_2647
so part of: sequence
location: 9239..10306
location: region:9239-10306:1
so has part: feature:9239-10306:1:exon
subclass of: SO_0000010

position:9239:1
position: 9239
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10306:1
position: 10306
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9239-10306:1:exon

CALKR_RS13190
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 632335
locus tag: CALKR_RS13190
old locus tag: Calkr_2647
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013433270.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MBL fold metallo-hydrolase
translation: MFTLLRIKKHIVFVLVAIVFVFSLLSFSFAATQKALTVSFIDVGQGDSIIVQTPQGKNILIDSGPNTAESTVLSYLKSKGITKLDMVVVSHPHEDHIGNMDVIIQNFAVGKVYAPNVTTNTKAFESFLLAVKGKGLKFSIPEVGQDISPDSKVKMIVLSPSKKDKYEDLNDYSIVLKVEYGKTSFLLMGDATASIEEKLLHDNKLKQYLKSNVLKIGHHGSKYSSTSTFLSTVKPKYAVISVGKDNPYGHPFPLTLSKLKSLGAEILRTDEQGTITITSDGQTIKVNKKASAIKPQAPPSSSTSKYAYIGNSNTKKFHYPWCTWAKKIAPYHRVYFKTRQEAISAGYVPCKVCKP
SIO_010081: CALKR_RS13190
subclass of: SO_0000673
so part of: CALKR_RS13190
location: 9239..10306
location: region:9239-10306:1
so has part: feature:9239-10306:1:exon

WP_041737173.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9239-10306:1:exon

CALKR_RS13625
type: Gene
subclass of: SO_0000704
RO_0002162: 632335
gene: hfq
locus tag: CALKR_RS13625
old locus tag: Calkr_2648
so part of: sequence
location: 10368..10895
location: region:10368-10895:1
so has part: feature:10368-10895:1:exon
subclass of: SO_0000010

position:10368:1
position: 10368
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10895:1
position: 10895
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10368-10895:1:exon

CALKR_RS13625
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 632335
gene: hfq
locus tag: CALKR_RS13625
old locus tag: Calkr_2648
inference: COORDINATES: protein motif:HMM:NF028518.2
GO function: GO:0003723 - RNA binding [Evidence IEA]
GO process: GO:0006378 - mRNA polyadenylation [Evidence IEA]; GO:0016070 - RNA metabolic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: RNA chaperone Hfq
translation: MKDPAFQDVFLNNLRKGKVHVTVYLFNGAQLKGVIKAFDTYTIVLQTSDKKQLLIYKHGITTIVPSQTVEIIKDFEEQVPQGEAPEGEAENKAIGPTSATIRKVKLEDIKISQALLNTPPRREKVEKFKQQYLQTGRFEKYIKVKENTMMLVDGYAKYVAAKELNLKEVEVEIVK
SIO_010081: CALKR_RS13625
subclass of: SO_0000673
so part of: CALKR_RS13625
location: 10368..10895
location: region:10368-10895:1
so has part: feature:10368-10895:1:exon

WP_013429078.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10368-10895:1:exon

CALKR_RS13200
type: Gene
subclass of: SO_0000704
RO_0002162: 632335
locus tag: CALKR_RS13200
old locus tag: Calkr_2649
so part of: sequence
location: complement(11000..11794)
location: region:11000-11794:-1
so has part: feature:11000-11794:-1:exon
subclass of: SO_0000010

position:11000:-1
position: 11000
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11794:-1
position: 11794
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11000-11794:-1:exon

CALKR_RS13200
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 632335
locus tag: CALKR_RS13200
old locus tag: Calkr_2649
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNQTTTWGVKITEELKQRLTKLIEESGLTAKEFIEELVQVYEAQKTKELVPAISSDIEELQTLTKRILDIYINVGQKIMNLQKARDEEHSKLIAQKDSLIATLQTKLAELQAENEKLKSEAQTHAKQAAEFEAEINQLKEANKTNTALIEEYKAKIDTLTALINEYKSFKEQNEILKAENETLKAELADKEKTIKDLEERIEFIKKEASIEKETAILELNKKHQEELKKLQEEYTAKINLLQEHVNKLLAEKEEYLKKWLKNNN
SIO_010081: CALKR_RS13200
subclass of: SO_0000673
so part of: CALKR_RS13200
location: complement(11000..11794)
location: region:11000-11794:-1
so has part: feature:11000-11794:-1:exon

WP_013429079.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11000-11794:-1:exon

CALKR_RS13215
type: Gene
subclass of: SO_0000704
RO_0002162: 632335
locus tag: CALKR_RS13215
old locus tag: Calkr_2650
so part of: sequence
location: 13471..13740
location: region:13471-13740:1
so has part: feature:13471-13740:1:exon
subclass of: SO_0000010

position:13471:1
position: 13471
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13740:1
position: 13740
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13471-13740:1:exon

CALKR_RS13215
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 632335
locus tag: CALKR_RS13215
old locus tag: Calkr_2650
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MMVSVKKFLTFVSIASLILTGVLFSKSPGTQASPNVGYITANEFVTQLLTQAKVTPATWDKAVAMKLIPFEDLNQSMFTCLSTDVPKHE
SIO_010081: CALKR_RS13215
subclass of: SO_0000673
so part of: CALKR_RS13215
location: 13471..13740
location: region:13471-13740:1
so has part: feature:13471-13740:1:exon

WP_041737168.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13471-13740:1:exon

CALKR_RS13220
type: Gene
subclass of: SO_0000704
RO_0002162: 632335
locus tag: CALKR_RS13220
old locus tag: Calkr_2651
so part of: sequence
location: 14247..14585
location: region:14247-14585:1
so has part: feature:14247-14585:1:exon
subclass of: SO_0000010

position:14247:1
position: 14247
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14585:1
position: 14585
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14247-14585:1:exon

CALKR_RS13220
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 632335
locus tag: CALKR_RS13220
old locus tag: Calkr_2651
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MGRRKENKIRSRTISVRLPESHWIFKIEGNKSSIIESALELYKTFVLDANRKANSITNFEYRQIDQVQAAEEEENIENLQSVQSVPSDKSETAIPFKNKDPKSLLKLTKSLR
SIO_010081: CALKR_RS13220
subclass of: SO_0000673
so part of: CALKR_RS13220
location: 14247..14585
location: region:14247-14585:1
so has part: feature:14247-14585:1:exon

WP_013429081.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14247-14585:1:exon

CALKR_RS13225
type: Gene
subclass of: SO_0000704
RO_0002162: 632335
locus tag: CALKR_RS13225
old locus tag: Calkr_2652
so part of: sequence
location: 14618..15331
location: region:14618-15331:1
so has part: feature:14618-15331:1:exon
subclass of: SO_0000010

position:14618:1
position: 14618
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15331:1
position: 15331
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14618-15331:1:exon

CALKR_RS13225
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 632335
locus tag: CALKR_RS13225
old locus tag: Calkr_2652
EC number: 3.1.22.4
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: RusA family crossover junction endodeoxyribonuclease
translation: MGMEQIVGFLEMLNKVEQKLYECSSTVQEMIGEVEDFKNKLDEENKLLQQLEPIEKYLKETEYNICRLKGKVTIEKDKLNRLVSACSARKPVDDTSRNPETPTDCIEFAKPHMVLRFEIDEIPPRWRNSNSTPFLKRVRTIVEDAIEKIPNLPQYDKVHILIEIYFPGKGYRVDLDNLMIKTIIDAIKQEQIVKDDNIEMVSLTVIGYKNSQAKTVVTIIPVERMVDIVARLLPVSK
SIO_010081: CALKR_RS13225
subclass of: SO_0000673
so part of: CALKR_RS13225
location: 14618..15331
location: region:14618-15331:1
so has part: feature:14618-15331:1:exon

WP_013429082.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14618-15331:1:exon