Yersinia enterocolitica strain NW56 plasmid unnamed2.
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Yersiniaceae; Yersinia.
GDARD project (Project number: P10000158)
Submitted (26-SEP-2022) Bioinformatics, University of Pretoria, 202 Lunnon road, Pretoria, Gauteng 0083, South Africa
REFSEQ INFORMATION: The reference sequence is identical to\nCP107104.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 2022\nAssembly Method :: SPAdes v. Version 3.15.3\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 173x\nSequencing Technology :: Illumina HiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 10/21/2022 10:20:33\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 4,113\nCDSs (total) :: 4,043\nGenes (coding) :: 3,996\nCDSs (with protein) :: 3,996\nGenes (RNA) :: 70\nrRNAs :: 1 (5S)\ncomplete rRNAs :: 1 (5S)\ntRNAs :: 59\nncRNAs :: 10\nPseudo Genes (total) :: 47\nCDSs (without protein) :: 47\nPseudo Genes (ambiguous residues) :: 0 of 47\nPseudo Genes (frameshifted) :: 17 of 47\nPseudo Genes (incomplete) :: 29 of 47\nPseudo Genes (internal stop) :: 11 of 47\nPseudo Genes (multiple problems) :: 8 of 47\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##
COORDINATES: similar to AA sequence:RefSeq:WP_000957083.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
MobC family plasmid mobilization relaxosome protein
COORDINATES: similar to AA sequence:RefSeq:WP_005761324.1
COORDINATES: similar to AA sequence:RefSeq:WP_001070439.1
EmrE family multidrug efflux SMR transporter
COORDINATES: similar to AA sequence:RefSeq:WP_000137421.1
MbeD family mobilization/exclusion protein
COORDINATES: protein motif:HMM:NF016710.2
COORDINATES: protein motif:HMM:NF015397.2
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
relaxase/mobilization nuclease domain-containing protein