Vitreoscilla filiformis strain ATCC 15551 plasmid pVF2, complete sequence.
Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales; Neisseriaceae; Vitreoscilla.
Complete Genome Sequence of the cosmetic ferment Vitreoscilla filiformis (ATCC15551)
Submitted (13-JUL-2017) Biotechnologies, L'Oreal, 1 Avenue Eugene schueller, Aulnay-Sous-Bois 93600, France
REFSEQ INFORMATION: The reference sequence is identical to\nCP022425.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: MAR-2017\nAssembly Method :: other v. SMRT analysis v2.3.0\nExpected Final Version :: yes\nGenome Coverage :: 157.0x\nSequencing Technology :: Illumina HiSeq; PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/30/2022 04:41:07\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,575\nCDSs (total) :: 3,509\nGenes (coding) :: 3,476\nCDSs (with protein) :: 3,476\nGenes (RNA) :: 66\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 57\nncRNAs :: 3\nPseudo Genes (total) :: 33\nCDSs (without protein) :: 33\nPseudo Genes (ambiguous residues) :: 0 of 33\nPseudo Genes (frameshifted) :: 6 of 33\nPseudo Genes (incomplete) :: 28 of 33\nPseudo Genes (internal stop) :: 0 of 33\nPseudo Genes (multiple problems) :: 1 of 33\nCRISPR Arrays :: 9\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_012077412.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_018746209.1
COORDINATES: similar to AA sequence:RefSeq:WP_018746210.1
COORDINATES: similar to AA sequence:RefSeq:WP_018746211.1
COORDINATES: similar to AA sequence:RefSeq:WP_020227835.1
COORDINATES: similar to AA sequence:RefSeq:WP_018746213.1
COORDINATES: similar to AA sequence:RefSeq:WP_018746214.1
COORDINATES: similar to AA sequence:RefSeq:WP_018413503.1
COORDINATES: similar to AA sequence:RefSeq:WP_013124621.1
COORDINATES: similar to AA sequence:RefSeq:WP_013124620.1
COORDINATES: similar to AA sequence:RefSeq:WP_011052942.1
COORDINATES: similar to AA sequence:RefSeq:WP_018413498.1
ParC family partition-associated protein
COORDINATES: similar to AA sequence:RefSeq:WP_005918229.1
COORDINATES: similar to AA sequence:RefSeq:WP_005918230.1
COORDINATES: similar to AA sequence:RefSeq:WP_013124615.1
COORDINATES: similar to AA sequence:RefSeq:WP_018413495.1
COORDINATES: similar to AA sequence:RefSeq:WP_013124613.1
GO:0016787 - hydrolase activity [Evidence IEA]
GO:0008152 - metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013124612.1
COORDINATES: similar to AA sequence:RefSeq:WP_017452571.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
type II toxin-antitoxin system RelB/DinJ family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_013124610.1
type II toxin-antitoxin system YafQ family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_007194396.1
COORDINATES: protein motif:HMM:NF037472.2
COORDINATES: similar to AA sequence:RefSeq:WP_019726371.1
COORDINATES: similar to AA sequence:RefSeq:WP_004356309.1
COORDINATES: similar to AA sequence:RefSeq:WP_004356308.1
COORDINATES: similar to AA sequence:RefSeq:WP_004356305.1
COORDINATES: similar to AA sequence:RefSeq:WP_004356304.1
GO:0003824 - catalytic activity [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]
GO:0006304 - DNA modification [Evidence IEA]
Eco57I restriction-modification methylase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017115701.1
COORDINATES: similar to AA sequence:RefSeq:WP_017244794.1
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_011805097.1
GO:0005215 - transporter activity [Evidence IEA]
efflux RND transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_011734096.1
COORDINATES: similar to AA sequence:RefSeq:WP_019677824.1
COORDINATES: similar to AA sequence:RefSeq:WP_004355998.1
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]; GO:0005506 - iron ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015403057.1
GO:0009279 - cell outer membrane [Evidence IEA]
GO:0015288 - porin activity [Evidence IEA]
efflux transporter outer membrane subunit
COORDINATES: similar to AA sequence:RefSeq:WP_011911466.1
COORDINATES: similar to AA sequence:RefSeq:WP_011517528.1
COORDINATES: similar to AA sequence:RefSeq:WP_003155746.1
COORDINATES: similar to AA sequence:RefSeq:WP_013124600.1
DDE-type integrase/transposase/recombinase
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018310652.1
TraI/MobA(P) family conjugative relaxase
COORDINATES: similar to AA sequence:RefSeq:WP_018310651.1
COORDINATES: similar to AA sequence:RefSeq:WP_018310650.1
COORDINATES: similar to AA sequence:RefSeq:WP_018310649.1
COORDINATES: similar to AA sequence:RefSeq:WP_018746205.1