Zymomonas mobilis subsp. mobilis str. CP4 = NRRL B-14023 plasmid unnamed2, complete sequence.
Zymomonas mobilis subsp. mobilis str. CP4 = NRRL B-14023
Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales; Zymomonadaceae; Zymomonas.
Finished Genome of Zymomonas mobilis subsp. mobilis Strain CP4, an Applied Ethanol Producer
Submitted (18-NOV-2013) DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP006892.1.\nURL -- http://www.jgi.doe.gov\nJGI Project ID: 202747\nSource DNA and Organism available from Katherine Pappas\n(kmpappas@biol.uoa.gr)\nSource DNA available from Katherine Pappas (kmpappas@biol.uoa.gr)\nOrganism available from Katherine Pappas (kmpappas@biol.uoa.gr)\nContacts: Katherine Pappas (kmpappas@biol.uoa.gr)\n Tanja Woyke (microbe@cuba.jgi-psf.org)\nWhole genome sequencing and draft assembly at JGI-PGF\nAnnotation by JGI-ORNL\nThe JGI and collaborators endorse the principles for the\ndistribution and use of large scale sequencing data adopted by the\nlarger genome sequencing community and urge users of this data to\nfollow them. It is our intention to publish the work of this\nproject in a timely fashion and we welcome collaborative\ninteraction on the project and analysis.\n(http://www.genome.gov/page.cfm?pageID=10506376).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##MIGS-Data-START##\ninvestigation_type :: bacteria_archaea\nproject_name :: Zymomonas mobilis mobilis CP4\nbiotic_relationship :: Free living\nrel_to_oxygen :: Facultative\nassembly :: ALLPATHS v. R37654\nsequencing_meth :: WGS\nGOLD Stamp ID :: Gi02097\nCurrent Finishing Status :: Level 2: High-Quality Draft\nGreengenes ID :: 112656\nFunding Program :: DOE-CSP 2008\nIsolation Site :: Fermenting sugarcane juice\nCell Shape :: Rod-shaped\nMotility :: Motile\nTemperature Range :: Mesophile\nGram Staining :: Gram-\nDiseases :: None\nalt_elev :: missing\ncollection_date :: missing\ncountry :: missing\ndepth :: missing\nenvironment :: missing\nisol_growth_condt :: missing\nlat_lon :: missing\nnum_replicons :: missing\nref_biomaterial :: missing\ntrophic_level :: missing\nfinishing_strategy :: missing\n##MIGS-Data-END##\n\n##Genome-Assembly-Data-START##\nFinishing Goal :: Improved High-Quality Draft\nCurrent Finishing Status :: Improved High-Quality Draft\nAssembly Method :: ALLPATHS v. R37654\nGenome Coverage :: Unknown\nSequencing Technology :: 454; Illumina GAii\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/25/2023 11:27:58\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 1,909\nCDSs (total) :: 1,852\nGenes (coding) :: 1,843\nCDSs (with protein) :: 1,843\nGenes (RNA) :: 57\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 48\nncRNAs :: 3\nPseudo Genes (total) :: 9\nCDSs (without protein) :: 9\nPseudo Genes (ambiguous residues) :: 0 of 9\nPseudo Genes (frameshifted) :: 2 of 9\nPseudo Genes (incomplete) :: 6 of 9\nPseudo Genes (internal stop) :: 3 of 9\nPseudo Genes (multiple problems) :: 1 of 9\nCRISPR Arrays :: 3\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: protein motif:HMM:NF012927.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014229063.1
GO:0047689 - aspartate racemase activity [Evidence IEA]
GO:0006520 - amino acid metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013934365.1
GO:0003824 - catalytic activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009113565.1
iron-containing alcohol dehydrogenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006118340.1
COORDINATES: similar to AA sequence:RefSeq:WP_008814762.1
COORDINATES: similar to AA sequence:RefSeq:WP_006880282.1
COORDINATES: similar to AA sequence:RefSeq:WP_004708080.1
L-fucose/L-arabinose isomerase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010405152.1
COORDINATES: similar to AA sequence:RefSeq:WP_013934369.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013934366.1
COORDINATES: similar to AA sequence:RefSeq:WP_013934381.1
NAD-dependent succinate-semialdehyde dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_017154723.1
COORDINATES: similar to AA sequence:RefSeq:WP_014466468.1
COORDINATES: similar to AA sequence:RefSeq:WP_012817667.1
COORDINATES: similar to AA sequence:RefSeq:WP_014466466.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012817684.1
COORDINATES: similar to AA sequence:RefSeq:WP_014466422.1
COORDINATES: similar to AA sequence:RefSeq:WP_014466425.1
COORDINATES: similar to AA sequence:RefSeq:WP_014849500.1
COORDINATES: similar to AA sequence:RefSeq:WP_012817687.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011094465.1
COORDINATES: similar to AA sequence:RefSeq:WP_006051623.1
NAD(P)-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014077149.1
glutathione S-transferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006758326.1
GO:0009279 - cell outer membrane [Evidence IEA]
GO:0015288 - porin activity [Evidence IEA]
efflux transporter outer membrane subunit
COORDINATES: similar to AA sequence:RefSeq:WP_018442182.1
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_012224153.1
GO:0005215 - transporter activity [Evidence IEA]
efflux RND transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_012553497.1