Zymomonas mobilis subsp. mobilis str. CP4 = NRRL B-14023 plasmid unnamed, complete sequence.
Zymomonas mobilis subsp. mobilis str. CP4 = NRRL B-14023
Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales; Zymomonadaceae; Zymomonas.
Finished Genome of Zymomonas mobilis subsp. mobilis Strain CP4, an Applied Ethanol Producer
Submitted (18-NOV-2013) DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP006891.1.\nURL -- http://www.jgi.doe.gov\nJGI Project ID: 202747\nSource DNA and Organism available from Katherine Pappas\n(kmpappas@biol.uoa.gr)\nSource DNA available from Katherine Pappas (kmpappas@biol.uoa.gr)\nOrganism available from Katherine Pappas (kmpappas@biol.uoa.gr)\nContacts: Katherine Pappas (kmpappas@biol.uoa.gr)\n Tanja Woyke (microbe@cuba.jgi-psf.org)\nWhole genome sequencing and draft assembly at JGI-PGF\nAnnotation by JGI-ORNL\nThe JGI and collaborators endorse the principles for the\ndistribution and use of large scale sequencing data adopted by the\nlarger genome sequencing community and urge users of this data to\nfollow them. It is our intention to publish the work of this\nproject in a timely fashion and we welcome collaborative\ninteraction on the project and analysis.\n(http://www.genome.gov/page.cfm?pageID=10506376).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##MIGS-Data-START##\ninvestigation_type :: bacteria_archaea\nproject_name :: Zymomonas mobilis mobilis CP4\nbiotic_relationship :: Free living\nrel_to_oxygen :: Facultative\nassembly :: ALLPATHS v. R37654\nsequencing_meth :: WGS\nGOLD Stamp ID :: Gi02097\nCurrent Finishing Status :: Level 2: High-Quality Draft\nGreengenes ID :: 112656\nFunding Program :: DOE-CSP 2008\nIsolation Site :: Fermenting sugarcane juice\nCell Shape :: Rod-shaped\nMotility :: Motile\nTemperature Range :: Mesophile\nGram Staining :: Gram-\nDiseases :: None\nalt_elev :: missing\ncollection_date :: missing\ncountry :: missing\ndepth :: missing\nenvironment :: missing\nisol_growth_condt :: missing\nlat_lon :: missing\nnum_replicons :: missing\nref_biomaterial :: missing\ntrophic_level :: missing\nfinishing_strategy :: missing\n##MIGS-Data-END##\n\n##Genome-Assembly-Data-START##\nFinishing Goal :: Improved High-Quality Draft\nCurrent Finishing Status :: Improved High-Quality Draft\nAssembly Method :: ALLPATHS v. R37654\nGenome Coverage :: Unknown\nSequencing Technology :: 454; Illumina GAii\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/25/2023 11:27:58\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 1,909\nCDSs (total) :: 1,852\nGenes (coding) :: 1,843\nCDSs (with protein) :: 1,843\nGenes (RNA) :: 57\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 48\nncRNAs :: 3\nPseudo Genes (total) :: 9\nCDSs (without protein) :: 9\nPseudo Genes (ambiguous residues) :: 0 of 9\nPseudo Genes (frameshifted) :: 2 of 9\nPseudo Genes (incomplete) :: 6 of 9\nPseudo Genes (internal stop) :: 3 of 9\nPseudo Genes (multiple problems) :: 1 of 9\nCRISPR Arrays :: 3\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: protein motif:HMM:NF017716.2
GO:0019069 - viral capsid assembly [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004842392.1
COORDINATES: similar to AA sequence:RefSeq:WP_006390732.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_013635159.1
COORDINATES: similar to AA sequence:RefSeq:WP_019091447.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014466407.1
COORDINATES: similar to AA sequence:RefSeq:WP_013945659.1
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF021580.2
COORDINATES: similar to AA sequence:RefSeq:WP_010545232.1
COORDINATES: similar to AA sequence:RefSeq:WP_014466402.1
ogr/Delta-like zinc finger family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014466421.1
COORDINATES: similar to AA sequence:RefSeq:WP_002708456.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: protein motif:HMM:NF025120.2
COORDINATES: protein motif:HMM:NF023376.2
COORDINATES: similar to AA sequence:RefSeq:WP_000974763.1
COORDINATES: protein motif:HMM:NF017885.2
COORDINATES: similar to AA sequence:RefSeq:WP_015073694.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_019950266.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
type II toxin-antitoxin system RelB/DinJ family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_002763655.1
type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family
COORDINATES: protein motif:HMM:NF017739.2
contractile injection system protein, VgrG/Pvc8 family
COORDINATES: protein motif:HMM:NF018674.2
COORDINATES: protein motif:HMM:TIGR01760.1
GO:0005198 - structural molecule activity [Evidence IEA]
GO:0016032 - viral process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003294366.1
COORDINATES: protein motif:HMM:NF021614.2
COORDINATES: protein motif:HMM:TIGR01611.1
GO:0044423 - virion component [Evidence IEA]
COORDINATES: protein motif:HMM:NF016845.2
phage tail sheath subtilisin-like domain-containing protein
COORDINATES: protein motif:HMM:NF016829.2
COORDINATES: protein motif:HMM:TIGR01644.1
GO:0019068 - virion assembly [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01634.1
COORDINATES: similar to AA sequence:RefSeq:WP_003043276.1
COORDINATES: protein motif:HMM:NF016927.2
COORDINATES: protein motif:HMM:NF018586.2
COORDINATES: similar to AA sequence:RefSeq:WP_018250781.1
COORDINATES: similar to AA sequence:RefSeq:WP_012050638.1
GO:0008745 - N-acetylmuramoyl-L-alanine amidase activity [Evidence IEA]
GO:0009253 - peptidoglycan catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018250777.1
COORDINATES: protein motif:HMM:NF017713.2
COORDINATES: protein motif:HMM:NF017731.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0004519 - endonuclease activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018250773.1
GO:0019028 - viral capsid [Evidence IEA]