Pseudoalteromonas donghaensis strain HJ51 plasmid unnamed2, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Alteromonadales; Pseudoalteromonadaceae; Pseudoalteromonas.
Draft genome sequence of Pseudoalteromonas donghaensis HJ51
Submitted (30-AUG-2018) College of Natural Science, Chungbuk National University, 1, Chungdae-Ro, Seowon-Gu, Cheongju 28644, South Korea
REFSEQ INFORMATION: The reference sequence is identical to\nCP032092.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. 3\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 210.0x\nSequencing Technology :: PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/23/2023 04:36:58\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,173\nCDSs (total) :: 4,042\nGenes (coding) :: 4,030\nCDSs (with protein) :: 4,030\nGenes (RNA) :: 131\nrRNAs :: 9, 8, 8 (5S, 16S, 23S)\ncomplete rRNAs :: 9, 8, 8 (5S, 16S, 23S)\ntRNAs :: 102\nncRNAs :: 4\nPseudo Genes (total) :: 12\nCDSs (without protein) :: 12\nPseudo Genes (ambiguous residues) :: 0 of 12\nPseudo Genes (frameshifted) :: 7 of 12\nPseudo Genes (incomplete) :: 8 of 12\nPseudo Genes (internal stop) :: 2 of 12\nPseudo Genes (multiple problems) :: 4 of 12\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Pseudoalteromonas donghaensis
COORDINATES: similar to AA sequence:RefSeq:WP_009832513.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF020304.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
TnsA endonuclease C-terminal domain-containing protein
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_015599566.1
COORDINATES: similar to AA sequence:RefSeq:WP_000808307.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF013579.2
GO:0006304 - DNA modification [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004396026.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005319675.1
COORDINATES: protein motif:HMM:NF017300.2
GO:0006274 - DNA replication termination [Evidence IEA]
DNA replication terminus site-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_016708873.1
GO:0005575 - cellular_component [Evidence IEA]
GO:0003674 - molecular_function [Evidence IEA]
GO:0030244 - cellulose biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016708871.1
COORDINATES: similar to AA sequence:RefSeq:WP_006791406.1
COORDINATES: similar to AA sequence:RefSeq:WP_016708869.1
GO:0090540 - bacterial cellulose biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016708868.1
GO:0016760 - cellulose synthase (UDP-forming) activity [Evidence IEA]; GO:0035438 - cyclic-di-GMP binding [Evidence IEA]
GO:0030244 - cellulose biosynthetic process [Evidence IEA]; GO:0006011 - UDP-glucose metabolic process [Evidence IEA]
UDP-forming cellulose synthase catalytic subunit
COORDINATES: similar to AA sequence:RefSeq:WP_008167633.1
cellulose biosynthesis cyclic di-GMP-binding regulatory protein BcsB
COORDINATES: similar to AA sequence:RefSeq:WP_008127560.1
GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
cellulose synthase complex periplasmic endoglucanase BcsZ
COORDINATES: similar to AA sequence:RefSeq:WP_010555126.1
GO:0019867 - outer membrane [Evidence IEA]
cellulose synthase subunit BcsC-related outer membrane protein
COORDINATES: similar to AA sequence:RefSeq:WP_016708863.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017049049.1
COORDINATES: similar to AA sequence:RefSeq:WP_012551505.1
GO:0005886 - plasma membrane [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010363283.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: protein motif:HMM:NF033547.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012604282.1
GO:0009009 - site-specific recombinase activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0009294 - DNA-mediated transformation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013834159.1
COORDINATES: protein motif:HMM:NF017892.2
COORDINATES: protein motif:HMM:NF025105.2
COORDINATES: similar to AA sequence:RefSeq:WP_011070736.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF039622.1
COORDINATES: protein motif:HMM:NF041494.1
COORDINATES: protein motif:HMM:NF021897.2
type IV secretion system DNA-binding domain-containing protein
COORDINATES: protein motif:HMM:NF025706.2
COORDINATES: protein motif:HMM:NF018836.2
type IV conjugative transfer system protein TraL
COORDINATES: protein motif:HMM:NF017152.2
TraE/TraK family type IV conjugative transfer system protein
COORDINATES: protein motif:HMM:NF018311.2
type-F conjugative transfer system secretin TraK
COORDINATES: protein motif:HMM:NF015688.2
COORDINATES: protein motif:HMM:NF013658.2
GO:0003824 - catalytic activity [Evidence IEA]
phosphoadenosine phosphosulfate reductase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_017085251.1
COORDINATES: similar to AA sequence:RefSeq:WP_008294170.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_016658919.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611418.1
COORDINATES: similar to AA sequence:RefSeq:WP_007828369.1
COORDINATES: similar to AA sequence:RefSeq:WP_013715177.1
COORDINATES: similar to AA sequence:RefSeq:WP_008248285.1
GO:0015562 - efflux transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008248289.1
acetyl-CoA hydrolase/transferase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008248290.1
GO:0016787 - hydrolase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003074618.1
COORDINATES: protein motif:HMM:TIGR01845.1
GO:0009279 - cell outer membrane [Evidence IEA]
GO:0015288 - porin activity [Evidence IEA]
efflux transporter outer membrane subunit
COORDINATES: similar to AA sequence:RefSeq:WP_008248295.1
GO:0055085 - transmembrane transport [Evidence IEA]; GO:0042908 - xenobiotic transport [Evidence IEA]
multidrug efflux RND transporter permease subunit
COORDINATES: protein motif:HMM:TIGR01730.1
GO:0005215 - transporter activity [Evidence IEA]
efflux RND transporter periplasmic adaptor subunit
COORDINATES: protein motif:HMM:NF019960.2
COORDINATES: similar to AA sequence:RefSeq:WP_017500827.1
COORDINATES: similar to AA sequence:RefSeq:WP_008248304.1
COORDINATES: similar to AA sequence:RefSeq:WP_009898684.1
carboxyl transferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_016985455.1
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF022019.2
GO:0004518 - nuclease activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF025085.2
COORDINATES: protein motif:HMM:NF024965.2
COORDINATES: similar to AA sequence:RefSeq:WP_011586425.1
COORDINATES: protein motif:HMM:NF013015.2
COORDINATES: similar to AA sequence:RefSeq:WP_010554746.1
COORDINATES: similar to AA sequence:RefSeq:WP_010554745.1
COORDINATES: similar to AA sequence:RefSeq:WP_010560829.1
COORDINATES: protein motif:HMM:NF013117.2
COORDINATES: similar to AA sequence:RefSeq:WP_012197347.1
COORDINATES: protein motif:HMM:NF025438.2
COORDINATES: protein motif:HMM:NF040570.1
COORDINATES: protein motif:HMM:NF023742.2
COORDINATES: protein motif:HMM:NF021896.2
disulfide isomerase DsbC N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF021212.2
COORDINATES: protein motif:HMM:NF040179.1
COORDINATES: protein motif:HMM:NF012745.2
COORDINATES: protein motif:HMM:NF001591.0
COORDINATES: protein motif:HMM:NF012936.2
GO:0004066 - asparagine synthase (glutamine-hydrolyzing) activity [Evidence IEA]
GO:0006529 - asparagine biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF012995.2
GO:0016407 - acetyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016767464.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017048393.1
GO:0009317 - acetyl-CoA carboxylase complex [Evidence IEA]
GO:0003989 - acetyl-CoA carboxylase activity [Evidence IEA]
GO:0006633 - fatty acid biosynthetic process [Evidence IEA]
acetyl-CoA carboxylase, carboxyltransferase subunit beta
COORDINATES: protein motif:HMM:NF023101.2
COORDINATES: protein motif:HMM:NF012772.2
COORDINATES: protein motif:HMM:TIGR03736.1
COORDINATES: protein motif:HMM:NF025815.2
COORDINATES: protein motif:HMM:TIGR03734.1
COORDINATES: protein motif:HMM:NF014787.2
COORDINATES: protein motif:HMM:NF020125.2
COORDINATES: protein motif:HMM:NF016724.2
COORDINATES: protein motif:HMM:NF012798.2
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011220502.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_018984929.1
helix-turn-helix transcriptional regulator
COORDINATES: protein motif:HMM:TIGR02227.1
GO:0004252 - serine-type endopeptidase activity [Evidence IEA]
GO:0009306 - protein secretion [Evidence IEA]; GO:0006465 - signal peptide processing [Evidence IEA]
COORDINATES: protein motif:HMM:NF021209.2
TrbC family F-type conjugative pilus assembly protein
COORDINATES: protein motif:HMM:NF018536.2
COORDINATES: similar to AA sequence:RefSeq:WP_005499774.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF018666.2
COORDINATES: similar to AA sequence:RefSeq:WP_010308590.1
COORDINATES: similar to AA sequence:RefSeq:WP_009671209.1
COORDINATES: similar to AA sequence:RefSeq:WP_004396929.1
COORDINATES: similar to AA sequence:RefSeq:WP_014843114.1
COORDINATES: similar to AA sequence:RefSeq:WP_008464453.1
COORDINATES: protein motif:HMM:NF025041.2
HipA N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014610915.1
RNA-guided endonuclease TnpB family protein
COORDINATES: protein motif:HMM:NF033573.1
COORDINATES: similar to AA sequence:RefSeq:WP_004744161.1
type II toxin-antitoxin system HipA family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_004744160.1
COORDINATES: protein motif:HMM:NF019530.2
conjugal transfer protein TraG N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF024642.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0004386 - helicase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012651.2
GO:0003697 - single-stranded DNA binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF019348.2
COORDINATES: protein motif:HMM:NF022792.2
COORDINATES: protein motif:HMM:NF017973.2
COORDINATES: similar to AA sequence:RefSeq:WP_014852959.1
COORDINATES: protein motif:HMM:NF024755.2
COORDINATES: similar to AA sequence:RefSeq:WP_016045681.1
GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA]
class I ribonucleotide reductase maintenance protein YfaE
COORDINATES: similar to AA sequence:RefSeq:WP_015913358.1
COORDINATES: similar to AA sequence:RefSeq:WP_010179406.1
GO:0045892 - negative regulation of DNA-templated transcription [Evidence IEA]
BlaI/MecI/CopY family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_010179408.1
COORDINATES: similar to AA sequence:RefSeq:WP_010179410.1
COORDINATES: similar to AA sequence:RefSeq:WP_014609898.1
COORDINATES: similar to AA sequence:RefSeq:WP_011787746.1
GO:0051139 - metal cation:proton antiporter activity [Evidence IEA]
CusA/CzcA family heavy metal efflux RND transporter
COORDINATES: similar to AA sequence:RefSeq:WP_010179416.1
COORDINATES: similar to AA sequence:RefSeq:WP_010179418.1
COORDINATES: similar to AA sequence:RefSeq:WP_010179420.1
COORDINATES: protein motif:HMM:TIGR00616.1
GO:0006259 - DNA metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF024096.2
PD-(D/E)XK nuclease-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017629618.1
COORDINATES: similar to AA sequence:RefSeq:WP_010557852.1
GO:0005576 - extracellular region [Evidence IEA]
GO:0004222 - metalloendopeptidase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010557851.1
COORDINATES: similar to AA sequence:RefSeq:WP_010557850.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010557849.1
GO:0004555 - alpha,alpha-trehalase activity [Evidence IEA]
GO:0005991 - trehalose metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010557848.1
GO:0009436 - glyoxylate catabolic process [Evidence IEA]; GO:0071704 - organic substance metabolic process [Evidence IEA]
dihydrodipicolinate synthase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007375569.1
GO:0008233 - peptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016707042.1
GO:0071949 - FAD binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017217281.1
COORDINATES: similar to AA sequence:RefSeq:WP_006793007.1
COORDINATES: similar to AA sequence:RefSeq:WP_008897597.1
COORDINATES: similar to AA sequence:RefSeq:WP_010557841.1
COORDINATES: similar to AA sequence:RefSeq:WP_010557840.1
COORDINATES: similar to AA sequence:RefSeq:WP_010557839.1
COORDINATES: similar to AA sequence:RefSeq:WP_009837888.1