Natronorubrum bangense strain JCM 10635 plasmid unnamed4, complete sequence.
Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Natrialbales; Natrialbaceae; Natronorubrum.
A new type of DNA phosphorothioation-based antiviral system in archaea
Submitted (25-JUL-2018) Pharmacy College, Wuhan University, East Lake Road, Wuhan 430071, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP031309.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Celera Assembler v. 2.1.139483\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 228.66x\nSequencing Technology :: PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/08/2023 18:58:02\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,347\nCDSs (total) :: 4,264\nGenes (coding) :: 4,178\nCDSs (with protein) :: 4,178\nGenes (RNA) :: 83\nrRNAs :: 7, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 7, 5, 5 (5S, 16S, 23S)\ntRNAs :: 63\nncRNAs :: 3\nPseudo Genes (total) :: 86\nCDSs (without protein) :: 86\nPseudo Genes (ambiguous residues) :: 0 of 86\nPseudo Genes (frameshifted) :: 40 of 86\nPseudo Genes (incomplete) :: 53 of 86\nPseudo Genes (internal stop) :: 17 of 86\nPseudo Genes (multiple problems) :: 19 of 86\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_008457953.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
pyridoxamine 5'-phosphate oxidase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008165044.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF012652.2
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
type II/IV secretion system ATPase subunit
COORDINATES: protein motif:HMM:NF012694.2
type II secretion system F family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006065856.1
COORDINATES: similar to AA sequence:RefSeq:WP_006065824.1
COORDINATES: protein motif:HMM:NF013752.2
COORDINATES: similar to AA sequence:RefSeq:WP_005580988.1
nitrous oxide reductase accessory protein NosL
COORDINATES: protein motif:HMM:NF012334.2
COORDINATES: protein motif:HMM:NF016163.2
COORDINATES: similar to AA sequence:RefSeq:WP_008415621.1
orc1/cdc6 family replication initiation protein
COORDINATES: similar to AA sequence:RefSeq:WP_013875743.1
phage integrase SAM-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006065848.1
COORDINATES: similar to AA sequence:RefSeq:WP_005535406.1
zinc-dependent alcohol dehydrogenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007142733.1
COORDINATES: similar to AA sequence:RefSeq:WP_008165175.1
COORDINATES: similar to AA sequence:RefSeq:WP_015302182.1
COORDINATES: similar to AA sequence:RefSeq:WP_008165158.1
COORDINATES: protein motif:HMM:NF033545.0
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: nucleotide motif:Rfam:14.4:RF01959
Derived by automated computational analysis using gene prediction method: cmsearch.
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
COORDINATES: nucleotide motif:Rfam:14.4:RF02540
COORDINATES: nucleotide motif:Rfam:14.4:RF00001
COORDINATES: similar to AA sequence:RefSeq:WP_015233380.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008165203.1
rhodanese-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007983037.1
COORDINATES: similar to AA sequence:RefSeq:WP_008165206.1
COORDINATES: similar to AA sequence:RefSeq:WP_006066851.1
GO:0051920 - peroxiredoxin activity [Evidence IEA]; GO:0008379 - thioredoxin peroxidase activity [Evidence IEA]
GO:0098869 - cellular oxidant detoxification [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008165210.1
COORDINATES: similar to AA sequence:RefSeq:WP_008165213.1
COORDINATES: similar to AA sequence:RefSeq:WP_006066848.1
COORDINATES: similar to AA sequence:RefSeq:WP_004216893.1
COORDINATES: similar to AA sequence:RefSeq:WP_004216892.1
sulfite exporter TauE/SafE family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006066844.1
GO:0006812 - monoatomic cation transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005580956.1
COORDINATES: similar to AA sequence:RefSeq:WP_008165134.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008165132.1
GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity [Evidence IEA]
GO:0006400 - tRNA modification [Evidence IEA]
tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO
COORDINATES: similar to AA sequence:RefSeq:WP_004216884.1
COORDINATES: similar to AA sequence:RefSeq:WP_004216883.1
cytochrome d ubiquinol oxidase subunit II
COORDINATES: similar to AA sequence:RefSeq:WP_008165053.1
COORDINATES: similar to AA sequence:RefSeq:WP_006180386.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008578258.1
GO:0004735 - pyrroline-5-carboxylate reductase activity [Evidence IEA]
GO:0006561 - proline biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006068067.1
GO:0004349 - glutamate 5-kinase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006651010.1
GO:0004350 - glutamate-5-semialdehyde dehydrogenase activity [Evidence IEA]; GO:0016620 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006884066.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006068069.1
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_007257516.1
COORDINATES: similar to AA sequence:RefSeq:WP_004267644.1
Lrp/AsnC family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_006671680.1
COORDINATES: similar to AA sequence:RefSeq:WP_004516850.1
COORDINATES: similar to AA sequence:RefSeq:WP_015321222.1
COORDINATES: similar to AA sequence:RefSeq:WP_006431758.1
COORDINATES: similar to AA sequence:RefSeq:WP_005579629.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008165067.1
COORDINATES: similar to AA sequence:RefSeq:WP_006091288.1
COORDINATES: similar to AA sequence:RefSeq:WP_006091289.1
COORDINATES: similar to AA sequence:RefSeq:WP_006091291.1
COORDINATES: similar to AA sequence:RefSeq:WP_006091293.1
COORDINATES: similar to AA sequence:RefSeq:WP_006432011.1
spermidine/putrescine ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_008165079.1
COORDINATES: similar to AA sequence:RefSeq:WP_006091297.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006432014.1
COORDINATES: similar to AA sequence:RefSeq:WP_008165086.1
COORDINATES: similar to AA sequence:RefSeq:WP_008165088.1
COORDINATES: similar to AA sequence:RefSeq:WP_008165089.1
COORDINATES: similar to AA sequence:RefSeq:WP_008165092.1
acetyl-CoA hydrolase/transferase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008165093.1
GO:0036361 - racemase activity, acting on amino acids and derivatives [Evidence IEA]
GO:0006807 - nitrogen compound metabolic process [Evidence IEA]
aspartate/glutamate racemase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008165095.1
COORDINATES: similar to AA sequence:RefSeq:WP_008165096.1
hydantoinase/oxoprolinase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006068093.1
hydantoinase B/oxoprolinase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006068094.1
COORDINATES: similar to AA sequence:RefSeq:WP_008165101.1
COORDINATES: similar to AA sequence:RefSeq:WP_006068096.1
COORDINATES: similar to AA sequence:RefSeq:WP_008165106.1
COORDINATES: similar to AA sequence:RefSeq:WP_006091317.1
COORDINATES: similar to AA sequence:RefSeq:WP_006091318.1
aspartate aminotransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006091319.1
CoA-acylating methylmalonate-semialdehyde dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_008165109.1
LLM class flavin-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_006091321.1
COORDINATES: similar to AA sequence:RefSeq:WP_008165113.1
COORDINATES: similar to AA sequence:RefSeq:WP_008165115.1
COORDINATES: similar to AA sequence:RefSeq:WP_006091324.1
COORDINATES: similar to AA sequence:RefSeq:WP_006091325.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006107562.1
COORDINATES: similar to AA sequence:RefSeq:WP_008423936.1
COORDINATES: similar to AA sequence:RefSeq:WP_008014609.1
COORDINATES: similar to AA sequence:RefSeq:WP_005558234.1
COORDINATES: similar to AA sequence:RefSeq:WP_006092847.1