Natronorubrum bangense strain JCM 10635 plasmid unnamed3, complete sequence.
Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Natrialbales; Natrialbaceae; Natronorubrum.
A new type of DNA phosphorothioation-based antiviral system in archaea
Submitted (25-JUL-2018) Pharmacy College, Wuhan University, East Lake Road, Wuhan 430071, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP031308.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Celera Assembler v. 2.1.139483\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 228.66x\nSequencing Technology :: PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/08/2023 18:58:02\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,347\nCDSs (total) :: 4,264\nGenes (coding) :: 4,178\nCDSs (with protein) :: 4,178\nGenes (RNA) :: 83\nrRNAs :: 7, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 7, 5, 5 (5S, 16S, 23S)\ntRNAs :: 63\nncRNAs :: 3\nPseudo Genes (total) :: 86\nCDSs (without protein) :: 86\nPseudo Genes (ambiguous residues) :: 0 of 86\nPseudo Genes (frameshifted) :: 40 of 86\nPseudo Genes (incomplete) :: 53 of 86\nPseudo Genes (internal stop) :: 17 of 86\nPseudo Genes (multiple problems) :: 19 of 86\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
COORDINATES: similar to AA sequence:RefSeq:WP_008327182.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008008867.1
catalyzes the formation of 5-phospho-alpha-D-ribose 1-diphosphate and nicotinate from nicotinate D-ribonucleotide and diphosphate; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004060562.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060441.1
COORDINATES: similar to AA sequence:RefSeq:WP_014555220.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008015366.1
COORDINATES: similar to AA sequence:RefSeq:WP_011572751.1
RNA-guided endonuclease TnpB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_004216259.1
COORDINATES: similar to AA sequence:RefSeq:WP_006066890.1
COORDINATES: similar to AA sequence:RefSeq:WP_006066882.1
COORDINATES: similar to AA sequence:RefSeq:WP_007143656.1
COORDINATES: similar to AA sequence:RefSeq:WP_007737464.1
COORDINATES: protein motif:HMM:NF013775.2
COORDINATES: similar to AA sequence:RefSeq:WP_006666781.1
COORDINATES: similar to AA sequence:RefSeq:WP_006648274.1
ArdC-like ssDNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007110772.1
COORDINATES: similar to AA sequence:RefSeq:WP_004043159.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008015142.1
COORDINATES: similar to AA sequence:RefSeq:WP_008015212.1
COORDINATES: similar to AA sequence:RefSeq:WP_006093041.1
COORDINATES: similar to AA sequence:RefSeq:WP_006093042.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006093043.1
COORDINATES: similar to AA sequence:RefSeq:WP_006093045.1
COORDINATES: protein motif:HMM:NF024783.2
HNH endonuclease signature motif containing protein
COORDINATES: protein motif:HMM:NF025119.2
COORDINATES: similar to AA sequence:RefSeq:WP_015911428.1
transcription initiation factor IIB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_009488186.1
winged helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004048599.1
COORDINATES: similar to AA sequence:RefSeq:WP_004971387.1
SWIM zinc finger domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004060460.1
COORDINATES: similar to AA sequence:RefSeq:WP_004043407.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006184799.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594499.1
COORDINATES: similar to AA sequence:RefSeq:WP_006183361.1
COORDINATES: similar to AA sequence:RefSeq:WP_005576065.1
COORDINATES: similar to AA sequence:RefSeq:WP_004048585.1
COORDINATES: similar to AA sequence:RefSeq:WP_011222457.1
MarR family winged helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_015911446.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004519 - endonuclease activity [Evidence IEA]
GO:0009307 - DNA restriction-modification system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008444956.1
COORDINATES: similar to AA sequence:RefSeq:WP_008524600.1
COORDINATES: similar to AA sequence:RefSeq:WP_015911449.1
COORDINATES: similar to AA sequence:RefSeq:WP_013035109.1
COORDINATES: similar to AA sequence:RefSeq:WP_015911450.1
COORDINATES: similar to AA sequence:RefSeq:WP_008422551.1
COORDINATES: similar to AA sequence:RefSeq:WP_008322088.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008322089.1
ribonuclease H-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008322090.1
COORDINATES: similar to AA sequence:RefSeq:WP_006183341.1
internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004043375.1
COORDINATES: similar to AA sequence:RefSeq:WP_011324439.1
COORDINATES: similar to AA sequence:RefSeq:WP_008446344.1
COORDINATES: similar to AA sequence:RefSeq:WP_006065882.1
COORDINATES: similar to AA sequence:RefSeq:WP_015299360.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006092962.1
COORDINATES: similar to AA sequence:RefSeq:WP_006092964.1
COORDINATES: protein motif:HMM:NF025388.2
COORDINATES: similar to AA sequence:RefSeq:WP_013035684.1
COORDINATES: similar to AA sequence:RefSeq:WP_006165219.1
COORDINATES: similar to AA sequence:RefSeq:WP_007143119.1
COORDINATES: similar to AA sequence:RefSeq:WP_006065891.1
COORDINATES: similar to AA sequence:RefSeq:WP_007143121.1
COORDINATES: similar to AA sequence:RefSeq:WP_007698175.1
COORDINATES: similar to AA sequence:RefSeq:WP_007698173.1
COORDINATES: similar to AA sequence:RefSeq:WP_014555899.1
COORDINATES: similar to AA sequence:RefSeq:WP_006065896.1
COORDINATES: similar to AA sequence:RefSeq:WP_006431778.1
COORDINATES: similar to AA sequence:RefSeq:WP_006184166.1
COORDINATES: similar to AA sequence:RefSeq:WP_006065899.1
COORDINATES: similar to AA sequence:RefSeq:WP_006090787.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0140658 - ATP-dependent chromatin remodeler activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012996351.1
COORDINATES: similar to AA sequence:RefSeq:WP_007143070.1
COORDINATES: similar to AA sequence:RefSeq:WP_006065903.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007143072.1
COORDINATES: similar to AA sequence:RefSeq:WP_007143073.1
COORDINATES: similar to AA sequence:RefSeq:WP_007143074.1
COORDINATES: similar to AA sequence:RefSeq:WP_004516383.1
COORDINATES: similar to AA sequence:RefSeq:WP_006065908.1
COORDINATES: similar to AA sequence:RefSeq:WP_015310305.1
COORDINATES: similar to AA sequence:RefSeq:WP_009486639.1
COORDINATES: similar to AA sequence:RefSeq:WP_007143081.1
COORDINATES: similar to AA sequence:RefSeq:WP_007143082.1
COORDINATES: similar to AA sequence:RefSeq:WP_004977662.1
COORDINATES: similar to AA sequence:RefSeq:WP_007258727.1
COORDINATES: similar to AA sequence:RefSeq:WP_007258728.1
COORDINATES: similar to AA sequence:RefSeq:WP_006065918.1
COORDINATES: similar to AA sequence:RefSeq:WP_006065919.1
COORDINATES: similar to AA sequence:RefSeq:WP_006093030.1
VirB4 family type IV secretion system protein
COORDINATES: similar to AA sequence:RefSeq:WP_007276470.1
COORDINATES: similar to AA sequence:RefSeq:WP_014865841.1
COORDINATES: similar to AA sequence:RefSeq:WP_008388057.1
COORDINATES: similar to AA sequence:RefSeq:WP_006180364.1
ribosome biogenesis/translation initiation ATPase RLI
COORDINATES: protein motif:HMM:NF012791.2
COORDINATES: similar to AA sequence:RefSeq:WP_012996939.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007977437.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006091342.1
COORDINATES: similar to AA sequence:RefSeq:WP_006092917.1
GO:0004635 - phosphoribosyl-AMP cyclohydrolase activity [Evidence IEA]
GO:0000105 - histidine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015321994.1
orotate phosphoribosyltransferase-like protein
COORDINATES: similar to AA sequence:RefSeq:WP_006092941.1
COORDINATES: similar to AA sequence:RefSeq:WP_006630558.1
mandelate racemase/muconate lactonizing enzyme family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006065936.1
GO:0008270 - zinc ion binding [Evidence IEA]
GO:0006401 - RNA catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006065937.1