Natronorubrum bangense strain JCM 10635 plasmid unnamed2, complete sequence.
Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Natrialbales; Natrialbaceae; Natronorubrum.
A new type of DNA phosphorothioation-based antiviral system in archaea
Submitted (25-JUL-2018) Pharmacy College, Wuhan University, East Lake Road, Wuhan 430071, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP031307.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Celera Assembler v. 2.1.139483\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 228.66x\nSequencing Technology :: PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/08/2023 18:58:02\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,347\nCDSs (total) :: 4,264\nGenes (coding) :: 4,178\nCDSs (with protein) :: 4,178\nGenes (RNA) :: 83\nrRNAs :: 7, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 7, 5, 5 (5S, 16S, 23S)\ntRNAs :: 63\nncRNAs :: 3\nPseudo Genes (total) :: 86\nCDSs (without protein) :: 86\nPseudo Genes (ambiguous residues) :: 0 of 86\nPseudo Genes (frameshifted) :: 40 of 86\nPseudo Genes (incomplete) :: 53 of 86\nPseudo Genes (internal stop) :: 17 of 86\nPseudo Genes (multiple problems) :: 19 of 86\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_008895644.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012946054.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006091055.1
COORDINATES: similar to AA sequence:RefSeq:WP_014863792.1
COORDINATES: similar to AA sequence:RefSeq:WP_012946058.1
COORDINATES: similar to AA sequence:RefSeq:WP_006091051.1
GO:0004356 - glutamate-ammonia ligase activity [Evidence IEA]
GO:0006542 - glutamine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008159074.1
COORDINATES: similar to AA sequence:RefSeq:WP_008159073.1
COORDINATES: similar to AA sequence:RefSeq:WP_008159071.1
COORDINATES: similar to AA sequence:RefSeq:WP_006091047.1
COORDINATES: similar to AA sequence:RefSeq:WP_006091046.1
COORDINATES: similar to AA sequence:RefSeq:WP_006431234.1
COORDINATES: similar to AA sequence:RefSeq:WP_006067362.1
COORDINATES: similar to AA sequence:RefSeq:WP_006179444.1
COORDINATES: similar to AA sequence:RefSeq:WP_006067360.1
COORDINATES: similar to AA sequence:RefSeq:WP_006091041.1
2,5-diamino-6-(ribosylamino)-4(3H)-pyrimidinone 5'-phosphate reductase
COORDINATES: similar to AA sequence:RefSeq:WP_015323469.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895623.1
GO:0003824 - catalytic activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015322392.1
GO:0033744 - L-methionine:thioredoxin-disulfide S-oxidoreductase activity [Evidence IEA]; GO:0008113 - peptide-methionine (S)-S-oxide reductase activity [Evidence IEA]
GO:0030091 - protein repair [Evidence IEA]; GO:0006979 - response to oxidative stress [Evidence IEA]
peptide-methionine (S)-S-oxide reductase MsrA
COORDINATES: similar to AA sequence:RefSeq:WP_006184395.1
COORDINATES: similar to AA sequence:RefSeq:WP_006109631.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008159060.1
COORDINATES: similar to AA sequence:RefSeq:WP_006091012.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006091009.1
cob(I)yrinic acid a,c-diamide adenosyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_006067350.1
COORDINATES: similar to AA sequence:RefSeq:WP_006067349.1
COORDINATES: similar to AA sequence:RefSeq:WP_007261539.1
COORDINATES: similar to AA sequence:RefSeq:WP_008159055.1
type II toxin-antitoxin system PemK/MazF family toxin
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_006067346.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_006167467.1
ribbon-helix-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004267856.1
AbrB/MazE/SpoVT family DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006431313.1
COORDINATES: similar to AA sequence:RefSeq:WP_006091113.1
COORDINATES: similar to AA sequence:RefSeq:WP_008159049.1
GO:0004765 - shikimate kinase activity [Evidence IEA]
GO:0009423 - chorismate biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013880490.1
COORDINATES: similar to AA sequence:RefSeq:WP_008159046.1
COORDINATES: similar to AA sequence:RefSeq:WP_007109101.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008159041.1
MaoC/PaaZ C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008159038.1
COORDINATES: similar to AA sequence:RefSeq:WP_007108084.1
cobalamin B12-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008159029.1
COORDINATES: similar to AA sequence:RefSeq:WP_005578658.1
COORDINATES: similar to AA sequence:RefSeq:WP_006067330.1
COORDINATES: similar to AA sequence:RefSeq:WP_008159023.1
COORDINATES: similar to AA sequence:RefSeq:WP_006089625.1
COORDINATES: similar to AA sequence:RefSeq:WP_006089626.1
COORDINATES: similar to AA sequence:RefSeq:WP_006078421.1
GO:0018784 - (S)-2-haloacid dehalogenase activity [Evidence IEA]
GO:0006805 - xenobiotic metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006089628.1
GO:0019120 - hydrolase activity, acting on acid halide bonds, in C-halide compounds [Evidence IEA]
halocarboxylic acid dehydrogenase DehI family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008159015.1
COORDINATES: similar to AA sequence:RefSeq:WP_008159012.1
COORDINATES: similar to AA sequence:RefSeq:WP_008012644.1
COORDINATES: similar to AA sequence:RefSeq:WP_006600551.1
beta-ketoacyl synthase N-terminal-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008159009.1
GO:0070403 - NAD+ binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
GO:0006631 - fatty acid metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007107456.1
GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008159007.1
acyl CoA:acetate/3-ketoacid CoA transferase
COORDINATES: similar to AA sequence:RefSeq:WP_008454092.1
enoyl-CoA hydratase/isomerase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008159004.1
LLM class flavin-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_008454090.1
COORDINATES: similar to AA sequence:RefSeq:WP_006067313.1
COORDINATES: similar to AA sequence:RefSeq:WP_008158999.1
COORDINATES: similar to AA sequence:RefSeq:WP_006090870.1
COORDINATES: similar to AA sequence:RefSeq:WP_008158979.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945988.1
COORDINATES: similar to AA sequence:RefSeq:WP_006827915.1
COORDINATES: similar to AA sequence:RefSeq:WP_007261666.1
DegT/DnrJ/EryC1/StrS family aminotransferase
COORDINATES: similar to AA sequence:RefSeq:WP_004214703.1
COORDINATES: similar to AA sequence:RefSeq:WP_015322573.1
COORDINATES: similar to AA sequence:RefSeq:WP_008158967.1
COORDINATES: similar to AA sequence:RefSeq:WP_007142911.1
COORDINATES: similar to AA sequence:RefSeq:WP_014863628.1
GO:0004360 - glutamine-fructose-6-phosphate transaminase (isomerizing) activity [Evidence IEA]
GO:0006040 - amino sugar metabolic process [Evidence IEA]; GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]
glutamine--fructose-6-phosphate transaminase (isomerizing)
COORDINATES: similar to AA sequence:RefSeq:WP_004214693.1
COORDINATES: similar to AA sequence:RefSeq:WP_008158958.1
COORDINATES: similar to AA sequence:RefSeq:WP_008158957.1
COORDINATES: similar to AA sequence:RefSeq:WP_008158955.1
bacterio-opsin activator domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006090886.1
COORDINATES: similar to AA sequence:RefSeq:WP_006090889.1
COORDINATES: similar to AA sequence:RefSeq:WP_006067295.1
COORDINATES: similar to AA sequence:RefSeq:WP_006653536.1
RNA-guided endonuclease TnpB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008895565.1
NAD-dependent epimerase/dehydratase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006090895.1
COORDINATES: similar to AA sequence:RefSeq:WP_008011948.1
COORDINATES: similar to AA sequence:RefSeq:WP_005559094.1
GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
polysaccharide deacetylase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006431438.1
COORDINATES: similar to AA sequence:RefSeq:WP_006179596.1
GO:0008761 - UDP-N-acetylglucosamine 2-epimerase activity [Evidence IEA]
GO:0009103 - lipopolysaccharide biosynthetic process [Evidence IEA]
UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)
COORDINATES: similar to AA sequence:RefSeq:WP_008158934.1
COORDINATES: similar to AA sequence:RefSeq:WP_008158932.1
COORDINATES: similar to AA sequence:RefSeq:WP_008158931.1
COORDINATES: similar to AA sequence:RefSeq:WP_006109313.1
COORDINATES: similar to AA sequence:RefSeq:WP_005580886.1
COORDINATES: similar to AA sequence:RefSeq:WP_008158926.1
COORDINATES: similar to AA sequence:RefSeq:WP_006654816.1
COORDINATES: similar to AA sequence:RefSeq:WP_006673517.1
COORDINATES: protein motif:HMM:NF016464.2
COORDINATES: similar to AA sequence:RefSeq:WP_007142971.1
COORDINATES: protein motif:HMM:NF013080.2
GO:0008484 - sulfuric ester hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015301696.1
COORDINATES: similar to AA sequence:RefSeq:WP_006672764.1
COORDINATES: similar to AA sequence:RefSeq:WP_007142968.1
COORDINATES: similar to AA sequence:RefSeq:WP_007142967.1
COORDINATES: similar to AA sequence:RefSeq:WP_006663843.1
COORDINATES: similar to AA sequence:RefSeq:WP_004267817.1
COORDINATES: similar to AA sequence:RefSeq:WP_015299935.1
GO:0016742 - hydroxymethyl-, formyl- and related transferase activity [Evidence IEA]
GO:0009058 - biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015299936.1
COORDINATES: similar to AA sequence:RefSeq:WP_008158910.1
COORDINATES: similar to AA sequence:RefSeq:WP_006067264.1
COORDINATES: similar to AA sequence:RefSeq:WP_008453299.1
COORDINATES: similar to AA sequence:RefSeq:WP_006090907.1
COORDINATES: similar to AA sequence:RefSeq:WP_006654419.1
COORDINATES: similar to AA sequence:RefSeq:WP_008158905.1
COORDINATES: similar to AA sequence:RefSeq:WP_007261491.1
COORDINATES: similar to AA sequence:RefSeq:WP_006090932.1
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007261524.1
COORDINATES: similar to AA sequence:RefSeq:WP_008158847.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895605.1
winged helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008895604.1
GO:0004805 - trehalose-phosphatase activity [Evidence IEA]
GO:0005992 - trehalose biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006184409.1
COORDINATES: similar to AA sequence:RefSeq:WP_006184412.1
orc1/cdc6 family replication initiation protein
COORDINATES: similar to AA sequence:RefSeq:WP_006090968.1
twin-arginine translocation signal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006090964.1
COORDINATES: similar to AA sequence:RefSeq:WP_004214683.1
COORDINATES: similar to AA sequence:RefSeq:WP_013880593.1
GO:0017004 - cytochrome complex assembly [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008895595.1
COORDINATES: similar to AA sequence:RefSeq:WP_008158866.1
PGF-CTERM sorting domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006067243.1
Lrp/AsnC family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_004216084.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
acetyl-CoA carboxylase biotin carboxylase subunit
COORDINATES: similar to AA sequence:RefSeq:WP_006089761.1
COORDINATES: similar to AA sequence:RefSeq:WP_005577477.1
GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity [Evidence IEA]
GO:0006400 - tRNA modification [Evidence IEA]
tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO
COORDINATES: similar to AA sequence:RefSeq:WP_006067239.1
GO:0009317 - acetyl-CoA carboxylase complex [Evidence IEA]
GO:0003989 - acetyl-CoA carboxylase activity [Evidence IEA]
GO:0006633 - fatty acid biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006431213.1
biotin-dependent carboxyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008158891.1
carboxyltransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014864157.1
COORDINATES: similar to AA sequence:RefSeq:WP_013880481.1
COORDINATES: similar to AA sequence:RefSeq:WP_008011440.1
protein sorting system archaetidylserine decarboxylase
COORDINATES: similar to AA sequence:RefSeq:WP_007261525.1
COORDINATES: similar to AA sequence:RefSeq:WP_008158842.1
COORDINATES: similar to AA sequence:RefSeq:WP_008158839.1
GO:0009236 - cobalamin biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007261529.1
COORDINATES: similar to AA sequence:RefSeq:WP_004267842.1
COORDINATES: similar to AA sequence:RefSeq:WP_008453185.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895525.1
COORDINATES: similar to AA sequence:RefSeq:WP_006091105.1
COORDINATES: similar to AA sequence:RefSeq:WP_006091104.1
COORDINATES: similar to AA sequence:RefSeq:WP_006088576.1
COORDINATES: similar to AA sequence:RefSeq:WP_007109271.1
COORDINATES: similar to AA sequence:RefSeq:WP_006054798.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015321886.1
COORDINATES: similar to AA sequence:RefSeq:WP_013878584.1
COORDINATES: similar to AA sequence:RefSeq:WP_006067216.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008165194.1
GO:0008324 - monoatomic cation transmembrane transporter activity [Evidence IEA]
GO:0006813 - potassium ion transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015233176.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008158816.1
COORDINATES: similar to AA sequence:RefSeq:WP_006091094.1
COORDINATES: similar to AA sequence:RefSeq:WP_006091093.1
proton-conducting transporter membrane subunit
COORDINATES: similar to AA sequence:RefSeq:WP_006663836.1
COORDINATES: similar to AA sequence:RefSeq:WP_006091091.1
COORDINATES: similar to AA sequence:RefSeq:WP_006091090.1
COORDINATES: similar to AA sequence:RefSeq:WP_006067406.1
COORDINATES: similar to AA sequence:RefSeq:WP_008158802.1
GO:0051139 - metal cation:proton antiporter activity [Evidence IEA]
GO:0098662 - inorganic cation transmembrane transport [Evidence IEA]; GO:1902600 - proton transmembrane transport [Evidence IEA]
monovalent cation/H(+) antiporter subunit G
COORDINATES: similar to AA sequence:RefSeq:WP_006067404.1
COORDINATES: similar to AA sequence:RefSeq:WP_006091086.1
monovalent cation/H+ antiporter subunit E
COORDINATES: similar to AA sequence:RefSeq:WP_008158793.1
(2Fe-2S) ferredoxin domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004267806.1
COORDINATES: similar to AA sequence:RefSeq:WP_008158790.1
COORDINATES: similar to AA sequence:RefSeq:WP_006650392.1
CaiB/BaiF CoA-transferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007261367.1
COORDINATES: similar to AA sequence:RefSeq:WP_008158781.1
COORDINATES: similar to AA sequence:RefSeq:WP_006650390.1
GO:0016829 - lyase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012946036.1
GO:0004152 - dihydroorotate dehydrogenase activity [Evidence IEA]
GO:0006222 - UMP biosynthetic process [Evidence IEA]
quinone-dependent dihydroorotate dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_006091076.1
COORDINATES: similar to AA sequence:RefSeq:WP_008158773.1
COORDINATES: similar to AA sequence:RefSeq:WP_008158771.1
GO:0004252 - serine-type endopeptidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR04088.1
SipW-dependent-type signal peptide-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012946038.1
GO:0004038 - allantoinase activity [Evidence IEA]; GO:0050897 - cobalt ion binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
GO:0000256 - allantoin catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012946039.1
COORDINATES: similar to AA sequence:RefSeq:WP_006654392.1
COORDINATES: similar to AA sequence:RefSeq:WP_007142947.1
COORDINATES: similar to AA sequence:RefSeq:WP_008158754.1
COORDINATES: similar to AA sequence:RefSeq:WP_008453245.1
COORDINATES: similar to AA sequence:RefSeq:WP_007109246.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895651.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895650.1
COORDINATES: similar to AA sequence:RefSeq:WP_006091063.1
COORDINATES: similar to AA sequence:RefSeq:WP_006091062.1
COORDINATES: similar to AA sequence:RefSeq:WP_006067376.1
COORDINATES: similar to AA sequence:RefSeq:WP_015322541.1
COORDINATES: similar to AA sequence:RefSeq:WP_006067374.1
GO:0051287 - NAD binding [Evidence IEA]; GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]; GO:0003979 - UDP-glucose 6-dehydrogenase activity [Evidence IEA]
GO:0000271 - polysaccharide biosynthetic process [Evidence IEA]