Nomascus leucogenys isolate Asia chromosome 25, Asia_NLE_v1, whole genome shotgun sequence.
type: Entry
definition: Nomascus leucogenys isolate Asia chromosome 25, Asia_NLE_v1, whole genome shotgun sequence.
sequence version: NC_044405.1
sequence date: 2019-09-17
sequence: sequence
division: CON
label: NC_044405.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA564096
dblink: SAMN11124083
keyword: WGS
keyword: RefSeq
source: Nomascus leucogenys (northern white-cheeked gibbon)
organism: Nomascus leucogenys
taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hylobatidae; Nomascus.
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCM016969.1.\nAssembly name: Asia_NLE_v1\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the University of Washington on\n2019/07/02. The original whole-genome shotgun project has the\naccession VIFL00000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: University of Washington\nAssembly Date :: MAR-2019\nAssembly Method :: FALCON v. (git hash: 91e700c4) Nov 2015\nAssembly Name :: Asia_NLE_v1\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 79.7x\nSequencing Technology :: PacBio; Illumina\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Status :: Full annotation\nAnnotation Name :: Nomascus leucogenys Annotation\n Release 103\nAnnotation Version :: 103\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 8.2\nAnnotation Method :: Best-placed RefSeq; Gnomon\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\n##Genome-Annotation-Data-END##

sequence
subclass of: SO_0000340
sequence length: 31549279
topology: linear
so has quality: SO_0000987
location: 1..31549279
location: region:1-31549279:1
RO_0002162: 61853

NC_044405
type: RefSeq
SIO_000068: refseq

PRJNA564096
type: BioProject
SIO_000068: bioproject

SAMN11124083
type: BioSample
SIO_000068: biosample

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:31549279:1
position: 31549279
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-31549279:1:source
so part of: sequence
organism: Nomascus leucogenys
mol type: genomic DNA
isolate: Asia
bio material: CORIELL:NLL605
chromosome: 25
sex: female
tissue type: EB transformed lymphoblast cell line
dev stage: adult

61853
type: Taxonomy
SIO_000068: taxonomy

LIPI
type: Gene
subclass of: SO_0000704
RO_0002162: 61853
gene: LIPI
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(274687..367388)
location: region:274687-367388:-1
so has part: feature:274687-367388:-1:exon
subclass of: SO_0000010

100605541
type: Gene
SIO_000068: ncbigene

position:274687:-1
position: 274687
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:367388:-1
position: 367388
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:274687-367388:-1:exon

LIPI
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 61853
gene: LIPI
product: lipase I, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 1 Protein, and 13% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_004092279.2
SIO_010081: LIPI
subclass of: SO_0000673
so part of: LIPI
location: complement(join(274687..274958,310527..310703,317903..318014,328440..328544,330246..330413,340604..340705,342795..342903,345871..346256,367233..367388))
location: region:274687-367388:-1
so has part: feature:367233-367388:-1:exon
so has part: feature:345871-346256:-1:exon
so has part: feature:342795-342903:-1:exon
so has part: feature:340604-340705:-1:exon
so has part: feature:330246-330413:-1:exon
so has part: feature:328440-328544:-1:exon
so has part: feature:317903-318014:-1:exon
so has part: feature:310527-310703:-1:exon
so has part: feature:274687-274958:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:367233-367388:-1:exon

position:367233:-1
position: 367233
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:345871-346256:-1:exon

position:345871:-1
position: 345871
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:346256:-1
position: 346256
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:342795-342903:-1:exon

position:342795:-1
position: 342795
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:342903:-1
position: 342903
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:340604-340705:-1:exon

position:340604:-1
position: 340604
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:340705:-1
position: 340705
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:330246-330413:-1:exon

position:330246:-1
position: 330246
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:330413:-1
position: 330413
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:328440-328544:-1:exon

position:328440:-1
position: 328440
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:328544:-1
position: 328544
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:317903-318014:-1:exon

position:317903:-1
position: 317903
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:318014:-1
position: 318014
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:310527-310703:-1:exon

position:310527:-1
position: 310527
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:310703:-1
position: 310703
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:274687-274958:-1:exon

position:274958:-1
position: 274958
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LIPI
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 61853
gene: LIPI
product: lipase I, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, and 12% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_004092281.2
SIO_010081: LIPI
subclass of: SO_0000673
so part of: LIPI
location: complement(join(274687..274958,310527..310703,317903..318014,328458..328544,330246..330413,331402..331491,340604..340705,342795..342903,345871..346256,367233..367388))
location: region:274687-367388:-1
so has part: feature:367233-367388:-1:exon
so has part: feature:345871-346256:-1:exon
so has part: feature:342795-342903:-1:exon
so has part: feature:340604-340705:-1:exon
so has part: feature:331402-331491:-1:exon
so has part: feature:330246-330413:-1:exon
so has part: feature:328458-328544:-1:exon
so has part: feature:317903-318014:-1:exon
so has part: feature:310527-310703:-1:exon
so has part: feature:274687-274958:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:367233-367388:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:345871-346256:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:342795-342903:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:340604-340705:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:331402-331491:-1:exon

position:331402:-1
position: 331402
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:331491:-1
position: 331491
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:330246-330413:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:328458-328544:-1:exon

position:328458:-1
position: 328458
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:317903-318014:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:310527-310703:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:274687-274958:-1:exon

LIPI
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 61853
gene: LIPI
product: lipase I, transcript variant X5
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, and 14% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_012501777.2
SIO_010081: LIPI
subclass of: SO_0000673
so part of: LIPI
location: complement(join(274687..274958,328440..328544,330246..330413,331402..331491,340604..340705,342795..342903,345871..346256,367233..367388))
location: region:274687-367388:-1
so has part: feature:367233-367388:-1:exon
so has part: feature:345871-346256:-1:exon
so has part: feature:342795-342903:-1:exon
so has part: feature:340604-340705:-1:exon
so has part: feature:331402-331491:-1:exon
so has part: feature:330246-330413:-1:exon
so has part: feature:328440-328544:-1:exon
so has part: feature:274687-274958:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:367233-367388:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:345871-346256:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:342795-342903:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:340604-340705:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:331402-331491:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:330246-330413:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:328440-328544:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:274687-274958:-1:exon

LIPI
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 61853
gene: LIPI
product: lipase I, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 mRNAs, 3 Proteins, and 18% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_003263778.3
SIO_010081: LIPI
subclass of: SO_0000673
so part of: LIPI
location: complement(join(274687..274958,310527..310703,317903..318014,328440..328544,330246..330413,331402..331491,340604..340705,342795..342903,345871..346256,367233..367388))
location: region:274687-367388:-1
so has part: feature:367233-367388:-1:exon
so has part: feature:345871-346256:-1:exon
so has part: feature:342795-342903:-1:exon
so has part: feature:340604-340705:-1:exon
so has part: feature:331402-331491:-1:exon
so has part: feature:330246-330413:-1:exon
so has part: feature:328440-328544:-1:exon
so has part: feature:317903-318014:-1:exon
so has part: feature:310527-310703:-1:exon
so has part: feature:274687-274958:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:367233-367388:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:345871-346256:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:342795-342903:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:340604-340705:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:331402-331491:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:330246-330413:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:328440-328544:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:317903-318014:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:310527-310703:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:274687-274958:-1:exon

LIPI
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 61853
gene: LIPI
product: lipase I, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, and 21% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_004092280.2
SIO_010081: LIPI
subclass of: SO_0000673
so part of: LIPI
location: complement(join(274767..274958,310527..310703,317903..318014,328440..328544,330246..330308,331402..331491,340604..340705,342795..342903,345871..346256,367233..367324))
location: region:274767-367324:-1
so has part: feature:367233-367324:-1:exon
so has part: feature:345871-346256:-1:exon
so has part: feature:342795-342903:-1:exon
so has part: feature:340604-340705:-1:exon
so has part: feature:331402-331491:-1:exon
so has part: feature:330246-330308:-1:exon
so has part: feature:328440-328544:-1:exon
so has part: feature:317903-318014:-1:exon
so has part: feature:310527-310703:-1:exon
so has part: feature:274767-274958:-1:exon

position:274767:-1
position: 274767
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:367324:-1
position: 367324
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:367233-367324:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:345871-346256:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:342795-342903:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:340604-340705:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:331402-331491:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:330246-330308:-1:exon

position:330308:-1
position: 330308
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:328440-328544:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:317903-318014:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:310527-310703:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:274767-274958:-1:exon

LIPI
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61853
gene: LIPI
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: lipase member I isoform X5
translation: MRVYIFLCLMCWVRSENKRPCLEFSQQSVKDSFRDLFIPRIETILMMYTRNNLNCAEPLFEHNNSLNVNFNTQKKTVWLIHGYRPVGSIPSWLQNFLRILLNEEDMNVIVVDWSRGATTFIYNRAVKNTRKVAVSLSVHIKNLLKHGASLDNFHFIGVSLGAHISGFVGKIFHGQLGRITGLDPAGPRFSRKPPYSRLDYTDAKFVDVIHSDSNGLGIQEPLGHIDFYPNGGNKQPGCPKSIFSGIHFIKCNHQRAVHLFMASLETNCNFISFPCRSYKDYKTSLCVDCDCFKEKSCPQLGYQAKLFKDVLKERMEGRPLRTTVFLDTSGTYPFCNHHFAGIILYLKKERKCFLIQTHVHQRKHKMPFSIKCTCL
SIO_010081: LIPI
subclass of: SO_0000673
so part of: LIPI
location: complement(join(274837..274958,328440..328544,330246..330413,331402..331491,340604..340705,342795..342903,345871..346256,367233..367278))
location: region:274837-367278:-1
so has part: feature:367233-367278:-1:exon
so has part: feature:345871-346256:-1:exon
so has part: feature:342795-342903:-1:exon
so has part: feature:340604-340705:-1:exon
so has part: feature:331402-331491:-1:exon
so has part: feature:330246-330413:-1:exon
so has part: feature:328440-328544:-1:exon
so has part: feature:274837-274958:-1:exon

XP_012357231.2
type: Protein
SIO_000068: ncbiprotein

position:274837:-1
position: 274837
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:367278:-1
position: 367278
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:367233-367278:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:345871-346256:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:342795-342903:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:340604-340705:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:331402-331491:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:330246-330413:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:328440-328544:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:274837-274958:-1:exon

LIPI
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61853
gene: LIPI
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: lipase member I isoform X3
translation: MRVYIFLCLMCWVRSENKRPCLEFSQQSVKDSFRDLFIPRIETILMMYTRNNLNCAEPLFEHNNSLNVNFNTQKKTVWLIHGYRPVGSIPSWLQNFLRILLNEEDMNVIVVDWSRGATTFIYNRAVKNTRKVAVSLSVHIKNLLKHGASLDNFHFIGVSLGAHISGFVGKIFHGQLGRITGLDPAGPRFSRKPPYSRLDYTDAKFVDVIHSDSNGIHFIKCNHQRAVHLFMASLETNCNFISFPCRSYKDYKTSLCVDCDCFKEKSCPQLGYQAKLFKDVLKERMEGRPLRTTVFLDTSGTYPFCTYYFVLSIIVPDKTMMDGSFSFKLLNQLGMIEEPRLYEKNKPFYKLQEVKILAQFYNDFVNISSIGLTYFQSSNLQCSTCTYKIQSLMLKSLTYPERPPLCRYNIVLKEREEVFLNPNTCTPKKT
SIO_010081: LIPI
subclass of: SO_0000673
so part of: LIPI
location: complement(join(274871..274958,310527..310703,317903..318014,328440..328544,330246..330413,340604..340705,342795..342903,345871..346256,367233..367278))
location: region:274871-367278:-1
so has part: feature:367233-367278:-1:exon
so has part: feature:345871-346256:-1:exon
so has part: feature:342795-342903:-1:exon
so has part: feature:340604-340705:-1:exon
so has part: feature:330246-330413:-1:exon
so has part: feature:328440-328544:-1:exon
so has part: feature:317903-318014:-1:exon
so has part: feature:310527-310703:-1:exon
so has part: feature:274871-274958:-1:exon

XP_004092327.2
type: Protein
SIO_000068: ncbiprotein

position:274871:-1
position: 274871
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:367233-367278:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:345871-346256:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:342795-342903:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:340604-340705:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:330246-330413:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:328440-328544:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:317903-318014:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:310527-310703:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:274871-274958:-1:exon

LIPI
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61853
gene: LIPI
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: lipase member I isoform X4
translation: MRVYIFLCLMCWVRSENKRPCLEFSQQSVKDSFRDLFIPRIETILMMYTRNNLNCAEPLFEHNNSLNVNFNTQKKTVWLIHGYRPVGSIPSWLQNFLRILLNEEDMNVIVVDWSRGATTFIYNRAVKNTRKVAVSLSVHIKNLLKHGASLDNFHFIGVSLGAHISGFVGKIFHGQLGRITGLDPAGPRFSRKPPYSRLDYTDAKFVDVIHSDSNGLGIQEPLGHIDFYPNGGNKQPGCPKSIFSDYKTSLCVDCDCFKEKSCPQLGYQAKLFKDVLKERMEGRPLRTTVFLDTSGTYPFCTYYFVLSIIVPDKTMMDGSFSFKLLNQLGMIEEPRLYEKNKPFYKLQEVKILAQFYNDFVNISSIGLTYFQSSNLQCSTCTYKIQSLMLKSLTYPERPPLCRYNIVLKEREEVFLNPNTCTPKKT
SIO_010081: LIPI
subclass of: SO_0000673
so part of: LIPI
location: complement(join(274871..274958,310527..310703,317903..318014,328440..328544,330246..330308,331402..331491,340604..340705,342795..342903,345871..346256,367233..367278))
location: region:274871-367278:-1
so has part: feature:367233-367278:-1:exon
so has part: feature:345871-346256:-1:exon
so has part: feature:342795-342903:-1:exon
so has part: feature:340604-340705:-1:exon
so has part: feature:331402-331491:-1:exon
so has part: feature:330246-330308:-1:exon
so has part: feature:328440-328544:-1:exon
so has part: feature:317903-318014:-1:exon
so has part: feature:310527-310703:-1:exon
so has part: feature:274871-274958:-1:exon

XP_004092328.2
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:367233-367278:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:345871-346256:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:342795-342903:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:340604-340705:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:331402-331491:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:330246-330308:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:328440-328544:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:317903-318014:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:310527-310703:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:274871-274958:-1:exon

LIPI
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61853
gene: LIPI
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: lipase member I isoform X2
translation: MRVYIFLCLMCWVRSENKRPCLEFSQQSVKDSFRDLFIPRIETILMMYTRNNLNCAEPLFEHNNSLNVNFNTQKKTVWLIHGYRPVGSIPSWLQNFLRILLNEEDMNVIVVDWSRGATTFIYNRAVKNTRKVAVSLSVHIKNLLKHGASLDNFHFIGVSLGAHISGFVGKIFHGQLGRITGLDPAGPRFSRKPPYSRLDYTDAKFVDVIHSDSNGLGIQEPLGHIDFYPNGGNKQPGCPKSIFSGIHFIKCNHQRAVHLFMASLETNCNFISFPCRSYKDYKTSLCVDCDCFKEKSCPQLGYQAKLFKDVLKERMEGRPLRTTVFLDTSAYYFVLSIIVPDKTMMDGSFSFKLLNQLGMIEEPRLYEKNKPFYKLQEVKILAQFYNDFVNISSIGLTYFQSSNLQCSTCTYKIQSLMLKSLTYPERPPLCRYNIVLKEREEVFLNPNTCTPKKT
SIO_010081: LIPI
subclass of: SO_0000673
so part of: LIPI
location: complement(join(274871..274958,310527..310703,317903..318014,328458..328544,330246..330413,331402..331491,340604..340705,342795..342903,345871..346256,367233..367278))
location: region:274871-367278:-1
so has part: feature:367233-367278:-1:exon
so has part: feature:345871-346256:-1:exon
so has part: feature:342795-342903:-1:exon
so has part: feature:340604-340705:-1:exon
so has part: feature:331402-331491:-1:exon
so has part: feature:330246-330413:-1:exon
so has part: feature:328458-328544:-1:exon
so has part: feature:317903-318014:-1:exon
so has part: feature:310527-310703:-1:exon
so has part: feature:274871-274958:-1:exon

XP_004092329.2
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:367233-367278:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:345871-346256:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:342795-342903:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:340604-340705:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:331402-331491:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:330246-330413:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:328458-328544:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:317903-318014:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:310527-310703:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:274871-274958:-1:exon

LIPI
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61853
gene: LIPI
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: lipase member I isoform X1
translation: MRVYIFLCLMCWVRSENKRPCLEFSQQSVKDSFRDLFIPRIETILMMYTRNNLNCAEPLFEHNNSLNVNFNTQKKTVWLIHGYRPVGSIPSWLQNFLRILLNEEDMNVIVVDWSRGATTFIYNRAVKNTRKVAVSLSVHIKNLLKHGASLDNFHFIGVSLGAHISGFVGKIFHGQLGRITGLDPAGPRFSRKPPYSRLDYTDAKFVDVIHSDSNGLGIQEPLGHIDFYPNGGNKQPGCPKSIFSGIHFIKCNHQRAVHLFMASLETNCNFISFPCRSYKDYKTSLCVDCDCFKEKSCPQLGYQAKLFKDVLKERMEGRPLRTTVFLDTSGTYPFCTYYFVLSIIVPDKTMMDGSFSFKLLNQLGMIEEPRLYEKNKPFYKLQEVKILAQFYNDFVNISSIGLTYFQSSNLQCSTCTYKIQSLMLKSLTYPERPPLCRYNIVLKEREEVFLNPNTCTPKKT
SIO_010081: LIPI
subclass of: SO_0000673
so part of: LIPI
location: complement(join(274871..274958,310527..310703,317903..318014,328440..328544,330246..330413,331402..331491,340604..340705,342795..342903,345871..346256,367233..367278))
location: region:274871-367278:-1
so has part: feature:367233-367278:-1:exon
so has part: feature:345871-346256:-1:exon
so has part: feature:342795-342903:-1:exon
so has part: feature:340604-340705:-1:exon
so has part: feature:331402-331491:-1:exon
so has part: feature:330246-330413:-1:exon
so has part: feature:328440-328544:-1:exon
so has part: feature:317903-318014:-1:exon
so has part: feature:310527-310703:-1:exon
so has part: feature:274871-274958:-1:exon

XP_003263826.3
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:367233-367278:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:345871-346256:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:342795-342903:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:340604-340705:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:331402-331491:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:330246-330413:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:328440-328544:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:317903-318014:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:310527-310703:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:274871-274958:-1:exon

RBM11
type: Gene
subclass of: SO_0000704
RO_0002162: 61853
gene: RBM11
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 372600..384683
location: region:372600-384683:1
so has part: feature:372600-384683:1:exon
subclass of: SO_0000010

100605876
type: Gene
SIO_000068: ncbigene

position:372600:1
position: 372600
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:384683:1
position: 384683
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:372600-384683:1:exon

RBM11
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 61853
gene: RBM11
product: RNA binding motif protein 11
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 ESTs, 4 Proteins, and 93% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XM_003263779.4
SIO_010081: RBM11
subclass of: SO_0000673
so part of: RBM11
location: join(372600..372718,375997..376159,377529..377601,380875..380974,383327..384683)
location: region:372600-384683:1
so has part: feature:372600-372718:1:exon
so has part: feature:375997-376159:1:exon
so has part: feature:377529-377601:1:exon
so has part: feature:380875-380974:1:exon
so has part: feature:383327-384683:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:372600-372718:1:exon

position:372718:1
position: 372718
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:375997-376159:1:exon

position:375997:1
position: 375997
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:376159:1
position: 376159
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:377529-377601:1:exon

position:377529:1
position: 377529
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:377601:1
position: 377601
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:380875-380974:1:exon

position:380875:1
position: 380875
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:380974:1
position: 380974
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:383327-384683:1:exon

position:383327:1
position: 383327
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

RBM11
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61853
gene: RBM11
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: splicing regulator RBM11
translation: MFPAQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVQYRFGSSRSSEPANQSFESCVKINSHHYRDEEMVVGRSSFPMQYFPSNNTSLPQEYFLFQKMQWHVYNPVLQLPYYEMIAPLPNSASVSSSLNHVPDLEAGPSSYKWTHQQPSDSDLYQMNKRKRQKQTSDSDSSTDNNRGNECSQKFRKSKKKKRY
SIO_010081: RBM11
subclass of: SO_0000673
so part of: RBM11
location: join(372623..372718,375997..376159,377529..377601,380875..380974,383327..383614)
location: region:372623-383614:1
so has part: feature:372623-372718:1:exon
so has part: feature:375997-376159:1:exon
so has part: feature:377529-377601:1:exon
so has part: feature:380875-380974:1:exon
so has part: feature:383327-383614:1:exon

XP_003263827.2
type: Protein
SIO_000068: ncbiprotein

position:372623:1
position: 372623
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:383614:1
position: 383614
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:372623-372718:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:375997-376159:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:377529-377601:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:380875-380974:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:383327-383614:1:exon

LOC100607007
type: Gene
subclass of: SO_0000704
RO_0002162: 61853
gene: LOC100607007
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 430765..519091
location: region:430765-519091:1
so has part: feature:430765-519091:1:exon
subclass of: SO_0000010

100607007
type: Gene
SIO_000068: ncbigene

position:430765:1
position: 430765
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:519091:1
position: 519091
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:430765-519091:1:exon

LOC100607007
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 61853
gene: LOC100607007
product: multidrug resistance-associated protein 1-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
transcript id: XM_030806201.1
SIO_010081: LOC100607007
subclass of: SO_0000673
so part of: LOC100607007
location: join(430765..430830,436280..436341,444259..444406,445108..445250,452661..452838,454492..454746,457149..457214,459261..459398,461054..461200,463735..463819,463917..463983,464346..464472,468636..468812,471875..472042,473182..473344,479188..479263,492817..492877,493418..493637,501129..501283,504049..504204,508682..508881,509602..509728,511068..511169,513725..513868,515146..515304,517143..517309,518337..518531,518953..519091)
location: region:430765-519091:1
so has part: feature:430765-430830:1:exon
so has part: feature:436280-436341:1:exon
so has part: feature:444259-444406:1:exon
so has part: feature:445108-445250:1:exon
so has part: feature:452661-452838:1:exon
so has part: feature:454492-454746:1:exon
so has part: feature:457149-457214:1:exon
so has part: feature:459261-459398:1:exon
so has part: feature:461054-461200:1:exon
so has part: feature:463735-463819:1:exon
so has part: feature:463917-463983:1:exon
so has part: feature:464346-464472:1:exon
so has part: feature:468636-468812:1:exon
so has part: feature:471875-472042:1:exon
so has part: feature:473182-473344:1:exon
so has part: feature:479188-479263:1:exon
so has part: feature:492817-492877:1:exon
so has part: feature:493418-493637:1:exon
so has part: feature:501129-501283:1:exon
so has part: feature:504049-504204:1:exon
so has part: feature:508682-508881:1:exon
so has part: feature:509602-509728:1:exon
so has part: feature:511068-511169:1:exon
so has part: feature:513725-513868:1:exon
so has part: feature:515146-515304:1:exon
so has part: feature:517143-517309:1:exon
so has part: feature:518337-518531:1:exon
so has part: feature:518953-519091:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:430765-430830:1:exon

position:430830:1
position: 430830
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:436280-436341:1:exon

position:436280:1
position: 436280
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:436341:1
position: 436341
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:444259-444406:1:exon

position:444259:1
position: 444259
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:444406:1
position: 444406
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:445108-445250:1:exon

position:445108:1
position: 445108
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:445250:1
position: 445250
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:452661-452838:1:exon

position:452661:1
position: 452661
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:452838:1
position: 452838
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:454492-454746:1:exon

position:454492:1
position: 454492
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:454746:1
position: 454746
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:457149-457214:1:exon

position:457149:1
position: 457149
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:457214:1
position: 457214
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:459261-459398:1:exon

position:459261:1
position: 459261
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:459398:1
position: 459398
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:461054-461200:1:exon

position:461054:1
position: 461054
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:461200:1
position: 461200
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:463735-463819:1:exon

position:463735:1
position: 463735
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:463819:1
position: 463819
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:463917-463983:1:exon

position:463917:1
position: 463917
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:463983:1
position: 463983
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:464346-464472:1:exon

position:464346:1
position: 464346
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:464472:1
position: 464472
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:468636-468812:1:exon

position:468636:1
position: 468636
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:468812:1
position: 468812
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:471875-472042:1:exon

position:471875:1
position: 471875
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:472042:1
position: 472042
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:473182-473344:1:exon

position:473182:1
position: 473182
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:473344:1
position: 473344
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:479188-479263:1:exon

position:479188:1
position: 479188
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:479263:1
position: 479263
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:492817-492877:1:exon

position:492817:1
position: 492817
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:492877:1
position: 492877
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:493418-493637:1:exon

position:493418:1
position: 493418
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:493637:1
position: 493637
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:501129-501283:1:exon

position:501129:1
position: 501129
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:501283:1
position: 501283
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:504049-504204:1:exon

position:504049:1
position: 504049
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:504204:1
position: 504204
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:508682-508881:1:exon

position:508682:1
position: 508682
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:508881:1
position: 508881
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 22
SIO_000628: feature:509602-509728:1:exon

position:509602:1
position: 509602
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:509728:1
position: 509728
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 23
SIO_000628: feature:511068-511169:1:exon

position:511068:1
position: 511068
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:511169:1
position: 511169
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 24
SIO_000628: feature:513725-513868:1:exon

position:513725:1
position: 513725
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:513868:1
position: 513868
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 25
SIO_000628: feature:515146-515304:1:exon

position:515146:1
position: 515146
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:515304:1
position: 515304
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 26
SIO_000628: feature:517143-517309:1:exon

position:517143:1
position: 517143
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:517309:1
position: 517309
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 27
SIO_000628: feature:518337-518531:1:exon

position:518337:1
position: 518337
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:518531:1
position: 518531
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 28
SIO_000628: feature:518953-519091:1:exon

position:518953:1
position: 518953
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC100607007
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61853
gene: LOC100607007
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: multidrug resistance-associated protein 1-like
translation: MLSSPRNWGGSYQRVRGGLDAQKCSPEKSASFFSKVTYSWFSRVMTLGYERPLEREDLFELKESDSSYTVCPIFEKQWRKEVLRNQERQKVKASCYKEAHIKKPSLLYALWNTFKSVLIQVALFKVFADILSFTSPLIMKQMIIFCEHSSDFGWNGYGYAVALFVVVFLQTLILQQYQRFNMLTSAKVKTAVNGLIYKKALLLSNVSRQKFSTGEIINLMSADAQQLMDLTANLNLLWSAPFQILMAIYLLWQELGPAVLAGVAVLVFVIPINALAATKIKKLKKSQRKNKDKQIKLLKEILHGIKILKLYAWEPSYKNKIIKIRDQELEFQKSARYLTVFSMLTLTCIPFLVSLATLCVYFLLDEGNILTATKVFTSMSLFNILRIPLFELPTVISSVVQTKISLSRLGDFLNTEELPLQSIETNYIGDHAIGFTDASFSWDKTGMPVLKDLNIKIPEGALVAVVGQVGSGKSSVLSAILGEMEKLTGVVQRKGSVAYVSQQAWIQNCILQENILFGSIMKKEFYEQVLEACALLPDLEQLPKGDQTEIGERGVNISGGQQHRVSLARAVYSGADIYLLDDPLSAVDVHVGKQLFEKVIGSLGLLKNKTRILVTHNLTLLPQMDLIVVMKSGRIAQMGTYQELLCNTKNLTNLHQVISEQEKAHALKRVSAINSRTRPKDKILEQKHRPSLDQGKQLSMKKEKIPVGGLKFSIILQYLQAFGWLWVWLTVVTYLGQNLVSIGQNLWLSAWAKEAKNMNEFTEWKQIRSNKLNIYGLLGLIKGLFVCSGAYVITRGSLAASRTMYVQLLNNVLHLPIQFFETNSTGQIISRFTKDIFIIDMRLHYYLRLWVNCTLDVVGTVLVIVGALPLFILGIIPLVFFYFSIQRYYVASSRQIRRLTGASHSPVISHFSETLSGVSTIRAFGHEQRFIQQYKEVVNENLVCFYNNVISNRWLSVRLEFLGNLIVLFAALLAVLAGDSIDSAIVGLSVSYALNITHSLNFWVKKACEIETNAVAVERVCEYENMDKEAPWIMSRRPPLQWPNKGVVEFINYQARYRDDLGLALQDITFQTHGEEKIGIVGRTGAGKSTLSNCLFRIVERAGGKIIIDGIDISTIGLHDLRGKLNIIPQHPVLFSGTLQMNLDPLNKYSDSKLWEVLELCHLKEFVQSLPEKLLHEISEGGENLSMGQRQLVCLARALLRKTKILILDEATASIDFETDKLVQTTIRKEFSDCTILTIAHRLQSIIDSDRVLVLDSGRIVEFEAPQNLIRQKGLFYEMTTDAGITQDSGTKNKLL
SIO_010081: LOC100607007
subclass of: SO_0000673
so part of: LOC100607007
location: join(430765..430830,436280..436341,444259..444406,445108..445250,452661..452838,454492..454746,457149..457214,459261..459398,461054..461200,463735..463819,463917..463983,464346..464472,468636..468812,471875..472042,473182..473344,479188..479263,492817..492877,493418..493637,501129..501283,504049..504204,508682..508881,509602..509728,511068..511169,513725..513868,515146..515304,517143..517309,518337..518531,518953..519091)
location: region:430765-519091:1
so has part: feature:430765-430830:1:exon
so has part: feature:436280-436341:1:exon
so has part: feature:444259-444406:1:exon
so has part: feature:445108-445250:1:exon
so has part: feature:452661-452838:1:exon
so has part: feature:454492-454746:1:exon
so has part: feature:457149-457214:1:exon
so has part: feature:459261-459398:1:exon
so has part: feature:461054-461200:1:exon
so has part: feature:463735-463819:1:exon
so has part: feature:463917-463983:1:exon
so has part: feature:464346-464472:1:exon
so has part: feature:468636-468812:1:exon
so has part: feature:471875-472042:1:exon
so has part: feature:473182-473344:1:exon
so has part: feature:479188-479263:1:exon
so has part: feature:492817-492877:1:exon
so has part: feature:493418-493637:1:exon
so has part: feature:501129-501283:1:exon
so has part: feature:504049-504204:1:exon
so has part: feature:508682-508881:1:exon
so has part: feature:509602-509728:1:exon
so has part: feature:511068-511169:1:exon
so has part: feature:513725-513868:1:exon
so has part: feature:515146-515304:1:exon
so has part: feature:517143-517309:1:exon
so has part: feature:518337-518531:1:exon
so has part: feature:518953-519091:1:exon

XP_030662061.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:430765-430830:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:436280-436341:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:444259-444406:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:445108-445250:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:452661-452838:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:454492-454746:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:457149-457214:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:459261-459398:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:461054-461200:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:463735-463819:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:463917-463983:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:464346-464472:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:468636-468812:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:471875-472042:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:473182-473344:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:479188-479263:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:492817-492877:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:493418-493637:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:501129-501283:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:504049-504204:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:508682-508881:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:509602-509728:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:511068-511169:1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:513725-513868:1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:515146-515304:1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:517143-517309:1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:518337-518531:1:exon

urn:…
SIO_000300: 28
SIO_000628: feature:518953-519091:1:exon

HSPA13
type: Gene
subclass of: SO_0000704
RO_0002162: 61853
gene: HSPA13
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(527436..539607)
location: region:527436-539607:-1
so has part: feature:527436-539607:-1:exon
subclass of: SO_0000010

100606546
type: Gene
SIO_000068: ncbigene

position:527436:-1
position: 527436
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:539607:-1
position: 539607
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:527436-539607:-1:exon

HSPA13
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 61853
gene: HSPA13
product: heat shock protein family A (Hsp70) member 13
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 mRNAs, 459 ESTs, 10 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XM_003263780.3
SIO_010081: HSPA13
subclass of: SO_0000673
so part of: HSPA13
location: complement(join(527436..530627,532002..532169,534575..534788,537571..537911,539499..539607))
location: region:527436-539607:-1
so has part: feature:539499-539607:-1:exon
so has part: feature:537571-537911:-1:exon
so has part: feature:534575-534788:-1:exon
so has part: feature:532002-532169:-1:exon
so has part: feature:527436-530627:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:539499-539607:-1:exon

position:539499:-1
position: 539499
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:537571-537911:-1:exon

position:537571:-1
position: 537571
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:537911:-1
position: 537911
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:534575-534788:-1:exon

position:534575:-1
position: 534575
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:534788:-1
position: 534788
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:532002-532169:-1:exon

position:532002:-1
position: 532002
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:532169:-1
position: 532169
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:527436-530627:-1:exon

position:530627:-1
position: 530627
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

HSPA13
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61853
gene: HSPA13
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: heat shock 70 kDa protein 13
translation: MAREMTILGSAVLTLLLAGYLAQQYLPLPTPKVIGIDLGTTYCSVGVFFPGTGKVKVIPDENGHISIPSMVSFTDNDVYVGYESVELADSNPQNTIYDAKRFIGKIFTPEELEAEIGRYPFKVLNKNGMVEFSVTSNETITVSPEYVGSRLLLKLKEMAEAYLGMPVANAVISVPAEFDLKQRNSTIEAANLAGLKILRVINEPTAAAMAYGLHKADVFHVLVIDLGGGTLDVSLLNKQGGMFLTRAMSGNNKLGGQDFNQRLLQYLYKQIYQTYGFVPSRKEEIHRLRQAVEMVKLNLTLHQSAQLSVLLTVEEQDRKEPHSSDTELPEDKLSLADDRRVNSGFGRGLSDKKSGESQVLFETEISRKLFDTLNEDLFQKILVPIQQVLKEGHLEKTEIDEVVLVGGSTRIPRIRQVIQEFFGKDPNTSVDPDLAVVTGVAIQAGIDGGSWPLQVSALEIPNKHLQKTNFN
SIO_010081: HSPA13
subclass of: SO_0000673
so part of: HSPA13
location: complement(join(529960..530627,532002..532169,534575..534788,537571..537911,539499..539523))
location: region:529960-539523:-1
so has part: feature:539499-539523:-1:exon
so has part: feature:537571-537911:-1:exon
so has part: feature:534575-534788:-1:exon
so has part: feature:532002-532169:-1:exon
so has part: feature:529960-530627:-1:exon

XP_003263828.2
type: Protein
SIO_000068: ncbiprotein

position:529960:-1
position: 529960
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:539523:-1
position: 539523
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:539499-539523:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:537571-537911:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:534575-534788:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:532002-532169:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:529960-530627:-1:exon

SAMSN1
type: Gene
subclass of: SO_0000704
RO_0002162: 61853
gene: SAMSN1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(658808..750041)
location: region:658808-750041:-1
so has part: feature:658808-750041:-1:exon
subclass of: SO_0000010

100606895
type: Gene
SIO_000068: ncbigene

position:658808:-1
position: 658808
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:750041:-1
position: 750041
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:658808-750041:-1:exon

SAMSN1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 61853
gene: SAMSN1
product: SAM domain, SH3 domain and nuclear localization signals 1, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 21 ESTs, 4 Proteins, and 75% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_003263782.3
SIO_010081: SAMSN1
subclass of: SO_0000673
so part of: SAMSN1
location: complement(join(658808..659703,672427..672577,674520..674726,676712..676863,678843..678972,683274..683423,687391..687462,748476..748828,749960..750041))
location: region:658808-750041:-1
so has part: feature:749960-750041:-1:exon
so has part: feature:748476-748828:-1:exon
so has part: feature:687391-687462:-1:exon
so has part: feature:683274-683423:-1:exon
so has part: feature:678843-678972:-1:exon
so has part: feature:676712-676863:-1:exon
so has part: feature:674520-674726:-1:exon
so has part: feature:672427-672577:-1:exon
so has part: feature:658808-659703:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:749960-750041:-1:exon

position:749960:-1
position: 749960
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:748476-748828:-1:exon

position:748476:-1
position: 748476
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:748828:-1
position: 748828
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:687391-687462:-1:exon

position:687391:-1
position: 687391
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:687462:-1
position: 687462
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:683274-683423:-1:exon

position:683274:-1
position: 683274
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:683423:-1
position: 683423
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:678843-678972:-1:exon

position:678843:-1
position: 678843
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:678972:-1
position: 678972
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:676712-676863:-1:exon

position:676712:-1
position: 676712
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:676863:-1
position: 676863
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:674520-674726:-1:exon

position:674520:-1
position: 674520
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:674726:-1
position: 674726
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:672427-672577:-1:exon

position:672427:-1
position: 672427
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:672577:-1
position: 672577
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:658808-659703:-1:exon

position:659703:-1
position: 659703
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

SAMSN1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 61853
gene: SAMSN1
product: SAM domain, SH3 domain and nuclear localization signals 1, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 mRNAs, 55 ESTs, 5 Proteins, and 92% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XM_003263781.2
SIO_010081: SAMSN1
subclass of: SO_0000673
so part of: SAMSN1
location: complement(join(658808..659703,672427..672577,674520..674726,676712..676863,678843..678972,683274..683423,687391..687462,712551..712706))
location: region:658808-712706:-1
so has part: feature:712551-712706:-1:exon
so has part: feature:687391-687462:-1:exon
so has part: feature:683274-683423:-1:exon
so has part: feature:678843-678972:-1:exon
so has part: feature:676712-676863:-1:exon
so has part: feature:674520-674726:-1:exon
so has part: feature:672427-672577:-1:exon
so has part: feature:658808-659703:-1:exon

position:712706:-1
position: 712706
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:712551-712706:-1:exon

position:712551:-1
position: 712551
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:687391-687462:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:683274-683423:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:678843-678972:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:676712-676863:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:674520-674726:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:672427-672577:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:658808-659703:-1:exon

SAMSN1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61853
gene: SAMSN1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: SAM domain-containing protein SAMSN-1 isoform X1
translation: MEIRLDTLSASLGRSSTLNDCHLEDKLAWYEGEAYMWHHWKPFPENPLWTCVDFQIAQIGPWDHCSSCIRHTRLKSSCSDMDLLHSWRSSSFGNFDRFRNNSLSKPDDSTEAHEGDPTNESGEQSKTSNNGGGLGKKMRAISWTMKKKVGKKYIKALSEEKVEEDGENAHPYRNSDPVIGTHTEKVSLEASDSMDSLYSGQSSSSGITSCSDGTSNRDSFRLDDDGPYSGPFCGRARVHTDFTPSPYDTDSLKIKKGDIIDIICKTPMGMWTGMLNNKVGNFKFIYVDVISEEEAAPKKIKANRRSNNEKSKTLQEFLERIHLQEYTSTLLLNGYETLEDLKDIKESHLIELNIENPDDRRRLLSAAENFPEEEIIQEQENEPEPLSLSSDISLNKSQSDDCPRDSGCYVSSGNSDNGKEDLESENLSDMVHKITITEPSD
SIO_010081: SAMSN1
subclass of: SO_0000673
so part of: SAMSN1
location: complement(join(659501..659703,672427..672577,674520..674726,676712..676863,678843..678972,683274..683423,687391..687462,748476..748736))
location: region:659501-748736:-1
so has part: feature:748476-748736:-1:exon
so has part: feature:687391-687462:-1:exon
so has part: feature:683274-683423:-1:exon
so has part: feature:678843-678972:-1:exon
so has part: feature:676712-676863:-1:exon
so has part: feature:674520-674726:-1:exon
so has part: feature:672427-672577:-1:exon
so has part: feature:659501-659703:-1:exon

XP_003263830.1
type: Protein
SIO_000068: ncbiprotein

position:659501:-1
position: 659501
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:748736:-1
position: 748736
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:748476-748736:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:687391-687462:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:683274-683423:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:678843-678972:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:676712-676863:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:674520-674726:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:672427-672577:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:659501-659703:-1:exon

SAMSN1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61853
gene: SAMSN1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: SAM domain-containing protein SAMSN-1 isoform X2
translation: MLKRKPSNVSEKEKHQKPKRSSSFGNFDRFRNNSLSKPDDSTEAHEGDPTNESGEQSKTSNNGGGLGKKMRAISWTMKKKVGKKYIKALSEEKVEEDGENAHPYRNSDPVIGTHTEKVSLEASDSMDSLYSGQSSSSGITSCSDGTSNRDSFRLDDDGPYSGPFCGRARVHTDFTPSPYDTDSLKIKKGDIIDIICKTPMGMWTGMLNNKVGNFKFIYVDVISEEEAAPKKIKANRRSNNEKSKTLQEFLERIHLQEYTSTLLLNGYETLEDLKDIKESHLIELNIENPDDRRRLLSAAENFPEEEIIQEQENEPEPLSLSSDISLNKSQSDDCPRDSGCYVSSGNSDNGKEDLESENLSDMVHKITITEPSD
SIO_010081: SAMSN1
subclass of: SO_0000673
so part of: SAMSN1
location: complement(join(659501..659703,672427..672577,674520..674726,676712..676863,678843..678972,683274..683423,687391..687462,712551..712607))
location: region:659501-712607:-1
so has part: feature:712551-712607:-1:exon
so has part: feature:687391-687462:-1:exon
so has part: feature:683274-683423:-1:exon
so has part: feature:678843-678972:-1:exon
so has part: feature:676712-676863:-1:exon
so has part: feature:674520-674726:-1:exon
so has part: feature:672427-672577:-1:exon
so has part: feature:659501-659703:-1:exon

XP_003263829.1
type: Protein
SIO_000068: ncbiprotein

position:712607:-1
position: 712607
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:712551-712607:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:687391-687462:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:683274-683423:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:678843-678972:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:676712-676863:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:674520-674726:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:672427-672577:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:659501-659703:-1:exon

LOC100607341
type: Gene
subclass of: SO_0000704
RO_0002162: 61853
gene: LOC100607341
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(757168..824586)
location: region:757168-824586:-1
so has part: feature:757168-824586:-1:exon
subclass of: SO_0000010

100607341
type: Gene
SIO_000068: ncbigene

position:757168:-1
position: 757168
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:824586:-1
position: 824586
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:757168-824586:-1:exon

LOC100607341
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 61853
gene: LOC100607341
product: putative uncharacterized protein ENSP00000383407
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 1 Protein
transcript id: XM_030805979.1
SIO_010081: LOC100607341
subclass of: SO_0000673
so part of: LOC100607341
location: complement(join(757168..758423,759795..759860,768092..768168,775513..775599,778902..778939,782303..782343,811046..811177,824467..824586))
location: region:757168-824586:-1
so has part: feature:824467-824586:-1:exon
so has part: feature:811046-811177:-1:exon
so has part: feature:782303-782343:-1:exon
so has part: feature:778902-778939:-1:exon
so has part: feature:775513-775599:-1:exon
so has part: feature:768092-768168:-1:exon
so has part: feature:759795-759860:-1:exon
so has part: feature:757168-758423:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:824467-824586:-1:exon

position:824467:-1
position: 824467
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:811046-811177:-1:exon

position:811046:-1
position: 811046
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:811177:-1
position: 811177
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:782303-782343:-1:exon

position:782303:-1
position: 782303
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:782343:-1
position: 782343
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:778902-778939:-1:exon

position:778902:-1
position: 778902
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:778939:-1
position: 778939
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:775513-775599:-1:exon

position:775513:-1
position: 775513
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:775599:-1
position: 775599
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:768092-768168:-1:exon

position:768092:-1
position: 768092
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:768168:-1
position: 768168
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:759795-759860:-1:exon

position:759795:-1
position: 759795
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:759860:-1
position: 759860
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:757168-758423:-1:exon

position:758423:-1
position: 758423
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC100607341
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61853
gene: LOC100607341
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: putative uncharacterized protein ENSP00000383407
translation: MRTGQTAVKARESYNRRSYFSKQGNKRVKLVKMNLFCISLEGSMDSLYEPIPEQQANRENTSSRTDSPIPPFGESEQTPNNLFVGVSNLENAKPEKRKLFRRFMSENKIFEGKTVNDKIWQEHSKHKNDSHIRRPCQLKDLNEDDFLSNNIHTHQGKTLQGTSYQVTSECWSPFHYQRHVETTFDEMAQEFM
SIO_010081: LOC100607341
subclass of: SO_0000673
so part of: LOC100607341
location: complement(join(758406..758423,759795..759860,768092..768168,775513..775599,778902..778939,782303..782343,811046..811177,824467..824586))
location: region:758406-824586:-1
so has part: feature:824467-824586:-1:exon
so has part: feature:811046-811177:-1:exon
so has part: feature:782303-782343:-1:exon
so has part: feature:778902-778939:-1:exon
so has part: feature:775513-775599:-1:exon
so has part: feature:768092-768168:-1:exon
so has part: feature:759795-759860:-1:exon
so has part: feature:758406-758423:-1:exon

XP_030661839.1
type: Protein
SIO_000068: ncbiprotein

position:758406:-1
position: 758406
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:824467-824586:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:811046-811177:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:782303-782343:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:778902-778939:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:775513-775599:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:768092-768168:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:759795-759860:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:758406-758423:-1:exon

LOC100607686
type: Gene
subclass of: SO_0000704
RO_0002162: 61853
gene: LOC100607686
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 923755..930021
location: region:923755-930021:1
so has part: feature:923755-930021:1:exon

100607686
type: Gene
SIO_000068: ncbigene

position:923755:1
position: 923755
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:930021:1
position: 930021
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:923755-930021:1:exon

LOC100607686
type: Exon
subclass of: SO_0000147
RO_0002162: 61853
gene: LOC100607686
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins
pseudo: true
SIO_010081: LOC100607686
subclass of: SO_0000673
so part of: LOC100607686
location: 923755..923894
location: region:923755-923894:1
so has part: feature:923755-923894:1:exon

position:923894:1
position: 923894
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:923755-923894:1:exon

LOC100607686
type: Exon
subclass of: SO_0000147
RO_0002162: 61853
gene: LOC100607686
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins
pseudo: true
SIO_010081: LOC100607686
subclass of: SO_0000673
so part of: LOC100607686
location: 929226..930021
location: region:929226-930021:1
so has part: feature:929226-930021:1:exon

position:929226:1
position: 929226
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:929226-930021:1:exon

NRIP1
type: Gene
subclass of: SO_0000704
RO_0002162: 61853
gene: NRIP1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(1135231..1240471)
location: region:1135231-1240471:-1
so has part: feature:1135231-1240471:-1:exon
subclass of: SO_0000010

100607464
type: Gene
SIO_000068: ncbigene

position:1135231:-1
position: 1135231
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1240471:-1
position: 1240471
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1135231-1240471:-1:exon

NRIP1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 61853
gene: NRIP1
product: nuclear receptor interacting protein 1, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 250 ESTs, 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_012501914.2
SIO_010081: NRIP1
subclass of: SO_0000673
so part of: NRIP1
location: complement(join(1135231..1142529,1218637..1218716,1240201..1240471))
location: region:1135231-1240471:-1
so has part: feature:1240201-1240471:-1:exon
so has part: feature:1218637-1218716:-1:exon
so has part: feature:1135231-1142529:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1240201-1240471:-1:exon

position:1240201:-1
position: 1240201
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1218637-1218716:-1:exon

position:1218637:-1
position: 1218637
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1218716:-1
position: 1218716
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1135231-1142529:-1:exon

position:1142529:-1
position: 1142529
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

NRIP1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 61853
gene: NRIP1
product: nuclear receptor interacting protein 1, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 mRNAs, 250 ESTs, 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XM_003263783.2
SIO_010081: NRIP1
subclass of: SO_0000673
so part of: NRIP1
location: complement(join(1135231..1142529,1189053..1189175,1218637..1218716,1240201..1240471))
location: region:1135231-1240471:-1
so has part: feature:1240201-1240471:-1:exon
so has part: feature:1218637-1218716:-1:exon
so has part: feature:1189053-1189175:-1:exon
so has part: feature:1135231-1142529:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1240201-1240471:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1218637-1218716:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1189053-1189175:-1:exon

position:1189053:-1
position: 1189053
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1189175:-1
position: 1189175
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1135231-1142529:-1:exon

NRIP1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 61853
gene: NRIP1
product: nuclear receptor interacting protein 1, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 249 ESTs, 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XM_030806101.1
SIO_010081: NRIP1
subclass of: SO_0000673
so part of: NRIP1
location: complement(join(1135231..1142529,1153558..1153636))
location: region:1135231-1153636:-1
so has part: feature:1153558-1153636:-1:exon
so has part: feature:1135231-1142529:-1:exon

position:1153636:-1
position: 1153636
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1153558-1153636:-1:exon

position:1153558:-1
position: 1153558
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1135231-1142529:-1:exon

NRIP1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61853
gene: NRIP1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: nuclear receptor-interacting protein 1
translation: MTHGEELGSDVHQDSIVLTYLEGLLMHQAAGGSDTAIDKKSAGHNEEDQNFNISGSAFPTCQSNGPVLNTHTYQGSGMLHLKKARLLQSSEDWNAAKRKRLSDSIVNLNVKKEALLAGMVDSVPKGKQDSTLLASLLQSFSSRLQTVALSQQIRQSLKEQGYALSHDSLKVEKDLRCYGVASSHLKTLLKKSKVKDQKPDTNLPDVTKNLIRDRFAESPHHVGQSGTKVMSEPLSCAARLQAVASMVEKRASPATSPKPSVACSQLALLLSSEAHLQQYSREHALKTQNANQAASERLAAMARLQENGQKDVGSFQLPKGMSSHLNGQARTSSSKLMASKSSATAFQNPMGIIPSSPKNAGYKNSLERNNIKQAANNSLLLHLLKSQTIPKPMNGHSHSERGSIFEESSTPTTIDEYSDNNPSFTDDSSGDESSYSNCVPIDLSCKHRTEKLESDQPVSLDNFTQSLLNTWDPKVPDADIKEDQDTSKNSKLNSHQKVTLLQLLLGHKNEENVEKNTSPQGVHNDVTKFNTQNYARTSVIESPSTNRTTPVSTPPLLTSSKAGSPINLSQHSVVTKWNSPPYACSTQSEKLINTASNHSMDLTKSKDPPGEKPAQNEGAQNSATFSASKLLQNLAQCGMQSSMSVEEQRPSKQLLTGNTDKPIGMIDRLNSPLLSNKTNAVEENKAFSSQPTGPEPGLSGSEIENLLERRTVLQLLLGNPNKGKSEKKEKTPLRDESTQEHSERALSEQILMVKIKSEPCDDLQIPNTNVHLSHDAKSAPFLGMAPAVQRSAPALPVSEDFKSEPVSPQDFSFSKNGLLSRLLRQNQDNYLADDSDKSHRNNEMALLESKNLCMVPKKRKLYTEPLENPFKKMKNNIVDAANHHSAPEVLYGSLLNQEELKFSRNDLEFKYPAGHGSASESEHRSWARESKSFNVLKQLLLSENCVRDLSPHRSNSVADSKKKGHKNNVTNSKPEFSISSLNGLMYSSTQPSSCMDNRTFSYPGVVKTPVSPTFPEHLGCAGSRPESGLWNGCSMPSEKGPIKWVITDAEKNEYEKDSPRLTKTNPILYYMLQKGGNSVTSRETQDRDIWREPSSAESVSQVTVKEELLPTAESKASFFNLRSPYNSHMGNSASRPHSANGEVYGLLGNVLTIKKESE
SIO_010081: NRIP1
subclass of: SO_0000673
so part of: NRIP1
location: complement(1138722..1142198)
location: region:1138722-1142198:-1
so has part: feature:1138722-1142198:-1:exon

XP_003263831.2
type: Protein
SIO_000068: ncbiprotein

position:1138722:-1
position: 1138722
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1142198:-1
position: 1142198
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1138722-1142198:-1:exon

NRIP1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61853
gene: NRIP1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: nuclear receptor-interacting protein 1
translation: MTHGEELGSDVHQDSIVLTYLEGLLMHQAAGGSDTAIDKKSAGHNEEDQNFNISGSAFPTCQSNGPVLNTHTYQGSGMLHLKKARLLQSSEDWNAAKRKRLSDSIVNLNVKKEALLAGMVDSVPKGKQDSTLLASLLQSFSSRLQTVALSQQIRQSLKEQGYALSHDSLKVEKDLRCYGVASSHLKTLLKKSKVKDQKPDTNLPDVTKNLIRDRFAESPHHVGQSGTKVMSEPLSCAARLQAVASMVEKRASPATSPKPSVACSQLALLLSSEAHLQQYSREHALKTQNANQAASERLAAMARLQENGQKDVGSFQLPKGMSSHLNGQARTSSSKLMASKSSATAFQNPMGIIPSSPKNAGYKNSLERNNIKQAANNSLLLHLLKSQTIPKPMNGHSHSERGSIFEESSTPTTIDEYSDNNPSFTDDSSGDESSYSNCVPIDLSCKHRTEKLESDQPVSLDNFTQSLLNTWDPKVPDADIKEDQDTSKNSKLNSHQKVTLLQLLLGHKNEENVEKNTSPQGVHNDVTKFNTQNYARTSVIESPSTNRTTPVSTPPLLTSSKAGSPINLSQHSVVTKWNSPPYACSTQSEKLINTASNHSMDLTKSKDPPGEKPAQNEGAQNSATFSASKLLQNLAQCGMQSSMSVEEQRPSKQLLTGNTDKPIGMIDRLNSPLLSNKTNAVEENKAFSSQPTGPEPGLSGSEIENLLERRTVLQLLLGNPNKGKSEKKEKTPLRDESTQEHSERALSEQILMVKIKSEPCDDLQIPNTNVHLSHDAKSAPFLGMAPAVQRSAPALPVSEDFKSEPVSPQDFSFSKNGLLSRLLRQNQDNYLADDSDKSHRNNEMALLESKNLCMVPKKRKLYTEPLENPFKKMKNNIVDAANHHSAPEVLYGSLLNQEELKFSRNDLEFKYPAGHGSASESEHRSWARESKSFNVLKQLLLSENCVRDLSPHRSNSVADSKKKGHKNNVTNSKPEFSISSLNGLMYSSTQPSSCMDNRTFSYPGVVKTPVSPTFPEHLGCAGSRPESGLWNGCSMPSEKGPIKWVITDAEKNEYEKDSPRLTKTNPILYYMLQKGGNSVTSRETQDRDIWREPSSAESVSQVTVKEELLPTAESKASFFNLRSPYNSHMGNSASRPHSANGEVYGLLGNVLTIKKESE
SIO_010081: NRIP1
subclass of: SO_0000673
so part of: NRIP1
location: complement(1138722..1142198)
location: region:1138722-1142198:-1
so has part: feature:1138722-1142198:-1:exon

XP_012357368.2
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1138722-1142198:-1:exon

NRIP1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61853
gene: NRIP1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: nuclear receptor-interacting protein 1
translation: MTHGEELGSDVHQDSIVLTYLEGLLMHQAAGGSDTAIDKKSAGHNEEDQNFNISGSAFPTCQSNGPVLNTHTYQGSGMLHLKKARLLQSSEDWNAAKRKRLSDSIVNLNVKKEALLAGMVDSVPKGKQDSTLLASLLQSFSSRLQTVALSQQIRQSLKEQGYALSHDSLKVEKDLRCYGVASSHLKTLLKKSKVKDQKPDTNLPDVTKNLIRDRFAESPHHVGQSGTKVMSEPLSCAARLQAVASMVEKRASPATSPKPSVACSQLALLLSSEAHLQQYSREHALKTQNANQAASERLAAMARLQENGQKDVGSFQLPKGMSSHLNGQARTSSSKLMASKSSATAFQNPMGIIPSSPKNAGYKNSLERNNIKQAANNSLLLHLLKSQTIPKPMNGHSHSERGSIFEESSTPTTIDEYSDNNPSFTDDSSGDESSYSNCVPIDLSCKHRTEKLESDQPVSLDNFTQSLLNTWDPKVPDADIKEDQDTSKNSKLNSHQKVTLLQLLLGHKNEENVEKNTSPQGVHNDVTKFNTQNYARTSVIESPSTNRTTPVSTPPLLTSSKAGSPINLSQHSVVTKWNSPPYACSTQSEKLINTASNHSMDLTKSKDPPGEKPAQNEGAQNSATFSASKLLQNLAQCGMQSSMSVEEQRPSKQLLTGNTDKPIGMIDRLNSPLLSNKTNAVEENKAFSSQPTGPEPGLSGSEIENLLERRTVLQLLLGNPNKGKSEKKEKTPLRDESTQEHSERALSEQILMVKIKSEPCDDLQIPNTNVHLSHDAKSAPFLGMAPAVQRSAPALPVSEDFKSEPVSPQDFSFSKNGLLSRLLRQNQDNYLADDSDKSHRNNEMALLESKNLCMVPKKRKLYTEPLENPFKKMKNNIVDAANHHSAPEVLYGSLLNQEELKFSRNDLEFKYPAGHGSASESEHRSWARESKSFNVLKQLLLSENCVRDLSPHRSNSVADSKKKGHKNNVTNSKPEFSISSLNGLMYSSTQPSSCMDNRTFSYPGVVKTPVSPTFPEHLGCAGSRPESGLWNGCSMPSEKGPIKWVITDAEKNEYEKDSPRLTKTNPILYYMLQKGGNSVTSRETQDRDIWREPSSAESVSQVTVKEELLPTAESKASFFNLRSPYNSHMGNSASRPHSANGEVYGLLGNVLTIKKESE
SIO_010081: NRIP1
subclass of: SO_0000673
so part of: NRIP1
location: complement(1138722..1142198)
location: region:1138722-1142198:-1
so has part: feature:1138722-1142198:-1:exon

XP_030661961.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1138722-1142198:-1:exon

LOC115833144
type: Gene
subclass of: SO_0000704
RO_0002162: 61853
gene: LOC115833144
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(1668421..1679027)
location: region:1668421-1679027:-1
so has part: feature:1668421-1679027:-1:exon
subclass of: SO_0000011

115833144
type: Gene
SIO_000068: ncbigene

position:1668421:-1
position: 1668421
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1679027:-1
position: 1679027
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1668421-1679027:-1:exon

LOC115833144
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 61853
nc RNA class: lncRNA
gene: LOC115833144
product: uncharacterized LOC115833144
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XR_004028587.1
SIO_010081: LOC115833144
subclass of: SO_0000673
so part of: LOC115833144
location: complement(join(1668421..1670593,1675581..1675710,1678838..1679027))
location: region:1668421-1679027:-1
so has part: feature:1678838-1679027:-1:exon
so has part: feature:1675581-1675710:-1:exon
so has part: feature:1668421-1670593:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1678838-1679027:-1:exon

position:1678838:-1
position: 1678838
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1675581-1675710:-1:exon

position:1675581:-1
position: 1675581
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1675710:-1
position: 1675710
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1668421-1670593:-1:exon

position:1670593:-1
position: 1670593
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC115833168
type: Gene
subclass of: SO_0000704
RO_0002162: 61853
gene: LOC115833168
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(1747765..1801381)
location: region:1747765-1801381:-1
so has part: feature:1747765-1801381:-1:exon
subclass of: SO_0000011

115833168
type: Gene
SIO_000068: ncbigene

position:1747765:-1
position: 1747765
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1801381:-1
position: 1801381
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1747765-1801381:-1:exon

LOC115833168
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 61853
nc RNA class: lncRNA
gene: LOC115833168
product: uncharacterized LOC115833168
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XR_004028617.1
SIO_010081: LOC115833168
subclass of: SO_0000673
so part of: LOC115833168
location: complement(join(1747765..1747865,1751734..1751873,1760073..1760878,1763606..1763748,1801309..1801381))
location: region:1747765-1801381:-1
so has part: feature:1801309-1801381:-1:exon
so has part: feature:1763606-1763748:-1:exon
so has part: feature:1760073-1760878:-1:exon
so has part: feature:1751734-1751873:-1:exon
so has part: feature:1747765-1747865:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1801309-1801381:-1:exon

position:1801309:-1
position: 1801309
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1763606-1763748:-1:exon

position:1763606:-1
position: 1763606
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1763748:-1
position: 1763748
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1760073-1760878:-1:exon

position:1760073:-1
position: 1760073
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1760878:-1
position: 1760878
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1751734-1751873:-1:exon

position:1751734:-1
position: 1751734
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1751873:-1
position: 1751873
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:1747765-1747865:-1:exon

position:1747865:-1
position: 1747865
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC115833184
type: Gene
subclass of: SO_0000704
RO_0002162: 61853
gene: LOC115833184
note: Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: 1790552..1790658
location: region:1790552-1790658:1
so has part: feature:1790552-1790658:1:exon
subclass of: SO_0000623

115833184
type: Gene
SIO_000068: ncbigene

position:1790552:1
position: 1790552
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1790658:1
position: 1790658
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1790552-1790658:1:exon

LOC115833184
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 61853
nc RNA class: snRNA
gene: LOC115833184
product: U6 spliceosomal RNA
inference: COORDINATES: nucleotide motif:Rfam:12.0:RF00026
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_004028630.1
SIO_010081: LOC115833184
subclass of: SO_0000673
so part of: LOC115833184
location: 1790552..1790658
location: region:1790552-1790658:1
so has part: feature:1790552-1790658:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1790552-1790658:1:exon

LOC115833199
type: Gene
subclass of: SO_0000704
RO_0002162: 61853
gene: LOC115833199
note: Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: 1877508..1877616
location: region:1877508-1877616:1
so has part: feature:1877508-1877616:1:exon
subclass of: SO_0000578

115833199
type: Gene
SIO_000068: ncbigene

position:1877508:1
position: 1877508
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1877616:1
position: 1877616
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1877508-1877616:1:exon

LOC115833199
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 61853
nc RNA class: snoRNA
gene: LOC115833199
product: small nucleolar RNA U13
inference: COORDINATES: nucleotide motif:Rfam:12.0:RF01210
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_004028644.1
SIO_010081: LOC115833199
subclass of: SO_0000673
so part of: LOC115833199
location: 1877508..1877616
location: region:1877508-1877616:1
so has part: feature:1877508-1877616:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1877508-1877616:1:exon

USP25
type: Gene
subclass of: SO_0000704
RO_0002162: 61853
gene: USP25
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 1900294..2060310
location: region:1900294-2060310:1
so has part: feature:1900294-2060310:1:exon
subclass of: SO_0000010

100607808
type: Gene
SIO_000068: ncbigene

position:1900294:1
position: 1900294
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2060310:1
position: 2060310
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1900294-2060310:1:exon

USP25
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 61853
gene: USP25
product: ubiquitin specific peptidase 25, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 mRNAs, 182 ESTs, 11 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XM_030806028.1
SIO_010081: USP25
subclass of: SO_0000673
so part of: USP25
location: join(1900294..1900741,1933293..1933370,1936388..1936532,1949440..1949563,1964140..1964302,1972402..1972488,1977747..1977884,1981425..1981501,1983739..1983812,1991306..1991454,1996638..1996765,1997549..1997644,1998783..1998944,1999559..1999785,2003110..2003180,2003978..2004206,2005928..2006128,2014167..2014309,2042928..2043106,2044924..2045002,2048703..2048782,2053065..2053188,2058048..2058243,2058566..2060248)
location: region:1900294-2060248:1
so has part: feature:1900294-1900741:1:exon
so has part: feature:1933293-1933370:1:exon
so has part: feature:1936388-1936532:1:exon
so has part: feature:1949440-1949563:1:exon
so has part: feature:1964140-1964302:1:exon
so has part: feature:1972402-1972488:1:exon
so has part: feature:1977747-1977884:1:exon
so has part: feature:1981425-1981501:1:exon
so has part: feature:1983739-1983812:1:exon
so has part: feature:1991306-1991454:1:exon
so has part: feature:1996638-1996765:1:exon
so has part: feature:1997549-1997644:1:exon
so has part: feature:1998783-1998944:1:exon
so has part: feature:1999559-1999785:1:exon
so has part: feature:2003110-2003180:1:exon
so has part: feature:2003978-2004206:1:exon
so has part: feature:2005928-2006128:1:exon
so has part: feature:2014167-2014309:1:exon
so has part: feature:2042928-2043106:1:exon
so has part: feature:2044924-2045002:1:exon
so has part: feature:2048703-2048782:1:exon
so has part: feature:2053065-2053188:1:exon
so has part: feature:2058048-2058243:1:exon
so has part: feature:2058566-2060248:1:exon

position:2060248:1
position: 2060248
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1900294-1900741:1:exon

position:1900741:1
position: 1900741
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1933293-1933370:1:exon

position:1933293:1
position: 1933293
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1933370:1
position: 1933370
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1936388-1936532:1:exon

position:1936388:1
position: 1936388
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1936532:1
position: 1936532
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1949440-1949563:1:exon

position:1949440:1
position: 1949440
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1949563:1
position: 1949563
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:1964140-1964302:1:exon

position:1964140:1
position: 1964140
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1964302:1
position: 1964302
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:1972402-1972488:1:exon

position:1972402:1
position: 1972402
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1972488:1
position: 1972488
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:1977747-1977884:1:exon

position:1977747:1
position: 1977747
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1977884:1
position: 1977884
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:1981425-1981501:1:exon

position:1981425:1
position: 1981425
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1981501:1
position: 1981501
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:1983739-1983812:1:exon

position:1983739:1
position: 1983739
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1983812:1
position: 1983812
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:1991306-1991454:1:exon

position:1991306:1
position: 1991306
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1991454:1
position: 1991454
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:1996638-1996765:1:exon

position:1996638:1
position: 1996638
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1996765:1
position: 1996765
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:1997549-1997644:1:exon

position:1997549:1
position: 1997549
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1997644:1
position: 1997644
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:1998783-1998944:1:exon

position:1998783:1
position: 1998783
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1998944:1
position: 1998944
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:1999559-1999785:1:exon

position:1999559:1
position: 1999559
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1999785:1
position: 1999785
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:2003110-2003180:1:exon

position:2003110:1
position: 2003110
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2003180:1
position: 2003180
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:2003978-2004206:1:exon

position:2003978:1
position: 2003978
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2004206:1
position: 2004206
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:2005928-2006128:1:exon

position:2005928:1
position: 2005928
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2006128:1
position: 2006128
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:2014167-2014309:1:exon

position:2014167:1
position: 2014167
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2014309:1
position: 2014309
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:2042928-2043106:1:exon

position:2042928:1
position: 2042928
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2043106:1
position: 2043106
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:2044924-2045002:1:exon

position:2044924:1
position: 2044924
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2045002:1
position: 2045002
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:2048703-2048782:1:exon

position:2048703:1
position: 2048703
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2048782:1
position: 2048782
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 22
SIO_000628: feature:2053065-2053188:1:exon

position:2053065:1
position: 2053065
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2053188:1
position: 2053188
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 23
SIO_000628: feature:2058048-2058243:1:exon

position:2058048:1
position: 2058048
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2058243:1
position: 2058243
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 24
SIO_000628: feature:2058566-2060248:1:exon

position:2058566:1
position: 2058566
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

USP25
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 61853
gene: USP25
product: ubiquitin specific peptidase 25, transcript variant X5
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 164 ESTs, 4 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_012501904.2
SIO_010081: USP25
subclass of: SO_0000673
so part of: USP25
location: join(1900383..1900741,1933293..1933370,1936388..1936532,1949440..1949563,1964140..1964302,1972402..1972488,1977747..1977884,1981425..1981501,1983739..1983812,1991306..1991454,1996638..1996765,1997549..1997644,1998783..1998944,1999559..1999785,2003110..2003180,2003978..2004206,2005928..2006128,2014167..2014309,2019340..2019453,2021448..2021543,2042928..2043106,2044924..2045002,2048703..2048782,2053065..2053188,2058048..2058243,2058566..2060248)
location: region:1900383-2060248:1
so has part: feature:1900383-1900741:1:exon
so has part: feature:1933293-1933370:1:exon
so has part: feature:1936388-1936532:1:exon
so has part: feature:1949440-1949563:1:exon
so has part: feature:1964140-1964302:1:exon
so has part: feature:1972402-1972488:1:exon
so has part: feature:1977747-1977884:1:exon
so has part: feature:1981425-1981501:1:exon
so has part: feature:1983739-1983812:1:exon
so has part: feature:1991306-1991454:1:exon
so has part: feature:1996638-1996765:1:exon
so has part: feature:1997549-1997644:1:exon
so has part: feature:1998783-1998944:1:exon
so has part: feature:1999559-1999785:1:exon
so has part: feature:2003110-2003180:1:exon
so has part: feature:2003978-2004206:1:exon
so has part: feature:2005928-2006128:1:exon
so has part: feature:2014167-2014309:1:exon
so has part: feature:2019340-2019453:1:exon
so has part: feature:2021448-2021543:1:exon
so has part: feature:2042928-2043106:1:exon
so has part: feature:2044924-2045002:1:exon
so has part: feature:2048703-2048782:1:exon
so has part: feature:2053065-2053188:1:exon
so has part: feature:2058048-2058243:1:exon
so has part: feature:2058566-2060248:1:exon

position:1900383:1
position: 1900383
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1900383-1900741:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1933293-1933370:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1936388-1936532:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1949440-1949563:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1964140-1964302:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1972402-1972488:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1977747-1977884:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1981425-1981501:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1983739-1983812:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1991306-1991454:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1996638-1996765:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1997549-1997644:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:1998783-1998944:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:1999559-1999785:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:2003110-2003180:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:2003978-2004206:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:2005928-2006128:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:2014167-2014309:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:2019340-2019453:1:exon

position:2019340:1
position: 2019340
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2019453:1
position: 2019453
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:2021448-2021543:1:exon

position:2021448:1
position: 2021448
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2021543:1
position: 2021543
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:2042928-2043106:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:2044924-2045002:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:2048703-2048782:1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:2053065-2053188:1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:2058048-2058243:1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:2058566-2060248:1:exon

USP25
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61853
gene: USP25
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ubiquitin carboxyl-terminal hydrolase 25 isoform X4
translation: MTVEQNVLQQSAAQKHQQTFLNQLREITGINDTQILQQALKDSNGNLELAVAFLTAKNAKTPQQEETTYYQTALPGNDRYISVGSQADTNVIDLTGDDKDDLQRAIALSLAESNRAFRETGITDEEQAISRVLEASIAENKACLKRTPTEVWRDSRNPYDRKRQDKAPVGLKNVGNTCWFSAVIQSLFNLLEFRRLVLNYKPPSNAQDLPRNQKEHRNLPFMRELRYLFALLVGTKRKYVDPSRAVEILKDAFKSNDSQQQDVSEFTHKLLDWLEDAFQMKAEEETDEEKPKNPMVELFYGRFLAVGVLEGKKFENTEMFGQYPLQVNGFKDLHECLEAAMIEGEIESLHSENSGKSGQEHWFTELPPVLTFELSRFEFNQALGRPEKIHNKLEFPQVLYLDRYMHRNREITRIKREEIKRLKDYLTVLQQRLERYLSYGSGPKRFPLVDVLQYALEFASSKPVCTSPVDDIDASSPPSGSIPSQTLPSTTEQQGAPSSELPSTSPSSVAAISSRSVIHKPFTQSRIPPDLPMHPAPRHITEEELSVLESCLHRWRTEIENDTRDLQESISRIHRTIELMYSDKSMIQVPYRLHAVLVHEGQANAGHYWAYIFDHRESRWMKYNDIAVTKSSWEELVRDSFGGYRNASAYCLMYINDKAQFLIQEEFNKETGQPLVGIETLPPDLRDFVEEDNQRFEKELEEWDAQLAQKALQEKLLASQKLRESETSVTTAQAAGDPEYLEQPSRSDFSKHLKEETIRIITKASHEHEDKSPETVLQSKPENTTSQPLSNQRVVEVAIPHVGKFMIESKEGGYDDEIMMTPNMQGIIMAIGKSRSVYDRCGPEAGFFKAIKLEYARLVKLAQEDTPPETDYRLHHVVVYFIQNQAPKKIIEKTLLEQFGDRNLSFDERCHNIMKVAQAKLEMIKPEEVNLEQYEEWHQDYRKFRETTMYLIIGLENFQRESYIDSLLFLICAYQNNKELLSKGLYRGHDEELISHYRRECLLKLNEQAAELFESGEDREVNNGLIIMNEFIVPFLPLLLVDEMEEKDILAVEDMRNRWCSYLGQEMEPHLQEKLTDFLPKLLDCSMEIKSFHEPPKLPSYSTHELCERFARIMLSLSRTPADGR
SIO_010081: USP25
subclass of: SO_0000673
so part of: USP25
location: join(1900697..1900741,1933293..1933370,1936388..1936532,1949440..1949563,1964140..1964302,1972402..1972488,1977747..1977884,1981425..1981501,1983739..1983812,1991306..1991454,1996638..1996765,1997549..1997644,1998783..1998944,1999559..1999785,2003110..2003180,2003978..2004206,2005928..2006128,2014167..2014309,2019340..2019453,2021448..2021543,2042928..2043106,2044924..2045002,2048703..2048782,2053065..2053188,2058048..2058243,2058566..2058738)
location: region:1900697-2058738:1
so has part: feature:1900697-1900741:1:exon
so has part: feature:1933293-1933370:1:exon
so has part: feature:1936388-1936532:1:exon
so has part: feature:1949440-1949563:1:exon
so has part: feature:1964140-1964302:1:exon
so has part: feature:1972402-1972488:1:exon
so has part: feature:1977747-1977884:1:exon
so has part: feature:1981425-1981501:1:exon
so has part: feature:1983739-1983812:1:exon
so has part: feature:1991306-1991454:1:exon
so has part: feature:1996638-1996765:1:exon
so has part: feature:1997549-1997644:1:exon
so has part: feature:1998783-1998944:1:exon
so has part: feature:1999559-1999785:1:exon
so has part: feature:2003110-2003180:1:exon
so has part: feature:2003978-2004206:1:exon
so has part: feature:2005928-2006128:1:exon
so has part: feature:2014167-2014309:1:exon
so has part: feature:2019340-2019453:1:exon
so has part: feature:2021448-2021543:1:exon
so has part: feature:2042928-2043106:1:exon
so has part: feature:2044924-2045002:1:exon
so has part: feature:2048703-2048782:1:exon
so has part: feature:2053065-2053188:1:exon
so has part: feature:2058048-2058243:1:exon
so has part: feature:2058566-2058738:1:exon

XP_012357358.2
type: Protein
SIO_000068: ncbiprotein

position:1900697:1
position: 1900697
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2058738:1
position: 2058738
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1900697-1900741:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1933293-1933370:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1936388-1936532:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1949440-1949563:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1964140-1964302:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1972402-1972488:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1977747-1977884:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1981425-1981501:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1983739-1983812:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1991306-1991454:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1996638-1996765:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1997549-1997644:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:1998783-1998944:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:1999559-1999785:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:2003110-2003180:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:2003978-2004206:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:2005928-2006128:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:2014167-2014309:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:2019340-2019453:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:2021448-2021543:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:2042928-2043106:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:2044924-2045002:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:2048703-2048782:1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:2053065-2053188:1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:2058048-2058243:1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:2058566-2058738:1:exon

USP25
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61853
gene: USP25
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ubiquitin carboxyl-terminal hydrolase 25 isoform X1
translation: MTVEQNVLQQSAAQKHQQTFLNQLREITGINDTQILQQALKDSNGNLELAVAFLTAKNAKTPQQEETTYYQTALPGNDRYISVGSQADTNVIDLTGDDKDDLQRAIALSLAESNRAFRETGITDEEQAISRVLEASIAENKACLKRTPTEVWRDSRNPYDRKRQDKAPVGLKNVGNTCWFSAVIQSLFNLLEFRRLVLNYKPPSNAQDLPRNQKEHRNLPFMRELRYLFALLVGTKRKYVDPSRAVEILKDAFKSNDSQQQDVSEFTHKLLDWLEDAFQMKAEEETDEEKPKNPMVELFYGRFLAVGVLEGKKFENTEMFGQYPLQVNGFKDLHECLEAAMIEGEIESLHSENSGKSGQEHWFTELPPVLTFELSRFEFNQALGRPEKIHNKLEFPQVLYLDRYMHRNREITRIKREEIKRLKDYLTVLQQRLERYLSYGSGPKRFPLVDVLQYALEFASSKPVCTSPVDDIDASSPPSGSIPSQTLPSTTEQQGAPSSELPSTSPSSVAAISSRSVIHKPFTQSRIPPDLPMHPAPRHITEEELSVLESCLHRWRTEIENDTRDLQESISRIHRTIELMYSDKSMIQVPYRLHAVLVHEGQANAGHYWAYIFDHRESRWMKYNDIAVTKSSWEELVRDSFGGYRNASAYCLMYINDKAQFLIQEEFNKETGQPLVGIETLPPDLRDFVEEDNQRFEKELEEWDAQLAQKALQEKLLASQKLRESETSVTTAQAAGDPEYLEQPSRSDFSKHLKEETIRIITKASHEHEDKSPETVLQSAIKLEYARLVKLAQEDTPPETDYRLHHVVVYFIQNQAPKKIIEKTLLEQFGDRNLSFDERCHNIMKVAQAKLEMIKPEEVNLEQYEEWHQDYRKFRETTMYLIIGLENFQRESYIDSLLFLICAYQNNKELLSKGLYRGHDEELISHYRRECLLKLNEQAAELFESGEDREVNNGLIIMNEFIVPFLPLLLVDEMEEKDILAVEDMRNRWCSYLGQEMEPHLQEKLTDFLPKLLDCSMEIKSFHEPPKLPSYSTHELCERFARIMLSLSRTPADGR
SIO_010081: USP25
subclass of: SO_0000673
so part of: USP25
location: join(1900697..1900741,1933293..1933370,1936388..1936532,1949440..1949563,1964140..1964302,1972402..1972488,1977747..1977884,1981425..1981501,1983739..1983812,1991306..1991454,1996638..1996765,1997549..1997644,1998783..1998944,1999559..1999785,2003110..2003180,2003978..2004206,2005928..2006128,2014167..2014309,2042928..2043106,2044924..2045002,2048703..2048782,2053065..2053188,2058048..2058243,2058566..2058738)
location: region:1900697-2058738:1
so has part: feature:1900697-1900741:1:exon
so has part: feature:1933293-1933370:1:exon
so has part: feature:1936388-1936532:1:exon
so has part: feature:1949440-1949563:1:exon
so has part: feature:1964140-1964302:1:exon
so has part: feature:1972402-1972488:1:exon
so has part: feature:1977747-1977884:1:exon
so has part: feature:1981425-1981501:1:exon
so has part: feature:1983739-1983812:1:exon
so has part: feature:1991306-1991454:1:exon
so has part: feature:1996638-1996765:1:exon
so has part: feature:1997549-1997644:1:exon
so has part: feature:1998783-1998944:1:exon
so has part: feature:1999559-1999785:1:exon
so has part: feature:2003110-2003180:1:exon
so has part: feature:2003978-2004206:1:exon
so has part: feature:2005928-2006128:1:exon
so has part: feature:2014167-2014309:1:exon
so has part: feature:2042928-2043106:1:exon
so has part: feature:2044924-2045002:1:exon
so has part: feature:2048703-2048782:1:exon
so has part: feature:2053065-2053188:1:exon
so has part: feature:2058048-2058243:1:exon
so has part: feature:2058566-2058738:1:exon

XP_030661888.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1900697-1900741:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1933293-1933370:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1936388-1936532:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1949440-1949563:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1964140-1964302:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1972402-1972488:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1977747-1977884:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1981425-1981501:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1983739-1983812:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1991306-1991454:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1996638-1996765:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1997549-1997644:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:1998783-1998944:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:1999559-1999785:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:2003110-2003180:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:2003978-2004206:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:2005928-2006128:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:2014167-2014309:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:2042928-2043106:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:2044924-2045002:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:2048703-2048782:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:2053065-2053188:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:2058048-2058243:1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:2058566-2058738:1:exon

USP25
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 61853
gene: USP25
product: ubiquitin specific peptidase 25, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 170 ESTs, 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XM_030806029.1
SIO_010081: USP25
subclass of: SO_0000673
so part of: USP25
location: join(1933291..1933370,1936393..1936532,1949440..1949563,1964140..1964302,1972402..1972488,1977747..1977884,1981425..1981501,1983739..1983812,1991306..1991454,1996638..1996765,1997549..1997644,1998783..1998944,1999559..1999785,2003110..2003180,2003978..2004206,2005928..2006128,2014167..2014309,2042928..2043106,2044924..2045002,2048703..2048782,2053065..2053188,2058048..2058243,2058566..2060310)
location: region:1933291-2060310:1
so has part: feature:1933291-1933370:1:exon
so has part: feature:1936393-1936532:1:exon
so has part: feature:1949440-1949563:1:exon
so has part: feature:1964140-1964302:1:exon
so has part: feature:1972402-1972488:1:exon
so has part: feature:1977747-1977884:1:exon
so has part: feature:1981425-1981501:1:exon
so has part: feature:1983739-1983812:1:exon
so has part: feature:1991306-1991454:1:exon
so has part: feature:1996638-1996765:1:exon
so has part: feature:1997549-1997644:1:exon
so has part: feature:1998783-1998944:1:exon
so has part: feature:1999559-1999785:1:exon
so has part: feature:2003110-2003180:1:exon
so has part: feature:2003978-2004206:1:exon
so has part: feature:2005928-2006128:1:exon
so has part: feature:2014167-2014309:1:exon
so has part: feature:2042928-2043106:1:exon
so has part: feature:2044924-2045002:1:exon
so has part: feature:2048703-2048782:1:exon
so has part: feature:2053065-2053188:1:exon
so has part: feature:2058048-2058243:1:exon
so has part: feature:2058566-2060310:1:exon

position:1933291:1
position: 1933291
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1933291-1933370:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1936393-1936532:1:exon

position:1936393:1
position: 1936393
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1949440-1949563:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1964140-1964302:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1972402-1972488:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1977747-1977884:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1981425-1981501:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1983739-1983812:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1991306-1991454:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1996638-1996765:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1997549-1997644:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1998783-1998944:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:1999559-1999785:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:2003110-2003180:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:2003978-2004206:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:2005928-2006128:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:2014167-2014309:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:2042928-2043106:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:2044924-2045002:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:2048703-2048782:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:2053065-2053188:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:2058048-2058243:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:2058566-2060310:1:exon

USP25
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 61853
gene: USP25
product: ubiquitin specific peptidase 25, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 164 ESTs, 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_030806030.1
SIO_010081: USP25
subclass of: SO_0000673
so part of: USP25
location: join(1949591..1949595,1964140..1964302,1972402..1972488,1977747..1977884,1981425..1981501,1983739..1983812,1991306..1991454,1996638..1996765,1997549..1997644,1998783..1998944,1999559..1999785,2003110..2003180,2003978..2004206,2005928..2006128,2014167..2014309,2042928..2043106,2044924..2045002,2048703..2048782,2053065..2053188,2058048..2058243,2058566..2060310)
location: region:1949591-2060310:1
so has part: feature:1949591-1949595:1:exon
so has part: feature:1964140-1964302:1:exon
so has part: feature:1972402-1972488:1:exon
so has part: feature:1977747-1977884:1:exon
so has part: feature:1981425-1981501:1:exon
so has part: feature:1983739-1983812:1:exon
so has part: feature:1991306-1991454:1:exon
so has part: feature:1996638-1996765:1:exon
so has part: feature:1997549-1997644:1:exon
so has part: feature:1998783-1998944:1:exon
so has part: feature:1999559-1999785:1:exon
so has part: feature:2003110-2003180:1:exon
so has part: feature:2003978-2004206:1:exon
so has part: feature:2005928-2006128:1:exon
so has part: feature:2014167-2014309:1:exon
so has part: feature:2042928-2043106:1:exon
so has part: feature:2044924-2045002:1:exon
so has part: feature:2048703-2048782:1:exon
so has part: feature:2053065-2053188:1:exon
so has part: feature:2058048-2058243:1:exon
so has part: feature:2058566-2060310:1:exon

position:1949591:1
position: 1949591
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1949591-1949595:1:exon

position:1949595:1
position: 1949595
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1964140-1964302:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1972402-1972488:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1977747-1977884:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1981425-1981501:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1983739-1983812:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1991306-1991454:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1996638-1996765:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1997549-1997644:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1998783-1998944:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1999559-1999785:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:2003110-2003180:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:2003978-2004206:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:2005928-2006128:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:2014167-2014309:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:2042928-2043106:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:2044924-2045002:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:2048703-2048782:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:2053065-2053188:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:2058048-2058243:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:2058566-2060310:1:exon

USP25
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61853
gene: USP25
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ubiquitin carboxyl-terminal hydrolase 25 isoform X2
translation: MRELRYLFALLVGTKRKYVDPSRAVEILKDAFKSNDSQQQDVSEFTHKLLDWLEDAFQMKAEEETDEEKPKNPMVELFYGRFLAVGVLEGKKFENTEMFGQYPLQVNGFKDLHECLEAAMIEGEIESLHSENSGKSGQEHWFTELPPVLTFELSRFEFNQALGRPEKIHNKLEFPQVLYLDRYMHRNREITRIKREEIKRLKDYLTVLQQRLERYLSYGSGPKRFPLVDVLQYALEFASSKPVCTSPVDDIDASSPPSGSIPSQTLPSTTEQQGAPSSELPSTSPSSVAAISSRSVIHKPFTQSRIPPDLPMHPAPRHITEEELSVLESCLHRWRTEIENDTRDLQESISRIHRTIELMYSDKSMIQVPYRLHAVLVHEGQANAGHYWAYIFDHRESRWMKYNDIAVTKSSWEELVRDSFGGYRNASAYCLMYINDKAQFLIQEEFNKETGQPLVGIETLPPDLRDFVEEDNQRFEKELEEWDAQLAQKALQEKLLASQKLRESETSVTTAQAAGDPEYLEQPSRSDFSKHLKEETIRIITKASHEHEDKSPETVLQSAIKLEYARLVKLAQEDTPPETDYRLHHVVVYFIQNQAPKKIIEKTLLEQFGDRNLSFDERCHNIMKVAQAKLEMIKPEEVNLEQYEEWHQDYRKFRETTMYLIIGLENFQRESYIDSLLFLICAYQNNKELLSKGLYRGHDEELISHYRRECLLKLNEQAAELFESGEDREVNNGLIIMNEFIVPFLPLLLVDEMEEKDILAVEDMRNRWCSYLGQEMEPHLQEKLTDFLPKLLDCSMEIKSFHEPPKLPSYSTHELCERFARIMLSLSRTPADGR
SIO_010081: USP25
subclass of: SO_0000673
so part of: USP25
location: join(1977768..1977884,1981425..1981501,1983739..1983812,1991306..1991454,1996638..1996765,1997549..1997644,1998783..1998944,1999559..1999785,2003110..2003180,2003978..2004206,2005928..2006128,2014167..2014309,2042928..2043106,2044924..2045002,2048703..2048782,2053065..2053188,2058048..2058243,2058566..2058738)
location: region:1977768-2058738:1
so has part: feature:1977768-1977884:1:exon
so has part: feature:1981425-1981501:1:exon
so has part: feature:1983739-1983812:1:exon
so has part: feature:1991306-1991454:1:exon
so has part: feature:1996638-1996765:1:exon
so has part: feature:1997549-1997644:1:exon
so has part: feature:1998783-1998944:1:exon
so has part: feature:1999559-1999785:1:exon
so has part: feature:2003110-2003180:1:exon
so has part: feature:2003978-2004206:1:exon
so has part: feature:2005928-2006128:1:exon
so has part: feature:2014167-2014309:1:exon
so has part: feature:2042928-2043106:1:exon
so has part: feature:2044924-2045002:1:exon
so has part: feature:2048703-2048782:1:exon
so has part: feature:2053065-2053188:1:exon
so has part: feature:2058048-2058243:1:exon
so has part: feature:2058566-2058738:1:exon

XP_030661889.1
type: Protein
SIO_000068: ncbiprotein

position:1977768:1
position: 1977768
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1977768-1977884:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1981425-1981501:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1983739-1983812:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1991306-1991454:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1996638-1996765:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1997549-1997644:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1998783-1998944:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1999559-1999785:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2003110-2003180:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:2003978-2004206:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:2005928-2006128:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:2014167-2014309:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:2042928-2043106:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:2044924-2045002:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:2048703-2048782:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:2053065-2053188:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:2058048-2058243:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:2058566-2058738:1:exon

USP25
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61853
gene: USP25
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ubiquitin carboxyl-terminal hydrolase 25 isoform X2
translation: MRELRYLFALLVGTKRKYVDPSRAVEILKDAFKSNDSQQQDVSEFTHKLLDWLEDAFQMKAEEETDEEKPKNPMVELFYGRFLAVGVLEGKKFENTEMFGQYPLQVNGFKDLHECLEAAMIEGEIESLHSENSGKSGQEHWFTELPPVLTFELSRFEFNQALGRPEKIHNKLEFPQVLYLDRYMHRNREITRIKREEIKRLKDYLTVLQQRLERYLSYGSGPKRFPLVDVLQYALEFASSKPVCTSPVDDIDASSPPSGSIPSQTLPSTTEQQGAPSSELPSTSPSSVAAISSRSVIHKPFTQSRIPPDLPMHPAPRHITEEELSVLESCLHRWRTEIENDTRDLQESISRIHRTIELMYSDKSMIQVPYRLHAVLVHEGQANAGHYWAYIFDHRESRWMKYNDIAVTKSSWEELVRDSFGGYRNASAYCLMYINDKAQFLIQEEFNKETGQPLVGIETLPPDLRDFVEEDNQRFEKELEEWDAQLAQKALQEKLLASQKLRESETSVTTAQAAGDPEYLEQPSRSDFSKHLKEETIRIITKASHEHEDKSPETVLQSAIKLEYARLVKLAQEDTPPETDYRLHHVVVYFIQNQAPKKIIEKTLLEQFGDRNLSFDERCHNIMKVAQAKLEMIKPEEVNLEQYEEWHQDYRKFRETTMYLIIGLENFQRESYIDSLLFLICAYQNNKELLSKGLYRGHDEELISHYRRECLLKLNEQAAELFESGEDREVNNGLIIMNEFIVPFLPLLLVDEMEEKDILAVEDMRNRWCSYLGQEMEPHLQEKLTDFLPKLLDCSMEIKSFHEPPKLPSYSTHELCERFARIMLSLSRTPADGR
SIO_010081: USP25
subclass of: SO_0000673
so part of: USP25
location: join(1977768..1977884,1981425..1981501,1983739..1983812,1991306..1991454,1996638..1996765,1997549..1997644,1998783..1998944,1999559..1999785,2003110..2003180,2003978..2004206,2005928..2006128,2014167..2014309,2042928..2043106,2044924..2045002,2048703..2048782,2053065..2053188,2058048..2058243,2058566..2058738)
location: region:1977768-2058738:1
so has part: feature:1977768-1977884:1:exon
so has part: feature:1981425-1981501:1:exon
so has part: feature:1983739-1983812:1:exon
so has part: feature:1991306-1991454:1:exon
so has part: feature:1996638-1996765:1:exon
so has part: feature:1997549-1997644:1:exon
so has part: feature:1998783-1998944:1:exon
so has part: feature:1999559-1999785:1:exon
so has part: feature:2003110-2003180:1:exon
so has part: feature:2003978-2004206:1:exon
so has part: feature:2005928-2006128:1:exon
so has part: feature:2014167-2014309:1:exon
so has part: feature:2042928-2043106:1:exon
so has part: feature:2044924-2045002:1:exon
so has part: feature:2048703-2048782:1:exon
so has part: feature:2053065-2053188:1:exon
so has part: feature:2058048-2058243:1:exon
so has part: feature:2058566-2058738:1:exon

XP_030661890.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1977768-1977884:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1981425-1981501:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1983739-1983812:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1991306-1991454:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1996638-1996765:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1997549-1997644:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1998783-1998944:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1999559-1999785:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2003110-2003180:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:2003978-2004206:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:2005928-2006128:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:2014167-2014309:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:2042928-2043106:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:2044924-2045002:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:2048703-2048782:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:2053065-2053188:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:2058048-2058243:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:2058566-2058738:1:exon

USP25
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 61853
gene: USP25
product: ubiquitin specific peptidase 25, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 145 ESTs, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XM_030806031.1
SIO_010081: USP25
subclass of: SO_0000673
so part of: USP25
location: join(1994906..1995023,1996638..1996765,1997549..1997644,1998783..1998944,1999559..1999785,2003110..2003180,2003978..2004206,2005928..2006128,2014167..2014309,2042928..2043106,2044924..2045002,2048703..2048782,2053065..2053188,2058048..2058243,2058566..2060310)
location: region:1994906-2060310:1
so has part: feature:1994906-1995023:1:exon
so has part: feature:1996638-1996765:1:exon
so has part: feature:1997549-1997644:1:exon
so has part: feature:1998783-1998944:1:exon
so has part: feature:1999559-1999785:1:exon
so has part: feature:2003110-2003180:1:exon
so has part: feature:2003978-2004206:1:exon
so has part: feature:2005928-2006128:1:exon
so has part: feature:2014167-2014309:1:exon
so has part: feature:2042928-2043106:1:exon
so has part: feature:2044924-2045002:1:exon
so has part: feature:2048703-2048782:1:exon
so has part: feature:2053065-2053188:1:exon
so has part: feature:2058048-2058243:1:exon
so has part: feature:2058566-2060310:1:exon

position:1994906:1
position: 1994906
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1994906-1995023:1:exon

position:1995023:1
position: 1995023
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1996638-1996765:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1997549-1997644:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1998783-1998944:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1999559-1999785:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2003110-2003180:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2003978-2004206:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2005928-2006128:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2014167-2014309:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:2042928-2043106:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:2044924-2045002:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:2048703-2048782:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:2053065-2053188:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:2058048-2058243:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:2058566-2060310:1:exon

USP25
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61853
gene: USP25
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ubiquitin carboxyl-terminal hydrolase 25 isoform X3
translation: MHRNREITRIKREEIKRLKDYLTVLQQRLERYLSYGSGPKRFPLVDVLQYALEFASSKPVCTSPVDDIDASSPPSGSIPSQTLPSTTEQQGAPSSELPSTSPSSVAAISSRSVIHKPFTQSRIPPDLPMHPAPRHITEEELSVLESCLHRWRTEIENDTRDLQESISRIHRTIELMYSDKSMIQVPYRLHAVLVHEGQANAGHYWAYIFDHRESRWMKYNDIAVTKSSWEELVRDSFGGYRNASAYCLMYINDKAQFLIQEEFNKETGQPLVGIETLPPDLRDFVEEDNQRFEKELEEWDAQLAQKALQEKLLASQKLRESETSVTTAQAAGDPEYLEQPSRSDFSKHLKEETIRIITKASHEHEDKSPETVLQSAIKLEYARLVKLAQEDTPPETDYRLHHVVVYFIQNQAPKKIIEKTLLEQFGDRNLSFDERCHNIMKVAQAKLEMIKPEEVNLEQYEEWHQDYRKFRETTMYLIIGLENFQRESYIDSLLFLICAYQNNKELLSKGLYRGHDEELISHYRRECLLKLNEQAAELFESGEDREVNNGLIIMNEFIVPFLPLLLVDEMEEKDILAVEDMRNRWCSYLGQEMEPHLQEKLTDFLPKLLDCSMEIKSFHEPPKLPSYSTHELCERFARIMLSLSRTPADGR
SIO_010081: USP25
subclass of: SO_0000673
so part of: USP25
location: join(1997553..1997644,1998783..1998944,1999559..1999785,2003110..2003180,2003978..2004206,2005928..2006128,2014167..2014309,2042928..2043106,2044924..2045002,2048703..2048782,2053065..2053188,2058048..2058243,2058566..2058738)
location: region:1997553-2058738:1
so has part: feature:1997553-1997644:1:exon
so has part: feature:1998783-1998944:1:exon
so has part: feature:1999559-1999785:1:exon
so has part: feature:2003110-2003180:1:exon
so has part: feature:2003978-2004206:1:exon
so has part: feature:2005928-2006128:1:exon
so has part: feature:2014167-2014309:1:exon
so has part: feature:2042928-2043106:1:exon
so has part: feature:2044924-2045002:1:exon
so has part: feature:2048703-2048782:1:exon
so has part: feature:2053065-2053188:1:exon
so has part: feature:2058048-2058243:1:exon
so has part: feature:2058566-2058738:1:exon

XP_030661891.1
type: Protein
SIO_000068: ncbiprotein

position:1997553:1
position: 1997553
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1997553-1997644:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1998783-1998944:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1999559-1999785:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2003110-2003180:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2003978-2004206:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2005928-2006128:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2014167-2014309:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2042928-2043106:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2044924-2045002:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:2048703-2048782:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:2053065-2053188:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:2058048-2058243:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:2058566-2058738:1:exon

LOC115833188
type: Gene
subclass of: SO_0000704
RO_0002162: 61853
gene: LOC115833188
note: Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: complement(2201450..2201551)
location: region:2201450-2201551:-1
so has part: feature:2201450-2201551:-1:exon
subclass of: SO_0000623

115833188
type: Gene
SIO_000068: ncbigene

position:2201450:-1
position: 2201450
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2201551:-1
position: 2201551
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2201450-2201551:-1:exon

LOC115833188
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 61853
nc RNA class: snRNA
gene: LOC115833188
product: U6 spliceosomal RNA
inference: COORDINATES: nucleotide motif:Rfam:12.0:RF00026
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_004028633.1
SIO_010081: LOC115833188
subclass of: SO_0000673
so part of: LOC115833188
location: complement(2201450..2201551)
location: region:2201450-2201551:-1
so has part: feature:2201450-2201551:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2201450-2201551:-1:exon

LOC115833152
type: Gene
subclass of: SO_0000704
RO_0002162: 61853
gene: LOC115833152
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(2249203..2260645)
location: region:2249203-2260645:-1
so has part: feature:2249203-2260645:-1:exon
subclass of: SO_0000011

115833152
type: Gene
SIO_000068: ncbigene

position:2249203:-1
position: 2249203
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2260645:-1
position: 2260645
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2249203-2260645:-1:exon

LOC115833152
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 61853
nc RNA class: lncRNA
gene: LOC115833152
product: uncharacterized LOC115833152
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XR_004028598.1
SIO_010081: LOC115833152
subclass of: SO_0000673
so part of: LOC115833152
location: complement(join(2249203..2249664,2254666..2254667,2260635..2260645))
location: region:2249203-2260645:-1
so has part: feature:2260635-2260645:-1:exon
so has part: feature:2254666-2254667:-1:exon
so has part: feature:2249203-2249664:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2260635-2260645:-1:exon

position:2260635:-1
position: 2260635
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2254666-2254667:-1:exon

position:2254666:-1
position: 2254666
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2254667:-1
position: 2254667
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2249203-2249664:-1:exon

position:2249664:-1
position: 2249664
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC105738706
type: Gene
subclass of: SO_0000704
RO_0002162: 61853
gene: LOC105738706
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: complement(2262601..2282771)
location: region:2262601-2282771:-1
so has part: feature:2262601-2282771:-1:exon

105738706
type: Gene
SIO_000068: ncbigene

position:2262601:-1
position: 2262601
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2282771:-1
position: 2282771
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2262601-2282771:-1:exon

LOC105738706
type: Exon
subclass of: SO_0000147
RO_0002162: 61853
gene: LOC105738706
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 62% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC105738706
subclass of: SO_0000673
so part of: LOC105738706
location: complement(2262601..2263548)
location: region:2262601-2263548:-1
so has part: feature:2262601-2263548:-1:exon

position:2263548:-1
position: 2263548
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2262601-2263548:-1:exon

LOC105738706
type: Exon
subclass of: SO_0000147
RO_0002162: 61853
gene: LOC105738706
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 62% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC105738706
subclass of: SO_0000673
so part of: LOC105738706
location: complement(2282696..2282771)
location: region:2282696-2282771:-1
so has part: feature:2282696-2282771:-1:exon

position:2282696:-1
position: 2282696
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2282696-2282771:-1:exon

LOC115833191
type: Gene
subclass of: SO_0000704
RO_0002162: 61853
gene: LOC115833191
note: Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: complement(2459745..2459824)
location: region:2459745-2459824:-1
so has part: feature:2459745-2459824:-1:exon
subclass of: SO_0000578

115833191
type: Gene
SIO_000068: ncbigene

position:2459745:-1
position: 2459745
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2459824:-1
position: 2459824
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2459745-2459824:-1:exon

LOC115833191
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 61853
nc RNA class: snoRNA
gene: LOC115833191
product: small nucleolar RNA SNORD74
inference: COORDINATES: nucleotide motif:Rfam:12.0:RF00284
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_004028636.1
SIO_010081: LOC115833191
subclass of: SO_0000673
so part of: LOC115833191
location: complement(2459745..2459824)
location: region:2459745-2459824:-1
so has part: feature:2459745-2459824:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2459745-2459824:-1:exon

LOC101178714
type: Gene
subclass of: SO_0000704
RO_0002162: 61853
gene: LOC101178714
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 2593716..2785667
location: region:2593716-2785667:1
so has part: feature:2593716-2785667:1:exon
subclass of: SO_0000010

101178714
type: Gene
SIO_000068: ncbigene

position:2593716:1
position: 2593716
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2785667:1
position: 2785667
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2593716-2785667:1:exon

LOC101178714
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 61853
gene: LOC101178714
product: uncharacterized LOC101178714, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 16 ESTs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XR_004028595.1
SIO_010081: LOC101178714
so part of: LOC101178714
location: join(2593716..2594320,2661917..2661965,2715261..2715321,2770452..2770566,2783377..2785667)
location: region:2593716-2785667:1
so has part: feature:2593716-2594320:1:exon
so has part: feature:2661917-2661965:1:exon
so has part: feature:2715261-2715321:1:exon
so has part: feature:2770452-2770566:1:exon
so has part: feature:2783377-2785667:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2593716-2594320:1:exon

position:2594320:1
position: 2594320
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2661917-2661965:1:exon

position:2661917:1
position: 2661917
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2661965:1
position: 2661965
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2715261-2715321:1:exon

position:2715261:1
position: 2715261
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2715321:1
position: 2715321
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:2770452-2770566:1:exon

position:2770452:1
position: 2770452
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2770566:1
position: 2770566
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:2783377-2785667:1:exon

position:2783377:1
position: 2783377
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC101178714
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 61853
gene: LOC101178714
product: uncharacterized LOC101178714, transcript variant X6
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XR_004028597.1
SIO_010081: LOC101178714
so part of: LOC101178714
location: join(2593716..2594320,2661917..2661965,2770452..2771838)
location: region:2593716-2771838:1
so has part: feature:2593716-2594320:1:exon
so has part: feature:2661917-2661965:1:exon
so has part: feature:2770452-2771838:1:exon

position:2771838:1
position: 2771838
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2593716-2594320:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2661917-2661965:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2770452-2771838:1:exon

LOC101178714
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 61853
gene: LOC101178714
product: uncharacterized LOC101178714, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 7 ESTs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XR_004028594.1
SIO_010081: LOC101178714
so part of: LOC101178714
location: join(2593716..2594320,2661917..2661965,2715261..2715321,2765449..2767530)
location: region:2593716-2767530:1
so has part: feature:2593716-2594320:1:exon
so has part: feature:2661917-2661965:1:exon
so has part: feature:2715261-2715321:1:exon
so has part: feature:2765449-2767530:1:exon

position:2767530:1
position: 2767530
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2593716-2594320:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2661917-2661965:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2715261-2715321:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2765449-2767530:1:exon

position:2765449:1
position: 2765449
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC101178714
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 61853
gene: LOC101178714
product: uncharacterized LOC101178714, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 10 ESTs, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XR_004028596.1
SIO_010081: LOC101178714
so part of: LOC101178714
location: join(2711890..2713585,2715261..2715321,2765449..2767530)
location: region:2711890-2767530:1
so has part: feature:2711890-2713585:1:exon
so has part: feature:2715261-2715321:1:exon
so has part: feature:2765449-2767530:1:exon

position:2711890:1
position: 2711890
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2711890-2713585:1:exon

position:2713585:1
position: 2713585
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2715261-2715321:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2765449-2767530:1:exon

LOC101178714
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 61853
gene: LOC101178714
product: uncharacterized LOC101178714, transcript variant X5
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 14 ESTs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XR_180256.3
SIO_010081: LOC101178714
so part of: LOC101178714
location: join(2762606..2764847,2765449..2765636,2770452..2770566,2783377..2785667)
location: region:2762606-2785667:1
so has part: feature:2762606-2764847:1:exon
so has part: feature:2765449-2765636:1:exon
so has part: feature:2770452-2770566:1:exon
so has part: feature:2783377-2785667:1:exon

position:2762606:1
position: 2762606
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2762606-2764847:1:exon

position:2764847:1
position: 2764847
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2765449-2765636:1:exon

position:2765636:1
position: 2765636
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2770452-2770566:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2783377-2785667:1:exon

LOC101178714
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 61853
gene: LOC101178714
product: uncharacterized LOC101178714, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 4 ESTs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XM_030806262.1
SIO_010081: LOC101178714
subclass of: SO_0000673
so part of: LOC101178714
location: join(2762606..2764847,2765449..2767530)
location: region:2762606-2767530:1
so has part: feature:2762606-2764847:1:exon
so has part: feature:2765449-2767530:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2762606-2764847:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2765449-2767530:1:exon

LOC101178714
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61853
gene: LOC101178714
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: uncharacterized protein LOC101178714
translation: MQMLQSSRSGRGWMLDCELMLMMSAVKIPAAATPCSQKRSESASDALPRLSLCVCMPVCARVLARASVSSRGEGVACECVEGKSQSVSEKQRSTTSEEPDSTSVARTFILWLVRLFYPAFYATKPWIIPKVQILFSNHKQG
SIO_010081: LOC101178714
subclass of: SO_0000673
so part of: LOC101178714
location: join(2764573..2764847,2765449..2765599)
location: region:2764573-2765599:1
so has part: feature:2764573-2764847:1:exon
so has part: feature:2765449-2765599:1:exon

XP_030662122.1
type: Protein
SIO_000068: ncbiprotein

position:2764573:1
position: 2764573
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2765599:1
position: 2765599
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2764573-2764847:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2765449-2765599:1:exon

LOC115833195
type: Gene
subclass of: SO_0000704
RO_0002162: 61853
gene: LOC115833195
note: Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: 2896237..2896396
location: region:2896237-2896396:1
so has part: feature:2896237-2896396:1:exon
subclass of: SO_0000623

115833195
type: Gene
SIO_000068: ncbigene

position:2896237:1
position: 2896237
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2896396:1
position: 2896396
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2896237-2896396:1:exon

LOC115833195
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 61853
nc RNA class: snRNA
gene: LOC115833195
product: U1 spliceosomal RNA
inference: COORDINATES: nucleotide motif:Rfam:12.0:RF00003
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_004028640.1
SIO_010081: LOC115833195
subclass of: SO_0000673
so part of: LOC115833195
location: 2896237..2896396
location: region:2896237-2896396:1
so has part: feature:2896237-2896396:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2896237-2896396:1:exon

LOC115833182
type: Gene
subclass of: SO_0000704
RO_0002162: 61853
gene: LOC115833182
note: Derived by automated computational analysis using gene prediction method: cmsearch.
pseudo: true
so part of: sequence
location: 3608822..3608920
location: region:3608822-3608920:1
so has part: feature:3608822-3608920:1:exon

115833182
type: Gene
SIO_000068: ncbigene

position:3608822:1
position: 3608822
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3608920:1
position: 3608920
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3608822-3608920:1:exon

LOC115833182
type: Exon
subclass of: SO_0000147
RO_0002162: 61853
gene: LOC115833182
inference: COORDINATES: nucleotide motif:Rfam:12.0:RF00026
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
pseudo: true
SIO_010081: LOC115833182
subclass of: SO_0000673
so part of: LOC115833182
location: 3608822..3608920
location: region:3608822-3608920:1
so has part: feature:3608822-3608920:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3608822-3608920:1:exon

LOC115833189
type: Gene
subclass of: SO_0000704
RO_0002162: 61853
gene: LOC115833189
note: Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: 3629951..3630011
location: region:3629951-3630011:1
so has part: feature:3629951-3630011:1:exon
subclass of: SO_0000623

115833189
type: Gene
SIO_000068: ncbigene

position:3629951:1
position: 3629951
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3630011:1
position: 3630011
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3629951-3630011:1:exon

LOC115833189
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 61853
nc RNA class: snRNA
gene: LOC115833189
product: U7 small nuclear RNA
inference: COORDINATES: nucleotide motif:Rfam:12.0:RF00066
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_004028634.1
SIO_010081: LOC115833189
subclass of: SO_0000673
so part of: LOC115833189
location: 3629951..3630011
location: region:3629951-3630011:1
so has part: feature:3629951-3630011:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3629951-3630011:1:exon

TRNAG-GCC
type: Gene
subclass of: SO_0000704
RO_0002162: 61853
gene: TRNAG-GCC
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: complement(3632054..3632124)
location: region:3632054-3632124:-1
so has part: feature:3632054-3632124:-1:exon
subclass of: SO_0000663

115833205
type: Gene
SIO_000068: ncbigene

position:3632054:-1
position: 3632054
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3632124:-1
position: 3632124
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3632054-3632124:-1:exon

TRNAG-GCC
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 61853
gene: TRNAG-GCC
product: tRNA-Gly
inference: COORDINATES: profile:tRNAscan-SE:1.23
note: transfer RNA glycine (anticodon GCC); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:complement(3632090..3632092),aa:Gly, seq:gcc)
SIO_010081: TRNAG-GCC
subclass of: SO_0000673
so part of: TRNAG-GCC
location: complement(3632054..3632124)
location: region:3632054-3632124:-1
so has part: feature:3632054-3632124:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3632054-3632124:-1:exon

CXADR
type: Gene
subclass of: SO_0000704
RO_0002162: 61853
gene: CXADR
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 3677333..3755535
location: region:3677333-3755535:1
so has part: feature:3677333-3755535:1:exon
subclass of: SO_0000010

100579927
type: Gene
SIO_000068: ncbigene

position:3677333:1
position: 3677333
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3755535:1
position: 3755535
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3677333-3755535:1:exon

CXADR
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 61853
gene: CXADR
product: CXADR Ig-like cell adhesion molecule, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 80 ESTs, 2 Proteins, and 65% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_003263786.4
SIO_010081: CXADR
subclass of: SO_0000673
so part of: CXADR
location: join(3677333..3677593,3712539..3712705,3717265..3717469,3724506..3724661,3726231..3726353,3726873..3727011,3731002..3731185,3755106..3755535)
location: region:3677333-3755535:1
so has part: feature:3677333-3677593:1:exon
so has part: feature:3712539-3712705:1:exon
so has part: feature:3717265-3717469:1:exon
so has part: feature:3724506-3724661:1:exon
so has part: feature:3726231-3726353:1:exon
so has part: feature:3726873-3727011:1:exon
so has part: feature:3731002-3731185:1:exon
so has part: feature:3755106-3755535:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3677333-3677593:1:exon

position:3677593:1
position: 3677593
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3712539-3712705:1:exon

position:3712539:1
position: 3712539
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3712705:1
position: 3712705
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:3717265-3717469:1:exon

position:3717265:1
position: 3717265
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3717469:1
position: 3717469
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:3724506-3724661:1:exon

position:3724506:1
position: 3724506
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3724661:1
position: 3724661
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:3726231-3726353:1:exon

position:3726231:1
position: 3726231
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3726353:1
position: 3726353
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:3726873-3727011:1:exon

position:3726873:1
position: 3726873
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3727011:1
position: 3727011
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:3731002-3731185:1:exon

position:3731002:1
position: 3731002
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3731185:1
position: 3731185
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:3755106-3755535:1:exon

position:3755106:1
position: 3755106
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

CXADR
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 61853
gene: CXADR
product: CXADR Ig-like cell adhesion molecule, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 mRNAs, 124 ESTs, 4 Proteins, and 90% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XM_012501902.2
SIO_010081: CXADR
subclass of: SO_0000673
so part of: CXADR
location: join(3677333..3677593,3712539..3712705,3717265..3717469,3724506..3724661,3726231..3726353,3726873..3727011,3731002..3733339)
location: region:3677333-3733339:1
so has part: feature:3677333-3677593:1:exon
so has part: feature:3712539-3712705:1:exon
so has part: feature:3717265-3717469:1:exon
so has part: feature:3724506-3724661:1:exon
so has part: feature:3726231-3726353:1:exon
so has part: feature:3726873-3727011:1:exon
so has part: feature:3731002-3733339:1:exon

position:3733339:1
position: 3733339
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3677333-3677593:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3712539-3712705:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3717265-3717469:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3724506-3724661:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3726231-3726353:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3726873-3727011:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3731002-3733339:1:exon

CXADR
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61853
gene: CXADR
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: coxsackievirus and adenovirus receptor isoform X2
translation: MAFLLRFVLLYGVVDFARSLSITTPEEMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVVLVKPSGARCYVDGSEEIGSDFKLKCEPKEGSLPLQYEWQKLSDSQKMPTSWLAEMTSSVISVKNASSEYSGTYSCTVRNRVGSDQCLLRLNVVPPSNKAGLIAGAIIGTLLALALIGLIIFCCRKKRREEKYEKEVHHDIREDVPPPKSRTSTARSYIGSNHSSLGSMSPSNMEGYSKTQYNQVPSEDFERTPQSPTLPPAKFKYPNKTDGITVV
SIO_010081: CXADR
subclass of: SO_0000673
so part of: CXADR
location: join(3677551..3677593,3712539..3712705,3717265..3717469,3724506..3724661,3726231..3726353,3726873..3727011,3731002..3731185,3755106..3755147)
location: region:3677551-3755147:1
so has part: feature:3677551-3677593:1:exon
so has part: feature:3712539-3712705:1:exon
so has part: feature:3717265-3717469:1:exon
so has part: feature:3724506-3724661:1:exon
so has part: feature:3726231-3726353:1:exon
so has part: feature:3726873-3727011:1:exon
so has part: feature:3731002-3731185:1:exon
so has part: feature:3755106-3755147:1:exon

XP_003263834.2
type: Protein
SIO_000068: ncbiprotein

position:3677551:1
position: 3677551
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3755147:1
position: 3755147
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3677551-3677593:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3712539-3712705:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3717265-3717469:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3724506-3724661:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3726231-3726353:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3726873-3727011:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3731002-3731185:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3755106-3755147:1:exon

CXADR
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61853
gene: CXADR
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: coxsackievirus and adenovirus receptor isoform X1
translation: MAFLLRFVLLYGVVDFARSLSITTPEEMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVVLVKPSGARCYVDGSEEIGSDFKLKCEPKEGSLPLQYEWQKLSDSQKMPTSWLAEMTSSVISVKNASSEYSGTYSCTVRNRVGSDQCLLRLNVVPPSNKAGLIAGAIIGTLLALALIGLIIFCCRKKRREEKYEKEVHHDIREDVPPPKSRTSTARSYIGSNHSSLGSMSPSNMEGYSKTQYNQVPSEDFERTPQSPTLPPAKVAAPNLSRMGAIPVMIPAQSKDGSIV
SIO_010081: CXADR
subclass of: SO_0000673
so part of: CXADR
location: join(3677551..3677593,3712539..3712705,3717265..3717469,3724506..3724661,3726231..3726353,3726873..3727011,3731002..3731266)
location: region:3677551-3731266:1
so has part: feature:3677551-3677593:1:exon
so has part: feature:3712539-3712705:1:exon
so has part: feature:3717265-3717469:1:exon
so has part: feature:3724506-3724661:1:exon
so has part: feature:3726231-3726353:1:exon
so has part: feature:3726873-3727011:1:exon
so has part: feature:3731002-3731266:1:exon

XP_012357356.1
type: Protein
SIO_000068: ncbiprotein

position:3731266:1
position: 3731266
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3677551-3677593:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3712539-3712705:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3717265-3717469:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3724506-3724661:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3726231-3726353:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3726873-3727011:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3731002-3731266:1:exon

LOC101178907
type: Gene
subclass of: SO_0000704
RO_0002162: 61853
gene: LOC101178907
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: complement(3682917..3683591)
location: region:3682917-3683591:-1
so has part: feature:3682917-3683591:-1:exon

101178907
type: Gene
SIO_000068: ncbigene

position:3682917:-1
position: 3682917
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3683591:-1
position: 3683591
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3682917-3683591:-1:exon

LOC101178907
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 61853
gene: LOC101178907
product: transcription factor BTF3 homolog 4 pseudogene
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 ESTs, 15 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
transcript id: XR_004028586.1
SIO_010081: LOC101178907
so part of: LOC101178907
location: complement(3682917..3683591)
location: region:3682917-3683591:-1
so has part: feature:3682917-3683591:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3682917-3683591:-1:exon

BTG3
type: Gene
subclass of: SO_0000704
RO_0002162: 61853
gene: BTG3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(3755613..3775992)
location: region:3755613-3775992:-1
so has part: feature:3755613-3775992:-1:exon
subclass of: SO_0000010

100580263
type: Gene
SIO_000068: ncbigene

position:3755613:-1
position: 3755613
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3775992:-1
position: 3775992
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3755613-3775992:-1:exon

BTG3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 61853
gene: BTG3
product: BTG anti-proliferation factor 3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 mRNAs, 259 ESTs, 7 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XM_030806182.1
SIO_010081: BTG3
subclass of: SO_0000673
so part of: BTG3
location: complement(join(3755613..3756294,3760884..3761091,3767403..3767540,3771892..3772072,3775746..3775992))
location: region:3755613-3775992:-1
so has part: feature:3775746-3775992:-1:exon
so has part: feature:3771892-3772072:-1:exon
so has part: feature:3767403-3767540:-1:exon
so has part: feature:3760884-3761091:-1:exon
so has part: feature:3755613-3756294:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3775746-3775992:-1:exon

position:3775746:-1
position: 3775746
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3771892-3772072:-1:exon

position:3771892:-1
position: 3771892
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3772072:-1
position: 3772072
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:3767403-3767540:-1:exon

position:3767403:-1
position: 3767403
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3767540:-1
position: 3767540
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:3760884-3761091:-1:exon

position:3760884:-1
position: 3760884
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3761091:-1
position: 3761091
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:3755613-3756294:-1:exon

position:3756294:-1
position: 3756294
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

BTG3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61853
gene: BTG3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: protein BTG3
translation: MKNEIAAVVFFFTRLVRKHDKLKKEAVERFAEKLTLILQEKYKNHWYPEKPSKGQAYRCIRVNKFQRVDPDVLKACENSCILYSDLGLPKELTLWVDPCEVCCRYGEKNNAFIVASFENEDENKDEISRKVTRALDKVTSDYHSGSSSSDEETSKEMEVKPNSVTAAASPVYQISELIFPPLPMWHPLPRKKPGMYRGNGHQNHYPPPVPFGYPNQGRKNKPYRPIPVTWVPPPGMHCDRNHWINPHMLAPH
SIO_010081: BTG3
subclass of: SO_0000673
so part of: BTG3
location: complement(join(3756055..3756294,3760884..3761091,3767403..3767540,3771892..3772064))
location: region:3756055-3772064:-1
so has part: feature:3771892-3772064:-1:exon
so has part: feature:3767403-3767540:-1:exon
so has part: feature:3760884-3761091:-1:exon
so has part: feature:3756055-3756294:-1:exon

XP_030662042.1
type: Protein
SIO_000068: ncbiprotein

position:3756055:-1
position: 3756055
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3772064:-1
position: 3772064
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3771892-3772064:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3767403-3767540:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3760884-3761091:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3756055-3756294:-1:exon

LOC115833143
type: Gene
subclass of: SO_0000704
RO_0002162: 61853
gene: LOC115833143
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 3774721..3777170
location: region:3774721-3777170:1
so has part: feature:3774721-3777170:1:exon
subclass of: SO_0000010

115833143
type: Gene
SIO_000068: ncbigene

position:3774721:1
position: 3774721
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3777170:1
position: 3777170
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3774721-3777170:1:exon

LOC115833143
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 61853
gene: LOC115833143
product: uncharacterized LOC115833143
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, and 13% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_030806183.1
SIO_010081: LOC115833143
subclass of: SO_0000673
so part of: LOC115833143
location: 3774721..3777170
location: region:3774721-3777170:1
so has part: feature:3774721-3777170:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3774721-3777170:1:exon

LOC115833143
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61853
gene: LOC115833143
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: uncharacterized protein LOC115833143
translation: MTRERVGAARDLLARLRGGAGGGASPRGRPRTPGLAAREATHPRPVLSLAQTRDCDRAVRRTAGFPPRQKAALRACGTPARPRYVRQCLRGSRGLGPFGYLGLFVSPSDLSTLHLTPSGRDGEF
SIO_010081: LOC115833143
subclass of: SO_0000673
so part of: LOC115833143
location: 3776006..3776380
location: region:3776006-3776380:1
so has part: feature:3776006-3776380:1:exon

XP_030662043.1
type: Protein
SIO_000068: ncbiprotein

position:3776006:1
position: 3776006
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3776380:1
position: 3776380
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3776006-3776380:1:exon

C25H21orf91
type: Gene
subclass of: SO_0000704
RO_0002162: 61853
gene: C25H21orf91
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(3949110..3975623)
location: region:3949110-3975623:-1
so has part: feature:3949110-3975623:-1:exon
subclass of: SO_0000010

100581478
type: Gene
SIO_000068: ncbigene

position:3949110:-1
position: 3949110
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3975623:-1
position: 3975623
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3949110-3975623:-1:exon

C25H21orf91
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 61853
gene: C25H21orf91
product: chromosome 25 C21orf91 homolog
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 30 ESTs, 7 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XM_003263790.4
SIO_010081: C25H21orf91
subclass of: SO_0000673
so part of: C25H21orf91
location: complement(join(3949110..3949397,3951038..3951100,3952413..3952949,3974477..3974610,3975573..3975623))
location: region:3949110-3975623:-1
so has part: feature:3975573-3975623:-1:exon
so has part: feature:3974477-3974610:-1:exon
so has part: feature:3952413-3952949:-1:exon
so has part: feature:3951038-3951100:-1:exon
so has part: feature:3949110-3949397:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3975573-3975623:-1:exon

position:3975573:-1
position: 3975573
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3974477-3974610:-1:exon

position:3974477:-1
position: 3974477
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3974610:-1
position: 3974610
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:3952413-3952949:-1:exon

position:3952413:-1
position: 3952413
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3952949:-1
position: 3952949
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:3951038-3951100:-1:exon

position:3951038:-1
position: 3951038
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3951100:-1
position: 3951100
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:3949110-3949397:-1:exon

position:3949397:-1
position: 3949397
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

C25H21orf91
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61853
gene: C25H21orf91
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: protein EURL homolog
translation: MNEEEQFVNIDLNDDNICSVCKLGTDKETLSFCHICFELNIEGVPKSDLLHTKSLRGHKDCFEKYHLIANQGCPRSKLSKSTYEEVKTILSKKINWIVQYAQNKDLDSDSECSKNPQHHLFNFRHKPEEKLLPQFDSQVPKYSAKWIDGSACGISNCTQRILEQRENTDFGLAMLQDSGATLCHNSVLWPHSHNQAQKKEETISSPEANVQTQYPHYSREELNSMTLGEVEQLNAKLLQQIQEVFEELTHQVQEKDSLASQLHVRHVAIEQLLKNYSKLPCLQVGRTGMKSHLPINN
SIO_010081: C25H21orf91
subclass of: SO_0000673
so part of: C25H21orf91
location: complement(join(3949231..3949397,3951038..3951100,3952413..3952949,3974477..3974603))
location: region:3949231-3974603:-1
so has part: feature:3974477-3974603:-1:exon
so has part: feature:3952413-3952949:-1:exon
so has part: feature:3951038-3951100:-1:exon
so has part: feature:3949231-3949397:-1:exon

XP_003263838.1
type: Protein
SIO_000068: ncbiprotein

position:3949231:-1
position: 3949231
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3974603:-1
position: 3974603
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3974477-3974603:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3952413-3952949:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3951038-3951100:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3949231-3949397:-1:exon

LOC115833165
type: Gene
subclass of: SO_0000704
RO_0002162: 61853
gene: LOC115833165
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: complement(4053444..4053736)
location: region:4053444-4053736:-1
so has part: feature:4053444-4053736:-1:exon

115833165
type: Gene
SIO_000068: ncbigene

position:4053444:-1
position: 4053444
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4053736:-1
position: 4053736
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4053444-4053736:-1:exon

LOC115833165
type: Exon
subclass of: SO_0000147
RO_0002162: 61853
gene: LOC115833165
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins
pseudo: true
SIO_010081: LOC115833165
subclass of: SO_0000673
so part of: LOC115833165
location: complement(4053444..4053736)
location: region:4053444-4053736:-1
so has part: feature:4053444-4053736:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4053444-4053736:-1:exon

CHODL
type: Gene
subclass of: SO_0000704
RO_0002162: 61853
gene: CHODL
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 4415273..4441181
location: region:4415273-4441181:1
so has part: feature:4415273-4441181:1:exon
subclass of: SO_0000010

100582030
type: Gene
SIO_000068: ncbigene

position:4415273:1
position: 4415273
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4441181:1
position: 4441181
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4415273-4441181:1:exon

CHODL
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 61853
gene: CHODL
product: chondrolectin, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 mRNAs, 4 Proteins, and 46% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_003263792.3
SIO_010081: CHODL
subclass of: SO_0000673
so part of: CHODL
location: join(4415273..4415742,4426541..4426850,4427003..4427160,4430240..4430326,4432741..4432843,4439774..4441181)
location: region:4415273-4441181:1
so has part: feature:4415273-4415742:1:exon
so has part: feature:4426541-4426850:1:exon
so has part: feature:4427003-4427160:1:exon
so has part: feature:4430240-4430326:1:exon
so has part: feature:4432741-4432843:1:exon
so has part: feature:4439774-4441181:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4415273-4415742:1:exon

position:4415742:1
position: 4415742
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4426541-4426850:1:exon

position:4426541:1
position: 4426541
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4426850:1
position: 4426850
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:4427003-4427160:1:exon

position:4427003:1
position: 4427003
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4427160:1
position: 4427160
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:4430240-4430326:1:exon

position:4430240:1
position: 4430240
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4430326:1
position: 4430326
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:4432741-4432843:1:exon

position:4432741:1
position: 4432741
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4432843:1
position: 4432843
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:4439774-4441181:1:exon

position:4439774:1
position: 4439774
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

CHODL
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61853
gene: CHODL
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: chondrolectin isoform X1
translation: MSRLVSLLLGAALLCGHGAFCRRVVSGQKVCFADFKHPCYKMAYFHELSSRVSFQEARLACESEGGVLLSLENEAEQKLIESMLQNLTKPGTGISDGDFWIGLWRNGDGQTSGACPDLYQWSDGSSFQYRNWYTDEPSCGSEKCVVMYHQPTANPGLGGPYLYQWNDDRCNMKHNYICKYDPEINPTAPVEKPYLTNQPGDTHQNVVVTEAGIIPNLIYVVIPTIPLLLLILVAFGTCCFQMLHKSKGRTKASPNQSTLWISKSARKESGMEV
SIO_010081: CHODL
subclass of: SO_0000673
so part of: CHODL
location: join(4415664..4415742,4426541..4426850,4427003..4427160,4430240..4430326,4432741..4432843,4439774..4439858)
location: region:4415664-4439858:1
so has part: feature:4415664-4415742:1:exon
so has part: feature:4426541-4426850:1:exon
so has part: feature:4427003-4427160:1:exon
so has part: feature:4430240-4430326:1:exon
so has part: feature:4432741-4432843:1:exon
so has part: feature:4439774-4439858:1:exon

XP_003263840.2
type: Protein
SIO_000068: ncbiprotein

position:4415664:1
position: 4415664
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4439858:1
position: 4439858
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4415664-4415742:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4426541-4426850:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4427003-4427160:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4430240-4430326:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4432741-4432843:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4439774-4439858:1:exon

CHODL
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 61853
gene: CHODL
product: chondrolectin, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 mRNAs, 2 Proteins, and 55% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_003263793.3
SIO_010081: CHODL
subclass of: SO_0000673
so part of: CHODL
location: join(4416322..4416410,4426541..4426850,4427003..4427160,4430240..4430326,4432741..4432843,4439774..4441181)
location: region:4416322-4441181:1
so has part: feature:4416322-4416410:1:exon
so has part: feature:4426541-4426850:1:exon
so has part: feature:4427003-4427160:1:exon
so has part: feature:4430240-4430326:1:exon
so has part: feature:4432741-4432843:1:exon
so has part: feature:4439774-4441181:1:exon

position:4416322:1
position: 4416322
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4416322-4416410:1:exon

position:4416410:1
position: 4416410
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4426541-4426850:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4427003-4427160:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4430240-4430326:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4432741-4432843:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4439774-4441181:1:exon

CHODL
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61853
gene: CHODL
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: chondrolectin isoform X2
translation: MTAGSSHSQKVCFADFKHPCYKMAYFHELSSRVSFQEARLACESEGGVLLSLENEAEQKLIESMLQNLTKPGTGISDGDFWIGLWRNGDGQTSGACPDLYQWSDGSSFQYRNWYTDEPSCGSEKCVVMYHQPTANPGLGGPYLYQWNDDRCNMKHNYICKYDPEINPTAPVEKPYLTNQPGDTHQNVVVTEAGIIPNLIYVVIPTIPLLLLILVAFGTCCFQMLHKSKGRTKASPNQSTLWISKSARKESGMEV
SIO_010081: CHODL
subclass of: SO_0000673
so part of: CHODL
location: join(4416389..4416410,4426541..4426850,4427003..4427160,4430240..4430326,4432741..4432843,4439774..4439858)
location: region:4416389-4439858:1
so has part: feature:4416389-4416410:1:exon
so has part: feature:4426541-4426850:1:exon
so has part: feature:4427003-4427160:1:exon
so has part: feature:4430240-4430326:1:exon
so has part: feature:4432741-4432843:1:exon
so has part: feature:4439774-4439858:1:exon

XP_003263841.2
type: Protein
SIO_000068: ncbiprotein

position:4416389:1
position: 4416389
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4416389-4416410:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4426541-4426850:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4427003-4427160:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4430240-4430326:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4432741-4432843:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4439774-4439858:1:exon

CHODL
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 61853
gene: CHODL
product: chondrolectin, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 84% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_030806163.1
SIO_010081: CHODL
subclass of: SO_0000673
so part of: CHODL
location: join(4426585..4426850,4427003..4427160,4430240..4430326,4439774..4439953)
location: region:4426585-4439953:1
so has part: feature:4426585-4426850:1:exon
so has part: feature:4427003-4427160:1:exon
so has part: feature:4430240-4430326:1:exon
so has part: feature:4439774-4439953:1:exon

position:4426585:1
position: 4426585
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4439953:1
position: 4439953
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4426585-4426850:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4427003-4427160:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4430240-4430326:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4439774-4439953:1:exon

CHODL
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61853
gene: CHODL
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: chondrolectin isoform X3
translation: MAYFHELSSRVSFQEARLACESEGGVLLSLENEAEQKLIESMLQNLTKPGTGISDGDFWIGLWRNGDGQTSGACPDLYQWSDGSSFQYRNWYTDEPSCGSEKCVVMYHQPTANPGLGGPYLYQWNDDRCNMKHNYICKYDPEINPTAPVEKPYLTNQPGDTHQNVVVTEAVKEEQKLVQTSPHCGFQRVPEKKVAWKYNNSLTWFQNFIILDLYKE
SIO_010081: CHODL
subclass of: SO_0000673
so part of: CHODL
location: join(4426585..4426850,4427003..4427160,4430240..4430326,4439774..4439913)
location: region:4426585-4439913:1
so has part: feature:4426585-4426850:1:exon
so has part: feature:4427003-4427160:1:exon
so has part: feature:4430240-4430326:1:exon
so has part: feature:4439774-4439913:1:exon

XP_030662023.1
type: Protein
SIO_000068: ncbiprotein

position:4439913:1
position: 4439913
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4426585-4426850:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4427003-4427160:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4430240-4430326:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4439774-4439913:1:exon

TMPRSS15
type: Gene
subclass of: SO_0000704
RO_0002162: 61853
gene: TMPRSS15
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(4442865..4581625)
location: region:4442865-4581625:-1
so has part: feature:4442865-4581625:-1:exon
subclass of: SO_0000010

100580929
type: Gene
SIO_000068: ncbigene

position:4442865:-1
position: 4442865
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4581625:-1
position: 4581625
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4442865-4581625:-1:exon

TMPRSS15
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 61853
gene: TMPRSS15
product: transmembrane serine protease 15
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 mRNAs, 4 Proteins, and 2% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_030806191.1
SIO_010081: TMPRSS15
subclass of: SO_0000673
so part of: TMPRSS15
location: complement(join(4442865..4443874,4448935..4449074,4452676..4452771,4461041..4461222,4473956..4474130,4474290..4474339,4477441..4477536,4493107..4493239,4495294..4495404,4505577..4505717,4508931..4509056,4511847..4511936,4521551..4521686,4523615..4523765,4524065..4524170,4533038..4533187,4533858..4533998,4539873..4539979,4545237..4545345,4552279..4552410,4559079..4559114,4563269..4563420,4577367..4577434,4577691..4577821,4581318..4581625))
location: region:4442865-4581625:-1
so has part: feature:4581318-4581625:-1:exon
so has part: feature:4577691-4577821:-1:exon
so has part: feature:4577367-4577434:-1:exon
so has part: feature:4563269-4563420:-1:exon
so has part: feature:4559079-4559114:-1:exon
so has part: feature:4552279-4552410:-1:exon
so has part: feature:4545237-4545345:-1:exon
so has part: feature:4539873-4539979:-1:exon
so has part: feature:4533858-4533998:-1:exon
so has part: feature:4533038-4533187:-1:exon
so has part: feature:4524065-4524170:-1:exon
so has part: feature:4523615-4523765:-1:exon
so has part: feature:4521551-4521686:-1:exon
so has part: feature:4511847-4511936:-1:exon
so has part: feature:4508931-4509056:-1:exon
so has part: feature:4505577-4505717:-1:exon
so has part: feature:4495294-4495404:-1:exon
so has part: feature:4493107-4493239:-1:exon
so has part: feature:4477441-4477536:-1:exon
so has part: feature:4474290-4474339:-1:exon
so has part: feature:4473956-4474130:-1:exon
so has part: feature:4461041-4461222:-1:exon
so has part: feature:4452676-4452771:-1:exon
so has part: feature:4448935-4449074:-1:exon
so has part: feature:4442865-4443874:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4581318-4581625:-1:exon

position:4581318:-1
position: 4581318
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4577691-4577821:-1:exon

position:4577691:-1
position: 4577691
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4577821:-1
position: 4577821
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:4577367-4577434:-1:exon

position:4577367:-1
position: 4577367
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4577434:-1
position: 4577434
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:4563269-4563420:-1:exon

position:4563269:-1
position: 4563269
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4563420:-1
position: 4563420
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:4559079-4559114:-1:exon

position:4559079:-1
position: 4559079
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4559114:-1
position: 4559114
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:4552279-4552410:-1:exon

position:4552279:-1
position: 4552279
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4552410:-1
position: 4552410
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:4545237-4545345:-1:exon

position:4545237:-1
position: 4545237
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4545345:-1
position: 4545345
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:4539873-4539979:-1:exon

position:4539873:-1
position: 4539873
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4539979:-1
position: 4539979
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:4533858-4533998:-1:exon

position:4533858:-1
position: 4533858
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4533998:-1
position: 4533998
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:4533038-4533187:-1:exon

position:4533038:-1
position: 4533038
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4533187:-1
position: 4533187
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:4524065-4524170:-1:exon

position:4524065:-1
position: 4524065
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4524170:-1
position: 4524170
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:4523615-4523765:-1:exon

position:4523615:-1
position: 4523615
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4523765:-1
position: 4523765
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:4521551-4521686:-1:exon

position:4521551:-1
position: 4521551
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4521686:-1
position: 4521686
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:4511847-4511936:-1:exon

position:4511847:-1
position: 4511847
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4511936:-1
position: 4511936
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:4508931-4509056:-1:exon

position:4508931:-1
position: 4508931
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4509056:-1
position: 4509056
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:4505577-4505717:-1:exon

position:4505577:-1
position: 4505577
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4505717:-1
position: 4505717
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:4495294-4495404:-1:exon

position:4495294:-1
position: 4495294
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4495404:-1
position: 4495404
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:4493107-4493239:-1:exon

position:4493107:-1
position: 4493107
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4493239:-1
position: 4493239
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:4477441-4477536:-1:exon

position:4477441:-1
position: 4477441
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4477536:-1
position: 4477536
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:4474290-4474339:-1:exon

position:4474290:-1
position: 4474290
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4474339:-1
position: 4474339
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:4473956-4474130:-1:exon

position:4473956:-1
position: 4473956
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4474130:-1
position: 4474130
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 22
SIO_000628: feature:4461041-4461222:-1:exon

position:4461041:-1
position: 4461041
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4461222:-1
position: 4461222
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 23
SIO_000628: feature:4452676-4452771:-1:exon

position:4452676:-1
position: 4452676
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4452771:-1
position: 4452771
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 24
SIO_000628: feature:4448935-4449074:-1:exon

position:4448935:-1
position: 4448935
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4449074:-1
position: 4449074
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 25
SIO_000628: feature:4442865-4443874:-1:exon

position:4443874:-1
position: 4443874
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

TMPRSS15
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61853
gene: TMPRSS15
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: enteropeptidase
translation: MGSKRSVSSRHHSLSSYEIMFAALFAILVVLCAGLIAVSWLTIKESQRGAALGQSHEARGTFKITSGVTYNPNLQDKLSVDFKVLAFDLQQMIDEIFLSSNLKNEYKNSRVLQFENGSIIVIFDLFFAQWVSDENVKEELIQGIEANKSSQLVTFHIDLNSVDILDKLTTTSHLAAPGNVSIECLPGSSPCTDALTCIKADLFCDGEVNCPDGSDEDNKMCATVCDGRFLLTGSSGSFQATHYPKPSETSVVCQWIIRVNQGLSIKLSFDHFNTYYTDILDIYEGVGSSKILRASIWETNPGTIRIFSNQVTATFLVESEESDYVGFNATYTAFNSSELNNYEKINCNFEDGFCFWVQDLNDDNEWERIQGSTFPPFTGPNFDHTFGNASGFYISTPTGPGGRQERVGLLSLPLDPTSEPACLSFWYHMYGENVHKLSINISNDQNMEKTVFQKEGNYGDNWNYGQVTLNETVKFKVAFNAFKKKILSDIALDDISLTYGICNGSLYPEPTLVPTPPPELPTDCGGPFELWEPNTTFSSMNFPNSYPNLAFCVWILNAQKGENIQLHFQEFDLENINDVVEIRDGEEADSLLLAVYTGPGPVKDVFSTTNRMTVLLITNDVLARGGFKANFTTGYHLGIPEPCKEDNFQCKNGECVPLVNLCDGHLHCEDGSDEADCVRFFNGTMNNNGLVQFRIQSMWHTACAENWTIQISNDVCQLLGLGSGNSSMPIFSTDGGPFVKLNTAPDGHLILTPSQQCLQDSLIRLQCNHKSCGKKLVAQDITPKIVGGSNAKEGAWPWLVGLYYGGRLLCGASLVSSDWLVSAAHCVYGRNLEPSKWTAILGLHMTSNLTSPQTVSRLIDQIVINPHYNRRRKDNDITMMHLEFKVNYTDYIQPICLPEENQVFPPGRNCSIAGWGTVVYQGTTANILQEADVPLLSNEKCQQQMPEYNITENMICAGYEEGGIDSCQGDSGGPLMCQENNRWFLAGVTSFGYKCALPNRPGVYARVSRFTEWIQSFLH
SIO_010081: TMPRSS15
subclass of: SO_0000673
so part of: TMPRSS15
location: complement(join(4443719..4443874,4448935..4449074,4452676..4452771,4461041..4461222,4473956..4474130,4474290..4474339,4477441..4477536,4493107..4493239,4495294..4495404,4505577..4505717,4508931..4509056,4511847..4511936,4521551..4521686,4523615..4523765,4524065..4524170,4533038..4533187,4533858..4533998,4539873..4539979,4545237..4545345,4552279..4552410,4559079..4559114,4563269..4563420,4577367..4577434,4577691..4577821,4581318..4581462))
location: region:4443719-4581462:-1
so has part: feature:4581318-4581462:-1:exon
so has part: feature:4577691-4577821:-1:exon
so has part: feature:4577367-4577434:-1:exon
so has part: feature:4563269-4563420:-1:exon
so has part: feature:4559079-4559114:-1:exon
so has part: feature:4552279-4552410:-1:exon
so has part: feature:4545237-4545345:-1:exon
so has part: feature:4539873-4539979:-1:exon
so has part: feature:4533858-4533998:-1:exon
so has part: feature:4533038-4533187:-1:exon
so has part: feature:4524065-4524170:-1:exon
so has part: feature:4523615-4523765:-1:exon
so has part: feature:4521551-4521686:-1:exon
so has part: feature:4511847-4511936:-1:exon
so has part: feature:4508931-4509056:-1:exon
so has part: feature:4505577-4505717:-1:exon
so has part: feature:4495294-4495404:-1:exon
so has part: feature:4493107-4493239:-1:exon
so has part: feature:4477441-4477536:-1:exon
so has part: feature:4474290-4474339:-1:exon
so has part: feature:4473956-4474130:-1:exon
so has part: feature:4461041-4461222:-1:exon
so has part: feature:4452676-4452771:-1:exon
so has part: feature:4448935-4449074:-1:exon
so has part: feature:4443719-4443874:-1:exon

XP_030662051.1
type: Protein
SIO_000068: ncbiprotein

position:4443719:-1
position: 4443719
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4581462:-1
position: 4581462
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4581318-4581462:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4577691-4577821:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4577367-4577434:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4563269-4563420:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4559079-4559114:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4552279-4552410:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4545237-4545345:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4539873-4539979:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:4533858-4533998:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:4533038-4533187:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:4524065-4524170:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:4523615-4523765:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:4521551-4521686:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:4511847-4511936:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:4508931-4509056:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:4505577-4505717:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:4495294-4495404:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:4493107-4493239:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:4477441-4477536:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:4474290-4474339:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:4473956-4474130:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:4461041-4461222:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:4452676-4452771:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:4448935-4449074:-1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:4443719-4443874:-1:exon

LOC115833166
type: Gene
subclass of: SO_0000704
RO_0002162: 61853
gene: LOC115833166
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 5269120..5278170
location: region:5269120-5278170:1
so has part: feature:5269120-5278170:1:exon
subclass of: SO_0000011

115833166
type: Gene
SIO_000068: ncbigene

position:5269120:1
position: 5269120
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5278170:1
position: 5278170
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5269120-5278170:1:exon

LOC115833166
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 61853
nc RNA class: lncRNA
gene: LOC115833166
product: uncharacterized LOC115833166
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XR_004028615.1
SIO_010081: LOC115833166
subclass of: SO_0000673
so part of: LOC115833166
location: join(5269120..5269148,5272639..5272641,5278091..5278170)
location: region:5269120-5278170:1
so has part: feature:5269120-5269148:1:exon
so has part: feature:5272639-5272641:1:exon
so has part: feature:5278091-5278170:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5269120-5269148:1:exon

position:5269148:1
position: 5269148
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:5272639-5272641:1:exon

position:5272639:1
position: 5272639
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5272641:1
position: 5272641
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:5278091-5278170:1:exon

position:5278091:1
position: 5278091
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC100583482
type: Gene
subclass of: SO_0000704
RO_0002162: 61853
gene: LOC100583482
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 5401272..5401857
location: region:5401272-5401857:1
so has part: feature:5401272-5401857:1:exon

100583482
type: Gene
SIO_000068: ncbigene

position:5401272:1
position: 5401272
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5401857:1
position: 5401857
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5401272-5401857:1:exon

LOC100583482
type: Exon
subclass of: SO_0000147
RO_0002162: 61853
gene: LOC100583482
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
pseudo: true
SIO_010081: LOC100583482
subclass of: SO_0000673
so part of: LOC100583482
location: 5401272..5401857
location: region:5401272-5401857:1
so has part: feature:5401272-5401857:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5401272-5401857:1:exon

LOC115833127
type: Gene
subclass of: SO_0000704
RO_0002162: 61853
gene: LOC115833127
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 5401945..5402760
location: region:5401945-5402760:1
so has part: feature:5401945-5402760:1:exon

115833127
type: Gene
SIO_000068: ncbigene

position:5401945:1
position: 5401945
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5402760:1
position: 5402760
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5401945-5402760:1:exon

LOC115833127
type: Exon
subclass of: SO_0000147
RO_0002162: 61853
gene: LOC115833127
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 ESTs
pseudo: true
SIO_010081: LOC115833127
subclass of: SO_0000673
so part of: LOC115833127
location: 5401945..5402760
location: region:5401945-5402760:1
so has part: feature:5401945-5402760:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5401945-5402760:1:exon

LOC115833203
type: Gene
subclass of: SO_0000704
RO_0002162: 61853
gene: LOC115833203
note: Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: 5508270..5508438
location: region:5508270-5508438:1
so has part: feature:5508270-5508438:1:exon
subclass of: SO_0000623

115833203
type: Gene
SIO_000068: ncbigene

position:5508270:1
position: 5508270
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5508438:1
position: 5508438
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5508270-5508438:1:exon

LOC115833203
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 61853
nc RNA class: snRNA
gene: LOC115833203
product: U1 spliceosomal RNA
inference: COORDINATES: nucleotide motif:Rfam:12.0:RF00003
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_004028647.1
SIO_010081: LOC115833203
subclass of: SO_0000673
so part of: LOC115833203
location: 5508270..5508438
location: region:5508270-5508438:1
so has part: feature:5508270-5508438:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5508270-5508438:1:exon

LOC100583823
type: Gene
subclass of: SO_0000704
RO_0002162: 61853
gene: LOC100583823
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 5858167..5858614
location: region:5858167-5858614:1
so has part: feature:5858167-5858614:1:exon

100583823
type: Gene
SIO_000068: ncbigene

position:5858167:1
position: 5858167
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5858614:1
position: 5858614
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5858167-5858614:1:exon

LOC100583823
type: Exon
subclass of: SO_0000147
RO_0002162: 61853
gene: LOC100583823
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 28% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC100583823
subclass of: SO_0000673
so part of: LOC100583823
location: 5858167..5858614
location: region:5858167-5858614:1
so has part: feature:5858167-5858614:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5858167-5858614:1:exon

LOC100581588
type: Gene
subclass of: SO_0000704
RO_0002162: 61853
gene: LOC100581588
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: complement(5874898..5875664)
location: region:5874898-5875664:-1
so has part: feature:5874898-5875664:-1:exon

100581588
type: Gene
SIO_000068: ncbigene

position:5874898:-1
position: 5874898
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5875664:-1
position: 5875664
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5874898-5875664:-1:exon

LOC100581588
type: Exon
subclass of: SO_0000147
RO_0002162: 61853
gene: LOC100581588
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins
pseudo: true
SIO_010081: LOC100581588
subclass of: SO_0000673
so part of: LOC100581588
location: complement(5874898..5875664)
location: region:5874898-5875664:-1
so has part: feature:5874898-5875664:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5874898-5875664:-1:exon

LOC115833130
type: Gene
subclass of: SO_0000704
RO_0002162: 61853
gene: LOC115833130
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(5996762..6003482)
location: region:5996762-6003482:-1
so has part: feature:5996762-6003482:-1:exon
subclass of: SO_0000011

115833130
type: Gene
SIO_000068: ncbigene

position:5996762:-1
position: 5996762
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6003482:-1
position: 6003482
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5996762-6003482:-1:exon

LOC115833130
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 61853
nc RNA class: lncRNA
gene: LOC115833130
product: uncharacterized LOC115833130
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA
transcript id: XR_004028570.1
SIO_010081: LOC115833130
subclass of: SO_0000673
so part of: LOC115833130
location: complement(join(5996762..5997056,6001437..6001498,6003428..6003482))
location: region:5996762-6003482:-1
so has part: feature:6003428-6003482:-1:exon
so has part: feature:6001437-6001498:-1:exon
so has part: feature:5996762-5997056:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6003428-6003482:-1:exon

position:6003428:-1
position: 6003428
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:6001437-6001498:-1:exon

position:6001437:-1
position: 6001437
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6001498:-1
position: 6001498
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:5996762-5997056:-1:exon

position:5997056:-1
position: 5997056
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC115833185
type: Gene
subclass of: SO_0000704
RO_0002162: 61853
gene: LOC115833185
note: Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: complement(6436397..6436501)
location: region:6436397-6436501:-1
so has part: feature:6436397-6436501:-1:exon
subclass of: SO_0000623

115833185
type: Gene
SIO_000068: ncbigene

position:6436397:-1
position: 6436397
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6436501:-1
position: 6436501
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6436397-6436501:-1:exon

LOC115833185
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 61853
nc RNA class: snRNA
gene: LOC115833185
product: U6 spliceosomal RNA
inference: COORDINATES: nucleotide motif:Rfam:12.0:RF00026
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_004028631.1
SIO_010081: LOC115833185
subclass of: SO_0000673
so part of: LOC115833185
location: complement(6436397..6436501)
location: region:6436397-6436501:-1
so has part: feature:6436397-6436501:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6436397-6436501:-1:exon

LOC115833175
type: Gene
subclass of: SO_0000704
RO_0002162: 61853
gene: LOC115833175
note: Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: 6666022..6666208
location: region:6666022-6666208:1
so has part: feature:6666022-6666208:1:exon
subclass of: SO_0000623

115833175
type: Gene
SIO_000068: ncbigene

position:6666022:1
position: 6666022
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6666208:1
position: 6666208
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6666022-6666208:1:exon

LOC115833175
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 61853
nc RNA class: snRNA
gene: LOC115833175
product: U2 spliceosomal RNA
inference: COORDINATES: nucleotide motif:Rfam:12.0:RF00004
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_004028623.1
SIO_010081: LOC115833175
subclass of: SO_0000673
so part of: LOC115833175
location: 6666022..6666208
location: region:6666022-6666208:1
so has part: feature:6666022-6666208:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6666022-6666208:1:exon

LOC115833147
type: Gene
subclass of: SO_0000704
RO_0002162: 61853
gene: LOC115833147
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: complement(6857989..6858485)
location: region:6857989-6858485:-1
so has part: feature:6857989-6858485:-1:exon

115833147
type: Gene
SIO_000068: ncbigene

position:6857989:-1
position: 6857989
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6858485:-1
position: 6858485
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6857989-6858485:-1:exon

LOC115833147
type: Exon
subclass of: SO_0000147
RO_0002162: 61853
gene: LOC115833147
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
pseudo: true
SIO_010081: LOC115833147
subclass of: SO_0000673
so part of: LOC115833147
location: complement(6857989..6858485)
location: region:6857989-6858485:-1
so has part: feature:6857989-6858485:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6857989-6858485:-1:exon

NCAM2
type: Gene
subclass of: SO_0000704
RO_0002162: 61853
gene: NCAM2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 7016553..7579314
location: region:7016553-7579314:1
so has part: feature:7016553-7579314:1:exon
subclass of: SO_0000010

100582593
type: Gene
SIO_000068: ncbigene

position:7016553:1
position: 7016553
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7579314:1
position: 7579314
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7016553-7579314:1:exon

NCAM2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 61853
gene: NCAM2
product: neural cell adhesion molecule 2, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 mRNAs, 125 ESTs, 9 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XM_030806254.1
SIO_010081: NCAM2
subclass of: SO_0000673
so part of: NCAM2
location: join(7016553..7016853,7315090..7315164,7318684..7318890,7320777..7320920,7326631..7326768,7366476..7366593,7377803..7377963,7380503..7380648,7413688..7413838,7450327..7450514,7457458..7457554,7470128..7470301,7501387..7501506,7503433..7503554,7512302..7512482,7544559..7544763,7570499..7570618,7573795..7579314)
location: region:7016553-7579314:1
so has part: feature:7016553-7016853:1:exon
so has part: feature:7315090-7315164:1:exon
so has part: feature:7318684-7318890:1:exon
so has part: feature:7320777-7320920:1:exon
so has part: feature:7326631-7326768:1:exon
so has part: feature:7366476-7366593:1:exon
so has part: feature:7377803-7377963:1:exon
so has part: feature:7380503-7380648:1:exon
so has part: feature:7413688-7413838:1:exon
so has part: feature:7450327-7450514:1:exon
so has part: feature:7457458-7457554:1:exon
so has part: feature:7470128-7470301:1:exon
so has part: feature:7501387-7501506:1:exon
so has part: feature:7503433-7503554:1:exon
so has part: feature:7512302-7512482:1:exon
so has part: feature:7544559-7544763:1:exon
so has part: feature:7570499-7570618:1:exon
so has part: feature:7573795-7579314:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:7016553-7016853:1:exon

position:7016853:1
position: 7016853
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:7315090-7315164:1:exon

position:7315090:1
position: 7315090
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7315164:1
position: 7315164
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:7318684-7318890:1:exon

position:7318684:1
position: 7318684
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7318890:1
position: 7318890
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:7320777-7320920:1:exon

position:7320777:1
position: 7320777
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7320920:1
position: 7320920
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:7326631-7326768:1:exon

position:7326631:1
position: 7326631
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7326768:1
position: 7326768
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:7366476-7366593:1:exon

position:7366476:1
position: 7366476
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7366593:1
position: 7366593
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:7377803-7377963:1:exon

position:7377803:1
position: 7377803
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7377963:1
position: 7377963
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:7380503-7380648:1:exon

position:7380503:1
position: 7380503
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7380648:1
position: 7380648
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:7413688-7413838:1:exon

position:7413688:1
position: 7413688
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7413838:1
position: 7413838
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:7450327-7450514:1:exon

position:7450327:1
position: 7450327
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7450514:1
position: 7450514
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:7457458-7457554:1:exon

position:7457458:1
position: 7457458
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7457554:1
position: 7457554
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:7470128-7470301:1:exon

position:7470128:1
position: 7470128
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7470301:1
position: 7470301
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:7501387-7501506:1:exon

position:7501387:1
position: 7501387
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7501506:1
position: 7501506
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:7503433-7503554:1:exon

position:7503433:1
position: 7503433
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7503554:1
position: 7503554
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:7512302-7512482:1:exon

position:7512302:1
position: 7512302
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7512482:1
position: 7512482
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:7544559-7544763:1:exon

position:7544559:1
position: 7544559
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7544763:1
position: 7544763
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:7570499-7570618:1:exon

position:7570499:1
position: 7570499
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7570618:1
position: 7570618
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:7573795-7579314:1:exon

position:7573795:1
position: 7573795
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

NCAM2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 61853
gene: NCAM2
product: neural cell adhesion molecule 2, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 48 ESTs, 4 Proteins, and 94% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XM_030806255.1
SIO_010081: NCAM2
subclass of: SO_0000673
so part of: NCAM2
location: join(7016553..7016853,7315090..7315164,7318684..7318890,7320777..7320920,7326631..7326768,7366476..7366593,7377803..7377963,7380503..7380648,7413688..7413838,7450327..7450514,7457458..7457554,7470128..7470301,7501387..7501506,7503433..7503554,7512302..7512482,7519779..7521604)
location: region:7016553-7521604:1
so has part: feature:7016553-7016853:1:exon
so has part: feature:7315090-7315164:1:exon
so has part: feature:7318684-7318890:1:exon
so has part: feature:7320777-7320920:1:exon
so has part: feature:7326631-7326768:1:exon
so has part: feature:7366476-7366593:1:exon
so has part: feature:7377803-7377963:1:exon
so has part: feature:7380503-7380648:1:exon
so has part: feature:7413688-7413838:1:exon
so has part: feature:7450327-7450514:1:exon
so has part: feature:7457458-7457554:1:exon
so has part: feature:7470128-7470301:1:exon
so has part: feature:7501387-7501506:1:exon
so has part: feature:7503433-7503554:1:exon
so has part: feature:7512302-7512482:1:exon
so has part: feature:7519779-7521604:1:exon

position:7521604:1
position: 7521604
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7016553-7016853:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:7315090-7315164:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:7318684-7318890:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:7320777-7320920:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:7326631-7326768:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:7366476-7366593:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:7377803-7377963:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:7380503-7380648:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:7413688-7413838:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:7450327-7450514:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:7457458-7457554:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:7470128-7470301:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:7501387-7501506:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:7503433-7503554:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:7512302-7512482:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:7519779-7521604:1:exon

position:7519779:1
position: 7519779
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

NCAM2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61853
gene: NCAM2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: neural cell adhesion molecule 2 isoform X1
translation: MSLLLSFYLLGLLVSSGQALLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRIVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQPHIIQLKNETTHENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSPDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNRIGTRFQEYILALADVPSSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEIWKIVRSHGVQTMVVLSNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQTLPVREPSPPSIHGQPSSGKSFKLSITKQDDGGAPILEYIVKYRSKDKEDQWLEKKVQGNKDHIILEHLQWTMGYEVQITAANRLGYSEPTVYEFSMPPKPNIIKDTLFNGLGLGAVIGLGVAALLLILVVTDVSCFFIRQCGLLMCITRRMCGKKSGSSGKSKELEEGKAAYLKDGSKEPIVEMRTEDERITNHEDGSPVNEPNETTPLTEPEKLPLKEENGKEALNPETIEIKVSNDIIQSKEDDSKA
SIO_010081: NCAM2
subclass of: SO_0000673
so part of: NCAM2
location: join(7016799..7016853,7315090..7315164,7318684..7318890,7320777..7320920,7326631..7326768,7366476..7366593,7377803..7377963,7380503..7380648,7413688..7413838,7450327..7450514,7457458..7457554,7470128..7470301,7501387..7501506,7503433..7503554,7512302..7512482,7544559..7544763,7570499..7570618,7573795..7573906)
location: region:7016799-7573906:1
so has part: feature:7016799-7016853:1:exon
so has part: feature:7315090-7315164:1:exon
so has part: feature:7318684-7318890:1:exon
so has part: feature:7320777-7320920:1:exon
so has part: feature:7326631-7326768:1:exon
so has part: feature:7366476-7366593:1:exon
so has part: feature:7377803-7377963:1:exon
so has part: feature:7380503-7380648:1:exon
so has part: feature:7413688-7413838:1:exon
so has part: feature:7450327-7450514:1:exon
so has part: feature:7457458-7457554:1:exon
so has part: feature:7470128-7470301:1:exon
so has part: feature:7501387-7501506:1:exon
so has part: feature:7503433-7503554:1:exon
so has part: feature:7512302-7512482:1:exon
so has part: feature:7544559-7544763:1:exon
so has part: feature:7570499-7570618:1:exon
so has part: feature:7573795-7573906:1:exon

XP_030662114.1
type: Protein
SIO_000068: ncbiprotein

position:7016799:1
position: 7016799
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7573906:1
position: 7573906
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7016799-7016853:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:7315090-7315164:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:7318684-7318890:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:7320777-7320920:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:7326631-7326768:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:7366476-7366593:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:7377803-7377963:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:7380503-7380648:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:7413688-7413838:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:7450327-7450514:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:7457458-7457554:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:7470128-7470301:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:7501387-7501506:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:7503433-7503554:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:7512302-7512482:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:7544559-7544763:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:7570499-7570618:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:7573795-7573906:1:exon

NCAM2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61853
gene: NCAM2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: neural cell adhesion molecule 2 isoform X2
translation: MSLLLSFYLLGLLVSSGQALLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRIVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQPHIIQLKNETTHENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSPDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNRIGTRFQEYILALADVPSSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEIWKIVRSHGVQTMVVLSNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQTLPVREPSPPSIHGQPSSGKSFKLSITKQDDGGAPILEYIVKYRSKDKEDQWLEKKVQGNKDHIILEHLQWTMGYEVQITAANRLGYSEPTVYEFSMPPKPNIIKDKCCEANKGENGSQSWQLNAAGFSFIIAISLSCMF
SIO_010081: NCAM2
subclass of: SO_0000673
so part of: NCAM2
location: join(7016799..7016853,7315090..7315164,7318684..7318890,7320777..7320920,7326631..7326768,7366476..7366593,7377803..7377963,7380503..7380648,7413688..7413838,7450327..7450514,7457458..7457554,7470128..7470301,7501387..7501506,7503433..7503554,7512302..7512482,7519779..7519885)
location: region:7016799-7519885:1
so has part: feature:7016799-7016853:1:exon
so has part: feature:7315090-7315164:1:exon
so has part: feature:7318684-7318890:1:exon
so has part: feature:7320777-7320920:1:exon
so has part: feature:7326631-7326768:1:exon
so has part: feature:7366476-7366593:1:exon
so has part: feature:7377803-7377963:1:exon
so has part: feature:7380503-7380648:1:exon
so has part: feature:7413688-7413838:1:exon
so has part: feature:7450327-7450514:1:exon
so has part: feature:7457458-7457554:1:exon
so has part: feature:7470128-7470301:1:exon
so has part: feature:7501387-7501506:1:exon
so has part: feature:7503433-7503554:1:exon
so has part: feature:7512302-7512482:1:exon
so has part: feature:7519779-7519885:1:exon

XP_030662115.1
type: Protein
SIO_000068: ncbiprotein

position:7519885:1
position: 7519885
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7016799-7016853:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:7315090-7315164:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:7318684-7318890:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:7320777-7320920:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:7326631-7326768:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:7366476-7366593:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:7377803-7377963:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:7380503-7380648:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:7413688-7413838:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:7450327-7450514:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:7457458-7457554:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:7470128-7470301:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:7501387-7501506:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:7503433-7503554:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:7512302-7512482:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:7519779-7519885:1:exon

NCAM2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 61853
gene: NCAM2
product: neural cell adhesion molecule 2, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 76 ESTs, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_030806256.1
SIO_010081: NCAM2
subclass of: SO_0000673
so part of: NCAM2
location: join(7016810..7016853,7117841..7117916,7315090..7315164,7318684..7318890,7320777..7320920,7326631..7326768,7366476..7366593,7377803..7377963,7380503..7380648,7413688..7413838,7450327..7450514,7457458..7457554,7470128..7470301,7501387..7501506,7503433..7503554,7512302..7512482,7544559..7544763,7570499..7570618,7573795..7578613)
location: region:7016810-7578613:1
so has part: feature:7016810-7016853:1:exon
so has part: feature:7117841-7117916:1:exon
so has part: feature:7315090-7315164:1:exon
so has part: feature:7318684-7318890:1:exon
so has part: feature:7320777-7320920:1:exon
so has part: feature:7326631-7326768:1:exon
so has part: feature:7366476-7366593:1:exon
so has part: feature:7377803-7377963:1:exon
so has part: feature:7380503-7380648:1:exon
so has part: feature:7413688-7413838:1:exon
so has part: feature:7450327-7450514:1:exon
so has part: feature:7457458-7457554:1:exon
so has part: feature:7470128-7470301:1:exon
so has part: feature:7501387-7501506:1:exon
so has part: feature:7503433-7503554:1:exon
so has part: feature:7512302-7512482:1:exon
so has part: feature:7544559-7544763:1:exon
so has part: feature:7570499-7570618:1:exon
so has part: feature:7573795-7578613:1:exon

position:7016810:1
position: 7016810
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7578613:1
position: 7578613
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7016810-7016853:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:7117841-7117916:1:exon

position:7117841:1
position: 7117841
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7117916:1
position: 7117916
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:7315090-7315164:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:7318684-7318890:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:7320777-7320920:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:7326631-7326768:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:7366476-7366593:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:7377803-7377963:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:7380503-7380648:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:7413688-7413838:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:7450327-7450514:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:7457458-7457554:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:7470128-7470301:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:7501387-7501506:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:7503433-7503554:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:7512302-7512482:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:7544559-7544763:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:7570499-7570618:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:7573795-7578613:1:exon

NCAM2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 61853
gene: NCAM2
product: neural cell adhesion molecule 2, transcript variant X5
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 93 ESTs, 10 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_030806258.1
SIO_010081: NCAM2
subclass of: SO_0000673
so part of: NCAM2
location: join(7230460..7230874,7315090..7315164,7318684..7318890,7320777..7320920,7326631..7326768,7366476..7366593,7377803..7377963,7380503..7380648,7413688..7413838,7450327..7450514,7457458..7457554,7470128..7470301,7501387..7501506,7503433..7503554,7512302..7512482,7544559..7544763,7570499..7570618,7573795..7579314)
location: region:7230460-7579314:1
so has part: feature:7230460-7230874:1:exon
so has part: feature:7315090-7315164:1:exon
so has part: feature:7318684-7318890:1:exon
so has part: feature:7320777-7320920:1:exon
so has part: feature:7326631-7326768:1:exon
so has part: feature:7366476-7366593:1:exon
so has part: feature:7377803-7377963:1:exon
so has part: feature:7380503-7380648:1:exon
so has part: feature:7413688-7413838:1:exon
so has part: feature:7450327-7450514:1:exon
so has part: feature:7457458-7457554:1:exon
so has part: feature:7470128-7470301:1:exon
so has part: feature:7501387-7501506:1:exon
so has part: feature:7503433-7503554:1:exon
so has part: feature:7512302-7512482:1:exon
so has part: feature:7544559-7544763:1:exon
so has part: feature:7570499-7570618:1:exon
so has part: feature:7573795-7579314:1:exon

position:7230460:1
position: 7230460
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7230460-7230874:1:exon

position:7230874:1
position: 7230874
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:7315090-7315164:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:7318684-7318890:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:7320777-7320920:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:7326631-7326768:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:7366476-7366593:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:7377803-7377963:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:7380503-7380648:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:7413688-7413838:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:7450327-7450514:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:7457458-7457554:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:7470128-7470301:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:7501387-7501506:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:7503433-7503554:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:7512302-7512482:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:7544559-7544763:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:7570499-7570618:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:7573795-7579314:1:exon

NCAM2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61853
gene: NCAM2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: neural cell adhesion molecule 2 isoform X4
translation: MVRSDSGGKVYCDYHNRQGLFVDRKYNKALYPEEGQPETYYRTALLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRIVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQPHIIQLKNETTHENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSPDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNRIGTRFQEYILALADVPSSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEIWKIVRSHGVQTMVVLSNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQTLPVREPSPPSIHGQPSSGKSFKLSITKQDDGGAPILEYIVKYRSKDKEDQWLEKKVQGNKDHIILEHLQWTMGYEVQITAANRLGYSEPTVYEFSMPPKPNIIKDTLFNGLGLGAVIGLGVAALLLILVVTDVSCFFIRQCGLLMCITRRMCGKKSGSSGKSKELEEGKAAYLKDGSKEPIVEMRTEDERITNHEDGSPVNEPNETTPLTEPEKLPLKEENGKEALNPETIEIKVSNDIIQSKEDDSKA
SIO_010081: NCAM2
subclass of: SO_0000673
so part of: NCAM2
location: join(7230745..7230874,7315090..7315164,7318684..7318890,7320777..7320920,7326631..7326768,7366476..7366593,7377803..7377963,7380503..7380648,7413688..7413838,7450327..7450514,7457458..7457554,7470128..7470301,7501387..7501506,7503433..7503554,7512302..7512482,7544559..7544763,7570499..7570618,7573795..7573906)
location: region:7230745-7573906:1
so has part: feature:7230745-7230874:1:exon
so has part: feature:7315090-7315164:1:exon
so has part: feature:7318684-7318890:1:exon
so has part: feature:7320777-7320920:1:exon
so has part: feature:7326631-7326768:1:exon
so has part: feature:7366476-7366593:1:exon
so has part: feature:7377803-7377963:1:exon
so has part: feature:7380503-7380648:1:exon
so has part: feature:7413688-7413838:1:exon
so has part: feature:7450327-7450514:1:exon
so has part: feature:7457458-7457554:1:exon
so has part: feature:7470128-7470301:1:exon
so has part: feature:7501387-7501506:1:exon
so has part: feature:7503433-7503554:1:exon
so has part: feature:7512302-7512482:1:exon
so has part: feature:7544559-7544763:1:exon
so has part: feature:7570499-7570618:1:exon
so has part: feature:7573795-7573906:1:exon

XP_030662118.1
type: Protein
SIO_000068: ncbiprotein

position:7230745:1
position: 7230745
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7230745-7230874:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:7315090-7315164:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:7318684-7318890:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:7320777-7320920:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:7326631-7326768:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:7366476-7366593:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:7377803-7377963:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:7380503-7380648:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:7413688-7413838:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:7450327-7450514:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:7457458-7457554:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:7470128-7470301:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:7501387-7501506:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:7503433-7503554:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:7512302-7512482:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:7544559-7544763:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:7570499-7570618:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:7573795-7573906:1:exon

NCAM2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 61853
gene: NCAM2
product: neural cell adhesion molecule 2, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 76 ESTs, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_030806257.1
SIO_010081: NCAM2
subclass of: SO_0000673
so part of: NCAM2
location: join(7303320..7303334,7315090..7315164,7318684..7318890,7320777..7320920,7326631..7326768,7366476..7366593,7377803..7377963,7380503..7380648,7413688..7413838,7450327..7450514,7457458..7457554,7470128..7470301,7501387..7501506,7503433..7503554,7512302..7512482,7544559..7544763,7570499..7570618,7573795..7578613)
location: region:7303320-7578613:1
so has part: feature:7303320-7303334:1:exon
so has part: feature:7315090-7315164:1:exon
so has part: feature:7318684-7318890:1:exon
so has part: feature:7320777-7320920:1:exon
so has part: feature:7326631-7326768:1:exon
so has part: feature:7366476-7366593:1:exon
so has part: feature:7377803-7377963:1:exon
so has part: feature:7380503-7380648:1:exon
so has part: feature:7413688-7413838:1:exon
so has part: feature:7450327-7450514:1:exon
so has part: feature:7457458-7457554:1:exon
so has part: feature:7470128-7470301:1:exon
so has part: feature:7501387-7501506:1:exon
so has part: feature:7503433-7503554:1:exon
so has part: feature:7512302-7512482:1:exon
so has part: feature:7544559-7544763:1:exon
so has part: feature:7570499-7570618:1:exon
so has part: feature:7573795-7578613:1:exon

position:7303320:1
position: 7303320
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7303320-7303334:1:exon

position:7303334:1
position: 7303334
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:7315090-7315164:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:7318684-7318890:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:7320777-7320920:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:7326631-7326768:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:7366476-7366593:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:7377803-7377963:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:7380503-7380648:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:7413688-7413838:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:7450327-7450514:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:7457458-7457554:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:7470128-7470301:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:7501387-7501506:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:7503433-7503554:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:7512302-7512482:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:7544559-7544763:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:7570499-7570618:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:7573795-7578613:1:exon

NCAM2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61853
gene: NCAM2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: neural cell adhesion molecule 2 isoform X3
translation: MLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQPHIIQLKNETTHENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSPDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNRIGTRFQEYILALADVPSSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEIWKIVRSHGVQTMVVLSNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQTLPVREPSPPSIHGQPSSGKSFKLSITKQDDGGAPILEYIVKYRSKDKEDQWLEKKVQGNKDHIILEHLQWTMGYEVQITAANRLGYSEPTVYEFSMPPKPNIIKDTLFNGLGLGAVIGLGVAALLLILVVTDVSCFFIRQCGLLMCITRRMCGKKSGSSGKSKELEEGKAAYLKDGSKEPIVEMRTEDERITNHEDGSPVNEPNETTPLTEPEKLPLKEENGKEALNPETIEIKVSNDIIQSKEDDSKA
SIO_010081: NCAM2
subclass of: SO_0000673
so part of: NCAM2
location: join(7326642..7326768,7366476..7366593,7377803..7377963,7380503..7380648,7413688..7413838,7450327..7450514,7457458..7457554,7470128..7470301,7501387..7501506,7503433..7503554,7512302..7512482,7544559..7544763,7570499..7570618,7573795..7573906)
location: region:7326642-7573906:1
so has part: feature:7326642-7326768:1:exon
so has part: feature:7366476-7366593:1:exon
so has part: feature:7377803-7377963:1:exon
so has part: feature:7380503-7380648:1:exon
so has part: feature:7413688-7413838:1:exon
so has part: feature:7450327-7450514:1:exon
so has part: feature:7457458-7457554:1:exon
so has part: feature:7470128-7470301:1:exon
so has part: feature:7501387-7501506:1:exon
so has part: feature:7503433-7503554:1:exon
so has part: feature:7512302-7512482:1:exon
so has part: feature:7544559-7544763:1:exon
so has part: feature:7570499-7570618:1:exon
so has part: feature:7573795-7573906:1:exon

XP_030662116.1
type: Protein
SIO_000068: ncbiprotein

position:7326642:1
position: 7326642
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7326642-7326768:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:7366476-7366593:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:7377803-7377963:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:7380503-7380648:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:7413688-7413838:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:7450327-7450514:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:7457458-7457554:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:7470128-7470301:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:7501387-7501506:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:7503433-7503554:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:7512302-7512482:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:7544559-7544763:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:7570499-7570618:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:7573795-7573906:1:exon

NCAM2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61853
gene: NCAM2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: neural cell adhesion molecule 2 isoform X3
translation: MLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQPHIIQLKNETTHENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSPDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNRIGTRFQEYILALADVPSSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEIWKIVRSHGVQTMVVLSNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQTLPVREPSPPSIHGQPSSGKSFKLSITKQDDGGAPILEYIVKYRSKDKEDQWLEKKVQGNKDHIILEHLQWTMGYEVQITAANRLGYSEPTVYEFSMPPKPNIIKDTLFNGLGLGAVIGLGVAALLLILVVTDVSCFFIRQCGLLMCITRRMCGKKSGSSGKSKELEEGKAAYLKDGSKEPIVEMRTEDERITNHEDGSPVNEPNETTPLTEPEKLPLKEENGKEALNPETIEIKVSNDIIQSKEDDSKA
SIO_010081: NCAM2
subclass of: SO_0000673
so part of: NCAM2
location: join(7326642..7326768,7366476..7366593,7377803..7377963,7380503..7380648,7413688..7413838,7450327..7450514,7457458..7457554,7470128..7470301,7501387..7501506,7503433..7503554,7512302..7512482,7544559..7544763,7570499..7570618,7573795..7573906)
location: region:7326642-7573906:1
so has part: feature:7326642-7326768:1:exon
so has part: feature:7366476-7366593:1:exon
so has part: feature:7377803-7377963:1:exon
so has part: feature:7380503-7380648:1:exon
so has part: feature:7413688-7413838:1:exon
so has part: feature:7450327-7450514:1:exon
so has part: feature:7457458-7457554:1:exon
so has part: feature:7470128-7470301:1:exon
so has part: feature:7501387-7501506:1:exon
so has part: feature:7503433-7503554:1:exon
so has part: feature:7512302-7512482:1:exon
so has part: feature:7544559-7544763:1:exon
so has part: feature:7570499-7570618:1:exon
so has part: feature:7573795-7573906:1:exon

XP_030662117.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7326642-7326768:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:7366476-7366593:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:7377803-7377963:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:7380503-7380648:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:7413688-7413838:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:7450327-7450514:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:7457458-7457554:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:7470128-7470301:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:7501387-7501506:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:7503433-7503554:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:7512302-7512482:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:7544559-7544763:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:7570499-7570618:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:7573795-7573906:1:exon

LOC100590957
type: Gene
subclass of: SO_0000704
RO_0002162: 61853
gene: LOC100590957
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: complement(7343907..7345611)
location: region:7343907-7345611:-1
so has part: feature:7343907-7345611:-1:exon

100590957
type: Gene
SIO_000068: ncbigene

position:7343907:-1
position: 7343907
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7345611:-1
position: 7345611
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7343907-7345611:-1:exon

LOC100590957
type: Exon
subclass of: SO_0000147
RO_0002162: 61853
gene: LOC100590957
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins, and 42% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC100590957
subclass of: SO_0000673
so part of: LOC100590957
location: complement(7343907..7345611)
location: region:7343907-7345611:-1
so has part: feature:7343907-7345611:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:7343907-7345611:-1:exon

LOC105738727
type: Gene
subclass of: SO_0000704
RO_0002162: 61853
gene: LOC105738727
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 7779281..7814520
location: region:7779281-7814520:1
so has part: feature:7779281-7814520:1:exon
subclass of: SO_0000011

105738727
type: Gene
SIO_000068: ncbigene

position:7779281:1
position: 7779281
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7814520:1
position: 7814520
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7779281-7814520:1:exon

LOC105738727
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 61853
nc RNA class: lncRNA
gene: LOC105738727
product: uncharacterized LOC105738727
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs
transcript id: XR_001114577.1
SIO_010081: LOC105738727
subclass of: SO_0000673
so part of: LOC105738727
location: join(7779281..7779339,7780679..7780968,7800878..7800958,7802186..7802272,7814284..7814520)
location: region:7779281-7814520:1
so has part: feature:7779281-7779339:1:exon
so has part: feature:7780679-7780968:1:exon
so has part: feature:7800878-7800958:1:exon
so has part: feature:7802186-7802272:1:exon
so has part: feature:7814284-7814520:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:7779281-7779339:1:exon

position:7779339:1
position: 7779339
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:7780679-7780968:1:exon

position:7780679:1
position: 7780679
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7780968:1
position: 7780968
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:7800878-7800958:1:exon

position:7800878:1
position: 7800878
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7800958:1
position: 7800958
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:7802186-7802272:1:exon

position:7802186:1
position: 7802186
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7802272:1
position: 7802272
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:7814284-7814520:1:exon

position:7814284:1
position: 7814284
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC115833178
type: Gene
subclass of: SO_0000704
RO_0002162: 61853
gene: LOC115833178
note: Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: 8189205..8189343
location: region:8189205-8189343:1
so has part: feature:8189205-8189343:1:exon
subclass of: SO_0000623

115833178
type: Gene
SIO_000068: ncbigene

position:8189205:1
position: 8189205
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8189343:1
position: 8189343
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8189205-8189343:1:exon

LOC115833178
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 61853
nc RNA class: snRNA
gene: LOC115833178
product: U4 spliceosomal RNA
inference: COORDINATES: nucleotide motif:Rfam:12.0:RF00015
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_004028625.1
SIO_010081: LOC115833178
subclass of: SO_0000673
so part of: LOC115833178
location: 8189205..8189343
location: region:8189205-8189343:1
so has part: feature:8189205-8189343:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:8189205-8189343:1:exon

LOC100582941
type: Gene
subclass of: SO_0000704
RO_0002162: 61853
gene: LOC100582941
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: complement(8398040..8400904)
location: region:8398040-8400904:-1
so has part: feature:8398040-8400904:-1:exon

100582941
type: Gene
SIO_000068: ncbigene

position:8398040:-1
position: 8398040
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8400904:-1
position: 8400904
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8398040-8400904:-1:exon

LOC100582941
type: Exon
subclass of: SO_0000147
RO_0002162: 61853
gene: LOC100582941
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 16 Proteins
pseudo: true
SIO_010081: LOC100582941
subclass of: SO_0000673
so part of: LOC100582941
location: complement(8398040..8400317)
location: region:8398040-8400317:-1
so has part: feature:8398040-8400317:-1:exon

position:8400317:-1
position: 8400317
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8398040-8400317:-1:exon

LOC100582941
type: Exon
subclass of: SO_0000147
RO_0002162: 61853
gene: LOC100582941
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 16 Proteins
pseudo: true
SIO_010081: LOC100582941
subclass of: SO_0000673
so part of: LOC100582941
location: complement(8400860..8400904)
location: region:8400860-8400904:-1
so has part: feature:8400860-8400904:-1:exon

position:8400860:-1
position: 8400860
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8400860-8400904:-1:exon

LOC100591968
type: Gene
subclass of: SO_0000704
RO_0002162: 61853
gene: LOC100591968
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 8932454..8938797
location: region:8932454-8938797:1
so has part: feature:8932454-8938797:1:exon

100591968
type: Gene
SIO_000068: ncbigene

position:8932454:1
position: 8932454
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8938797:1
position: 8938797
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8932454-8938797:1:exon

LOC100591968
type: Exon
subclass of: SO_0000147
RO_0002162: 61853
gene: LOC100591968
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins
pseudo: true
SIO_010081: LOC100591968
subclass of: SO_0000673
so part of: LOC100591968
location: 8932454..8932493
location: region:8932454-8932493:1
so has part: feature:8932454-8932493:1:exon

position:8932493:1
position: 8932493
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8932454-8932493:1:exon

LOC100591968
type: Exon
subclass of: SO_0000147
RO_0002162: 61853
gene: LOC100591968
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins
pseudo: true
SIO_010081: LOC100591968
subclass of: SO_0000673
so part of: LOC100591968
location: 8936774..8937040
location: region:8936774-8937040:1
so has part: feature:8936774-8937040:1:exon

position:8936774:1
position: 8936774
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8937040:1
position: 8937040
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8936774-8937040:1:exon

LOC100591968
type: Exon
subclass of: SO_0000147
RO_0002162: 61853
gene: LOC100591968
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins
pseudo: true
SIO_010081: LOC100591968
subclass of: SO_0000673
so part of: LOC100591968
location: 8937160..8937478
location: region:8937160-8937478:1
so has part: feature:8937160-8937478:1:exon

position:8937160:1
position: 8937160
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8937478:1
position: 8937478
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8937160-8937478:1:exon

LOC100591968
type: Exon
subclass of: SO_0000147
RO_0002162: 61853
gene: LOC100591968
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins
pseudo: true
SIO_010081: LOC100591968
subclass of: SO_0000673
so part of: LOC100591968
location: 8937790..8938797
location: region:8937790-8938797:1
so has part: feature:8937790-8938797:1:exon

position:8937790:1
position: 8937790
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8937790-8938797:1:exon

LOC115833204
type: Gene
subclass of: SO_0000704
RO_0002162: 61853
gene: LOC115833204
note: Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: complement(9100272..9100459)
location: region:9100272-9100459:-1
so has part: feature:9100272-9100459:-1:exon
subclass of: SO_0000623

115833204
type: Gene
SIO_000068: ncbigene

position:9100272:-1
position: 9100272
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9100459:-1
position: 9100459
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9100272-9100459:-1:exon

LOC115833204
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 61853
nc RNA class: snRNA
gene: LOC115833204
product: U2 spliceosomal RNA
inference: COORDINATES: nucleotide motif:Rfam:12.0:RF00004
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_004028648.1
SIO_010081: LOC115833204
subclass of: SO_0000673
so part of: LOC115833204
location: complement(9100272..9100459)
location: region:9100272-9100459:-1
so has part: feature:9100272-9100459:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:9100272-9100459:-1:exon

LOC100592310
type: Gene
subclass of: SO_0000704
RO_0002162: 61853
gene: LOC100592310
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 9185578..9186314
location: region:9185578-9186314:1
so has part: feature:9185578-9186314:1:exon

100592310
type: Gene
SIO_000068: ncbigene

position:9185578:1
position: 9185578
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9186314:1
position: 9186314
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9185578-9186314:1:exon

LOC100592310
type: Exon
subclass of: SO_0000147
RO_0002162: 61853
gene: LOC100592310
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins
pseudo: true
SIO_010081: LOC100592310
subclass of: SO_0000673
so part of: LOC100592310
location: 9185578..9186314
location: region:9185578-9186314:1
so has part: feature:9185578-9186314:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:9185578-9186314:1:exon

LOC100592643
type: Gene
subclass of: SO_0000704
RO_0002162: 61853
gene: LOC100592643
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: complement(9207278..9208736)
location: region:9207278-9208736:-1
so has part: feature:9207278-9208736:-1:exon

100592643
type: Gene
SIO_000068: ncbigene

position:9207278:-1
position: 9207278
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9208736:-1
position: 9208736
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9207278-9208736:-1:exon

LOC100592643
type: Exon
subclass of: SO_0000147
RO_0002162: 61853
gene: LOC100592643
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 31 Proteins
pseudo: true
SIO_010081: LOC100592643
subclass of: SO_0000673
so part of: LOC100592643
location: complement(9207278..9207983)
location: region:9207278-9207983:-1
so has part: feature:9207278-9207983:-1:exon

position:9207983:-1
position: 9207983
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9207278-9207983:-1:exon

LOC100592643
type: Exon
subclass of: SO_0000147
RO_0002162: 61853
gene: LOC100592643
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 31 Proteins
pseudo: true
SIO_010081: LOC100592643
subclass of: SO_0000673
so part of: LOC100592643
location: complement(9208088..9208736)
location: region:9208088-9208736:-1
so has part: feature:9208088-9208736:-1:exon

position:9208088:-1
position: 9208088
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9208088-9208736:-1:exon

LOC101179629
type: Gene
subclass of: SO_0000704
RO_0002162: 61853
gene: LOC101179629
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(9895808..9898601)
location: region:9895808-9898601:-1
so has part: feature:9895808-9898601:-1:exon
subclass of: SO_0000011

101179629
type: Gene
SIO_000068: ncbigene

position:9895808:-1
position: 9895808
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9898601:-1
position: 9898601
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9895808-9898601:-1:exon

LOC101179629
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 61853
nc RNA class: lncRNA
gene: LOC101179629
product: uncharacterized LOC101179629
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs
transcript id: XR_180264.1
SIO_010081: LOC101179629
subclass of: SO_0000673
so part of: LOC101179629
location: complement(join(9895808..9896443,9897888..9898027,9898482..9898601))
location: region:9895808-9898601:-1
so has part: feature:9898482-9898601:-1:exon
so has part: feature:9897888-9898027:-1:exon
so has part: feature:9895808-9896443:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:9898482-9898601:-1:exon

position:9898482:-1
position: 9898482
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:9897888-9898027:-1:exon

position:9897888:-1
position: 9897888
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9898027:-1
position: 9898027
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:9895808-9896443:-1:exon

position:9896443:-1
position: 9896443
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC115833163
type: Gene
subclass of: SO_0000704
RO_0002162: 61853
gene: LOC115833163
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 9946729..10030979
location: region:9946729-10030979:1
so has part: feature:9946729-10030979:1:exon
subclass of: SO_0000011

115833163
type: Gene
SIO_000068: ncbigene

position:9946729:1
position: 9946729
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10030979:1
position: 10030979
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9946729-10030979:1:exon

LOC115833163
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 61853
nc RNA class: lncRNA
gene: LOC115833163
product: uncharacterized LOC115833163
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA
transcript id: XR_004028609.1
SIO_010081: LOC115833163
subclass of: SO_0000673
so part of: LOC115833163
location: join(9946729..9946893,9982592..9982772,9985501..9985684,9986124..9986244,10026228..10026290,10028794..10030979)
location: region:9946729-10030979:1
so has part: feature:9946729-9946893:1:exon
so has part: feature:9982592-9982772:1:exon
so has part: feature:9985501-9985684:1:exon
so has part: feature:9986124-9986244:1:exon
so has part: feature:10026228-10026290:1:exon
so has part: feature:10028794-10030979:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:9946729-9946893:1:exon

position:9946893:1
position: 9946893
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:9982592-9982772:1:exon

position:9982592:1
position: 9982592
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9982772:1
position: 9982772
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:9985501-9985684:1:exon

position:9985501:1
position: 9985501
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9985684:1
position: 9985684
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:9986124-9986244:1:exon

position:9986124:1
position: 9986124
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9986244:1
position: 9986244
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:10026228-10026290:1:exon

position:10026228:1
position: 10026228
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10026290:1
position: 10026290
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:10028794-10030979:1:exon

position:10028794:1
position: 10028794
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC105738718
type: Gene
subclass of: SO_0000704
RO_0002162: 61853
gene: LOC105738718
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 10304041..10517448
location: region:10304041-10517448:1
so has part: feature:10304041-10517448:1:exon
subclass of: SO_0000011

105738718
type: Gene
SIO_000068: ncbigene

position:10304041:1
position: 10304041
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10517448:1
position: 10517448
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10304041-10517448:1:exon

LOC105738718
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 61853
nc RNA class: lncRNA
gene: LOC105738718
product: uncharacterized LOC105738718
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs
transcript id: XR_001114563.2
SIO_010081: LOC105738718
subclass of: SO_0000673
so part of: LOC105738718
location: join(10304041..10304216,10307919..10308069,10490939..10491014,10515120..10517448)
location: region:10304041-10517448:1
so has part: feature:10304041-10304216:1:exon
so has part: feature:10307919-10308069:1:exon
so has part: feature:10490939-10491014:1:exon
so has part: feature:10515120-10517448:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:10304041-10304216:1:exon

position:10304216:1
position: 10304216
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:10307919-10308069:1:exon

position:10307919:1
position: 10307919
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10308069:1
position: 10308069
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:10490939-10491014:1:exon

position:10490939:1
position: 10490939
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10491014:1
position: 10491014
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:10515120-10517448:1:exon

position:10515120:1
position: 10515120
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC115833160
type: Gene
subclass of: SO_0000704
RO_0002162: 61853
gene: LOC115833160
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(10851971..10864835)
location: region:10851971-10864835:-1
so has part: feature:10851971-10864835:-1:exon
subclass of: SO_0000011

115833160
type: Gene
SIO_000068: ncbigene

position:10851971:-1
position: 10851971
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10864835:-1
position: 10864835
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10851971-10864835:-1:exon

LOC115833160
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 61853
nc RNA class: lncRNA
gene: LOC115833160
product: uncharacterized LOC115833160
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 ESTs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XR_004028607.1
SIO_010081: LOC115833160
subclass of: SO_0000673
so part of: LOC115833160
location: complement(join(10851971..10852921,10864635..10864835))
location: region:10851971-10864835:-1
so has part: feature:10864635-10864835:-1:exon
so has part: feature:10851971-10852921:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:10864635-10864835:-1:exon

position:10864635:-1
position: 10864635
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:10851971-10852921:-1:exon

position:10852921:-1
position: 10852921
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC115833159
type: Gene
subclass of: SO_0000704
RO_0002162: 61853
gene: LOC115833159
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(10887941..10914583)
location: region:10887941-10914583:-1
so has part: feature:10887941-10914583:-1:exon
subclass of: SO_0000011

115833159
type: Gene
SIO_000068: ncbigene

position:10887941:-1
position: 10887941
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10914583:-1
position: 10914583
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10887941-10914583:-1:exon

LOC115833159
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 61853
nc RNA class: lncRNA
gene: LOC115833159
product: uncharacterized LOC115833159, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XR_004028606.1
SIO_010081: LOC115833159
subclass of: SO_0000673
so part of: LOC115833159
location: complement(join(10887941..10888371,10914181..10914583))
location: region:10887941-10914583:-1
so has part: feature:10914181-10914583:-1:exon
so has part: feature:10887941-10888371:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:10914181-10914583:-1:exon

position:10914181:-1
position: 10914181
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:10887941-10888371:-1:exon

position:10888371:-1
position: 10888371
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC115833159
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 61853
nc RNA class: lncRNA
gene: LOC115833159
product: uncharacterized LOC115833159, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XR_004028604.1
SIO_010081: LOC115833159
subclass of: SO_0000673
so part of: LOC115833159
location: complement(join(10887941..10888371,10891797..10891892,10914181..10914583))
location: region:10887941-10914583:-1
so has part: feature:10914181-10914583:-1:exon
so has part: feature:10891797-10891892:-1:exon
so has part: feature:10887941-10888371:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:10914181-10914583:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:10891797-10891892:-1:exon

position:10891797:-1
position: 10891797
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10891892:-1
position: 10891892
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:10887941-10888371:-1:exon

LOC115833159
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 61853
nc RNA class: lncRNA
gene: LOC115833159
product: uncharacterized LOC115833159, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XR_004028605.1
SIO_010081: LOC115833159
subclass of: SO_0000673
so part of: LOC115833159
location: complement(join(10887941..10888371,10888742..10889305))
location: region:10887941-10889305:-1
so has part: feature:10888742-10889305:-1:exon
so has part: feature:10887941-10888371:-1:exon

position:10889305:-1
position: 10889305
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10888742-10889305:-1:exon

position:10888742:-1
position: 10888742
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:10887941-10888371:-1:exon

MRPL39
type: Gene
subclass of: SO_0000704
RO_0002162: 61853
gene: MRPL39
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(11057296..11078839)
location: region:11057296-11078839:-1
so has part: feature:11057296-11078839:-1:exon
subclass of: SO_0000010

100586385
type: Gene
SIO_000068: ncbigene

position:11057296:-1
position: 11057296
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11078839:-1
position: 11078839
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11057296-11078839:-1:exon

MRPL39
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 61853
gene: MRPL39
product: mitochondrial ribosomal protein L39
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 149 ESTs, 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XM_003263801.4
SIO_010081: MRPL39
subclass of: SO_0000673
so part of: MRPL39
location: complement(join(11057296..11057391,11060488..11060535,11064488..11064641,11065565..11065630,11068654..11068766,11071138..11071205,11072725..11072824,11075150..11075289,11077800..11078006,11078731..11078839))
location: region:11057296-11078839:-1
so has part: feature:11078731-11078839:-1:exon
so has part: feature:11077800-11078006:-1:exon
so has part: feature:11075150-11075289:-1:exon
so has part: feature:11072725-11072824:-1:exon
so has part: feature:11071138-11071205:-1:exon
so has part: feature:11068654-11068766:-1:exon
so has part: feature:11065565-11065630:-1:exon
so has part: feature:11064488-11064641:-1:exon
so has part: feature:11060488-11060535:-1:exon
so has part: feature:11057296-11057391:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:11078731-11078839:-1:exon

position:11078731:-1
position: 11078731
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:11077800-11078006:-1:exon

position:11077800:-1
position: 11077800
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11078006:-1
position: 11078006
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:11075150-11075289:-1:exon

position:11075150:-1
position: 11075150
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11075289:-1
position: 11075289
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:11072725-11072824:-1:exon

position:11072725:-1
position: 11072725
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11072824:-1
position: 11072824
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:11071138-11071205:-1:exon

position:11071138:-1
position: 11071138
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11071205:-1
position: 11071205
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:11068654-11068766:-1:exon

position:11068654:-1
position: 11068654
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11068766:-1
position: 11068766
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:11065565-11065630:-1:exon

position:11065565:-1
position: 11065565
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11065630:-1
position: 11065630
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:11064488-11064641:-1:exon

position:11064488:-1
position: 11064488
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11064641:-1
position: 11064641
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:11060488-11060535:-1:exon

position:11060488:-1
position: 11060488
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11060535:-1
position: 11060535
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:11057296-11057391:-1:exon

position:11057391:-1
position: 11057391
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

MRPL39
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61853
gene: MRPL39
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: 39S ribosomal protein L39, mitochondrial
translation: MEALAMGSRALRLWRVAPGGGISWRFIATSPASRLSPTELTEMRNDFFNKEKARQLSLTPRTEKIEVKHIGKTDPGTVFVMNKNISTPYSCAMHLSEWYCRKSILALVDGQPWDMYKPLTKSCEIKFLTFKDRDPGEVNKAYWRSCAMMMGCVIERAFKDEYVVNLVRAPEVPVISGAFCYDVVLDSKLDEWMPTKENLRSFTKDAHALIYKDLPFETLEVEAKVALEIFQHNKYKIDFIEEKASQNSERIIKLHRIGDFIDVSEGPLIPRTSICFQYEVSAVHNLQPTQPSLIRRFQGVSLPVHLRAHFTIWDKLLERSRKMVTEDQSKPTEECTST
SIO_010081: MRPL39
subclass of: SO_0000673
so part of: MRPL39
location: complement(join(11057344..11057391,11060488..11060535,11064488..11064641,11065565..11065630,11068654..11068766,11071138..11071205,11072725..11072824,11075150..11075289,11077800..11078006,11078731..11078803))
location: region:11057344-11078803:-1
so has part: feature:11078731-11078803:-1:exon
so has part: feature:11077800-11078006:-1:exon
so has part: feature:11075150-11075289:-1:exon
so has part: feature:11072725-11072824:-1:exon
so has part: feature:11071138-11071205:-1:exon
so has part: feature:11068654-11068766:-1:exon
so has part: feature:11065565-11065630:-1:exon
so has part: feature:11064488-11064641:-1:exon
so has part: feature:11060488-11060535:-1:exon
so has part: feature:11057344-11057391:-1:exon

XP_003263849.1
type: Protein
SIO_000068: ncbiprotein

position:11057344:-1
position: 11057344
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11078803:-1
position: 11078803
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11078731-11078803:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:11077800-11078006:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:11075150-11075289:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:11072725-11072824:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:11071138-11071205:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:11068654-11068766:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:11065565-11065630:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:11064488-11064641:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:11060488-11060535:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:11057344-11057391:-1:exon

JAM2
type: Gene
subclass of: SO_0000704
RO_0002162: 61853
gene: JAM2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 11110928..11188053
location: region:11110928-11188053:1
so has part: feature:11110928-11188053:1:exon
subclass of: SO_0000010

100585596
type: Gene
SIO_000068: ncbigene

position:11110928:1
position: 11110928
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11188053:1
position: 11188053
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11110928-11188053:1:exon

JAM2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 61853
gene: JAM2
product: junctional adhesion molecule 2, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 98 ESTs, 1 Protein, and 94% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_003263800.4
SIO_010081: JAM2
subclass of: SO_0000673
so part of: JAM2
location: join(11110928..11111605,11155436..11155501,11161721..11161828,11165868..11166020,11169267..11169469,11172716..11172815,11176498..11176605,11179977..11179992,11182838..11182880,11184723..11184797)
location: region:11110928-11184797:1
so has part: feature:11110928-11111605:1:exon
so has part: feature:11155436-11155501:1:exon
so has part: feature:11161721-11161828:1:exon
so has part: feature:11165868-11166020:1:exon
so has part: feature:11169267-11169469:1:exon
so has part: feature:11172716-11172815:1:exon
so has part: feature:11176498-11176605:1:exon
so has part: feature:11179977-11179992:1:exon
so has part: feature:11182838-11182880:1:exon
so has part: feature:11184723-11184797:1:exon

position:11184797:1
position: 11184797
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11110928-11111605:1:exon

position:11111605:1
position: 11111605
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:11155436-11155501:1:exon

position:11155436:1
position: 11155436
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11155501:1
position: 11155501
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:11161721-11161828:1:exon

position:11161721:1
position: 11161721
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11161828:1
position: 11161828
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:11165868-11166020:1:exon

position:11165868:1
position: 11165868
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11166020:1
position: 11166020
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:11169267-11169469:1:exon

position:11169267:1
position: 11169267
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11169469:1
position: 11169469
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:11172716-11172815:1:exon

position:11172716:1
position: 11172716
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11172815:1
position: 11172815
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:11176498-11176605:1:exon

position:11176498:1
position: 11176498
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11176605:1
position: 11176605
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:11179977-11179992:1:exon

position:11179977:1
position: 11179977
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11179992:1
position: 11179992
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:11182838-11182880:1:exon

position:11182838:1
position: 11182838
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11182880:1
position: 11182880
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:11184723-11184797:1:exon

position:11184723:1
position: 11184723
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

JAM2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 61853
gene: JAM2
product: junctional adhesion molecule 2, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 mRNAs, 228 ESTs, 3 Proteins, and 96% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XM_003263798.4
SIO_010081: JAM2
subclass of: SO_0000673
so part of: JAM2
location: join(11110942..11111605,11155436..11155501,11161721..11161828,11165868..11166020,11169267..11169469,11172716..11172815,11176498..11176605,11179977..11179992,11182838..11182880,11185129..11188053)
location: region:11110942-11188053:1
so has part: feature:11110942-11111605:1:exon
so has part: feature:11155436-11155501:1:exon
so has part: feature:11161721-11161828:1:exon
so has part: feature:11165868-11166020:1:exon
so has part: feature:11169267-11169469:1:exon
so has part: feature:11172716-11172815:1:exon
so has part: feature:11176498-11176605:1:exon
so has part: feature:11179977-11179992:1:exon
so has part: feature:11182838-11182880:1:exon
so has part: feature:11185129-11188053:1:exon

position:11110942:1
position: 11110942
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11110942-11111605:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:11155436-11155501:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:11161721-11161828:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:11165868-11166020:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:11169267-11169469:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:11172716-11172815:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:11176498-11176605:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:11179977-11179992:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:11182838-11182880:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:11185129-11188053:1:exon

position:11185129:1
position: 11185129
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

JAM2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61853
gene: JAM2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: junctional adhesion molecule B isoform X1
translation: MARRSRHRLLLLVLRYLVVALGYHKAYGFSAPKDQQVVTAVEYQEAILACKTPKKTVSSRLEWKKLGRSVSFVYYQQTLQGDFKNRAEMIDFNIRIKNVTRSDAGKYRCEVSAPSEQGQNLEEDTVTLEVLVAPAVPSCEVPSSALSGTVVELRCQDKEGNPAPEYTWFKDGIRLLENPRLGSQSTNSSYTMNTKTGTLQFNTVSKLDTGEYSCEARNSVGYRRCPGKRMQVDDLNISGIIAAVVVVALVISVCGLGVCYAQRKGYFSKETSFQKSNSSSKATTMSENDFKHTKSFII
SIO_010081: JAM2
subclass of: SO_0000673
so part of: JAM2
location: join(11111539..11111605,11155436..11155501,11161721..11161828,11165868..11166020,11169267..11169469,11172716..11172815,11176498..11176605,11179977..11179992,11182838..11182880,11185129..11185161)
location: region:11111539-11185161:1
so has part: feature:11111539-11111605:1:exon
so has part: feature:11155436-11155501:1:exon
so has part: feature:11161721-11161828:1:exon
so has part: feature:11165868-11166020:1:exon
so has part: feature:11169267-11169469:1:exon
so has part: feature:11172716-11172815:1:exon
so has part: feature:11176498-11176605:1:exon
so has part: feature:11179977-11179992:1:exon
so has part: feature:11182838-11182880:1:exon
so has part: feature:11185129-11185161:1:exon

XP_003263846.1
type: Protein
SIO_000068: ncbiprotein

position:11111539:1
position: 11111539
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11185161:1
position: 11185161
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11111539-11111605:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:11155436-11155501:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:11161721-11161828:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:11165868-11166020:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:11169267-11169469:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:11172716-11172815:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:11176498-11176605:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:11179977-11179992:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:11182838-11182880:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:11185129-11185161:1:exon

JAM2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61853
gene: JAM2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: junctional adhesion molecule B isoform X2
translation: MARRSRHRLLLLVLRYLVVALGYHKAYGFSAPKDQQVVTAVEYQEAILACKTPKKTVSSRLEWKKLGRSVSFVYYQQTLQGDFKNRAEMIDFNIRIKNVTRSDAGKYRCEVSAPSEQGQNLEEDTVTLEVLVAPAVPSCEVPSSALSGTVVELRCQDKEGNPAPEYTWFKDGIRLLENPRLGSQSTNSSYTMNTKTGTLQFNTVSKLDTGEYSCEARNSVGYRRCPGKRMQVDDLNISGIIAAVVVVALVISVCGLGVCYAQRKGYFSKETSFQKSNSSSKATTMSENVQWLTPVIPALWKATAGGSRGQEF
SIO_010081: JAM2
subclass of: SO_0000673
so part of: JAM2
location: join(11111539..11111605,11155436..11155501,11161721..11161828,11165868..11166020,11169267..11169469,11172716..11172815,11176498..11176605,11179977..11179992,11182838..11182880,11184723..11184797)
location: region:11111539-11184797:1
so has part: feature:11111539-11111605:1:exon
so has part: feature:11155436-11155501:1:exon
so has part: feature:11161721-11161828:1:exon
so has part: feature:11165868-11166020:1:exon
so has part: feature:11169267-11169469:1:exon
so has part: feature:11172716-11172815:1:exon
so has part: feature:11176498-11176605:1:exon
so has part: feature:11179977-11179992:1:exon
so has part: feature:11182838-11182880:1:exon
so has part: feature:11184723-11184797:1:exon

XP_003263848.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11111539-11111605:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:11155436-11155501:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:11161721-11161828:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:11165868-11166020:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:11169267-11169469:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:11172716-11172815:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:11176498-11176605:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:11179977-11179992:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:11182838-11182880:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:11184723-11184797:1:exon

ATP5PF
type: Gene
subclass of: SO_0000704
RO_0002162: 61853
gene: ATP5PF
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(11194996..11206452)
location: region:11194996-11206452:-1
so has part: feature:11194996-11206452:-1:exon
subclass of: SO_0000010

100586928
type: Gene
SIO_000068: ncbigene

position:11194996:-1
position: 11194996
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11206452:-1
position: 11206452
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11194996-11206452:-1:exon

ATP5PF
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 61853
gene: ATP5PF
product: ATP synthase peripheral stalk subunit F6, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 mRNAs, 211 ESTs, 9 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XM_003263803.2
SIO_010081: ATP5PF
subclass of: SO_0000673
so part of: ATP5PF
location: complement(join(11194996..11195173,11195722..11195846,11200129..11200299,11205768..11206452))
location: region:11194996-11206452:-1
so has part: feature:11205768-11206452:-1:exon
so has part: feature:11200129-11200299:-1:exon
so has part: feature:11195722-11195846:-1:exon
so has part: feature:11194996-11195173:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:11205768-11206452:-1:exon

position:11205768:-1
position: 11205768
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:11200129-11200299:-1:exon

position:11200129:-1
position: 11200129
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11200299:-1
position: 11200299
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:11195722-11195846:-1:exon

position:11195722:-1
position: 11195722
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11195846:-1
position: 11195846
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:11194996-11195173:-1:exon

position:11195173:-1
position: 11195173
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

ATP5PF
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 61853
gene: ATP5PF
product: ATP synthase peripheral stalk subunit F6, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 mRNAs, 198 ESTs, 10 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XM_003263805.3
SIO_010081: ATP5PF
subclass of: SO_0000673
so part of: ATP5PF
location: complement(join(11194996..11195173,11195722..11195846,11200129..11200299,11205718..11206428))
location: region:11194996-11206428:-1
so has part: feature:11205718-11206428:-1:exon
so has part: feature:11200129-11200299:-1:exon
so has part: feature:11195722-11195846:-1:exon
so has part: feature:11194996-11195173:-1:exon

position:11206428:-1
position: 11206428
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11205718-11206428:-1:exon

position:11205718:-1
position: 11205718
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:11200129-11200299:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:11195722-11195846:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:11194996-11195173:-1:exon

ATP5PF
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 61853
gene: ATP5PF
product: ATP synthase peripheral stalk subunit F6, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 mRNAs, 399 ESTs, 9 Proteins, and 96% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XM_030806383.1
SIO_010081: ATP5PF
subclass of: SO_0000673
so part of: ATP5PF
location: complement(join(11194996..11195173,11195722..11195846,11200129..11200299,11205632..11206428))
location: region:11194996-11206428:-1
so has part: feature:11205632-11206428:-1:exon
so has part: feature:11200129-11200299:-1:exon
so has part: feature:11195722-11195846:-1:exon
so has part: feature:11194996-11195173:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:11205632-11206428:-1:exon

position:11205632:-1
position: 11205632
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:11200129-11200299:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:11195722-11195846:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:11194996-11195173:-1:exon

ATP5PF
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61853
gene: ATP5PF
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ATP synthase-coupling factor 6, mitochondrial isoform X1
translation: MHCDGGIIMILQRLFRFSSVIRSAVSVHLRRNIGVTAVAFNKELDPIQKLFVDKIREYKSKRQTSGGPVDAGPEYQQDVERELFKLKQMFGKADMNTFPTFKFEDPKFEVLEKPQA
SIO_010081: ATP5PF
subclass of: SO_0000673
so part of: ATP5PF
location: complement(join(11195136..11195173,11195722..11195846,11200129..11200299,11205718..11205734))
location: region:11195136-11205734:-1
so has part: feature:11205718-11205734:-1:exon
so has part: feature:11200129-11200299:-1:exon
so has part: feature:11195722-11195846:-1:exon
so has part: feature:11195136-11195173:-1:exon

XP_003263853.1
type: Protein
SIO_000068: ncbiprotein

position:11195136:-1
position: 11195136
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11205734:-1
position: 11205734
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11205718-11205734:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:11200129-11200299:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:11195722-11195846:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:11195136-11195173:-1:exon

ATP5PF
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61853
gene: ATP5PF
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ATP synthase-coupling factor 6, mitochondrial isoform X2
translation: MILQRLFRFSSVIRSAVSVHLRRNIGVTAVAFNKELDPIQKLFVDKIREYKSKRQTSGGPVDAGPEYQQDVERELFKLKQMFGKADMNTFPTFKFEDPKFEVLEKPQA
SIO_010081: ATP5PF
subclass of: SO_0000673
so part of: ATP5PF
location: complement(join(11195136..11195173,11195722..11195846,11200129..11200292))
location: region:11195136-11200292:-1
so has part: feature:11200129-11200292:-1:exon
so has part: feature:11195722-11195846:-1:exon
so has part: feature:11195136-11195173:-1:exon

XP_030662243.1
type: Protein
SIO_000068: ncbiprotein

position:11200292:-1
position: 11200292
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11200129-11200292:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:11195722-11195846:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:11195136-11195173:-1:exon

ATP5PF
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61853
gene: ATP5PF
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ATP synthase-coupling factor 6, mitochondrial isoform X2
translation: MILQRLFRFSSVIRSAVSVHLRRNIGVTAVAFNKELDPIQKLFVDKIREYKSKRQTSGGPVDAGPEYQQDVERELFKLKQMFGKADMNTFPTFKFEDPKFEVLEKPQA
SIO_010081: ATP5PF
subclass of: SO_0000673
so part of: ATP5PF
location: complement(join(11195136..11195173,11195722..11195846,11200129..11200292))
location: region:11195136-11200292:-1
so has part: feature:11200129-11200292:-1:exon
so has part: feature:11195722-11195846:-1:exon
so has part: feature:11195136-11195173:-1:exon

XP_003263851.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11200129-11200292:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:11195722-11195846:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:11195136-11195173:-1:exon

GABPA
type: Gene
subclass of: SO_0000704
RO_0002162: 61853
gene: GABPA
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 11205726..11240853
location: region:11205726-11240853:1
so has part: feature:11205726-11240853:1:exon
subclass of: SO_0000010

100585028
type: Gene
SIO_000068: ncbigene

position:11205726:1
position: 11205726
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11240853:1
position: 11240853
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11205726-11240853:1:exon

GABPA
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 61853
gene: GABPA
product: GA binding protein transcription factor subunit alpha, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 58 ESTs, 17 Proteins, and 97% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XM_003263797.2
SIO_010081: GABPA
subclass of: SO_0000673
so part of: GABPA
location: join(11205726..11205849,11212521..11212623,11216167..11216311,11220003..11220087,11222919..11223164,11228937..11229131,11233394..11233447,11235302..11235442,11235687..11235879,11240101..11240853)
location: region:11205726-11240853:1
so has part: feature:11205726-11205849:1:exon
so has part: feature:11212521-11212623:1:exon
so has part: feature:11216167-11216311:1:exon
so has part: feature:11220003-11220087:1:exon
so has part: feature:11222919-11223164:1:exon
so has part: feature:11228937-11229131:1:exon
so has part: feature:11233394-11233447:1:exon
so has part: feature:11235302-11235442:1:exon
so has part: feature:11235687-11235879:1:exon
so has part: feature:11240101-11240853:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:11205726-11205849:1:exon

position:11205849:1
position: 11205849
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:11212521-11212623:1:exon

position:11212521:1
position: 11212521
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11212623:1
position: 11212623
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:11216167-11216311:1:exon

position:11216167:1
position: 11216167
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11216311:1
position: 11216311
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:11220003-11220087:1:exon

position:11220003:1
position: 11220003
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11220087:1
position: 11220087
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:11222919-11223164:1:exon

position:11222919:1
position: 11222919
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11223164:1
position: 11223164
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:11228937-11229131:1:exon

position:11228937:1
position: 11228937
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11229131:1
position: 11229131
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:11233394-11233447:1:exon

position:11233394:1
position: 11233394
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11233447:1
position: 11233447
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:11235302-11235442:1:exon

position:11235302:1
position: 11235302
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11235442:1
position: 11235442
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:11235687-11235879:1:exon

position:11235687:1
position: 11235687
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11235879:1
position: 11235879
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:11240101-11240853:1:exon

position:11240101:1
position: 11240101
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

GABPA
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 61853
gene: GABPA
product: GA binding protein transcription factor subunit alpha, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 mRNAs, 76 ESTs, 17 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XM_003263796.3
SIO_010081: GABPA
subclass of: SO_0000673
so part of: GABPA
location: join(11206000..11206357,11212521..11212623,11216167..11216311,11220003..11220087,11222919..11223164,11228937..11229131,11233394..11233447,11235302..11235442,11235687..11235879,11240101..11240853)
location: region:11206000-11240853:1
so has part: feature:11206000-11206357:1:exon
so has part: feature:11212521-11212623:1:exon
so has part: feature:11216167-11216311:1:exon
so has part: feature:11220003-11220087:1:exon
so has part: feature:11222919-11223164:1:exon
so has part: feature:11228937-11229131:1:exon
so has part: feature:11233394-11233447:1:exon
so has part: feature:11235302-11235442:1:exon
so has part: feature:11235687-11235879:1:exon
so has part: feature:11240101-11240853:1:exon

position:11206000:1
position: 11206000
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11206000-11206357:1:exon

position:11206357:1
position: 11206357
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:11212521-11212623:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:11216167-11216311:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:11220003-11220087:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:11222919-11223164:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:11228937-11229131:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:11233394-11233447:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:11235302-11235442:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:11235687-11235879:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:11240101-11240853:1:exon

GABPA
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 61853
gene: GABPA
product: GA binding protein transcription factor subunit alpha, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 53 ESTs, 17 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XM_030806381.1
SIO_010081: GABPA
subclass of: SO_0000673
so part of: GABPA
location: join(11206291..11206357,11212545..11212623,11216167..11216311,11220003..11220087,11222919..11223164,11228937..11229131,11233394..11233447,11235302..11235442,11235687..11235879,11240101..11240853)
location: region:11206291-11240853:1
so has part: feature:11206291-11206357:1:exon
so has part: feature:11212545-11212623:1:exon
so has part: feature:11216167-11216311:1:exon
so has part: feature:11220003-11220087:1:exon
so has part: feature:11222919-11223164:1:exon
so has part: feature:11228937-11229131:1:exon
so has part: feature:11233394-11233447:1:exon
so has part: feature:11235302-11235442:1:exon
so has part: feature:11235687-11235879:1:exon
so has part: feature:11240101-11240853:1:exon

position:11206291:1
position: 11206291
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11206291-11206357:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:11212545-11212623:1:exon

position:11212545:1
position: 11212545
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:11216167-11216311:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:11220003-11220087:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:11222919-11223164:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:11228937-11229131:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:11233394-11233447:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:11235302-11235442:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:11235687-11235879:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:11240101-11240853:1:exon

GABPA
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 61853
gene: GABPA
product: GA binding protein transcription factor subunit alpha, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 48 ESTs, 17 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_030806382.1
SIO_010081: GABPA
subclass of: SO_0000673
so part of: GABPA
location: join(11210847..11210976,11212521..11212623,11216167..11216311,11220003..11220087,11222919..11223164,11228937..11229131,11233394..11233447,11235302..11235442,11235687..11235879,11240101..11240853)
location: region:11210847-11240853:1
so has part: feature:11210847-11210976:1:exon
so has part: feature:11212521-11212623:1:exon
so has part: feature:11216167-11216311:1:exon
so has part: feature:11220003-11220087:1:exon
so has part: feature:11222919-11223164:1:exon
so has part: feature:11228937-11229131:1:exon
so has part: feature:11233394-11233447:1:exon
so has part: feature:11235302-11235442:1:exon
so has part: feature:11235687-11235879:1:exon
so has part: feature:11240101-11240853:1:exon

position:11210847:1
position: 11210847
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11210847-11210976:1:exon

position:11210976:1
position: 11210976
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:11212521-11212623:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:11216167-11216311:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:11220003-11220087:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:11222919-11223164:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:11228937-11229131:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:11233394-11233447:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:11235302-11235442:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:11235687-11235879:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:11240101-11240853:1:exon

GABPA
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61853
gene: GABPA
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: GA-binding protein alpha chain
translation: MTKREAEELIEIEIDGTEKAECTEESIVEQTYAPAECVSQAIDINEPIGNLKKLLEPRLQCSLDAHEICLQDIQLDPERSLFDQGVKTDGTVQLSVQVISYQGIEPKLNILEIVKPADTVEVVIDPDAHHAESEAHLVEEAQVITLDGTKHITTISDETSEQVTRWAAALEGYRKEQERLGIPYDPIQWSTDQVLHWVVWVMKEFSMTDIDLTTLNISGRELCSLNQEDFFQRVPRGEILWSHLELLRKYVLASQEQQMNEIVTIDQPVQIIPASVQSATPTTIKVINSSAKAAKVQRAPRISGEDRSSPGNRTGNNGQIQLWQFLLELLTDKDARDCISWVGDEGEFKLNQPELVAQKWGQRKNKPTMNYEKLSRALRYYYDGDMICKVQGKRFVYKFVCDLKTLIGYSAAELNRLVTECEQKKLAKMQLHGIAQPVTAVALATASLQTEKDN
SIO_010081: GABPA
subclass of: SO_0000673
so part of: GABPA
location: join(11212547..11212623,11216167..11216311,11220003..11220087,11222919..11223164,11228937..11229131,11233394..11233447,11235302..11235442,11235687..11235879,11240101..11240329)
location: region:11212547-11240329:1
so has part: feature:11212547-11212623:1:exon
so has part: feature:11216167-11216311:1:exon
so has part: feature:11220003-11220087:1:exon
so has part: feature:11222919-11223164:1:exon
so has part: feature:11228937-11229131:1:exon
so has part: feature:11233394-11233447:1:exon
so has part: feature:11235302-11235442:1:exon
so has part: feature:11235687-11235879:1:exon
so has part: feature:11240101-11240329:1:exon

XP_030662241.1
type: Protein
SIO_000068: ncbiprotein

position:11212547:1
position: 11212547
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11240329:1
position: 11240329
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11212547-11212623:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:11216167-11216311:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:11220003-11220087:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:11222919-11223164:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:11228937-11229131:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:11233394-11233447:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:11235302-11235442:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:11235687-11235879:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:11240101-11240329:1:exon

GABPA
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61853
gene: GABPA
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: GA-binding protein alpha chain
translation: MTKREAEELIEIEIDGTEKAECTEESIVEQTYAPAECVSQAIDINEPIGNLKKLLEPRLQCSLDAHEICLQDIQLDPERSLFDQGVKTDGTVQLSVQVISYQGIEPKLNILEIVKPADTVEVVIDPDAHHAESEAHLVEEAQVITLDGTKHITTISDETSEQVTRWAAALEGYRKEQERLGIPYDPIQWSTDQVLHWVVWVMKEFSMTDIDLTTLNISGRELCSLNQEDFFQRVPRGEILWSHLELLRKYVLASQEQQMNEIVTIDQPVQIIPASVQSATPTTIKVINSSAKAAKVQRAPRISGEDRSSPGNRTGNNGQIQLWQFLLELLTDKDARDCISWVGDEGEFKLNQPELVAQKWGQRKNKPTMNYEKLSRALRYYYDGDMICKVQGKRFVYKFVCDLKTLIGYSAAELNRLVTECEQKKLAKMQLHGIAQPVTAVALATASLQTEKDN
SIO_010081: GABPA
subclass of: SO_0000673
so part of: GABPA
location: join(11212547..11212623,11216167..11216311,11220003..11220087,11222919..11223164,11228937..11229131,11233394..11233447,11235302..11235442,11235687..11235879,11240101..11240329)
location: region:11212547-11240329:1
so has part: feature:11212547-11212623:1:exon
so has part: feature:11216167-11216311:1:exon
so has part: feature:11220003-11220087:1:exon
so has part: feature:11222919-11223164:1:exon
so has part: feature:11228937-11229131:1:exon
so has part: feature:11233394-11233447:1:exon
so has part: feature:11235302-11235442:1:exon
so has part: feature:11235687-11235879:1:exon
so has part: feature:11240101-11240329:1:exon

XP_030662242.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11212547-11212623:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:11216167-11216311:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:11220003-11220087:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:11222919-11223164:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:11228937-11229131:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:11233394-11233447:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:11235302-11235442:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:11235687-11235879:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:11240101-11240329:1:exon

GABPA
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61853
gene: GABPA
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: GA-binding protein alpha chain
translation: MTKREAEELIEIEIDGTEKAECTEESIVEQTYAPAECVSQAIDINEPIGNLKKLLEPRLQCSLDAHEICLQDIQLDPERSLFDQGVKTDGTVQLSVQVISYQGIEPKLNILEIVKPADTVEVVIDPDAHHAESEAHLVEEAQVITLDGTKHITTISDETSEQVTRWAAALEGYRKEQERLGIPYDPIQWSTDQVLHWVVWVMKEFSMTDIDLTTLNISGRELCSLNQEDFFQRVPRGEILWSHLELLRKYVLASQEQQMNEIVTIDQPVQIIPASVQSATPTTIKVINSSAKAAKVQRAPRISGEDRSSPGNRTGNNGQIQLWQFLLELLTDKDARDCISWVGDEGEFKLNQPELVAQKWGQRKNKPTMNYEKLSRALRYYYDGDMICKVQGKRFVYKFVCDLKTLIGYSAAELNRLVTECEQKKLAKMQLHGIAQPVTAVALATASLQTEKDN
SIO_010081: GABPA
subclass of: SO_0000673
so part of: GABPA
location: join(11212547..11212623,11216167..11216311,11220003..11220087,11222919..11223164,11228937..11229131,11233394..11233447,11235302..11235442,11235687..11235879,11240101..11240329)
location: region:11212547-11240329:1
so has part: feature:11212547-11212623:1:exon
so has part: feature:11216167-11216311:1:exon
so has part: feature:11220003-11220087:1:exon
so has part: feature:11222919-11223164:1:exon
so has part: feature:11228937-11229131:1:exon
so has part: feature:11233394-11233447:1:exon
so has part: feature:11235302-11235442:1:exon
so has part: feature:11235687-11235879:1:exon
so has part: feature:11240101-11240329:1:exon

XP_003263844.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11212547-11212623:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:11216167-11216311:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:11220003-11220087:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:11222919-11223164:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:11228937-11229131:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:11233394-11233447:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:11235302-11235442:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:11235687-11235879:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:11240101-11240329:1:exon

GABPA
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61853
gene: GABPA
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: GA-binding protein alpha chain
translation: MTKREAEELIEIEIDGTEKAECTEESIVEQTYAPAECVSQAIDINEPIGNLKKLLEPRLQCSLDAHEICLQDIQLDPERSLFDQGVKTDGTVQLSVQVISYQGIEPKLNILEIVKPADTVEVVIDPDAHHAESEAHLVEEAQVITLDGTKHITTISDETSEQVTRWAAALEGYRKEQERLGIPYDPIQWSTDQVLHWVVWVMKEFSMTDIDLTTLNISGRELCSLNQEDFFQRVPRGEILWSHLELLRKYVLASQEQQMNEIVTIDQPVQIIPASVQSATPTTIKVINSSAKAAKVQRAPRISGEDRSSPGNRTGNNGQIQLWQFLLELLTDKDARDCISWVGDEGEFKLNQPELVAQKWGQRKNKPTMNYEKLSRALRYYYDGDMICKVQGKRFVYKFVCDLKTLIGYSAAELNRLVTECEQKKLAKMQLHGIAQPVTAVALATASLQTEKDN
SIO_010081: GABPA
subclass of: SO_0000673
so part of: GABPA
location: join(11212547..11212623,11216167..11216311,11220003..11220087,11222919..11223164,11228937..11229131,11233394..11233447,11235302..11235442,11235687..11235879,11240101..11240329)
location: region:11212547-11240329:1
so has part: feature:11212547-11212623:1:exon
so has part: feature:11216167-11216311:1:exon
so has part: feature:11220003-11220087:1:exon
so has part: feature:11222919-11223164:1:exon
so has part: feature:11228937-11229131:1:exon
so has part: feature:11233394-11233447:1:exon
so has part: feature:11235302-11235442:1:exon
so has part: feature:11235687-11235879:1:exon
so has part: feature:11240101-11240329:1:exon

XP_003263845.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11212547-11212623:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:11216167-11216311:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:11220003-11220087:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:11222919-11223164:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:11228937-11229131:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:11233394-11233447:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:11235302-11235442:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:11235687-11235879:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:11240101-11240329:1:exon

LOC105738701
type: Gene
subclass of: SO_0000704
RO_0002162: 61853
gene: LOC105738701
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: complement(11234017..11235205)
location: region:11234017-11235205:-1
so has part: feature:11234017-11235205:-1:exon

105738701
type: Gene
SIO_000068: ncbigene

position:11234017:-1
position: 11234017
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11235205:-1
position: 11235205
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11234017-11235205:-1:exon

LOC105738701
type: Exon
subclass of: SO_0000147
RO_0002162: 61853
gene: LOC105738701
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins
pseudo: true
SIO_010081: LOC105738701
subclass of: SO_0000673
so part of: LOC105738701
location: complement(11234017..11234409)
location: region:11234017-11234409:-1
so has part: feature:11234017-11234409:-1:exon

position:11234409:-1
position: 11234409
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11234017-11234409:-1:exon

LOC105738701
type: Exon
subclass of: SO_0000147
RO_0002162: 61853
gene: LOC105738701
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins
pseudo: true
SIO_010081: LOC105738701
subclass of: SO_0000673
so part of: LOC105738701
location: complement(11235181..11235205)
location: region:11235181-11235205:-1
so has part: feature:11235181-11235205:-1:exon

position:11235181:-1
position: 11235181
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11235181-11235205:-1:exon

APP
type: Gene
subclass of: SO_0000704
RO_0002162: 61853
gene: APP
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(11354048..11641667)
location: region:11354048-11641667:-1
so has part: feature:11354048-11641667:-1:exon
subclass of: SO_0000010

100587944
type: Gene
SIO_000068: ncbigene

position:11354048:-1
position: 11354048
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11641667:-1
position: 11641667
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11354048-11641667:-1:exon

APP
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 61853
gene: APP
product: amyloid beta precursor protein, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 mRNAs, 2349 ESTs, 15 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XM_030806169.1
SIO_010081: APP
subclass of: SO_0000673
so part of: APP
location: complement(join(11354048..11355270,11365135..11365281,11370983..11371083,11378364..11378417,11385093..11385314,11422006..11422105,11422980..11423108,11442424..11442582,11443314..11443388,11450026..11450159,11490113..11490312,11518833..11519026,11521068..11521180,11558886..11559015,11581510..11581677,11641450..11641667))
location: region:11354048-11641667:-1
so has part: feature:11641450-11641667:-1:exon
so has part: feature:11581510-11581677:-1:exon
so has part: feature:11558886-11559015:-1:exon
so has part: feature:11521068-11521180:-1:exon
so has part: feature:11518833-11519026:-1:exon
so has part: feature:11490113-11490312:-1:exon
so has part: feature:11450026-11450159:-1:exon
so has part: feature:11443314-11443388:-1:exon
so has part: feature:11442424-11442582:-1:exon
so has part: feature:11422980-11423108:-1:exon
so has part: feature:11422006-11422105:-1:exon
so has part: feature:11385093-11385314:-1:exon
so has part: feature:11378364-11378417:-1:exon
so has part: feature:11370983-11371083:-1:exon
so has part: feature:11365135-11365281:-1:exon
so has part: feature:11354048-11355270:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:11641450-11641667:-1:exon

position:11641450:-1
position: 11641450
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:11581510-11581677:-1:exon

position:11581510:-1
position: 11581510
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11581677:-1
position: 11581677
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:11558886-11559015:-1:exon

position:11558886:-1
position: 11558886
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11559015:-1
position: 11559015
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:11521068-11521180:-1:exon

position:11521068:-1
position: 11521068
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11521180:-1
position: 11521180
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:11518833-11519026:-1:exon

position:11518833:-1
position: 11518833
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11519026:-1
position: 11519026
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:11490113-11490312:-1:exon

position:11490113:-1
position: 11490113
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11490312:-1
position: 11490312
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:11450026-11450159:-1:exon

position:11450026:-1
position: 11450026
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11450159:-1
position: 11450159
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:11443314-11443388:-1:exon

position:11443314:-1
position: 11443314
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11443388:-1
position: 11443388
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:11442424-11442582:-1:exon

position:11442424:-1
position: 11442424
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11442582:-1
position: 11442582
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:11422980-11423108:-1:exon

position:11422980:-1
position: 11422980
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11423108:-1
position: 11423108
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:11422006-11422105:-1:exon

position:11422006:-1
position: 11422006
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11422105:-1
position: 11422105
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:11385093-11385314:-1:exon

position:11385093:-1
position: 11385093
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11385314:-1
position: 11385314
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:11378364-11378417:-1:exon

position:11378364:-1
position: 11378364
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11378417:-1
position: 11378417
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:11370983-11371083:-1:exon

position:11370983:-1
position: 11370983
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11371083:-1
position: 11371083
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:11365135-11365281:-1:exon

position:11365135:-1
position: 11365135
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11365281:-1
position: 11365281
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:11354048-11355270:-1:exon

position:11355270:-1
position: 11355270
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

APP
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 61853
gene: APP
product: amyloid beta precursor protein, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 15 mRNAs, 2399 ESTs, 27 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XM_030806168.1
SIO_010081: APP
subclass of: SO_0000673
so part of: APP
location: complement(join(11354048..11355270,11365135..11365281,11370983..11371083,11378364..11378417,11385093..11385314,11422006..11422105,11422980..11423108,11442424..11442582,11443314..11443388,11450026..11450159,11468339..11468506,11490113..11490312,11518833..11519026,11521068..11521180,11558886..11559015,11581510..11581677,11641450..11641667))
location: region:11354048-11641667:-1
so has part: feature:11641450-11641667:-1:exon
so has part: feature:11581510-11581677:-1:exon
so has part: feature:11558886-11559015:-1:exon
so has part: feature:11521068-11521180:-1:exon
so has part: feature:11518833-11519026:-1:exon
so has part: feature:11490113-11490312:-1:exon
so has part: feature:11468339-11468506:-1:exon
so has part: feature:11450026-11450159:-1:exon
so has part: feature:11443314-11443388:-1:exon
so has part: feature:11442424-11442582:-1:exon
so has part: feature:11422980-11423108:-1:exon
so has part: feature:11422006-11422105:-1:exon
so has part: feature:11385093-11385314:-1:exon
so has part: feature:11378364-11378417:-1:exon
so has part: feature:11370983-11371083:-1:exon
so has part: feature:11365135-11365281:-1:exon
so has part: feature:11354048-11355270:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:11641450-11641667:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:11581510-11581677:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:11558886-11559015:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:11521068-11521180:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:11518833-11519026:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:11490113-11490312:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:11468339-11468506:-1:exon

position:11468339:-1
position: 11468339
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11468506:-1
position: 11468506
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:11450026-11450159:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:11443314-11443388:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:11442424-11442582:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:11422980-11423108:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:11422006-11422105:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:11385093-11385314:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:11378364-11378417:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:11370983-11371083:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:11365135-11365281:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:11354048-11355270:-1:exon

APP
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 61853
gene: APP
product: amyloid beta precursor protein, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 15 mRNAs, 2417 ESTs, 27 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XM_030806167.1
SIO_010081: APP
subclass of: SO_0000673
so part of: APP
location: complement(join(11354048..11355270,11365135..11365281,11370983..11371083,11378364..11378417,11385093..11385314,11422006..11422105,11422980..11423108,11442424..11442582,11443314..11443388,11450026..11450159,11465376..11465432,11468339..11468506,11490113..11490312,11518833..11519026,11521068..11521180,11558886..11559015,11581510..11581677,11641450..11641667))
location: region:11354048-11641667:-1
so has part: feature:11641450-11641667:-1:exon
so has part: feature:11581510-11581677:-1:exon
so has part: feature:11558886-11559015:-1:exon
so has part: feature:11521068-11521180:-1:exon
so has part: feature:11518833-11519026:-1:exon
so has part: feature:11490113-11490312:-1:exon
so has part: feature:11468339-11468506:-1:exon
so has part: feature:11465376-11465432:-1:exon
so has part: feature:11450026-11450159:-1:exon
so has part: feature:11443314-11443388:-1:exon
so has part: feature:11442424-11442582:-1:exon
so has part: feature:11422980-11423108:-1:exon
so has part: feature:11422006-11422105:-1:exon
so has part: feature:11385093-11385314:-1:exon
so has part: feature:11378364-11378417:-1:exon
so has part: feature:11370983-11371083:-1:exon
so has part: feature:11365135-11365281:-1:exon
so has part: feature:11354048-11355270:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:11641450-11641667:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:11581510-11581677:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:11558886-11559015:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:11521068-11521180:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:11518833-11519026:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:11490113-11490312:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:11468339-11468506:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:11465376-11465432:-1:exon

position:11465376:-1
position: 11465376
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11465432:-1
position: 11465432
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:11450026-11450159:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:11443314-11443388:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:11442424-11442582:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:11422980-11423108:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:11422006-11422105:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:11385093-11385314:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:11378364-11378417:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:11370983-11371083:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:11365135-11365281:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:11354048-11355270:-1:exon

APP
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61853
gene: APP
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: amyloid-beta precursor protein isoform X3
translation: MLPGLALLLLAAWTARALEVPTDGNAGLLAEPQIAMFCGRLNMHMNVQNGKWDSDPSGTKTCIDTKEGILQYCQEVYPELQITNVVEANQPVTIQNWCKRGRKQCKTHPHFVIPYRCLVGEFVSDALLVPDKCKFLHQERMDVCETHLHWHTVAKETCSEKSTNLHDYGMLLPCGIDKFRGVEFVCCPLAEESDNVDSADAEEDDSDVWWGGADTDYADGSEDKVVEVAEEEEVAEVEEEADDDEDDEDGDEVEEEAEEPYEEATERTTSIATTTTTTTESVEEVVRVPTTAASTPDAVDKYLETPGDENEHAHFQKAKERLEAKHRERMSQVMREWEEAERQAKNLPKADKKAVIQHFQEKVESLEQEAANERQQLVETHMARVEAMLNDRRRLALENYITALQAVPPRPRHVFNMLKKYVRAEQKDRQHTLKHFEHVRMVDPKKAAQIRSQVMTHLRVIYERMNQSLSLLYNVPAVAEEIQDEVDELLQKEQNYSDDVLANMISEPRISYGNDALMPSLTETKTTVELLPVNGEFSLDDLQPWHSFGADSVPANTENEVEPVDARPAADRGLTTRPGSGLTNIKTEEISEVKMDAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLMVGGVVIATVIVITLVMLKKKQYTSIHHGVVEVDAAVTPEERHLSKMQQNGYENPTYKFFEQMQN
SIO_010081: APP
subclass of: SO_0000673
so part of: APP
location: complement(join(11355169..11355270,11365135..11365281,11370983..11371083,11378364..11378417,11385093..11385314,11422006..11422105,11422980..11423108,11442424..11442582,11443314..11443388,11450026..11450159,11490113..11490312,11518833..11519026,11521068..11521180,11558886..11559015,11581510..11581677,11641450..11641506))
location: region:11355169-11641506:-1
so has part: feature:11641450-11641506:-1:exon
so has part: feature:11581510-11581677:-1:exon
so has part: feature:11558886-11559015:-1:exon
so has part: feature:11521068-11521180:-1:exon
so has part: feature:11518833-11519026:-1:exon
so has part: feature:11490113-11490312:-1:exon
so has part: feature:11450026-11450159:-1:exon
so has part: feature:11443314-11443388:-1:exon
so has part: feature:11442424-11442582:-1:exon
so has part: feature:11422980-11423108:-1:exon
so has part: feature:11422006-11422105:-1:exon
so has part: feature:11385093-11385314:-1:exon
so has part: feature:11378364-11378417:-1:exon
so has part: feature:11370983-11371083:-1:exon
so has part: feature:11365135-11365281:-1:exon
so has part: feature:11355169-11355270:-1:exon

XP_030662029.1
type: Protein
SIO_000068: ncbiprotein

position:11355169:-1
position: 11355169
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11641506:-1
position: 11641506
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11641450-11641506:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:11581510-11581677:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:11558886-11559015:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:11521068-11521180:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:11518833-11519026:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:11490113-11490312:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:11450026-11450159:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:11443314-11443388:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:11442424-11442582:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:11422980-11423108:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:11422006-11422105:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:11385093-11385314:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:11378364-11378417:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:11370983-11371083:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:11365135-11365281:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:11355169-11355270:-1:exon

APP
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61853
gene: APP
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: amyloid-beta precursor protein isoform X2
translation: MLPGLALLLLAAWTARALEVPTDGNAGLLAEPQIAMFCGRLNMHMNVQNGKWDSDPSGTKTCIDTKEGILQYCQEVYPELQITNVVEANQPVTIQNWCKRGRKQCKTHPHFVIPYRCLVGEFVSDALLVPDKCKFLHQERMDVCETHLHWHTVAKETCSEKSTNLHDYGMLLPCGIDKFRGVEFVCCPLAEESDNVDSADAEEDDSDVWWGGADTDYADGSEDKVVEVAEEEEVAEVEEEADDDEDDEDGDEVEEEAEEPYEEATERTTSIATTTTTTTESVEEVVREVCSEQAETGPCRAMISRWYFDVTEGKCAPFFYGGCGGNRNNFDTEEYCMAVCGSVIPTTAASTPDAVDKYLETPGDENEHAHFQKAKERLEAKHRERMSQVMREWEEAERQAKNLPKADKKAVIQHFQEKVESLEQEAANERQQLVETHMARVEAMLNDRRRLALENYITALQAVPPRPRHVFNMLKKYVRAEQKDRQHTLKHFEHVRMVDPKKAAQIRSQVMTHLRVIYERMNQSLSLLYNVPAVAEEIQDEVDELLQKEQNYSDDVLANMISEPRISYGNDALMPSLTETKTTVELLPVNGEFSLDDLQPWHSFGADSVPANTENEVEPVDARPAADRGLTTRPGSGLTNIKTEEISEVKMDAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLMVGGVVIATVIVITLVMLKKKQYTSIHHGVVEVDAAVTPEERHLSKMQQNGYENPTYKFFEQMQN
SIO_010081: APP
subclass of: SO_0000673
so part of: APP
location: complement(join(11355169..11355270,11365135..11365281,11370983..11371083,11378364..11378417,11385093..11385314,11422006..11422105,11422980..11423108,11442424..11442582,11443314..11443388,11450026..11450159,11468339..11468506,11490113..11490312,11518833..11519026,11521068..11521180,11558886..11559015,11581510..11581677,11641450..11641506))
location: region:11355169-11641506:-1
so has part: feature:11641450-11641506:-1:exon
so has part: feature:11581510-11581677:-1:exon
so has part: feature:11558886-11559015:-1:exon
so has part: feature:11521068-11521180:-1:exon
so has part: feature:11518833-11519026:-1:exon
so has part: feature:11490113-11490312:-1:exon
so has part: feature:11468339-11468506:-1:exon
so has part: feature:11450026-11450159:-1:exon
so has part: feature:11443314-11443388:-1:exon
so has part: feature:11442424-11442582:-1:exon
so has part: feature:11422980-11423108:-1:exon
so has part: feature:11422006-11422105:-1:exon
so has part: feature:11385093-11385314:-1:exon
so has part: feature:11378364-11378417:-1:exon
so has part: feature:11370983-11371083:-1:exon
so has part: feature:11365135-11365281:-1:exon
so has part: feature:11355169-11355270:-1:exon

XP_030662028.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11641450-11641506:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:11581510-11581677:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:11558886-11559015:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:11521068-11521180:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:11518833-11519026:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:11490113-11490312:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:11468339-11468506:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:11450026-11450159:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:11443314-11443388:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:11442424-11442582:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:11422980-11423108:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:11422006-11422105:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:11385093-11385314:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:11378364-11378417:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:11370983-11371083:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:11365135-11365281:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:11355169-11355270:-1:exon

APP
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61853
gene: APP
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: amyloid-beta precursor protein isoform X1
translation: MLPGLALLLLAAWTARALEVPTDGNAGLLAEPQIAMFCGRLNMHMNVQNGKWDSDPSGTKTCIDTKEGILQYCQEVYPELQITNVVEANQPVTIQNWCKRGRKQCKTHPHFVIPYRCLVGEFVSDALLVPDKCKFLHQERMDVCETHLHWHTVAKETCSEKSTNLHDYGMLLPCGIDKFRGVEFVCCPLAEESDNVDSADAEEDDSDVWWGGADTDYADGSEDKVVEVAEEEEVAEVEEEADDDEDDEDGDEVEEEAEEPYEEATERTTSIATTTTTTTESVEEVVREVCSEQAETGPCRAMISRWYFDVTEGKCAPFFYGGCGGNRNNFDTEEYCMAVCGSVMSQSLLKTTQEPLARDPVKLPTTAASTPDAVDKYLETPGDENEHAHFQKAKERLEAKHRERMSQVMREWEEAERQAKNLPKADKKAVIQHFQEKVESLEQEAANERQQLVETHMARVEAMLNDRRRLALENYITALQAVPPRPRHVFNMLKKYVRAEQKDRQHTLKHFEHVRMVDPKKAAQIRSQVMTHLRVIYERMNQSLSLLYNVPAVAEEIQDEVDELLQKEQNYSDDVLANMISEPRISYGNDALMPSLTETKTTVELLPVNGEFSLDDLQPWHSFGADSVPANTENEVEPVDARPAADRGLTTRPGSGLTNIKTEEISEVKMDAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLMVGGVVIATVIVITLVMLKKKQYTSIHHGVVEVDAAVTPEERHLSKMQQNGYENPTYKFFEQMQN
SIO_010081: APP
subclass of: SO_0000673
so part of: APP
location: complement(join(11355169..11355270,11365135..11365281,11370983..11371083,11378364..11378417,11385093..11385314,11422006..11422105,11422980..11423108,11442424..11442582,11443314..11443388,11450026..11450159,11465376..11465432,11468339..11468506,11490113..11490312,11518833..11519026,11521068..11521180,11558886..11559015,11581510..11581677,11641450..11641506))
location: region:11355169-11641506:-1
so has part: feature:11641450-11641506:-1:exon
so has part: feature:11581510-11581677:-1:exon
so has part: feature:11558886-11559015:-1:exon
so has part: feature:11521068-11521180:-1:exon
so has part: feature:11518833-11519026:-1:exon
so has part: feature:11490113-11490312:-1:exon
so has part: feature:11468339-11468506:-1:exon
so has part: feature:11465376-11465432:-1:exon
so has part: feature:11450026-11450159:-1:exon
so has part: feature:11443314-11443388:-1:exon
so has part: feature:11442424-11442582:-1:exon
so has part: feature:11422980-11423108:-1:exon
so has part: feature:11422006-11422105:-1:exon
so has part: feature:11385093-11385314:-1:exon
so has part: feature:11378364-11378417:-1:exon
so has part: feature:11370983-11371083:-1:exon
so has part: feature:11365135-11365281:-1:exon
so has part: feature:11355169-11355270:-1:exon

XP_030662027.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11641450-11641506:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:11581510-11581677:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:11558886-11559015:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:11521068-11521180:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:11518833-11519026:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:11490113-11490312:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:11468339-11468506:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:11465376-11465432:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:11450026-11450159:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:11443314-11443388:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:11442424-11442582:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:11422980-11423108:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:11422006-11422105:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:11385093-11385314:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:11378364-11378417:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:11370983-11371083:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:11365135-11365281:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:11355169-11355270:-1:exon

LOC115833139
type: Gene
subclass of: SO_0000704
RO_0002162: 61853
gene: LOC115833139
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 11641850..11683961
location: region:11641850-11683961:1
so has part: feature:11641850-11683961:1:exon
subclass of: SO_0000011

115833139
type: Gene
SIO_000068: ncbigene

position:11641850:1
position: 11641850
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11683961:1
position: 11683961
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11641850-11683961:1:exon

LOC115833139
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 61853
nc RNA class: lncRNA
gene: LOC115833139
product: uncharacterized LOC115833139, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XR_004028580.1
SIO_010081: LOC115833139
subclass of: SO_0000673
so part of: LOC115833139
location: join(11641850..11641936,11650117..11650208,11661414..11661486,11682783..11682889,11683923..11683961)
location: region:11641850-11683961:1
so has part: feature:11641850-11641936:1:exon
so has part: feature:11650117-11650208:1:exon
so has part: feature:11661414-11661486:1:exon
so has part: feature:11682783-11682889:1:exon
so has part: feature:11683923-11683961:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:11641850-11641936:1:exon

position:11641936:1
position: 11641936
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:11650117-11650208:1:exon

position:11650117:1
position: 11650117
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11650208:1
position: 11650208
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:11661414-11661486:1:exon

position:11661414:1
position: 11661414
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11661486:1
position: 11661486
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:11682783-11682889:1:exon

position:11682783:1
position: 11682783
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11682889:1
position: 11682889
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:11683923-11683961:1:exon

position:11683923:1
position: 11683923
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC115833139
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 61853
nc RNA class: lncRNA
gene: LOC115833139
product: uncharacterized LOC115833139, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XR_004028579.1
SIO_010081: LOC115833139
subclass of: SO_0000673
so part of: LOC115833139
location: join(11641850..11641936,11650117..11650208,11661414..11661486,11682783..11682889,11683770..11683949)
location: region:11641850-11683949:1
so has part: feature:11641850-11641936:1:exon
so has part: feature:11650117-11650208:1:exon
so has part: feature:11661414-11661486:1:exon
so has part: feature:11682783-11682889:1:exon
so has part: feature:11683770-11683949:1:exon

position:11683949:1
position: 11683949
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11641850-11641936:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:11650117-11650208:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:11661414-11661486:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:11682783-11682889:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:11683770-11683949:1:exon

position:11683770:1
position: 11683770
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC115833179
type: Gene
subclass of: SO_0000704
RO_0002162: 61853
gene: LOC115833179
note: Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: 11660379..11660485
location: region:11660379-11660485:1
so has part: feature:11660379-11660485:1:exon
subclass of: SO_0000623

115833179
type: Gene
SIO_000068: ncbigene

position:11660379:1
position: 11660379
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11660485:1
position: 11660485
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11660379-11660485:1:exon

LOC115833179
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 61853
nc RNA class: snRNA
gene: LOC115833179
product: U6 spliceosomal RNA
inference: COORDINATES: nucleotide motif:Rfam:12.0:RF00026
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_004028626.1
SIO_010081: LOC115833179
subclass of: SO_0000673
so part of: LOC115833179
location: 11660379..11660485
location: region:11660379-11660485:1
so has part: feature:11660379-11660485:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:11660379-11660485:1:exon

CYYR1
type: Gene
subclass of: SO_0000704
RO_0002162: 61853
gene: CYYR1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(11917236..12018063)
location: region:11917236-12018063:-1
so has part: feature:11917236-12018063:-1:exon
subclass of: SO_0000010

100588714
type: Gene
SIO_000068: ncbigene

position:11917236:-1
position: 11917236
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12018063:-1
position: 12018063
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11917236-12018063:-1:exon

CYYR1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 61853
gene: CYYR1
product: cysteine and tyrosine rich 1
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 92 ESTs, 4 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XM_030806294.1
SIO_010081: CYYR1
subclass of: SO_0000673
so part of: CYYR1
location: complement(join(11917236..11919665,11930131..11930288,12011077..12011179,12017651..12018063))
location: region:11917236-12018063:-1
so has part: feature:12017651-12018063:-1:exon
so has part: feature:12011077-12011179:-1:exon
so has part: feature:11930131-11930288:-1:exon
so has part: feature:11917236-11919665:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:12017651-12018063:-1:exon

position:12017651:-1
position: 12017651
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:12011077-12011179:-1:exon

position:12011077:-1
position: 12011077
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12011179:-1
position: 12011179
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:11930131-11930288:-1:exon

position:11930131:-1
position: 11930131
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11930288:-1
position: 11930288
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:11917236-11919665:-1:exon

position:11919665:-1
position: 11919665
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

CYYR1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61853
gene: CYYR1
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: cysteine and tyrosine-rich protein 1
translation: MNCEPGWPRTPEWPPSPRLSAVGRDKETWAPSAARLGPRTPQLRGVXHSLAGDAPGPGSLGRLPRQWPGLCSTPLSGALLCPSDRPPSSPFPPVPGSPFAPSLSLARNLRPPAWMDAPRLPVRPGVLLPKLVLLFVYADDCLAQCGKDCKSYCCDGTTPYCCSYYAYIGNILSGTAIAGIVFGIVFIMGVIAGIAICICMCMKNHRATRVGILRTTHINTVSSYPAGPPPYGYDHEMEYCADLPPPYSPTPQGSAQHSPPPPYPGNPRK
SIO_010081: CYYR1
subclass of: SO_0000673
so part of: CYYR1
location: complement(join(11919532..11919665,11930131..11930288,12011077..12011179,12017651..12018063))
location: region:11919532-12018063:-1
so has part: feature:12017651-12018063:-1:exon
so has part: feature:12011077-12011179:-1:exon
so has part: feature:11930131-11930288:-1:exon
so has part: feature:11919532-11919665:-1:exon

XP_030662154.1
type: Protein
SIO_000068: ncbiprotein

position:11919532:-1
position: 11919532
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12017651-12018063:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:12011077-12011179:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:11930131-11930288:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:11919532-11919665:-1:exon

LOC105738714
type: Gene
subclass of: SO_0000704
RO_0002162: 61853
gene: LOC105738714
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 11953597..12013961
location: region:11953597-12013961:1
so has part: feature:11953597-12013961:1:exon
subclass of: SO_0000011

105738714
type: Gene
SIO_000068: ncbigene

position:11953597:1
position: 11953597
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12013961:1
position: 12013961
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11953597-12013961:1:exon

LOC105738714
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 61853
nc RNA class: lncRNA
gene: LOC105738714
product: uncharacterized LOC105738714
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, and 63% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XR_001114552.2
SIO_010081: LOC105738714
subclass of: SO_0000673
so part of: LOC105738714
location: join(11953597..11953719,11994999..11996806,12012768..12013961)
location: region:11953597-12013961:1
so has part: feature:11953597-11953719:1:exon
so has part: feature:11994999-11996806:1:exon
so has part: feature:12012768-12013961:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:11953597-11953719:1:exon

position:11953719:1
position: 11953719
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:11994999-11996806:1:exon

position:11994999:1
position: 11994999
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11996806:1
position: 11996806
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:12012768-12013961:1:exon

position:12012768:1
position: 12012768
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ADAMTS1
type: Gene
subclass of: SO_0000704
RO_0002162: 61853
gene: ADAMTS1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(12273325..12282424)
location: region:12273325-12282424:-1
so has part: feature:12273325-12282424:-1:exon
subclass of: SO_0000010

100589270
type: Gene
SIO_000068: ncbigene

position:12273325:-1
position: 12273325
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12282424:-1
position: 12282424
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12273325-12282424:-1:exon

ADAMTS1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 61853
gene: ADAMTS1
product: ADAM metallopeptidase with thrombospondin type 1 motif 1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 mRNAs, 483 ESTs, 9 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XM_003263810.3
SIO_010081: ADAMTS1
subclass of: SO_0000673
so part of: ADAMTS1
location: complement(join(12273325..12275312,12275473..12275648,12276621..12276796,12276909..12277095,12277310..12277596,12278032..12278199,12278868..12279000,12279351..12279697,12281243..12282424))
location: region:12273325-12282424:-1
so has part: feature:12281243-12282424:-1:exon
so has part: feature:12279351-12279697:-1:exon
so has part: feature:12278868-12279000:-1:exon
so has part: feature:12278032-12278199:-1:exon
so has part: feature:12277310-12277596:-1:exon
so has part: feature:12276909-12277095:-1:exon
so has part: feature:12276621-12276796:-1:exon
so has part: feature:12275473-12275648:-1:exon
so has part: feature:12273325-12275312:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:12281243-12282424:-1:exon

position:12281243:-1
position: 12281243
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:12279351-12279697:-1:exon

position:12279351:-1
position: 12279351
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12279697:-1
position: 12279697
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:12278868-12279000:-1:exon

position:12278868:-1
position: 12278868
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12279000:-1
position: 12279000
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:12278032-12278199:-1:exon

position:12278032:-1
position: 12278032
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12278199:-1
position: 12278199
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:12277310-12277596:-1:exon

position:12277310:-1
position: 12277310
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12277596:-1
position: 12277596
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:12276909-12277095:-1:exon

position:12276909:-1
position: 12276909
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12277095:-1
position: 12277095
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:12276621-12276796:-1:exon

position:12276621:-1
position: 12276621
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12276796:-1
position: 12276796
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:12275473-12275648:-1:exon

position:12275473:-1
position: 12275473
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12275648:-1
position: 12275648
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:12273325-12275312:-1:exon

position:12275312:-1
position: 12275312
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

ADAMTS1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61853
gene: ADAMTS1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: A disintegrin and metalloproteinase with thrombospondin motifs 1
translation: MQRAVPEGFGRRKLGSDMGNAERAPGSRSLGPVPTLLLLAAALLAVSDALGRPSEEDEELVVPELERAPGHGTTRLRLHAFDQQLDLELRPDSSFLAPGFTLQNVGRKSGSETPLPEPDLAHCFYSGTVNGDPSSAAALSLCEGVRGAFYLRGEAYFIQPLPAASERLATAAPGEKPPAPLEFHLLRRNRQGDGGGTCGVVDDEPRPTGKAETEDEDEGTEGEDEGAQWLPQDPALQRVGQPAGTGSIRKKRFVSSHRYVETMLVADQSMAEFHGSGLKHYLLTLFSVAARLYKHPSIRNSVSLVVVKILVIHDEQKGPEVTSNAALTLRNFCNWQKQHNPPSDRDAEHYDTAILFTRQDLCGSQTCDTLGMADVGTVCDPSRSCSVIEDDGLQAAFTTAHELGHVFNMPHDDAKQCTSLNGVNQDSHMMASMLSNLDHSQPWSPCSAYMITSFLDNGHGECLMDKPQNPIQLPGDLPGTSYDANRQCQFTFGEDSKHCPDAASTCSTLWCTGTSGGVLVCQTKHFPWADGTSCGEGKWCINGKCVNKTDRKHFDTPFHGSWGMWGPWGDCSRTCGGGVQYTMRECDNPVPKNGGKYCEGKRVRYRSCNLEDCPDNNGKTFREEQCEAHNEFSKASFGSGPAVEWIPKYAGVSPKDRCKLICQAKGIGYFFVLQPKVVDGTPCSPDSTSVCVQGQCVKAGCDRIIDSKKKFDKCGVCGGNGSTCKKISGSVTSAKPGYHDIITIPTGATNIEVKQRNQRGSRNNGSFLAIKAADGTYILNGDYTLSTLEQDIMYKGVVLRYSGSSAALERIRSFSPLKEPLTIQVLTVGNALRPKIKYTYFVKKKKESFNAIPTFSAWVIEEWGECSKSCELGWQRRLVECRDINGQPASECAKEVKPASTRPCADHPCPQWQLGEWSSCSKTCGKGYKKRSLKCLSHDGGVLSHESCDPLKKPKHFIDFCTMAECS
SIO_010081: ADAMTS1
subclass of: SO_0000673
so part of: ADAMTS1
location: complement(join(12274613..12275312,12275473..12275648,12276621..12276796,12276909..12277095,12277310..12277596,12278032..12278199,12278868..12279000,12279351..12279697,12281243..12281972))
location: region:12274613-12281972:-1
so has part: feature:12281243-12281972:-1:exon
so has part: feature:12279351-12279697:-1:exon
so has part: feature:12278868-12279000:-1:exon
so has part: feature:12278032-12278199:-1:exon
so has part: feature:12277310-12277596:-1:exon
so has part: feature:12276909-12277095:-1:exon
so has part: feature:12276621-12276796:-1:exon
so has part: feature:12275473-12275648:-1:exon
so has part: feature:12274613-12275312:-1:exon

XP_003263858.1
type: Protein
SIO_000068: ncbiprotein

position:12274613:-1
position: 12274613
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12281972:-1
position: 12281972
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12281243-12281972:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:12279351-12279697:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:12278868-12279000:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:12278032-12278199:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:12277310-12277596:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:12276909-12277095:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:12276621-12276796:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:12275473-12275648:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:12274613-12275312:-1:exon

ADAMTS5
type: Gene
subclass of: SO_0000704
RO_0002162: 61853
gene: ADAMTS5
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(12358754..12408476)
location: region:12358754-12408476:-1
so has part: feature:12358754-12408476:-1:exon
subclass of: SO_0000010

100589610
type: Gene
SIO_000068: ncbigene

position:12358754:-1
position: 12358754
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12408476:-1
position: 12408476
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12358754-12408476:-1:exon

ADAMTS5
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 61853
gene: ADAMTS5
product: ADAM metallopeptidase with thrombospondin type 1 motif 5
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 mRNAs, 89 ESTs, 5 Proteins, and 96% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_003263811.3
SIO_010081: ADAMTS5
subclass of: SO_0000673
so part of: ADAMTS5
location: complement(join(12358754..12365451,12370696..12370871,12372804..12372979,12373705..12373888,12375304..12375587,12384287..12384454,12395626..12395758,12406273..12408120,12408429..12408476))
location: region:12358754-12408476:-1
so has part: feature:12408429-12408476:-1:exon
so has part: feature:12406273-12408120:-1:exon
so has part: feature:12395626-12395758:-1:exon
so has part: feature:12384287-12384454:-1:exon
so has part: feature:12375304-12375587:-1:exon
so has part: feature:12373705-12373888:-1:exon
so has part: feature:12372804-12372979:-1:exon
so has part: feature:12370696-12370871:-1:exon
so has part: feature:12358754-12365451:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:12408429-12408476:-1:exon

position:12408429:-1
position: 12408429
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:12406273-12408120:-1:exon

position:12406273:-1
position: 12406273
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12408120:-1
position: 12408120
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:12395626-12395758:-1:exon

position:12395626:-1
position: 12395626
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12395758:-1
position: 12395758
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:12384287-12384454:-1:exon

position:12384287:-1
position: 12384287
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12384454:-1
position: 12384454
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:12375304-12375587:-1:exon

position:12375304:-1
position: 12375304
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12375587:-1
position: 12375587
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:12373705-12373888:-1:exon

position:12373705:-1
position: 12373705
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12373888:-1
position: 12373888
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:12372804-12372979:-1:exon

position:12372804:-1
position: 12372804
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12372979:-1
position: 12372979
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:12370696-12370871:-1:exon

position:12370696:-1
position: 12370696
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12370871:-1
position: 12370871
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:12358754-12365451:-1:exon

position:12365451:-1
position: 12365451
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

ADAMTS5
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61853
gene: ADAMTS5
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: A disintegrin and metalloproteinase with thrombospondin motifs 5
translation: MLLGWASLLLCAFRLPLAAAGPAAAPAQDKAGQPPTAAAAAQPRRRQGEEVQERAEPPGHPHPLAQRRRSKGLVQNIDQLYSGGGKVGYLVYAGGRRFLLDLERDGSVGIAGFVPAGGGTSAPWRHRSHCFYRGTVDGSPRSLAVFDLCGGLDGFFAVKHARYTLKPLLRGPWAEEETGRVYGDGSARILHVYTREGFSFEALPPRASCETPASTSEPHEHPPAHSNPSGRAALASQLLDQSALSPAGGSGPQTWWRRRRRSISRARQVELLLVADASMARLYGRGLQHYLLTLASIANRLYSHASIENHIRLAVVKVVVLGDKDKSLEVSKNAATTLKNFCKWQHQHNQLGDDHEEHYDAAILFTREDLCGHHSCDTLGMADVGTICSPERSCAVIEDDGLHAAFTVAHEIGHLLGLSHDDSKFCEETFGSTEDKRLMSSILTSIDASKPWSKCTSATITEFLDDGHGNCLLDLPRKQILGPEELPGQTYDATQQCNLTFGPEYSVCPGMDVCARLWCAVVRQGQMVCLTKKLPAVEGTPCGKGRICLQGKCVDKTKKKYYSTSSHGNWGSWGSWGQCSRSCGGGVQFAYRHCNNPAPRNNGRYCTGKRAIYRSCSLMPCPPNGKSFRHEQCEAKNGYQSDAKGVKTFVEWVPKYAGVLPADVCKLTCRAKGTGYYVVFSPKVTDGTECRPYSNSVCVRGKCVRTGCDGIIGSKLQYDKCGVCGGDNSSCTKIVGTFNKKSKGYTDVVRIPEGATHIKVRQFKAKDQTRFTAYLALKKKNGEYLINGKYMISTSETIIDINGTVMNYSGWSHRDDFLHGMGYSATKEILIVQILATDPTKPLDVRYSFFVPKKSTPKVNSVTSHGSNKVGSHTSQPQPQWVTGPWLACSRTCDTGWHTRTVQCQDGNRKLAKGCPLSQRPSAFKQCLLKKC
SIO_010081: ADAMTS5
subclass of: SO_0000673
so part of: ADAMTS5
location: complement(join(12364878..12365451,12370696..12370871,12372804..12372979,12373705..12373888,12375304..12375587,12384287..12384454,12395626..12395758,12406273..12407376))
location: region:12364878-12407376:-1
so has part: feature:12406273-12407376:-1:exon
so has part: feature:12395626-12395758:-1:exon
so has part: feature:12384287-12384454:-1:exon
so has part: feature:12375304-12375587:-1:exon
so has part: feature:12373705-12373888:-1:exon
so has part: feature:12372804-12372979:-1:exon
so has part: feature:12370696-12370871:-1:exon
so has part: feature:12364878-12365451:-1:exon

XP_003263859.2
type: Protein
SIO_000068: ncbiprotein

position:12364878:-1
position: 12364878
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12407376:-1
position: 12407376
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12406273-12407376:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:12395626-12395758:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:12384287-12384454:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:12375304-12375587:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:12373705-12373888:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:12372804-12372979:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:12370696-12370871:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:12364878-12365451:-1:exon

LOC101176568
type: Gene
subclass of: SO_0000704
RO_0002162: 61853
gene: LOC101176568
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: complement(12602807..12603410)
location: region:12602807-12603410:-1
so has part: feature:12602807-12603410:-1:exon

101176568
type: Gene
SIO_000068: ncbigene

position:12602807:-1
position: 12602807
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12603410:-1
position: 12603410
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12602807-12603410:-1:exon

LOC101176568
type: Exon
subclass of: SO_0000147
RO_0002162: 61853
gene: LOC101176568
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 20 Proteins
pseudo: true
SIO_010081: LOC101176568
subclass of: SO_0000673
so part of: LOC101176568
location: complement(12602807..12603410)
location: region:12602807-12603410:-1
so has part: feature:12602807-12603410:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:12602807-12603410:-1:exon

LOC100593322
type: Gene
subclass of: SO_0000704
RO_0002162: 61853
gene: LOC100593322
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: complement(12913600..12914318)
location: region:12913600-12914318:-1
so has part: feature:12913600-12914318:-1:exon

100593322
type: Gene
SIO_000068: ncbigene

position:12913600:-1
position: 12913600
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12914318:-1
position: 12914318
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12913600-12914318:-1:exon

LOC100593322
type: Exon
subclass of: SO_0000147
RO_0002162: 61853
gene: LOC100593322
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 10 Proteins, and 20% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
pseudo: true
SIO_010081: LOC100593322
subclass of: SO_0000673
so part of: LOC100593322
location: complement(12913600..12913815)
location: region:12913600-12913815:-1
so has part: feature:12913600-12913815:-1:exon

position:12913815:-1
position: 12913815
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12913600-12913815:-1:exon

LOC100593322
type: Exon
subclass of: SO_0000147
RO_0002162: 61853
gene: LOC100593322
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 10 Proteins, and 20% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
pseudo: true
SIO_010081: LOC100593322
subclass of: SO_0000673
so part of: LOC100593322
location: complement(12913978..12914318)
location: region:12913978-12914318:-1
so has part: feature:12913978-12914318:-1:exon

position:12913978:-1
position: 12913978
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12913978-12914318:-1:exon

LOC101176806
type: Gene
subclass of: SO_0000704
RO_0002162: 61853
gene: LOC101176806
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 13335594..13361698
location: region:13335594-13361698:1
so has part: feature:13335594-13361698:1:exon
subclass of: SO_0000010

101176806
type: Gene
SIO_000068: ncbigene

position:13335594:1
position: 13335594
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13361698:1
position: 13361698
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13335594-13361698:1:exon

LOC101176806
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 61853
gene: LOC101176806
product: uncharacterized LOC101176806
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA
transcript id: XM_004092289.2
SIO_010081: LOC101176806
subclass of: SO_0000673
so part of: LOC101176806
location: join(13335594..13335675,13359084..13359158,13359676..13361698)
location: region:13335594-13361698:1
so has part: feature:13335594-13335675:1:exon
so has part: feature:13359084-13359158:1:exon
so has part: feature:13359676-13361698:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:13335594-13335675:1:exon

position:13335675:1
position: 13335675
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:13359084-13359158:1:exon

position:13359084:1
position: 13359084
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13359158:1
position: 13359158
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:13359676-13361698:1:exon

position:13359676:1
position: 13359676
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC101176806
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61853
gene: LOC101176806
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: uncharacterized protein LOC101176806
translation: MIVRPPQPCETMCPAFLLSGGFMVSLTSGVKLQTFILDGKVPQVPTRPRSPAGFTSHWHWLWDFAAPSPGTPAAWRKLLPDNQKEKRGSEKETETRHHGQRPREEGRAVHTRDPASDQAQQGPRSRPPGPHTGRPALRAAPAPARASLFTLPREQREPAQASASPREGPS
SIO_010081: LOC101176806
subclass of: SO_0000673
so part of: LOC101176806
location: join(13335643..13335675,13359084..13359158,13359676..13360080)
location: region:13335643-13360080:1
so has part: feature:13335643-13335675:1:exon
so has part: feature:13359084-13359158:1:exon
so has part: feature:13359676-13360080:1:exon

XP_004092337.2
type: Protein
SIO_000068: ncbiprotein

position:13335643:1
position: 13335643
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13360080:1
position: 13360080
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13335643-13335675:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:13359084-13359158:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:13359676-13360080:1:exon

LOC115833173
type: Gene
subclass of: SO_0000704
RO_0002162: 61853
gene: LOC115833173
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 13480352..13489814
location: region:13480352-13489814:1
so has part: feature:13480352-13489814:1:exon
subclass of: SO_0000011

115833173
type: Gene
SIO_000068: ncbigene

position:13480352:1
position: 13480352
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13489814:1
position: 13489814
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13480352-13489814:1:exon

LOC115833173
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 61853
nc RNA class: lncRNA
gene: LOC115833173
product: uncharacterized LOC115833173
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 mRNAs, 3 ESTs
transcript id: XR_004028619.1
SIO_010081: LOC115833173
subclass of: SO_0000673
so part of: LOC115833173
location: join(13480352..13480421,13489561..13489814)
location: region:13480352-13489814:1
so has part: feature:13480352-13480421:1:exon
so has part: feature:13489561-13489814:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:13480352-13480421:1:exon

position:13480421:1
position: 13480421
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:13489561-13489814:1:exon

position:13489561:1
position: 13489561
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC101176850
type: Gene
subclass of: SO_0000704
RO_0002162: 61853
gene: LOC101176850
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 13556487..13576014
location: region:13556487-13576014:1
so has part: feature:13556487-13576014:1:exon
subclass of: SO_0000011

101176850
type: Gene
SIO_000068: ncbigene

position:13556487:1
position: 13556487
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13576014:1
position: 13576014
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13556487-13576014:1:exon

LOC101176850
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 61853
nc RNA class: lncRNA
gene: LOC101176850
product: uncharacterized LOC101176850
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs
transcript id: XR_180268.3
SIO_010081: LOC101176850
subclass of: SO_0000673
so part of: LOC101176850
location: join(13556487..13556605,13573780..13573829,13574997..13576014)
location: region:13556487-13576014:1
so has part: feature:13556487-13556605:1:exon
so has part: feature:13573780-13573829:1:exon
so has part: feature:13574997-13576014:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:13556487-13556605:1:exon

position:13556605:1
position: 13556605
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:13573780-13573829:1:exon

position:13573780:1
position: 13573780
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13573829:1
position: 13573829
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:13574997-13576014:1:exon

position:13574997:1
position: 13574997
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

N6AMT1
type: Gene
subclass of: SO_0000704
RO_0002162: 61853
gene: N6AMT1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(14335509..14351289)
location: region:14335509-14351289:-1
so has part: feature:14335509-14351289:-1:exon
subclass of: SO_0000010

100590958
type: Gene
SIO_000068: ncbigene

position:14335509:-1
position: 14335509
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14351289:-1
position: 14351289
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14335509-14351289:-1:exon

N6AMT1
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 61853
gene: N6AMT1
product: N-6 adenine-specific DNA methyltransferase 1, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 mRNAs, 16 ESTs, 7 Proteins, and 80% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XR_001114555.2
SIO_010081: N6AMT1
so part of: N6AMT1
location: complement(join(14335509..14336053,14339628..14339805,14341017..14341158,14345674..14345757,14347994..14348084,14348819..14348905,14351126..14351289))
location: region:14335509-14351289:-1
so has part: feature:14351126-14351289:-1:exon
so has part: feature:14348819-14348905:-1:exon
so has part: feature:14347994-14348084:-1:exon
so has part: feature:14345674-14345757:-1:exon
so has part: feature:14341017-14341158:-1:exon
so has part: feature:14339628-14339805:-1:exon
so has part: feature:14335509-14336053:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:14351126-14351289:-1:exon

position:14351126:-1
position: 14351126
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:14348819-14348905:-1:exon

position:14348819:-1
position: 14348819
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14348905:-1
position: 14348905
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:14347994-14348084:-1:exon

position:14347994:-1
position: 14347994
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14348084:-1
position: 14348084
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:14345674-14345757:-1:exon

position:14345674:-1
position: 14345674
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14345757:-1
position: 14345757
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:14341017-14341158:-1:exon

position:14341017:-1
position: 14341017
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14341158:-1
position: 14341158
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:14339628-14339805:-1:exon

position:14339628:-1
position: 14339628
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14339805:-1
position: 14339805
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:14335509-14336053:-1:exon

position:14336053:-1
position: 14336053
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

N6AMT1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 61853
gene: N6AMT1
product: N-6 adenine-specific DNA methyltransferase 1, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 29 ESTs, 7 Proteins, and 96% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_004092291.3
SIO_010081: N6AMT1
subclass of: SO_0000673
so part of: N6AMT1
location: complement(join(14339381..14339805,14341017..14341158,14345674..14345757,14347994..14348084,14348819..14348905,14351126..14351289))
location: region:14339381-14351289:-1
so has part: feature:14351126-14351289:-1:exon
so has part: feature:14348819-14348905:-1:exon
so has part: feature:14347994-14348084:-1:exon
so has part: feature:14345674-14345757:-1:exon
so has part: feature:14341017-14341158:-1:exon
so has part: feature:14339381-14339805:-1:exon

position:14339381:-1
position: 14339381
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14351126-14351289:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:14348819-14348905:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:14347994-14348084:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:14345674-14345757:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:14341017-14341158:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:14339381-14339805:-1:exon

N6AMT1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61853
gene: N6AMT1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: methyltransferase N6AMT1
translation: MAGQSFPTPFHGHVGRGAFSDVYEPAEDTFLLLDALEAAAAELAGVEICLEVGSGSGVVSAFLASMIGPQALYMCTDINPEAAACTLETARCNKVHIQPVITDLVKGLLPRLKEKVDLLVFNPPYVVTPPEEVGSHGIEAAWAGGRNGREVMDRFFPLVPDLLSPRGLFYLVTIKENNPEEILKIMKTKGLQGTTALSRQAGQETLSVLKFTKS
SIO_010081: N6AMT1
subclass of: SO_0000673
so part of: N6AMT1
location: complement(join(14339699..14339805,14341017..14341158,14345674..14345757,14347994..14348084,14348819..14348905,14351126..14351259))
location: region:14339699-14351259:-1
so has part: feature:14351126-14351259:-1:exon
so has part: feature:14348819-14348905:-1:exon
so has part: feature:14347994-14348084:-1:exon
so has part: feature:14345674-14345757:-1:exon
so has part: feature:14341017-14341158:-1:exon
so has part: feature:14339699-14339805:-1:exon

XP_004092339.1
type: Protein
SIO_000068: ncbiprotein

position:14339699:-1
position: 14339699
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14351259:-1
position: 14351259
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14351126-14351259:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:14348819-14348905:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:14347994-14348084:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:14345674-14345757:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:14341017-14341158:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:14339699-14339805:-1:exon

LOC115833171
type: Gene
subclass of: SO_0000704
RO_0002162: 61853
gene: LOC115833171
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: complement(14364161..14366329)
location: region:14364161-14366329:-1
so has part: feature:14364161-14366329:-1:exon

115833171
type: Gene
SIO_000068: ncbigene

position:14364161:-1
position: 14364161
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14366329:-1
position: 14366329
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14364161-14366329:-1:exon

LOC115833171
type: Exon
subclass of: SO_0000147
RO_0002162: 61853
gene: LOC115833171
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 10% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC115833171
subclass of: SO_0000673
so part of: LOC115833171
location: complement(14364161..14364435)
location: region:14364161-14364435:-1
so has part: feature:14364161-14364435:-1:exon

position:14364435:-1
position: 14364435
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14364161-14364435:-1:exon

LOC115833171
type: Exon
subclass of: SO_0000147
RO_0002162: 61853
gene: LOC115833171
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 10% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC115833171
subclass of: SO_0000673
so part of: LOC115833171
location: complement(14365047..14365172)
location: region:14365047-14365172:-1
so has part: feature:14365047-14365172:-1:exon

position:14365047:-1
position: 14365047
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14365172:-1
position: 14365172
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14365047-14365172:-1:exon

LOC115833171
type: Exon
subclass of: SO_0000147
RO_0002162: 61853
gene: LOC115833171
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 10% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC115833171
subclass of: SO_0000673
so part of: LOC115833171
location: complement(14365685..14366329)
location: region:14365685-14366329:-1
so has part: feature:14365685-14366329:-1:exon

position:14365685:-1
position: 14365685
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14365685-14366329:-1:exon

LTN1
type: Gene
subclass of: SO_0000704
RO_0002162: 61853
gene: LTN1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(14392163..14457853)
location: region:14392163-14457853:-1
so has part: feature:14392163-14457853:-1:exon
subclass of: SO_0000010

100591523
type: Gene
SIO_000068: ncbigene

position:14392163:-1
position: 14392163
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14457853:-1
position: 14457853
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14392163-14457853:-1:exon

LTN1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 61853
gene: LTN1
product: listerin E3 ubiquitin protein ligase 1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 123 ESTs, 7 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_003263815.4
SIO_010081: LTN1
subclass of: SO_0000673
so part of: LTN1
location: complement(join(14392163..14394533,14395178..14395345,14396499..14396693,14399151..14399371,14400577..14400748,14405259..14405445,14407305..14407379,14407710..14407947,14408430..14408643,14409851..14409995,14410200..14410335,14411422..14411564,14416100..14416204,14417156..14417315,14420683..14420869,14421258..14421402,14422620..14422773,14423683..14423922,14424766..14424955,14430106..14430147,14430612..14431421,14433740..14433875,14434818..14435008,14435584..14435757,14445470..14445650,14446958..14447010,14449357..14449587,14451116..14451214,14451702..14451905,14457659..14457853))
location: region:14392163-14457853:-1
so has part: feature:14457659-14457853:-1:exon
so has part: feature:14451702-14451905:-1:exon
so has part: feature:14451116-14451214:-1:exon
so has part: feature:14449357-14449587:-1:exon
so has part: feature:14446958-14447010:-1:exon
so has part: feature:14445470-14445650:-1:exon
so has part: feature:14435584-14435757:-1:exon
so has part: feature:14434818-14435008:-1:exon
so has part: feature:14433740-14433875:-1:exon
so has part: feature:14430612-14431421:-1:exon
so has part: feature:14430106-14430147:-1:exon
so has part: feature:14424766-14424955:-1:exon
so has part: feature:14423683-14423922:-1:exon
so has part: feature:14422620-14422773:-1:exon
so has part: feature:14421258-14421402:-1:exon
so has part: feature:14420683-14420869:-1:exon
so has part: feature:14417156-14417315:-1:exon
so has part: feature:14416100-14416204:-1:exon
so has part: feature:14411422-14411564:-1:exon
so has part: feature:14410200-14410335:-1:exon
so has part: feature:14409851-14409995:-1:exon
so has part: feature:14408430-14408643:-1:exon
so has part: feature:14407710-14407947:-1:exon
so has part: feature:14407305-14407379:-1:exon
so has part: feature:14405259-14405445:-1:exon
so has part: feature:14400577-14400748:-1:exon
so has part: feature:14399151-14399371:-1:exon
so has part: feature:14396499-14396693:-1:exon
so has part: feature:14395178-14395345:-1:exon
so has part: feature:14392163-14394533:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:14457659-14457853:-1:exon

position:14457659:-1
position: 14457659
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:14451702-14451905:-1:exon

position:14451702:-1
position: 14451702
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14451905:-1
position: 14451905
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:14451116-14451214:-1:exon

position:14451116:-1
position: 14451116
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14451214:-1
position: 14451214
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:14449357-14449587:-1:exon

position:14449357:-1
position: 14449357
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14449587:-1
position: 14449587
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:14446958-14447010:-1:exon

position:14446958:-1
position: 14446958
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14447010:-1
position: 14447010
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:14445470-14445650:-1:exon

position:14445470:-1
position: 14445470
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14445650:-1
position: 14445650
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:14435584-14435757:-1:exon

position:14435584:-1
position: 14435584
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14435757:-1
position: 14435757
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:14434818-14435008:-1:exon

position:14434818:-1
position: 14434818
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14435008:-1
position: 14435008
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:14433740-14433875:-1:exon

position:14433740:-1
position: 14433740
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14433875:-1
position: 14433875
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:14430612-14431421:-1:exon

position:14430612:-1
position: 14430612
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14431421:-1
position: 14431421
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:14430106-14430147:-1:exon

position:14430106:-1
position: 14430106
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14430147:-1
position: 14430147
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:14424766-14424955:-1:exon

position:14424766:-1
position: 14424766
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14424955:-1
position: 14424955
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:14423683-14423922:-1:exon

position:14423683:-1
position: 14423683
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14423922:-1
position: 14423922
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:14422620-14422773:-1:exon

position:14422620:-1
position: 14422620
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14422773:-1
position: 14422773
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:14421258-14421402:-1:exon

position:14421258:-1
position: 14421258
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14421402:-1
position: 14421402
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:14420683-14420869:-1:exon

position:14420683:-1
position: 14420683
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14420869:-1
position: 14420869
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:14417156-14417315:-1:exon

position:14417156:-1
position: 14417156
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14417315:-1
position: 14417315
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:14416100-14416204:-1:exon

position:14416100:-1
position: 14416100
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14416204:-1
position: 14416204
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:14411422-14411564:-1:exon

position:14411422:-1
position: 14411422
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14411564:-1
position: 14411564
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:14410200-14410335:-1:exon

position:14410200:-1
position: 14410200
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14410335:-1
position: 14410335
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:14409851-14409995:-1:exon

position:14409851:-1
position: 14409851
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14409995:-1
position: 14409995
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 22
SIO_000628: feature:14408430-14408643:-1:exon

position:14408430:-1
position: 14408430
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14408643:-1
position: 14408643
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 23
SIO_000628: feature:14407710-14407947:-1:exon

position:14407710:-1
position: 14407710
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14407947:-1
position: 14407947
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 24
SIO_000628: feature:14407305-14407379:-1:exon

position:14407305:-1
position: 14407305
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14407379:-1
position: 14407379
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 25
SIO_000628: feature:14405259-14405445:-1:exon

position:14405259:-1
position: 14405259
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14405445:-1
position: 14405445
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 26
SIO_000628: feature:14400577-14400748:-1:exon

position:14400577:-1
position: 14400577
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14400748:-1
position: 14400748
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 27
SIO_000628: feature:14399151-14399371:-1:exon

position:14399151:-1
position: 14399151
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14399371:-1
position: 14399371
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 28
SIO_000628: feature:14396499-14396693:-1:exon

position:14396499:-1
position: 14396499
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14396693:-1
position: 14396693
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 29
SIO_000628: feature:14395178-14395345:-1:exon

position:14395178:-1
position: 14395178
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14395345:-1
position: 14395345
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 30
SIO_000628: feature:14392163-14394533:-1:exon

position:14394533:-1
position: 14394533
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LTN1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61853
gene: LTN1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: E3 ubiquitin-protein ligase listerin
translation: MDRVSGGKGPGGSYYSESSSGARDRKLCPGRVNRGLSAQSTAATATMGGKNKQRTKGNLRPSNSGRAAELLAKEQGTVPGFIGFGTSQSDLGYVPAIQGAEEIDSLVDSDFRMVLRKLSKKDVTTKLKAMQEFGTMCTERDTETVKGVLPYWPRIFCKISLDHDRRVREATQQAFEKLILKVKKQLAPYLKSLMGYWLMAQCDTYTPAAFAAKDAFEAAFPPSKQPEAIAFCKDEITSVLQDHLIKETPDTLSDPQTVPEEEREAKFYRVVTCSLLALKKLLCLLPDNELDSLEEKFKSLLSQNKFWKYGKHSVPQIRSAYFELVSALCQRIPQLMKEEASKVSPSVLLSIDDSDPIVCPALWEAVLYTLTTIEDCWLHVNAKKSVFPKLSTVIREGGRGLATVIYPYLLPFISKLPQSITHPKLYFFKNFLTSLVAGLSTERTKTSSSESSAVISAFFECLRFIMQQNLGEEEIEQMLINDQLIPFIDAVLKDPGLQHGQLFNHLAETLSSWEAKADMEKDEKTAHNLENVLIHFWERLSEICVAKINEPEADVESVLGVSNLLQVLQKPKSSLKSNKKKNGKVRFADEILESNKENEKCLSSEGENIEGWELTTEPSLTHSSSGLLSPLRKKPLEDLVCKLADISINYVNEQKSEQHLRFLSTLLDSFSSSRVFKMLLGDEKQSIVQAKPLEIAKLAQKNPAVQFLYQKLTGWLNEDQRKDFGFLVDILYSALRCCDNDMERKKVLDDLTKVDLKWNSLLKIIEKACSSSDKHALVTPWLKGDILGEKLVNLADCLCNEDWESRVSSESHFSERWTLLSLVLSQHVKNDYLIGDVYVERIIVKLHETLFKTKKLSEAENSDSSVSFICDVAYNYFSSATGCLLMPSSEDLLLTLFQLCAQSKEKTHLPDFLICKLKNTWLSGVNLLVHQTDSSYKESTFLHLSALWLKNQVQASSLDINSLQVLLSAVDDLLNTLLESEDSYLMGVYIGSVMPNDSEWEKMRQSLPMQWLHRPLLEGRLSLNYECFKTDFKEQDIKALPSHLCTSALLSKMVLIALRKETVLENNELEKIISELLYSLQWCEELDNPPIFLTGFCEMLQKMNITYDNLRVLGNTSGLLQLLFHRSREHGTLWSLIIAKLILSRSISSDEVKPHYKRKESFFPLTEGNLHTIQSLCPFLSKEEKKEFSAQCIPALLGWTKKDLCSTNGGFGHLAIFNSCLQTKSIDDGELLHGILKIIISWKKEHEDIFLFSCNLSEASPEVLGVNIEIIRFLSLFLKYCSSPLAESEWDFIMCSMLAWLETTSENQALYSIPLVQLFACVSCDLACDLSAFFDSTTLDTIGNLPVNLISEWKEFFSQGIHSLLLPILVTVTGENRDVSETSFQNAMLKPMCETLTYISKEQLLSHKLPARLVADQKTNLPEYLQTLLNTLAPLLLFRARPVQIAVYHMLYKLMPELPQYDQDNLKSYGDEEEEPALSPPAALMSLLSTQEDLLENVLGCIPVGQIVTIKPLSEDFCYVLGYLLTWKLILTFFKAASSQLRALYSMYLRKTKSLNKLLYHLFRLMPENPTYAETATEVPSKDPKTFFTEELQLSIRETTTLPYHIPHLACSVYHMTLKDLPAMVRLWWNSSEKRVFNIVDRFTSKYVSSVLSFQEISSVQTSTQLFNGMTVKARATTREVMATYTIEDIVIELIIQLPSNYPLGSITVESGKRVGVAVQQWRNWMLQLSTYLTHQNGSIMEGLALWKNNVDKRFEGVEDCMICFSVIHGFNYSLPKKACRTCKKKFHSACLYKWFTSSNKSTCPLCRETFF
SIO_010081: LTN1
subclass of: SO_0000673
so part of: LTN1
location: complement(join(14394471..14394533,14395178..14395345,14396499..14396693,14399151..14399371,14400577..14400748,14405259..14405445,14407305..14407379,14407710..14407947,14408430..14408643,14409851..14409995,14410200..14410335,14411422..14411564,14416100..14416204,14417156..14417315,14420683..14420869,14421258..14421402,14422620..14422773,14423683..14423922,14424766..14424955,14430106..14430147,14430612..14431421,14433740..14433875,14434818..14435008,14435584..14435757,14445470..14445650,14446958..14447010,14449357..14449587,14451116..14451214,14451702..14451905,14457659..14457838))
location: region:14394471-14457838:-1
so has part: feature:14457659-14457838:-1:exon
so has part: feature:14451702-14451905:-1:exon
so has part: feature:14451116-14451214:-1:exon
so has part: feature:14449357-14449587:-1:exon
so has part: feature:14446958-14447010:-1:exon
so has part: feature:14445470-14445650:-1:exon
so has part: feature:14435584-14435757:-1:exon
so has part: feature:14434818-14435008:-1:exon
so has part: feature:14433740-14433875:-1:exon
so has part: feature:14430612-14431421:-1:exon
so has part: feature:14430106-14430147:-1:exon
so has part: feature:14424766-14424955:-1:exon
so has part: feature:14423683-14423922:-1:exon
so has part: feature:14422620-14422773:-1:exon
so has part: feature:14421258-14421402:-1:exon
so has part: feature:14420683-14420869:-1:exon
so has part: feature:14417156-14417315:-1:exon
so has part: feature:14416100-14416204:-1:exon
so has part: feature:14411422-14411564:-1:exon
so has part: feature:14410200-14410335:-1:exon
so has part: feature:14409851-14409995:-1:exon
so has part: feature:14408430-14408643:-1:exon
so has part: feature:14407710-14407947:-1:exon
so has part: feature:14407305-14407379:-1:exon
so has part: feature:14405259-14405445:-1:exon
so has part: feature:14400577-14400748:-1:exon
so has part: feature:14399151-14399371:-1:exon
so has part: feature:14396499-14396693:-1:exon
so has part: feature:14395178-14395345:-1:exon
so has part: feature:14394471-14394533:-1:exon

XP_003263863.1
type: Protein
SIO_000068: ncbiprotein

position:14394471:-1
position: 14394471
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14457838:-1
position: 14457838
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14457659-14457838:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:14451702-14451905:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:14451116-14451214:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:14449357-14449587:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:14446958-14447010:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:14445470-14445650:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:14435584-14435757:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:14434818-14435008:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:14433740-14433875:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:14430612-14431421:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:14430106-14430147:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:14424766-14424955:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:14423683-14423922:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:14422620-14422773:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:14421258-14421402:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:14420683-14420869:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:14417156-14417315:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:14416100-14416204:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:14411422-14411564:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:14410200-14410335:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:14409851-14409995:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:14408430-14408643:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:14407710-14407947:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:14407305-14407379:-1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:14405259-14405445:-1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:14400577-14400748:-1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:14399151-14399371:-1:exon

urn:…
SIO_000300: 28
SIO_000628: feature:14396499-14396693:-1:exon

urn:…
SIO_000300: 29
SIO_000628: feature:14395178-14395345:-1:exon

urn:…
SIO_000300: 30
SIO_000628: feature:14394471-14394533:-1:exon

RWDD2B
type: Gene
subclass of: SO_0000704
RO_0002162: 61853
gene: RWDD2B
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(14462384..14481680)
location: region:14462384-14481680:-1
so has part: feature:14462384-14481680:-1:exon
subclass of: SO_0000010

100592210
type: Gene
SIO_000068: ncbigene

position:14462384:-1
position: 14462384
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14481680:-1
position: 14481680
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14462384-14481680:-1:exon

RWDD2B
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 61853
gene: RWDD2B
product: RWD domain containing 2B
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 23 ESTs, and 97% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XM_030806126.1
SIO_010081: RWDD2B
subclass of: SO_0000673
so part of: RWDD2B
location: complement(join(14462384..14462957,14470238..14470395,14471508..14471870,14471987..14472054,14472142..14472368,14481510..14481680))
location: region:14462384-14481680:-1
so has part: feature:14481510-14481680:-1:exon
so has part: feature:14472142-14472368:-1:exon
so has part: feature:14471987-14472054:-1:exon
so has part: feature:14471508-14471870:-1:exon
so has part: feature:14470238-14470395:-1:exon
so has part: feature:14462384-14462957:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:14481510-14481680:-1:exon

position:14481510:-1
position: 14481510
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:14472142-14472368:-1:exon

position:14472142:-1
position: 14472142
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14472368:-1
position: 14472368
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:14471987-14472054:-1:exon

position:14471987:-1
position: 14471987
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14472054:-1
position: 14472054
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:14471508-14471870:-1:exon

position:14471508:-1
position: 14471508
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14471870:-1
position: 14471870
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:14470238-14470395:-1:exon

position:14470238:-1
position: 14470238
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14470395:-1
position: 14470395
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:14462384-14462957:-1:exon

position:14462957:-1
position: 14462957
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

RWDD2B
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61853
gene: RWDD2B
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: RWD domain-containing protein 2B
translation: MKIELSVQPWNPGYSSEGATAQETYTCPKMIEIEQAEAQLAELDLLASMFPGENELIVNDQLAVAELKDCIEKKTMEGRSSKVYFTINMNLDVSEEALGMFSLACILPFKYPAVLPEITVRSVLLSRSQQTQLNTDLTAFLQKHCHGDVCVLNATEWVREHASGYVSRDTSSSPTTGSTVQSADLIFTRLWIYSHHIYNKCKRKNILEWAKELSLSGFSMPGKPGVVCVEGPQSACEEFWSRLRKLNWKRILIRHREDIPFDGTNDEMERQRKFPIFEEKVFSVNGARGNHMDFVFKMSKRGHGRSSGVKFRISLGLPVGAVINCADNTGAKNLYIISMKEIKGQLNRLSAAGVGDMVMATVKKGKPELRKMVHPAAVI
SIO_010081: RWDD2B
subclass of: SO_0000673
so part of: RWDD2B
location: complement(join(14462701..14462957,14470238..14470395,14471508..14471870,14471987..14472054,14472142..14472368,14481510..14481576))
location: region:14462701-14481576:-1
so has part: feature:14481510-14481576:-1:exon
so has part: feature:14472142-14472368:-1:exon
so has part: feature:14471987-14472054:-1:exon
so has part: feature:14471508-14471870:-1:exon
so has part: feature:14470238-14470395:-1:exon
so has part: feature:14462701-14462957:-1:exon

XP_030661986.1
type: Protein
SIO_000068: ncbiprotein

position:14462701:-1
position: 14462701
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14481576:-1
position: 14481576
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14481510-14481576:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:14472142-14472368:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:14471987-14472054:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:14471508-14471870:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:14470238-14470395:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:14462701-14462957:-1:exon

USP16
type: Gene
subclass of: SO_0000704
RO_0002162: 61853
gene: USP16
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 14486135..14516108
location: region:14486135-14516108:1
so has part: feature:14486135-14516108:1:exon
subclass of: SO_0000010

100592764
type: Gene
SIO_000068: ncbigene

position:14486135:1
position: 14486135
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14516108:1
position: 14516108
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14486135-14516108:1:exon

USP16
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 61853
gene: USP16
product: ubiquitin specific peptidase 16, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 194 ESTs, 11 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XM_030806323.1
SIO_010081: USP16
subclass of: SO_0000673
so part of: USP16
location: join(14486135..14486294,14487232..14487294,14489387..14489488,14492118..14492296,14496338..14496441,14497779..14497882,14498778..14498965,14499840..14499935,14500529..14500659,14500964..14501051,14502101..14502179,14503514..14503605,14503973..14504029,14505059..14505235,14508322..14508985,14510347..14510441,14511690..14511776,14515419..14515575,14515683..14516108)
location: region:14486135-14516108:1
so has part: feature:14486135-14486294:1:exon
so has part: feature:14487232-14487294:1:exon
so has part: feature:14489387-14489488:1:exon
so has part: feature:14492118-14492296:1:exon
so has part: feature:14496338-14496441:1:exon
so has part: feature:14497779-14497882:1:exon
so has part: feature:14498778-14498965:1:exon
so has part: feature:14499840-14499935:1:exon
so has part: feature:14500529-14500659:1:exon
so has part: feature:14500964-14501051:1:exon
so has part: feature:14502101-14502179:1:exon
so has part: feature:14503514-14503605:1:exon
so has part: feature:14503973-14504029:1:exon
so has part: feature:14505059-14505235:1:exon
so has part: feature:14508322-14508985:1:exon
so has part: feature:14510347-14510441:1:exon
so has part: feature:14511690-14511776:1:exon
so has part: feature:14515419-14515575:1:exon
so has part: feature:14515683-14516108:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:14486135-14486294:1:exon

position:14486294:1
position: 14486294
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:14487232-14487294:1:exon

position:14487232:1
position: 14487232
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14487294:1
position: 14487294
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:14489387-14489488:1:exon

position:14489387:1
position: 14489387
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14489488:1
position: 14489488
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:14492118-14492296:1:exon

position:14492118:1
position: 14492118
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14492296:1
position: 14492296
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:14496338-14496441:1:exon

position:14496338:1
position: 14496338
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14496441:1
position: 14496441
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:14497779-14497882:1:exon

position:14497779:1
position: 14497779
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14497882:1
position: 14497882
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:14498778-14498965:1:exon

position:14498778:1
position: 14498778
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14498965:1
position: 14498965
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:14499840-14499935:1:exon

position:14499840:1
position: 14499840
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14499935:1
position: 14499935
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:14500529-14500659:1:exon

position:14500529:1
position: 14500529
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14500659:1
position: 14500659
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:14500964-14501051:1:exon

position:14500964:1
position: 14500964
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14501051:1
position: 14501051
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:14502101-14502179:1:exon

position:14502101:1
position: 14502101
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14502179:1
position: 14502179
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:14503514-14503605:1:exon

position:14503514:1
position: 14503514
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14503605:1
position: 14503605
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:14503973-14504029:1:exon

position:14503973:1
position: 14503973
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14504029:1
position: 14504029
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:14505059-14505235:1:exon

position:14505059:1
position: 14505059
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14505235:1
position: 14505235
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:14508322-14508985:1:exon

position:14508322:1
position: 14508322
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14508985:1
position: 14508985
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:14510347-14510441:1:exon

position:14510347:1
position: 14510347
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14510441:1
position: 14510441
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:14511690-14511776:1:exon

position:14511690:1
position: 14511690
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14511776:1
position: 14511776
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:14515419-14515575:1:exon

position:14515419:1
position: 14515419
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14515575:1
position: 14515575
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:14515683-14516108:1:exon

position:14515683:1
position: 14515683
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

USP16
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 61853
gene: USP16
product: ubiquitin specific peptidase 16, transcript variant X5
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 mRNAs, 336 ESTs, 9 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XM_030806326.1
SIO_010081: USP16
subclass of: SO_0000673
so part of: USP16
location: join(14486135..14486294,14489387..14489488,14492118..14492296,14496338..14496441,14497779..14497882,14498781..14498965,14499840..14499935,14500529..14500659,14500964..14501051,14502101..14502179,14503514..14503605,14503973..14504029,14505059..14505235,14508322..14508985,14510347..14510441,14511690..14511776,14515419..14515575,14515683..14516108)
location: region:14486135-14516108:1
so has part: feature:14486135-14486294:1:exon
so has part: feature:14489387-14489488:1:exon
so has part: feature:14492118-14492296:1:exon
so has part: feature:14496338-14496441:1:exon
so has part: feature:14497779-14497882:1:exon
so has part: feature:14498781-14498965:1:exon
so has part: feature:14499840-14499935:1:exon
so has part: feature:14500529-14500659:1:exon
so has part: feature:14500964-14501051:1:exon
so has part: feature:14502101-14502179:1:exon
so has part: feature:14503514-14503605:1:exon
so has part: feature:14503973-14504029:1:exon
so has part: feature:14505059-14505235:1:exon
so has part: feature:14508322-14508985:1:exon
so has part: feature:14510347-14510441:1:exon
so has part: feature:14511690-14511776:1:exon
so has part: feature:14515419-14515575:1:exon
so has part: feature:14515683-14516108:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:14486135-14486294:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:14489387-14489488:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:14492118-14492296:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:14496338-14496441:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:14497779-14497882:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:14498781-14498965:1:exon

position:14498781:1
position: 14498781
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:14499840-14499935:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:14500529-14500659:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:14500964-14501051:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:14502101-14502179:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:14503514-14503605:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:14503973-14504029:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:14505059-14505235:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:14508322-14508985:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:14510347-14510441:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:14511690-14511776:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:14515419-14515575:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:14515683-14516108:1:exon

USP16
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 61853
gene: USP16
product: ubiquitin specific peptidase 16, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 mRNAs, 338 ESTs, 11 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XM_003263817.3
SIO_010081: USP16
subclass of: SO_0000673
so part of: USP16
location: join(14486138..14486294,14489387..14489488,14492118..14492296,14496338..14496441,14497779..14497882,14498778..14498965,14499840..14499935,14500529..14500659,14500964..14501051,14502101..14502179,14503514..14503605,14503973..14504029,14505059..14505235,14508322..14508985,14510347..14510441,14511690..14511776,14515419..14515575,14515683..14516108)
location: region:14486138-14516108:1
so has part: feature:14486138-14486294:1:exon
so has part: feature:14489387-14489488:1:exon
so has part: feature:14492118-14492296:1:exon
so has part: feature:14496338-14496441:1:exon
so has part: feature:14497779-14497882:1:exon
so has part: feature:14498778-14498965:1:exon
so has part: feature:14499840-14499935:1:exon
so has part: feature:14500529-14500659:1:exon
so has part: feature:14500964-14501051:1:exon
so has part: feature:14502101-14502179:1:exon
so has part: feature:14503514-14503605:1:exon
so has part: feature:14503973-14504029:1:exon
so has part: feature:14505059-14505235:1:exon
so has part: feature:14508322-14508985:1:exon
so has part: feature:14510347-14510441:1:exon
so has part: feature:14511690-14511776:1:exon
so has part: feature:14515419-14515575:1:exon
so has part: feature:14515683-14516108:1:exon

position:14486138:1
position: 14486138
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14486138-14486294:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:14489387-14489488:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:14492118-14492296:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:14496338-14496441:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:14497779-14497882:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:14498778-14498965:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:14499840-14499935:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:14500529-14500659:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:14500964-14501051:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:14502101-14502179:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:14503514-14503605:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:14503973-14504029:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:14505059-14505235:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:14508322-14508985:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:14510347-14510441:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:14511690-14511776:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:14515419-14515575:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:14515683-14516108:1:exon

USP16
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 61853
gene: USP16
product: ubiquitin specific peptidase 16, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 176 ESTs, 11 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XM_030806324.1
SIO_010081: USP16
subclass of: SO_0000673
so part of: USP16
location: join(14486522..14486570,14489387..14489488,14492118..14492296,14496338..14496441,14497779..14497882,14498778..14498965,14499840..14499935,14500529..14500659,14500964..14501051,14502101..14502179,14503514..14503605,14503973..14504029,14505059..14505235,14508322..14508985,14510347..14510441,14511690..14511776,14515419..14515575,14515683..14516108)
location: region:14486522-14516108:1
so has part: feature:14486522-14486570:1:exon
so has part: feature:14489387-14489488:1:exon
so has part: feature:14492118-14492296:1:exon
so has part: feature:14496338-14496441:1:exon
so has part: feature:14497779-14497882:1:exon
so has part: feature:14498778-14498965:1:exon
so has part: feature:14499840-14499935:1:exon
so has part: feature:14500529-14500659:1:exon
so has part: feature:14500964-14501051:1:exon
so has part: feature:14502101-14502179:1:exon
so has part: feature:14503514-14503605:1:exon
so has part: feature:14503973-14504029:1:exon
so has part: feature:14505059-14505235:1:exon
so has part: feature:14508322-14508985:1:exon
so has part: feature:14510347-14510441:1:exon
so has part: feature:14511690-14511776:1:exon
so has part: feature:14515419-14515575:1:exon
so has part: feature:14515683-14516108:1:exon

position:14486522:1
position: 14486522
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14486522-14486570:1:exon

position:14486570:1
position: 14486570
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:14489387-14489488:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:14492118-14492296:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:14496338-14496441:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:14497779-14497882:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:14498778-14498965:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:14499840-14499935:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:14500529-14500659:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:14500964-14501051:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:14502101-14502179:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:14503514-14503605:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:14503973-14504029:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:14505059-14505235:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:14508322-14508985:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:14510347-14510441:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:14511690-14511776:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:14515419-14515575:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:14515683-14516108:1:exon

USP16
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 61853
gene: USP16
product: ubiquitin specific peptidase 16, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 175 ESTs, 11 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XM_030806325.1
SIO_010081: USP16
subclass of: SO_0000673
so part of: USP16
location: join(14488190..14488226,14489387..14489488,14492118..14492296,14496338..14496441,14497779..14497882,14498778..14498965,14499840..14499935,14500529..14500659,14500964..14501051,14502101..14502179,14503514..14503605,14503973..14504029,14505059..14505235,14508322..14508985,14510347..14510441,14511690..14511776,14515419..14515575,14515683..14516108)
location: region:14488190-14516108:1
so has part: feature:14488190-14488226:1:exon
so has part: feature:14489387-14489488:1:exon
so has part: feature:14492118-14492296:1:exon
so has part: feature:14496338-14496441:1:exon
so has part: feature:14497779-14497882:1:exon
so has part: feature:14498778-14498965:1:exon
so has part: feature:14499840-14499935:1:exon
so has part: feature:14500529-14500659:1:exon
so has part: feature:14500964-14501051:1:exon
so has part: feature:14502101-14502179:1:exon
so has part: feature:14503514-14503605:1:exon
so has part: feature:14503973-14504029:1:exon
so has part: feature:14505059-14505235:1:exon
so has part: feature:14508322-14508985:1:exon
so has part: feature:14510347-14510441:1:exon
so has part: feature:14511690-14511776:1:exon
so has part: feature:14515419-14515575:1:exon
so has part: feature:14515683-14516108:1:exon

position:14488190:1
position: 14488190
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14488190-14488226:1:exon

position:14488226:1
position: 14488226
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:14489387-14489488:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:14492118-14492296:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:14496338-14496441:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:14497779-14497882:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:14498778-14498965:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:14499840-14499935:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:14500529-14500659:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:14500964-14501051:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:14502101-14502179:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:14503514-14503605:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:14503973-14504029:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:14505059-14505235:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:14508322-14508985:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:14510347-14510441:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:14511690-14511776:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:14515419-14515575:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:14515683-14516108:1:exon

USP16
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61853
gene: USP16
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ubiquitin carboxyl-terminal hydrolase 16 isoform X1
translation: MGKKRTKGKTVPVDDSSETLEPMCRHIRKGLEQGNLKKALVNVEWNICQDCKTDNKVKDKAEEETEEKPSVWLCLKCGHQGCGRNSQEQHALKHYLTPRSEPHCLVLSLDNWSVWCYICDNEVQYCSSNQLGQVVDYVRKQAGITTPKPAEKDNGNIELENKKLEKESKNEQEREKKENMAKENPPVNSPSQITVKGLSNLGNTCFFNAVMQNLSQTPVLRELLKEVKMSGTIVKIEPPDLALTEPLEINLEPPGPLTLAMSQFLNEMQETKKGVVTPKELFSQVCKKAVRFKGYQQQDSQELLRYLLDGMRAEEHQRVSKGILKAFGNSTEKLDEELKNKVKDYEKKKSIPSFVDRIFGGELTSTIMCDQCRTVSLVHESFLDLSLPVLDDQSGKKSVNDKNLKKTMEDEDQDSEEEKDNDSYIKERSDIPSGTSKHLQKKAKKQAKKQAKNQRRQQKIQGKVLHLNDICTIDHPEDNEYEAEMSLQGEVNIKSNHISQEVVMHKEYCVNQKDLNGQEKMIESVTDNQKSTEEVDMKNINMDNDLEVLTSSPTDCTRNLNGAYLTEGSNGEVDISNGFKNLNLNAALHPDEINIEILNDSHTPGTKVYEVVNEDPETAFCTLANREVFNTDECSIQHCLYQFTRNEKLRDANKLLCEVCTRRQCNGPKANIKGERKHVYTNAKKQMLISLAPPVLTLHLKRFQQAGFNLRKVNKHIKFPEILDLAPFCTLKCKNVAEENTRVLYSLYGVVEHSGTMRSGHYTAYAKARTANSHLSNLVLHGDIPQDFEMESKGQWFHISDTHVQAVPTTKVLNSQAYLLFYERIL
SIO_010081: USP16
subclass of: SO_0000673
so part of: USP16
location: join(14489428..14489488,14492118..14492296,14496338..14496441,14497779..14497882,14498778..14498965,14499840..14499935,14500529..14500659,14500964..14501051,14502101..14502179,14503514..14503605,14503973..14504029,14505059..14505235,14508322..14508985,14510347..14510441,14511690..14511776,14515419..14515575,14515683..14515804)
location: region:14489428-14515804:1
so has part: feature:14489428-14489488:1:exon
so has part: feature:14492118-14492296:1:exon
so has part: feature:14496338-14496441:1:exon
so has part: feature:14497779-14497882:1:exon
so has part: feature:14498778-14498965:1:exon
so has part: feature:14499840-14499935:1:exon
so has part: feature:14500529-14500659:1:exon
so has part: feature:14500964-14501051:1:exon
so has part: feature:14502101-14502179:1:exon
so has part: feature:14503514-14503605:1:exon
so has part: feature:14503973-14504029:1:exon
so has part: feature:14505059-14505235:1:exon
so has part: feature:14508322-14508985:1:exon
so has part: feature:14510347-14510441:1:exon
so has part: feature:14511690-14511776:1:exon
so has part: feature:14515419-14515575:1:exon
so has part: feature:14515683-14515804:1:exon

XP_030662183.1
type: Protein
SIO_000068: ncbiprotein

position:14489428:1
position: 14489428
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14515804:1
position: 14515804
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14489428-14489488:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:14492118-14492296:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:14496338-14496441:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:14497779-14497882:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:14498778-14498965:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:14499840-14499935:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:14500529-14500659:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:14500964-14501051:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:14502101-14502179:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:14503514-14503605:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:14503973-14504029:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:14505059-14505235:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:14508322-14508985:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:14510347-14510441:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:14511690-14511776:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:14515419-14515575:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:14515683-14515804:1:exon

USP16
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61853
gene: USP16
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ubiquitin carboxyl-terminal hydrolase 16 isoform X1
translation: MGKKRTKGKTVPVDDSSETLEPMCRHIRKGLEQGNLKKALVNVEWNICQDCKTDNKVKDKAEEETEEKPSVWLCLKCGHQGCGRNSQEQHALKHYLTPRSEPHCLVLSLDNWSVWCYICDNEVQYCSSNQLGQVVDYVRKQAGITTPKPAEKDNGNIELENKKLEKESKNEQEREKKENMAKENPPVNSPSQITVKGLSNLGNTCFFNAVMQNLSQTPVLRELLKEVKMSGTIVKIEPPDLALTEPLEINLEPPGPLTLAMSQFLNEMQETKKGVVTPKELFSQVCKKAVRFKGYQQQDSQELLRYLLDGMRAEEHQRVSKGILKAFGNSTEKLDEELKNKVKDYEKKKSIPSFVDRIFGGELTSTIMCDQCRTVSLVHESFLDLSLPVLDDQSGKKSVNDKNLKKTMEDEDQDSEEEKDNDSYIKERSDIPSGTSKHLQKKAKKQAKKQAKNQRRQQKIQGKVLHLNDICTIDHPEDNEYEAEMSLQGEVNIKSNHISQEVVMHKEYCVNQKDLNGQEKMIESVTDNQKSTEEVDMKNINMDNDLEVLTSSPTDCTRNLNGAYLTEGSNGEVDISNGFKNLNLNAALHPDEINIEILNDSHTPGTKVYEVVNEDPETAFCTLANREVFNTDECSIQHCLYQFTRNEKLRDANKLLCEVCTRRQCNGPKANIKGERKHVYTNAKKQMLISLAPPVLTLHLKRFQQAGFNLRKVNKHIKFPEILDLAPFCTLKCKNVAEENTRVLYSLYGVVEHSGTMRSGHYTAYAKARTANSHLSNLVLHGDIPQDFEMESKGQWFHISDTHVQAVPTTKVLNSQAYLLFYERIL
SIO_010081: USP16
subclass of: SO_0000673
so part of: USP16
location: join(14489428..14489488,14492118..14492296,14496338..14496441,14497779..14497882,14498778..14498965,14499840..14499935,14500529..14500659,14500964..14501051,14502101..14502179,14503514..14503605,14503973..14504029,14505059..14505235,14508322..14508985,14510347..14510441,14511690..14511776,14515419..14515575,14515683..14515804)
location: region:14489428-14515804:1
so has part: feature:14489428-14489488:1:exon
so has part: feature:14492118-14492296:1:exon
so has part: feature:14496338-14496441:1:exon
so has part: feature:14497779-14497882:1:exon
so has part: feature:14498778-14498965:1:exon
so has part: feature:14499840-14499935:1:exon
so has part: feature:14500529-14500659:1:exon
so has part: feature:14500964-14501051:1:exon
so has part: feature:14502101-14502179:1:exon
so has part: feature:14503514-14503605:1:exon
so has part: feature:14503973-14504029:1:exon
so has part: feature:14505059-14505235:1:exon
so has part: feature:14508322-14508985:1:exon
so has part: feature:14510347-14510441:1:exon
so has part: feature:14511690-14511776:1:exon
so has part: feature:14515419-14515575:1:exon
so has part: feature:14515683-14515804:1:exon

XP_030662184.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14489428-14489488:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:14492118-14492296:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:14496338-14496441:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:14497779-14497882:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:14498778-14498965:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:14499840-14499935:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:14500529-14500659:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:14500964-14501051:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:14502101-14502179:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:14503514-14503605:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:14503973-14504029:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:14505059-14505235:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:14508322-14508985:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:14510347-14510441:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:14511690-14511776:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:14515419-14515575:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:14515683-14515804:1:exon

USP16
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61853
gene: USP16
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ubiquitin carboxyl-terminal hydrolase 16 isoform X1
translation: MGKKRTKGKTVPVDDSSETLEPMCRHIRKGLEQGNLKKALVNVEWNICQDCKTDNKVKDKAEEETEEKPSVWLCLKCGHQGCGRNSQEQHALKHYLTPRSEPHCLVLSLDNWSVWCYICDNEVQYCSSNQLGQVVDYVRKQAGITTPKPAEKDNGNIELENKKLEKESKNEQEREKKENMAKENPPVNSPSQITVKGLSNLGNTCFFNAVMQNLSQTPVLRELLKEVKMSGTIVKIEPPDLALTEPLEINLEPPGPLTLAMSQFLNEMQETKKGVVTPKELFSQVCKKAVRFKGYQQQDSQELLRYLLDGMRAEEHQRVSKGILKAFGNSTEKLDEELKNKVKDYEKKKSIPSFVDRIFGGELTSTIMCDQCRTVSLVHESFLDLSLPVLDDQSGKKSVNDKNLKKTMEDEDQDSEEEKDNDSYIKERSDIPSGTSKHLQKKAKKQAKKQAKNQRRQQKIQGKVLHLNDICTIDHPEDNEYEAEMSLQGEVNIKSNHISQEVVMHKEYCVNQKDLNGQEKMIESVTDNQKSTEEVDMKNINMDNDLEVLTSSPTDCTRNLNGAYLTEGSNGEVDISNGFKNLNLNAALHPDEINIEILNDSHTPGTKVYEVVNEDPETAFCTLANREVFNTDECSIQHCLYQFTRNEKLRDANKLLCEVCTRRQCNGPKANIKGERKHVYTNAKKQMLISLAPPVLTLHLKRFQQAGFNLRKVNKHIKFPEILDLAPFCTLKCKNVAEENTRVLYSLYGVVEHSGTMRSGHYTAYAKARTANSHLSNLVLHGDIPQDFEMESKGQWFHISDTHVQAVPTTKVLNSQAYLLFYERIL
SIO_010081: USP16
subclass of: SO_0000673
so part of: USP16
location: join(14489428..14489488,14492118..14492296,14496338..14496441,14497779..14497882,14498778..14498965,14499840..14499935,14500529..14500659,14500964..14501051,14502101..14502179,14503514..14503605,14503973..14504029,14505059..14505235,14508322..14508985,14510347..14510441,14511690..14511776,14515419..14515575,14515683..14515804)
location: region:14489428-14515804:1
so has part: feature:14489428-14489488:1:exon
so has part: feature:14492118-14492296:1:exon
so has part: feature:14496338-14496441:1:exon
so has part: feature:14497779-14497882:1:exon
so has part: feature:14498778-14498965:1:exon
so has part: feature:14499840-14499935:1:exon
so has part: feature:14500529-14500659:1:exon
so has part: feature:14500964-14501051:1:exon
so has part: feature:14502101-14502179:1:exon
so has part: feature:14503514-14503605:1:exon
so has part: feature:14503973-14504029:1:exon
so has part: feature:14505059-14505235:1:exon
so has part: feature:14508322-14508985:1:exon
so has part: feature:14510347-14510441:1:exon
so has part: feature:14511690-14511776:1:exon
so has part: feature:14515419-14515575:1:exon
so has part: feature:14515683-14515804:1:exon

XP_030662185.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14489428-14489488:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:14492118-14492296:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:14496338-14496441:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:14497779-14497882:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:14498778-14498965:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:14499840-14499935:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:14500529-14500659:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:14500964-14501051:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:14502101-14502179:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:14503514-14503605:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:14503973-14504029:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:14505059-14505235:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:14508322-14508985:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:14510347-14510441:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:14511690-14511776:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:14515419-14515575:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:14515683-14515804:1:exon

USP16
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61853
gene: USP16
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ubiquitin carboxyl-terminal hydrolase 16 isoform X1
translation: MGKKRTKGKTVPVDDSSETLEPMCRHIRKGLEQGNLKKALVNVEWNICQDCKTDNKVKDKAEEETEEKPSVWLCLKCGHQGCGRNSQEQHALKHYLTPRSEPHCLVLSLDNWSVWCYICDNEVQYCSSNQLGQVVDYVRKQAGITTPKPAEKDNGNIELENKKLEKESKNEQEREKKENMAKENPPVNSPSQITVKGLSNLGNTCFFNAVMQNLSQTPVLRELLKEVKMSGTIVKIEPPDLALTEPLEINLEPPGPLTLAMSQFLNEMQETKKGVVTPKELFSQVCKKAVRFKGYQQQDSQELLRYLLDGMRAEEHQRVSKGILKAFGNSTEKLDEELKNKVKDYEKKKSIPSFVDRIFGGELTSTIMCDQCRTVSLVHESFLDLSLPVLDDQSGKKSVNDKNLKKTMEDEDQDSEEEKDNDSYIKERSDIPSGTSKHLQKKAKKQAKKQAKNQRRQQKIQGKVLHLNDICTIDHPEDNEYEAEMSLQGEVNIKSNHISQEVVMHKEYCVNQKDLNGQEKMIESVTDNQKSTEEVDMKNINMDNDLEVLTSSPTDCTRNLNGAYLTEGSNGEVDISNGFKNLNLNAALHPDEINIEILNDSHTPGTKVYEVVNEDPETAFCTLANREVFNTDECSIQHCLYQFTRNEKLRDANKLLCEVCTRRQCNGPKANIKGERKHVYTNAKKQMLISLAPPVLTLHLKRFQQAGFNLRKVNKHIKFPEILDLAPFCTLKCKNVAEENTRVLYSLYGVVEHSGTMRSGHYTAYAKARTANSHLSNLVLHGDIPQDFEMESKGQWFHISDTHVQAVPTTKVLNSQAYLLFYERIL
SIO_010081: USP16
subclass of: SO_0000673
so part of: USP16
location: join(14489428..14489488,14492118..14492296,14496338..14496441,14497779..14497882,14498778..14498965,14499840..14499935,14500529..14500659,14500964..14501051,14502101..14502179,14503514..14503605,14503973..14504029,14505059..14505235,14508322..14508985,14510347..14510441,14511690..14511776,14515419..14515575,14515683..14515804)
location: region:14489428-14515804:1
so has part: feature:14489428-14489488:1:exon
so has part: feature:14492118-14492296:1:exon
so has part: feature:14496338-14496441:1:exon
so has part: feature:14497779-14497882:1:exon
so has part: feature:14498778-14498965:1:exon
so has part: feature:14499840-14499935:1:exon
so has part: feature:14500529-14500659:1:exon
so has part: feature:14500964-14501051:1:exon
so has part: feature:14502101-14502179:1:exon
so has part: feature:14503514-14503605:1:exon
so has part: feature:14503973-14504029:1:exon
so has part: feature:14505059-14505235:1:exon
so has part: feature:14508322-14508985:1:exon
so has part: feature:14510347-14510441:1:exon
so has part: feature:14511690-14511776:1:exon
so has part: feature:14515419-14515575:1:exon
so has part: feature:14515683-14515804:1:exon

XP_003263865.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14489428-14489488:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:14492118-14492296:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:14496338-14496441:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:14497779-14497882:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:14498778-14498965:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:14499840-14499935:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:14500529-14500659:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:14500964-14501051:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:14502101-14502179:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:14503514-14503605:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:14503973-14504029:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:14505059-14505235:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:14508322-14508985:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:14510347-14510441:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:14511690-14511776:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:14515419-14515575:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:14515683-14515804:1:exon

USP16
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61853
gene: USP16
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ubiquitin carboxyl-terminal hydrolase 16 isoform X2
translation: MGKKRTKGKTVPVDDSSETLEPMCRHIRKGLEQGNLKKALVNVEWNICQDCKTDNKVKDKAEEETEEKPSVWLCLKCGHQGCGRNSQEQHALKHYLTPRSEPHCLVLSLDNWSVWCYICDNEVQYCSSNQLGQVVDYVRKQAGITTPKPEKDNGNIELENKKLEKESKNEQEREKKENMAKENPPVNSPSQITVKGLSNLGNTCFFNAVMQNLSQTPVLRELLKEVKMSGTIVKIEPPDLALTEPLEINLEPPGPLTLAMSQFLNEMQETKKGVVTPKELFSQVCKKAVRFKGYQQQDSQELLRYLLDGMRAEEHQRVSKGILKAFGNSTEKLDEELKNKVKDYEKKKSIPSFVDRIFGGELTSTIMCDQCRTVSLVHESFLDLSLPVLDDQSGKKSVNDKNLKKTMEDEDQDSEEEKDNDSYIKERSDIPSGTSKHLQKKAKKQAKKQAKNQRRQQKIQGKVLHLNDICTIDHPEDNEYEAEMSLQGEVNIKSNHISQEVVMHKEYCVNQKDLNGQEKMIESVTDNQKSTEEVDMKNINMDNDLEVLTSSPTDCTRNLNGAYLTEGSNGEVDISNGFKNLNLNAALHPDEINIEILNDSHTPGTKVYEVVNEDPETAFCTLANREVFNTDECSIQHCLYQFTRNEKLRDANKLLCEVCTRRQCNGPKANIKGERKHVYTNAKKQMLISLAPPVLTLHLKRFQQAGFNLRKVNKHIKFPEILDLAPFCTLKCKNVAEENTRVLYSLYGVVEHSGTMRSGHYTAYAKARTANSHLSNLVLHGDIPQDFEMESKGQWFHISDTHVQAVPTTKVLNSQAYLLFYERIL
SIO_010081: USP16
subclass of: SO_0000673
so part of: USP16
location: join(14489428..14489488,14492118..14492296,14496338..14496441,14497779..14497882,14498781..14498965,14499840..14499935,14500529..14500659,14500964..14501051,14502101..14502179,14503514..14503605,14503973..14504029,14505059..14505235,14508322..14508985,14510347..14510441,14511690..14511776,14515419..14515575,14515683..14515804)
location: region:14489428-14515804:1
so has part: feature:14489428-14489488:1:exon
so has part: feature:14492118-14492296:1:exon
so has part: feature:14496338-14496441:1:exon
so has part: feature:14497779-14497882:1:exon
so has part: feature:14498781-14498965:1:exon
so has part: feature:14499840-14499935:1:exon
so has part: feature:14500529-14500659:1:exon
so has part: feature:14500964-14501051:1:exon
so has part: feature:14502101-14502179:1:exon
so has part: feature:14503514-14503605:1:exon
so has part: feature:14503973-14504029:1:exon
so has part: feature:14505059-14505235:1:exon
so has part: feature:14508322-14508985:1:exon
so has part: feature:14510347-14510441:1:exon
so has part: feature:14511690-14511776:1:exon
so has part: feature:14515419-14515575:1:exon
so has part: feature:14515683-14515804:1:exon

XP_030662186.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14489428-14489488:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:14492118-14492296:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:14496338-14496441:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:14497779-14497882:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:14498781-14498965:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:14499840-14499935:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:14500529-14500659:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:14500964-14501051:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:14502101-14502179:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:14503514-14503605:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:14503973-14504029:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:14505059-14505235:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:14508322-14508985:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:14510347-14510441:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:14511690-14511776:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:14515419-14515575:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:14515683-14515804:1:exon

CCT8
type: Gene
subclass of: SO_0000704
RO_0002162: 61853
gene: CCT8
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(14517651..14535494)
location: region:14517651-14535494:-1
so has part: feature:14517651-14535494:-1:exon
subclass of: SO_0000010

100593324
type: Gene
SIO_000068: ncbigene

position:14517651:-1
position: 14517651
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14535494:-1
position: 14535494
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14517651-14535494:-1:exon

CCT8
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 61853
gene: CCT8
product: chaperonin containing TCP1 subunit 8
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 mRNAs, 1885 ESTs, 13 Proteins, and 94% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XM_003263819.4
SIO_010081: CCT8
subclass of: SO_0000673
so part of: CCT8
location: complement(join(14517651..14517878,14521975..14522094,14522683..14522847,14522924..14522995,14523560..14523675,14523760..14523847,14523922..14523988,14524776..14524954,14526395..14526532,14528145..14528206,14528320..14528500,14528962..14529111,14531133..14531212,14531936..14532026,14535228..14535494))
location: region:14517651-14535494:-1
so has part: feature:14535228-14535494:-1:exon
so has part: feature:14531936-14532026:-1:exon
so has part: feature:14531133-14531212:-1:exon
so has part: feature:14528962-14529111:-1:exon
so has part: feature:14528320-14528500:-1:exon
so has part: feature:14528145-14528206:-1:exon
so has part: feature:14526395-14526532:-1:exon
so has part: feature:14524776-14524954:-1:exon
so has part: feature:14523922-14523988:-1:exon
so has part: feature:14523760-14523847:-1:exon
so has part: feature:14523560-14523675:-1:exon
so has part: feature:14522924-14522995:-1:exon
so has part: feature:14522683-14522847:-1:exon
so has part: feature:14521975-14522094:-1:exon
so has part: feature:14517651-14517878:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:14535228-14535494:-1:exon

position:14535228:-1
position: 14535228
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:14531936-14532026:-1:exon

position:14531936:-1
position: 14531936
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14532026:-1
position: 14532026
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:14531133-14531212:-1:exon

position:14531133:-1
position: 14531133
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14531212:-1
position: 14531212
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:14528962-14529111:-1:exon

position:14528962:-1
position: 14528962
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14529111:-1
position: 14529111
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:14528320-14528500:-1:exon

position:14528320:-1
position: 14528320
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14528500:-1
position: 14528500
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:14528145-14528206:-1:exon

position:14528145:-1
position: 14528145
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14528206:-1
position: 14528206
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:14526395-14526532:-1:exon

position:14526395:-1
position: 14526395
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14526532:-1
position: 14526532
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:14524776-14524954:-1:exon

position:14524776:-1
position: 14524776
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14524954:-1
position: 14524954
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:14523922-14523988:-1:exon

position:14523922:-1
position: 14523922
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14523988:-1
position: 14523988
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:14523760-14523847:-1:exon

position:14523760:-1
position: 14523760
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14523847:-1
position: 14523847
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:14523560-14523675:-1:exon

position:14523560:-1
position: 14523560
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14523675:-1
position: 14523675
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:14522924-14522995:-1:exon

position:14522924:-1
position: 14522924
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14522995:-1
position: 14522995
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:14522683-14522847:-1:exon

position:14522683:-1
position: 14522683
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14522847:-1
position: 14522847
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:14521975-14522094:-1:exon

position:14521975:-1
position: 14521975
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14522094:-1
position: 14522094
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:14517651-14517878:-1:exon

position:14517878:-1
position: 14517878
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

CCT8
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61853
gene: CCT8
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: T-complex protein 1 subunit theta
translation: MALHVPKAPGFAQMLKEGAKHFSGLEEAVYRNIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATILRELEVQHPAAKMIVMASHMQEQEVGDGTNFVLVFAGALLELAEELLRIGLSVSEVIEGYEIACRKAHEILPNLVCCSAKNLRDTDEVSSLLRTSIMSKQYGNEVFLAKLIAQACVSIFPDSGHFNVDNIRVCKILGSGISSSSVLHGMVFKKETEGDVTSVKDAKIAVYSCPFDGMITETKGTVLIKTAEELMNFSKGEENLMDAQVKAIADTGANVVVTGGKVADMALHYANKYNIMLVRLNSKWDLRRLCKTVGATALPRLTPPVLEEMGHCDSVHLSEVGDTQVVVFKHEKEDGAISTIVLRGSTDNLMDDIERAVDDGVNTFKVLTRDKRLVPGGGATEIELAKQITSYGETCPGLEQYAIKKFAEAFEAIPRALAENSGVKANEVISKLYAVHQEGNKNVGLDIEAEVPAVKDMLEAGILDTYLGKYWAIKLATNAAVTVLRVDQIIMAKPAGGPKPPSGKKDWDDDQND
SIO_010081: CCT8
subclass of: SO_0000673
so part of: CCT8
location: complement(join(14517801..14517878,14521975..14522094,14522683..14522847,14522924..14522995,14523560..14523675,14523760..14523847,14523922..14523988,14524776..14524954,14526395..14526532,14528145..14528206,14528320..14528500,14528962..14529111,14531133..14531212,14531936..14532026,14535228..14535287))
location: region:14517801-14535287:-1
so has part: feature:14535228-14535287:-1:exon
so has part: feature:14531936-14532026:-1:exon
so has part: feature:14531133-14531212:-1:exon
so has part: feature:14528962-14529111:-1:exon
so has part: feature:14528320-14528500:-1:exon
so has part: feature:14528145-14528206:-1:exon
so has part: feature:14526395-14526532:-1:exon
so has part: feature:14524776-14524954:-1:exon
so has part: feature:14523922-14523988:-1:exon
so has part: feature:14523760-14523847:-1:exon
so has part: feature:14523560-14523675:-1:exon
so has part: feature:14522924-14522995:-1:exon
so has part: feature:14522683-14522847:-1:exon
so has part: feature:14521975-14522094:-1:exon
so has part: feature:14517801-14517878:-1:exon

XP_003263867.1
type: Protein
SIO_000068: ncbiprotein

position:14517801:-1
position: 14517801
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14535287:-1
position: 14535287
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14535228-14535287:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:14531936-14532026:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:14531133-14531212:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:14528962-14529111:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:14528320-14528500:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:14528145-14528206:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:14526395-14526532:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:14524776-14524954:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:14523922-14523988:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:14523760-14523847:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:14523560-14523675:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:14522924-14522995:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:14522683-14522847:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:14521975-14522094:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:14517801-14517878:-1:exon

MAP3K7CL
type: Gene
subclass of: SO_0000704
RO_0002162: 61853
gene: MAP3K7CL
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 14547006..14643293
location: region:14547006-14643293:1
so has part: feature:14547006-14643293:1:exon
subclass of: SO_0000010

100594935
type: Gene
SIO_000068: ncbigene

position:14547006:1
position: 14547006
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14643293:1
position: 14643293
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14547006-14643293:1:exon

MAP3K7CL
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 61853
gene: MAP3K7CL
product: MAP3K7 C-terminal like
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 51 ESTs, 5 Proteins, and 80% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_030806352.1
SIO_010081: MAP3K7CL
subclass of: SO_0000673
so part of: MAP3K7CL
location: join(14547006..14547113,14547777..14547881,14553540..14553615,14553706..14553798,14554491..14554633,14616267..14616328,14627006..14627121,14642116..14643293)
location: region:14547006-14643293:1
so has part: feature:14547006-14547113:1:exon
so has part: feature:14547777-14547881:1:exon
so has part: feature:14553540-14553615:1:exon
so has part: feature:14553706-14553798:1:exon
so has part: feature:14554491-14554633:1:exon
so has part: feature:14616267-14616328:1:exon
so has part: feature:14627006-14627121:1:exon
so has part: feature:14642116-14643293:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:14547006-14547113:1:exon

position:14547113:1
position: 14547113
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:14547777-14547881:1:exon

position:14547777:1
position: 14547777
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14547881:1
position: 14547881
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:14553540-14553615:1:exon

position:14553540:1
position: 14553540
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14553615:1
position: 14553615
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:14553706-14553798:1:exon

position:14553706:1
position: 14553706
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14553798:1
position: 14553798
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:14554491-14554633:1:exon

position:14554491:1
position: 14554491
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14554633:1
position: 14554633
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:14616267-14616328:1:exon

position:14616267:1
position: 14616267
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14616328:1
position: 14616328
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:14627006-14627121:1:exon

position:14627006:1
position: 14627006
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14627121:1
position: 14627121
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:14642116-14643293:1:exon

position:14642116:1
position: 14642116
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

MAP3K7CL
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61853
gene: MAP3K7CL
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: MAP3K7 C-terminal-like protein
translation: MVQLIAPLEVMRNEAADLKPLAVSPRLECSGAIRVHYSPDLLGPEMESRYFAQVGLEHLASSNPPXFGFLKCLDYSISVLCSATSLAMLEDHPKVSKLATGDWMLTLKPKSITVPVEIPSSPLDDTPPEDSIPLVFPELDQQLQPLPPCHDSEESMEVFKQHCQIAEEYHEVKKEIALLEQRKKELIAKLDQAEKEKVDAAELVREFEALTEENRTLRLAQSQCVEQLEKLRIQYQKRQGSS
SIO_010081: MAP3K7CL
subclass of: SO_0000673
so part of: MAP3K7CL
location: join(14547825..14547881,14553540..14553615,14553706..14553798,14554491..14554633,14616267..14616328,14627006..14627121,14642116..14642296)
location: region:14547825-14642296:1
so has part: feature:14547825-14547881:1:exon
so has part: feature:14553540-14553615:1:exon
so has part: feature:14553706-14553798:1:exon
so has part: feature:14554491-14554633:1:exon
so has part: feature:14616267-14616328:1:exon
so has part: feature:14627006-14627121:1:exon
so has part: feature:14642116-14642296:1:exon

XP_030662212.1
type: Protein
SIO_000068: ncbiprotein

position:14547825:1
position: 14547825
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14642296:1
position: 14642296
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14547825-14547881:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:14553540-14553615:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:14553706-14553798:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:14554491-14554633:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:14616267-14616328:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:14627006-14627121:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:14642116-14642296:1:exon

LOC115833177
type: Gene
subclass of: SO_0000704
RO_0002162: 61853
gene: LOC115833177
note: Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: complement(14647917..14648131)
location: region:14647917-14648131:-1
so has part: feature:14647917-14648131:-1:exon
subclass of: SO_0000578

115833177
type: Gene
SIO_000068: ncbigene

position:14647917:-1
position: 14647917
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14648131:-1
position: 14648131
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14647917-14648131:-1:exon

LOC115833177
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 61853
nc RNA class: snoRNA
gene: LOC115833177
product: small nucleolar RNA U3
inference: COORDINATES: nucleotide motif:Rfam:12.0:RF00012
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_004028624.1
SIO_010081: LOC115833177
subclass of: SO_0000673
so part of: LOC115833177
location: complement(14647917..14648131)
location: region:14647917-14648131:-1
so has part: feature:14647917-14648131:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:14647917-14648131:-1:exon

LOC101177523
type: Gene
subclass of: SO_0000704
RO_0002162: 61853
gene: LOC101177523
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(14649484..14655227)
location: region:14649484-14655227:-1
so has part: feature:14649484-14655227:-1:exon
subclass of: SO_0000011

101177523
type: Gene
SIO_000068: ncbigene

position:14649484:-1
position: 14649484
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14655227:-1
position: 14655227
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14649484-14655227:-1:exon

LOC101177523
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 61853
nc RNA class: lncRNA
gene: LOC101177523
product: uncharacterized LOC101177523
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 ESTs
transcript id: XR_180270.1
SIO_010081: LOC101177523
subclass of: SO_0000673
so part of: LOC101177523
location: complement(join(14649484..14649687,14655104..14655227))
location: region:14649484-14655227:-1
so has part: feature:14655104-14655227:-1:exon
so has part: feature:14649484-14649687:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:14655104-14655227:-1:exon

position:14655104:-1
position: 14655104
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:14649484-14649687:-1:exon

position:14649687:-1
position: 14649687
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC100594704
type: Gene
subclass of: SO_0000704
RO_0002162: 61853
gene: LOC100594704
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 14714952..14715579
location: region:14714952-14715579:1
so has part: feature:14714952-14715579:1:exon
subclass of: SO_0000010

100594704
type: Gene
SIO_000068: ncbigene

position:14714952:1
position: 14714952
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14715579:1
position: 14715579
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14714952-14715579:1:exon

LOC100594704
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 61853
gene: LOC100594704
product: putative methyl-CpG-binding domain protein 3-like 5
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins
transcript id: XM_030806032.1
SIO_010081: LOC100594704
subclass of: SO_0000673
so part of: LOC100594704
location: 14714952..14715579
location: region:14714952-14715579:1
so has part: feature:14714952-14715579:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:14714952-14715579:1:exon

LOC100594704
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61853
gene: LOC100594704
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: putative methyl-CpG-binding domain protein 3-like 5
translation: MGEPAFTSFPSPLILGKLKRNMMPWALQKKQEIHMAKAHRRQAARSALPVRLTSCIFQRPVTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRRMQALQPCSSQGEGSSLLHLESVLSILAQGMASESLDRAGAEYVHSWPEPTPGQFPAVAGGPTPGVGCQLPLPLSGQLVTHADIRRQARRVKKARERLAEALQADRLARQADMLTGG
SIO_010081: LOC100594704
subclass of: SO_0000673
so part of: LOC100594704
location: 14714952..14715579
location: region:14714952-14715579:1
so has part: feature:14714952-14715579:1:exon

XP_030661892.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14714952-14715579:1:exon

BACH1
type: Gene
subclass of: SO_0000704
RO_0002162: 61853
gene: BACH1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 14766235..14829733
location: region:14766235-14829733:1
so has part: feature:14766235-14829733:1:exon
subclass of: SO_0000010

100595281
type: Gene
SIO_000068: ncbigene

position:14766235:1
position: 14766235
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14829733:1
position: 14829733
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14766235-14829733:1:exon

BACH1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 61853
gene: BACH1
product: BTB domain and CNC homolog 1, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 mRNAs, 164 ESTs, 7 Proteins, and 97% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XM_003263825.3
SIO_010081: BACH1
subclass of: SO_0000673
so part of: BACH1
location: join(14766235..14766396,14788915..14789208,14793722..14795056,14798061..14798267,14810206..14813956)
location: region:14766235-14813956:1
so has part: feature:14766235-14766396:1:exon
so has part: feature:14788915-14789208:1:exon
so has part: feature:14793722-14795056:1:exon
so has part: feature:14798061-14798267:1:exon
so has part: feature:14810206-14813956:1:exon

position:14813956:1
position: 14813956
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14766235-14766396:1:exon

position:14766396:1
position: 14766396
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:14788915-14789208:1:exon

position:14788915:1
position: 14788915
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14789208:1
position: 14789208
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:14793722-14795056:1:exon

position:14793722:1
position: 14793722
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14795056:1
position: 14795056
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:14798061-14798267:1:exon

position:14798061:1
position: 14798061
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14798267:1
position: 14798267
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:14810206-14813956:1:exon

position:14810206:1
position: 14810206
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

BACH1
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 61853
gene: BACH1
product: BTB domain and CNC homolog 1, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 24 ESTs, 2 Proteins, and 68% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XR_004028573.1
SIO_010081: BACH1
so part of: BACH1
location: join(14772624..14772737,14788915..14789208,14793722..14795056,14798061..14798267,14819402..14819580,14820342..14820426,14828872..14829084,14829392..14829733)
location: region:14772624-14829733:1
so has part: feature:14772624-14772737:1:exon
so has part: feature:14788915-14789208:1:exon
so has part: feature:14793722-14795056:1:exon
so has part: feature:14798061-14798267:1:exon
so has part: feature:14819402-14819580:1:exon
so has part: feature:14820342-14820426:1:exon
so has part: feature:14828872-14829084:1:exon
so has part: feature:14829392-14829733:1:exon

position:14772624:1
position: 14772624
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14772624-14772737:1:exon

position:14772737:1
position: 14772737
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:14788915-14789208:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:14793722-14795056:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:14798061-14798267:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:14819402-14819580:1:exon

position:14819402:1
position: 14819402
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14819580:1
position: 14819580
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:14820342-14820426:1:exon

position:14820342:1
position: 14820342
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14820426:1
position: 14820426
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:14828872-14829084:1:exon

position:14828872:1
position: 14828872
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14829084:1
position: 14829084
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:14829392-14829733:1:exon

position:14829392:1
position: 14829392
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

BACH1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 61853
gene: BACH1
product: BTB domain and CNC homolog 1, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 146 ESTs, 7 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XM_030806033.1
SIO_010081: BACH1
subclass of: SO_0000673
so part of: BACH1
location: join(14788860..14789208,14793722..14795056,14798061..14798267,14810206..14813956)
location: region:14788860-14813956:1
so has part: feature:14788860-14789208:1:exon
so has part: feature:14793722-14795056:1:exon
so has part: feature:14798061-14798267:1:exon
so has part: feature:14810206-14813956:1:exon

position:14788860:1
position: 14788860
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14788860-14789208:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:14793722-14795056:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:14798061-14798267:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:14810206-14813956:1:exon

BACH1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61853
gene: BACH1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: transcription regulator protein BACH1
translation: MSLSENSVFAYESSVHSTNVLLSLNDQRKKDVLCDVTVFVEGQRFRAHRSVLAACSSYFHSRIVGQADGELNITLPEEVTVKGFEPLIQFAYTAKLILSKENVDEVCKCVEFLSVHNIEESCFQFLKFKFLDSTADQQECPRKKCFSSHCQKTDLKLSLLDQRDLETDEVEEFLENKNVQTPQCKLRRYQGNAKASPPLQDTASQTYESMCLGKDAALALPSLCPKYRKFQKAFGTDRVRTGESSVKDIHASVQPNETSENECLGGVPECRDLQVMLKCDESKLAMEPEEMKKDPASQCPTEKSEVTPFPHNSSIDPHGLYSLSLLHTYDQYGDLNFAGMQNTAVLTEKPLSGTDVQEKTFGESQDLPLKSDLGTREDSSLASSDRSSVEREVAEHLAKGFWSDICNTDTPCQMQLSPAVAKDGSEQISQKRSECPWLGIRISESPEPGQRTFTTLSSVNCPFISTLSTEGCSSNLEIGNDDYVSEPQQEPCPYACVISLGDDSETDTEGDSESCSAREQECEVKLPFNAQRIISLSRNDFQSLLKMHKLTPEQLDCIHDIRRRSKNRIAAQRCRKRKLDCIQNLESEIEKLQNEKESLLKERDHILSTLGETKQNLTGLCQKVCKEAALSQEQIQILAKYSAADCPLSFLISEKDKSTPDGELALPSIFSLSDRPPAVLPPCARGNSESGYARGQESQQMSTATSEQAGPVEQCRQSGGISDFCQQMTDKCTTDE
SIO_010081: BACH1
subclass of: SO_0000673
so part of: BACH1
location: join(14788975..14789208,14793722..14795056,14798061..14798267,14810206..14810640)
location: region:14788975-14810640:1
so has part: feature:14788975-14789208:1:exon
so has part: feature:14793722-14795056:1:exon
so has part: feature:14798061-14798267:1:exon
so has part: feature:14810206-14810640:1:exon

XP_030661893.1
type: Protein
SIO_000068: ncbiprotein

position:14788975:1
position: 14788975
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14810640:1
position: 14810640
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14788975-14789208:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:14793722-14795056:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:14798061-14798267:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:14810206-14810640:1:exon

BACH1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61853
gene: BACH1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: transcription regulator protein BACH1
translation: MSLSENSVFAYESSVHSTNVLLSLNDQRKKDVLCDVTVFVEGQRFRAHRSVLAACSSYFHSRIVGQADGELNITLPEEVTVKGFEPLIQFAYTAKLILSKENVDEVCKCVEFLSVHNIEESCFQFLKFKFLDSTADQQECPRKKCFSSHCQKTDLKLSLLDQRDLETDEVEEFLENKNVQTPQCKLRRYQGNAKASPPLQDTASQTYESMCLGKDAALALPSLCPKYRKFQKAFGTDRVRTGESSVKDIHASVQPNETSENECLGGVPECRDLQVMLKCDESKLAMEPEEMKKDPASQCPTEKSEVTPFPHNSSIDPHGLYSLSLLHTYDQYGDLNFAGMQNTAVLTEKPLSGTDVQEKTFGESQDLPLKSDLGTREDSSLASSDRSSVEREVAEHLAKGFWSDICNTDTPCQMQLSPAVAKDGSEQISQKRSECPWLGIRISESPEPGQRTFTTLSSVNCPFISTLSTEGCSSNLEIGNDDYVSEPQQEPCPYACVISLGDDSETDTEGDSESCSAREQECEVKLPFNAQRIISLSRNDFQSLLKMHKLTPEQLDCIHDIRRRSKNRIAAQRCRKRKLDCIQNLESEIEKLQNEKESLLKERDHILSTLGETKQNLTGLCQKVCKEAALSQEQIQILAKYSAADCPLSFLISEKDKSTPDGELALPSIFSLSDRPPAVLPPCARGNSESGYARGQESQQMSTATSEQAGPVEQCRQSGGISDFCQQMTDKCTTDE
SIO_010081: BACH1
subclass of: SO_0000673
so part of: BACH1
location: join(14788975..14789208,14793722..14795056,14798061..14798267,14810206..14810640)
location: region:14788975-14810640:1
so has part: feature:14788975-14789208:1:exon
so has part: feature:14793722-14795056:1:exon
so has part: feature:14798061-14798267:1:exon
so has part: feature:14810206-14810640:1:exon

XP_003263873.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14788975-14789208:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:14793722-14795056:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:14798061-14798267:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:14810206-14810640:1:exon

LOC115833200
type: Gene
subclass of: SO_0000704
RO_0002162: 61853
gene: LOC115833200
note: Derived by automated computational analysis using gene prediction method: cmsearch.
pseudo: true
so part of: sequence
location: complement(14857195..14857280)
location: region:14857195-14857280:-1
so has part: feature:14857195-14857280:-1:exon

115833200
type: Gene
SIO_000068: ncbigene

position:14857195:-1
position: 14857195
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14857280:-1
position: 14857280
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14857195-14857280:-1:exon

LOC115833200
type: Exon
subclass of: SO_0000147
RO_0002162: 61853
gene: LOC115833200
inference: COORDINATES: nucleotide motif:Rfam:12.0:RF01210
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
pseudo: true
SIO_010081: LOC115833200
subclass of: SO_0000673
so part of: LOC115833200
location: complement(14857195..14857280)
location: region:14857195-14857280:-1
so has part: feature:14857195-14857280:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:14857195-14857280:-1:exon

GRIK1
type: Gene
subclass of: SO_0000704
RO_0002162: 61853
gene: GRIK1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(15001439..15431431)
location: region:15001439-15431431:-1
so has part: feature:15001439-15431431:-1:exon
subclass of: SO_0000010

100596174
type: Gene
SIO_000068: ncbigene

position:15001439:-1
position: 15001439
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15431431:-1
position: 15431431
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15001439-15431431:-1:exon

GRIK1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 61853
gene: GRIK1
product: glutamate ionotropic receptor kainate type subunit 1, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 48 ESTs, 14 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XM_030806035.1
SIO_010081: GRIK1
subclass of: SO_0000673
so part of: GRIK1
location: complement(join(15001439..15001891,15019498..15019748,15025826..15026051,15047746..15047963,15051988..15052106,15057888..15058111,15059386..15059589,15061654..15061767,15069370..15069477,15114433..15114576,15123219..15123392,15127261..15127314,15145771..15145952,15162594..15162851,15166744..15166911,15430769..15431431))
location: region:15001439-15431431:-1
so has part: feature:15430769-15431431:-1:exon
so has part: feature:15166744-15166911:-1:exon
so has part: feature:15162594-15162851:-1:exon
so has part: feature:15145771-15145952:-1:exon
so has part: feature:15127261-15127314:-1:exon
so has part: feature:15123219-15123392:-1:exon
so has part: feature:15114433-15114576:-1:exon
so has part: feature:15069370-15069477:-1:exon
so has part: feature:15061654-15061767:-1:exon
so has part: feature:15059386-15059589:-1:exon
so has part: feature:15057888-15058111:-1:exon
so has part: feature:15051988-15052106:-1:exon
so has part: feature:15047746-15047963:-1:exon
so has part: feature:15025826-15026051:-1:exon
so has part: feature:15019498-15019748:-1:exon
so has part: feature:15001439-15001891:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:15430769-15431431:-1:exon

position:15430769:-1
position: 15430769
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:15166744-15166911:-1:exon

position:15166744:-1
position: 15166744
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15166911:-1
position: 15166911
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:15162594-15162851:-1:exon

position:15162594:-1
position: 15162594
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15162851:-1
position: 15162851
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:15145771-15145952:-1:exon

position:15145771:-1
position: 15145771
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15145952:-1
position: 15145952
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:15127261-15127314:-1:exon

position:15127261:-1
position: 15127261
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15127314:-1
position: 15127314
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:15123219-15123392:-1:exon

position:15123219:-1
position: 15123219
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15123392:-1
position: 15123392
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:15114433-15114576:-1:exon

position:15114433:-1
position: 15114433
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15114576:-1
position: 15114576
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:15069370-15069477:-1:exon

position:15069370:-1
position: 15069370
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15069477:-1
position: 15069477
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:15061654-15061767:-1:exon

position:15061654:-1
position: 15061654
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15061767:-1
position: 15061767
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:15059386-15059589:-1:exon

position:15059386:-1
position: 15059386
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15059589:-1
position: 15059589
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:15057888-15058111:-1:exon

position:15057888:-1
position: 15057888
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15058111:-1
position: 15058111
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:15051988-15052106:-1:exon

position:15051988:-1
position: 15051988
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15052106:-1
position: 15052106
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:15047746-15047963:-1:exon

position:15047746:-1
position: 15047746
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15047963:-1
position: 15047963
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:15025826-15026051:-1:exon

position:15025826:-1
position: 15025826
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15026051:-1
position: 15026051
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:15019498-15019748:-1:exon

position:15019498:-1
position: 15019498
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15019748:-1
position: 15019748
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:15001439-15001891:-1:exon

position:15001891:-1
position: 15001891
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

GRIK1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 61853
gene: GRIK1
product: glutamate ionotropic receptor kainate type subunit 1, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 44 ESTs, 11 Proteins, and 97% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_030806037.1
SIO_010081: GRIK1
subclass of: SO_0000673
so part of: GRIK1
location: complement(join(15001439..15001891,15002304..15002390,15019498..15019748,15025826..15026051,15047746..15047963,15051988..15052106,15057888..15058111,15059386..15059589,15061654..15061767,15069370..15069477,15114433..15114576,15123219..15123392,15127261..15127314,15145771..15145952,15162594..15162851,15166744..15166911,15430769..15431431))
location: region:15001439-15431431:-1
so has part: feature:15430769-15431431:-1:exon
so has part: feature:15166744-15166911:-1:exon
so has part: feature:15162594-15162851:-1:exon
so has part: feature:15145771-15145952:-1:exon
so has part: feature:15127261-15127314:-1:exon
so has part: feature:15123219-15123392:-1:exon
so has part: feature:15114433-15114576:-1:exon
so has part: feature:15069370-15069477:-1:exon
so has part: feature:15061654-15061767:-1:exon
so has part: feature:15059386-15059589:-1:exon
so has part: feature:15057888-15058111:-1:exon
so has part: feature:15051988-15052106:-1:exon
so has part: feature:15047746-15047963:-1:exon
so has part: feature:15025826-15026051:-1:exon
so has part: feature:15019498-15019748:-1:exon
so has part: feature:15002304-15002390:-1:exon
so has part: feature:15001439-15001891:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:15430769-15431431:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:15166744-15166911:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:15162594-15162851:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:15145771-15145952:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:15127261-15127314:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:15123219-15123392:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:15114433-15114576:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:15069370-15069477:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:15061654-15061767:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:15059386-15059589:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:15057888-15058111:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:15051988-15052106:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:15047746-15047963:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:15025826-15026051:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:15019498-15019748:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:15002304-15002390:-1:exon

position:15002304:-1
position: 15002304
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15002390:-1
position: 15002390
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:15001439-15001891:-1:exon

GRIK1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 61853
gene: GRIK1
product: glutamate ionotropic receptor kainate type subunit 1, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 48 ESTs, 5 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XM_030806034.1
SIO_010081: GRIK1
subclass of: SO_0000673
so part of: GRIK1
location: complement(join(15001439..15001891,15019498..15019748,15025826..15026051,15047746..15047963,15051988..15052106,15057888..15058111,15059386..15059589,15061654..15061767,15067056..15067100,15069370..15069477,15114433..15114576,15123219..15123392,15127261..15127314,15145771..15145952,15162594..15162851,15166744..15166911,15430769..15431431))
location: region:15001439-15431431:-1
so has part: feature:15430769-15431431:-1:exon
so has part: feature:15166744-15166911:-1:exon
so has part: feature:15162594-15162851:-1:exon
so has part: feature:15145771-15145952:-1:exon
so has part: feature:15127261-15127314:-1:exon
so has part: feature:15123219-15123392:-1:exon
so has part: feature:15114433-15114576:-1:exon
so has part: feature:15069370-15069477:-1:exon
so has part: feature:15067056-15067100:-1:exon
so has part: feature:15061654-15061767:-1:exon
so has part: feature:15059386-15059589:-1:exon
so has part: feature:15057888-15058111:-1:exon
so has part: feature:15051988-15052106:-1:exon
so has part: feature:15047746-15047963:-1:exon
so has part: feature:15025826-15026051:-1:exon
so has part: feature:15019498-15019748:-1:exon
so has part: feature:15001439-15001891:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:15430769-15431431:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:15166744-15166911:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:15162594-15162851:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:15145771-15145952:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:15127261-15127314:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:15123219-15123392:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:15114433-15114576:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:15069370-15069477:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:15067056-15067100:-1:exon

position:15067056:-1
position: 15067056
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15067100:-1
position: 15067100
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:15061654-15061767:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:15059386-15059589:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:15057888-15058111:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:15051988-15052106:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:15047746-15047963:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:15025826-15026051:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:15019498-15019748:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:15001439-15001891:-1:exon

GRIK1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 61853
gene: GRIK1
product: glutamate ionotropic receptor kainate type subunit 1, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 44 ESTs, 3 Proteins, and 97% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_030806036.1
SIO_010081: GRIK1
subclass of: SO_0000673
so part of: GRIK1
location: complement(join(15001439..15001891,15002304..15002390,15019498..15019748,15025826..15026051,15047746..15047963,15051988..15052106,15057888..15058111,15059386..15059589,15061654..15061767,15067056..15067100,15069370..15069477,15114433..15114576,15123219..15123392,15127261..15127314,15145771..15145952,15162594..15162851,15166744..15166911,15430769..15431431))
location: region:15001439-15431431:-1
so has part: feature:15430769-15431431:-1:exon
so has part: feature:15166744-15166911:-1:exon
so has part: feature:15162594-15162851:-1:exon
so has part: feature:15145771-15145952:-1:exon
so has part: feature:15127261-15127314:-1:exon
so has part: feature:15123219-15123392:-1:exon
so has part: feature:15114433-15114576:-1:exon
so has part: feature:15069370-15069477:-1:exon
so has part: feature:15067056-15067100:-1:exon
so has part: feature:15061654-15061767:-1:exon
so has part: feature:15059386-15059589:-1:exon
so has part: feature:15057888-15058111:-1:exon
so has part: feature:15051988-15052106:-1:exon
so has part: feature:15047746-15047963:-1:exon
so has part: feature:15025826-15026051:-1:exon
so has part: feature:15019498-15019748:-1:exon
so has part: feature:15002304-15002390:-1:exon
so has part: feature:15001439-15001891:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:15430769-15431431:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:15166744-15166911:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:15162594-15162851:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:15145771-15145952:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:15127261-15127314:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:15123219-15123392:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:15114433-15114576:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:15069370-15069477:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:15067056-15067100:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:15061654-15061767:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:15059386-15059589:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:15057888-15058111:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:15051988-15052106:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:15047746-15047963:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:15025826-15026051:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:15019498-15019748:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:15002304-15002390:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:15001439-15001891:-1:exon

GRIK1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61853
gene: GRIK1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: glutamate receptor ionotropic, kainate 1 isoform X2
translation: MEHGTLLSQPGLWTRDTSWALLYFLCYILPQTAPQVLRIGGIFETVENEPVNVEELAFKFAVTSINRNRTLMPNTTLTYDIQRINLFDSFEASRRACDQLALGVAALFGPSHSSSISAVQSICNALEVPHIQTRWKHPSVDNKDLFYINLYPDYAAISRAILDLVLYYNWKTVTVVYEDSTGLIRLQELIKAPSRYNIKIKIRQLPSGNKDAKPLLKEMKKGKEFYVIFDCSHETAAEILKQILFMGMMTEYYHYFFTTLDLFALDLELYRYSGVNMTGFRLLNIDNPHVSSIIEKWSMERLQAPPRPETGLLDGMMTTEAALMYDAVYMVAIASHRASQLTVSSLQCHRHKPWRLGPRFMNLIKEARWDGLTGHITFNKTNGLRKDFDLDIISLKEEGTEKIGIWNSNSGLNMTDSNKDKSSNITDSLANRTLVVTTILEEPYVMYRKSDKPLYGNDRFEGYCLDLLKELSNILGFIYDVKLVPDGKYGAQNDKGEWNGMVKELIDHRADLAVAPLTITYVREKVIDFSKPFMTLGISILYRKPNGTNPGVFSFLNPLSPDIWMYVLLACLGVSCVLFVIARFTPYEWYNPHPCNPDSDVVENNFTLLNSFWFGVGALMQQGSELMPKALSTRIVGGIWWFFTLIIISSYTANLAAFLTVERMESPIDSADDLAKQTKIEYGAVRDGSTMTFFKKSKISTYEKMWAFMSSRQQTALVRNSDEGIQRVLTTDYALLMESTSIEYVTQRNCNLTQIGGLIDSKGYGVGTPIGSPYRDKITIAILQLQEEGKLHMMKEKWWRGNGCPEEDNKEASALGVENIGGIFIVLAAGLVLSVFVAIGEFVYKSRKNNDIEQCLSFNAIMEELGISLKNQKKIKKKSRTKGKSSFTSILTCHQRRTQRKETVA
SIO_010081: GRIK1
subclass of: SO_0000673
so part of: GRIK1
location: complement(join(15001736..15001891,15019498..15019748,15025826..15026051,15047746..15047963,15051988..15052106,15057888..15058111,15059386..15059589,15061654..15061767,15069370..15069477,15114433..15114576,15123219..15123392,15127261..15127314,15145771..15145952,15162594..15162851,15166744..15166911,15430769..15430886))
location: region:15001736-15430886:-1
so has part: feature:15430769-15430886:-1:exon
so has part: feature:15166744-15166911:-1:exon
so has part: feature:15162594-15162851:-1:exon
so has part: feature:15145771-15145952:-1:exon
so has part: feature:15127261-15127314:-1:exon
so has part: feature:15123219-15123392:-1:exon
so has part: feature:15114433-15114576:-1:exon
so has part: feature:15069370-15069477:-1:exon
so has part: feature:15061654-15061767:-1:exon
so has part: feature:15059386-15059589:-1:exon
so has part: feature:15057888-15058111:-1:exon
so has part: feature:15051988-15052106:-1:exon
so has part: feature:15047746-15047963:-1:exon
so has part: feature:15025826-15026051:-1:exon
so has part: feature:15019498-15019748:-1:exon
so has part: feature:15001736-15001891:-1:exon

XP_030661895.1
type: Protein
SIO_000068: ncbiprotein

position:15001736:-1
position: 15001736
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15430886:-1
position: 15430886
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15430769-15430886:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:15166744-15166911:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:15162594-15162851:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:15145771-15145952:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:15127261-15127314:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:15123219-15123392:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:15114433-15114576:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:15069370-15069477:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:15061654-15061767:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:15059386-15059589:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:15057888-15058111:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:15051988-15052106:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:15047746-15047963:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:15025826-15026051:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:15019498-15019748:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:15001736-15001891:-1:exon

GRIK1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61853
gene: GRIK1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: glutamate receptor ionotropic, kainate 1 isoform X4
translation: MEHGTLLSQPGLWTRDTSWALLYFLCYILPQTAPQVLRIGGIFETVENEPVNVEELAFKFAVTSINRNRTLMPNTTLTYDIQRINLFDSFEASRRACDQLALGVAALFGPSHSSSISAVQSICNALEVPHIQTRWKHPSVDNKDLFYINLYPDYAAISRAILDLVLYYNWKTVTVVYEDSTGLIRLQELIKAPSRYNIKIKIRQLPSGNKDAKPLLKEMKKGKEFYVIFDCSHETAAEILKQILFMGMMTEYYHYFFTTLDLFALDLELYRYSGVNMTGFRLLNIDNPHVSSIIEKWSMERLQAPPRPETGLLDGMMTTEAALMYDAVYMVAIASHRASQLTVSSLQCHRHKPWRLGPRFMNLIKEARWDGLTGHITFNKTNGLRKDFDLDIISLKEEGTEKIGIWNSNSGLNMTDSNKDKSSNITDSLANRTLVVTTILEEPYVMYRKSDKPLYGNDRFEGYCLDLLKELSNILGFIYDVKLVPDGKYGAQNDKGEWNGMVKELIDHRADLAVAPLTITYVREKVIDFSKPFMTLGISILYRKPNGTNPGVFSFLNPLSPDIWMYVLLACLGVSCVLFVIARFTPYEWYNPHPCNPDSDVVENNFTLLNSFWFGVGALMQQGSELMPKALSTRIVGGIWWFFTLIIISSYTANLAAFLTVERMESPIDSADDLAKQTKIEYGAVRDGSTMTFFKKSKISTYEKMWAFMSSRQQTALVRNSDEGIQRVLTTDYALLMESTSIEYVTQRNCNLTQIGGLIDSKGYGVGTPIGSPYRDKITIAILQLQEEGKLHMMKEKWWRGNGCPEEDNKEASALGVENIGGIFIVLAAGLVLSVFVAIGEFVYKSRKNNDIEQKGKSSRIRFYFRNKVRFHGRKKQSLGVEKCLSFNAIMEELGISLKNQKKIKKKSRTKGKSSFTSILTCHQRRTQRKETVA
SIO_010081: GRIK1
subclass of: SO_0000673
so part of: GRIK1
location: complement(join(15001736..15001891,15002304..15002390,15019498..15019748,15025826..15026051,15047746..15047963,15051988..15052106,15057888..15058111,15059386..15059589,15061654..15061767,15069370..15069477,15114433..15114576,15123219..15123392,15127261..15127314,15145771..15145952,15162594..15162851,15166744..15166911,15430769..15430886))
location: region:15001736-15430886:-1
so has part: feature:15430769-15430886:-1:exon
so has part: feature:15166744-15166911:-1:exon
so has part: feature:15162594-15162851:-1:exon
so has part: feature:15145771-15145952:-1:exon
so has part: feature:15127261-15127314:-1:exon
so has part: feature:15123219-15123392:-1:exon
so has part: feature:15114433-15114576:-1:exon
so has part: feature:15069370-15069477:-1:exon
so has part: feature:15061654-15061767:-1:exon
so has part: feature:15059386-15059589:-1:exon
so has part: feature:15057888-15058111:-1:exon
so has part: feature:15051988-15052106:-1:exon
so has part: feature:15047746-15047963:-1:exon
so has part: feature:15025826-15026051:-1:exon
so has part: feature:15019498-15019748:-1:exon
so has part: feature:15002304-15002390:-1:exon
so has part: feature:15001736-15001891:-1:exon

XP_030661897.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15430769-15430886:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:15166744-15166911:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:15162594-15162851:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:15145771-15145952:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:15127261-15127314:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:15123219-15123392:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:15114433-15114576:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:15069370-15069477:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:15061654-15061767:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:15059386-15059589:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:15057888-15058111:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:15051988-15052106:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:15047746-15047963:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:15025826-15026051:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:15019498-15019748:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:15002304-15002390:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:15001736-15001891:-1:exon

GRIK1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61853
gene: GRIK1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: glutamate receptor ionotropic, kainate 1 isoform X1
translation: MEHGTLLSQPGLWTRDTSWALLYFLCYILPQTAPQVLRIGGIFETVENEPVNVEELAFKFAVTSINRNRTLMPNTTLTYDIQRINLFDSFEASRRACDQLALGVAALFGPSHSSSISAVQSICNALEVPHIQTRWKHPSVDNKDLFYINLYPDYAAISRAILDLVLYYNWKTVTVVYEDSTGLIRLQELIKAPSRYNIKIKIRQLPSGNKDAKPLLKEMKKGKEFYVIFDCSHETAAEILKQILFMGMMTEYYHYFFTTLDLFALDLELYRYSGVNMTGFRLLNIDNPHVSSIIEKWSMERLQAPPRPETGLLDGMMTTEAALMYDAVYMVAIASHRASQLTVSSLQCHRHKPWRLGPRFMNLIKEARWDGLTGHITFNKTNGLRKDFDLDIISLKEEGTEKAAGEVSKHLYKVWKKIGIWNSNSGLNMTDSNKDKSSNITDSLANRTLVVTTILEEPYVMYRKSDKPLYGNDRFEGYCLDLLKELSNILGFIYDVKLVPDGKYGAQNDKGEWNGMVKELIDHRADLAVAPLTITYVREKVIDFSKPFMTLGISILYRKPNGTNPGVFSFLNPLSPDIWMYVLLACLGVSCVLFVIARFTPYEWYNPHPCNPDSDVVENNFTLLNSFWFGVGALMQQGSELMPKALSTRIVGGIWWFFTLIIISSYTANLAAFLTVERMESPIDSADDLAKQTKIEYGAVRDGSTMTFFKKSKISTYEKMWAFMSSRQQTALVRNSDEGIQRVLTTDYALLMESTSIEYVTQRNCNLTQIGGLIDSKGYGVGTPIGSPYRDKITIAILQLQEEGKLHMMKEKWWRGNGCPEEDNKEASALGVENIGGIFIVLAAGLVLSVFVAIGEFVYKSRKNNDIEQCLSFNAIMEELGISLKNQKKIKKKSRTKGKSSFTSILTCHQRRTQRKETVA
SIO_010081: GRIK1
subclass of: SO_0000673
so part of: GRIK1
location: complement(join(15001736..15001891,15019498..15019748,15025826..15026051,15047746..15047963,15051988..15052106,15057888..15058111,15059386..15059589,15061654..15061767,15067056..15067100,15069370..15069477,15114433..15114576,15123219..15123392,15127261..15127314,15145771..15145952,15162594..15162851,15166744..15166911,15430769..15430886))
location: region:15001736-15430886:-1
so has part: feature:15430769-15430886:-1:exon
so has part: feature:15166744-15166911:-1:exon
so has part: feature:15162594-15162851:-1:exon
so has part: feature:15145771-15145952:-1:exon
so has part: feature:15127261-15127314:-1:exon
so has part: feature:15123219-15123392:-1:exon
so has part: feature:15114433-15114576:-1:exon
so has part: feature:15069370-15069477:-1:exon
so has part: feature:15067056-15067100:-1:exon
so has part: feature:15061654-15061767:-1:exon
so has part: feature:15059386-15059589:-1:exon
so has part: feature:15057888-15058111:-1:exon
so has part: feature:15051988-15052106:-1:exon
so has part: feature:15047746-15047963:-1:exon
so has part: feature:15025826-15026051:-1:exon
so has part: feature:15019498-15019748:-1:exon
so has part: feature:15001736-15001891:-1:exon

XP_030661894.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15430769-15430886:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:15166744-15166911:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:15162594-15162851:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:15145771-15145952:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:15127261-15127314:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:15123219-15123392:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:15114433-15114576:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:15069370-15069477:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:15067056-15067100:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:15061654-15061767:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:15059386-15059589:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:15057888-15058111:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:15051988-15052106:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:15047746-15047963:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:15025826-15026051:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:15019498-15019748:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:15001736-15001891:-1:exon

GRIK1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61853
gene: GRIK1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: glutamate receptor ionotropic, kainate 1 isoform X3
translation: MEHGTLLSQPGLWTRDTSWALLYFLCYILPQTAPQVLRIGGIFETVENEPVNVEELAFKFAVTSINRNRTLMPNTTLTYDIQRINLFDSFEASRRACDQLALGVAALFGPSHSSSISAVQSICNALEVPHIQTRWKHPSVDNKDLFYINLYPDYAAISRAILDLVLYYNWKTVTVVYEDSTGLIRLQELIKAPSRYNIKIKIRQLPSGNKDAKPLLKEMKKGKEFYVIFDCSHETAAEILKQILFMGMMTEYYHYFFTTLDLFALDLELYRYSGVNMTGFRLLNIDNPHVSSIIEKWSMERLQAPPRPETGLLDGMMTTEAALMYDAVYMVAIASHRASQLTVSSLQCHRHKPWRLGPRFMNLIKEARWDGLTGHITFNKTNGLRKDFDLDIISLKEEGTEKAAGEVSKHLYKVWKKIGIWNSNSGLNMTDSNKDKSSNITDSLANRTLVVTTILEEPYVMYRKSDKPLYGNDRFEGYCLDLLKELSNILGFIYDVKLVPDGKYGAQNDKGEWNGMVKELIDHRADLAVAPLTITYVREKVIDFSKPFMTLGISILYRKPNGTNPGVFSFLNPLSPDIWMYVLLACLGVSCVLFVIARFTPYEWYNPHPCNPDSDVVENNFTLLNSFWFGVGALMQQGSELMPKALSTRIVGGIWWFFTLIIISSYTANLAAFLTVERMESPIDSADDLAKQTKIEYGAVRDGSTMTFFKKSKISTYEKMWAFMSSRQQTALVRNSDEGIQRVLTTDYALLMESTSIEYVTQRNCNLTQIGGLIDSKGYGVGTPIGSPYRDKITIAILQLQEEGKLHMMKEKWWRGNGCPEEDNKEASALGVENIGGIFIVLAAGLVLSVFVAIGEFVYKSRKNNDIEQKGKSSRIRFYFRNKVRFHGRKKQSLGVEKCLSFNAIMEELGISLKNQKKIKKKSRTKGKSSFTSILTCHQRRTQRKETVA
SIO_010081: GRIK1
subclass of: SO_0000673
so part of: GRIK1
location: complement(join(15001736..15001891,15002304..15002390,15019498..15019748,15025826..15026051,15047746..15047963,15051988..15052106,15057888..15058111,15059386..15059589,15061654..15061767,15067056..15067100,15069370..15069477,15114433..15114576,15123219..15123392,15127261..15127314,15145771..15145952,15162594..15162851,15166744..15166911,15430769..15430886))
location: region:15001736-15430886:-1
so has part: feature:15430769-15430886:-1:exon
so has part: feature:15166744-15166911:-1:exon
so has part: feature:15162594-15162851:-1:exon
so has part: feature:15145771-15145952:-1:exon
so has part: feature:15127261-15127314:-1:exon
so has part: feature:15123219-15123392:-1:exon
so has part: feature:15114433-15114576:-1:exon
so has part: feature:15069370-15069477:-1:exon
so has part: feature:15067056-15067100:-1:exon
so has part: feature:15061654-15061767:-1:exon
so has part: feature:15059386-15059589:-1:exon
so has part: feature:15057888-15058111:-1:exon
so has part: feature:15051988-15052106:-1:exon
so has part: feature:15047746-15047963:-1:exon
so has part: feature:15025826-15026051:-1:exon
so has part: feature:15019498-15019748:-1:exon
so has part: feature:15002304-15002390:-1:exon
so has part: feature:15001736-15001891:-1:exon

XP_030661896.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15430769-15430886:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:15166744-15166911:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:15162594-15162851:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:15145771-15145952:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:15127261-15127314:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:15123219-15123392:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:15114433-15114576:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:15069370-15069477:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:15067056-15067100:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:15061654-15061767:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:15059386-15059589:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:15057888-15058111:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:15051988-15052106:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:15047746-15047963:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:15025826-15026051:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:15019498-15019748:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:15002304-15002390:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:15001736-15001891:-1:exon

LOC115833133
type: Gene
subclass of: SO_0000704
RO_0002162: 61853
gene: LOC115833133
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 15066436..15101829
location: region:15066436-15101829:1
so has part: feature:15066436-15101829:1:exon
subclass of: SO_0000011

115833133
type: Gene
SIO_000068: ncbigene

position:15066436:1
position: 15066436
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15101829:1
position: 15101829
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15066436-15101829:1:exon

LOC115833133
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 61853
nc RNA class: lncRNA
gene: LOC115833133
product: uncharacterized LOC115833133
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, and 75% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XR_004028574.1
SIO_010081: LOC115833133
subclass of: SO_0000673
so part of: LOC115833133
location: join(15066436..15067308,15068110..15068234,15101620..15101829)
location: region:15066436-15101829:1
so has part: feature:15066436-15067308:1:exon
so has part: feature:15068110-15068234:1:exon
so has part: feature:15101620-15101829:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:15066436-15067308:1:exon

position:15067308:1
position: 15067308
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:15068110-15068234:1:exon

position:15068110:1
position: 15068110
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15068234:1
position: 15068234
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:15101620-15101829:1:exon

position:15101620:1
position: 15101620
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

CLDN17
type: Gene
subclass of: SO_0000704
RO_0002162: 61853
gene: CLDN17
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(15643580..15644805)
location: region:15643580-15644805:-1
so has part: feature:15643580-15644805:-1:exon
subclass of: SO_0000010

100597196
type: Gene
SIO_000068: ncbigene

position:15643580:-1
position: 15643580
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15644805:-1
position: 15644805
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15643580-15644805:-1:exon

CLDN17
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 61853
gene: CLDN17
product: claudin 17
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 2 Proteins
transcript id: XM_004092297.3
SIO_010081: CLDN17
subclass of: SO_0000673
so part of: CLDN17
location: complement(15643580..15644805)
location: region:15643580-15644805:-1
so has part: feature:15643580-15644805:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:15643580-15644805:-1:exon

CLDN17
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61853
gene: CLDN17
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: claudin-17
translation: MAFYPLQIAGLVLGFLGMVGTLATTLLPQWRVSAFVGSNIIVFERLWEGLWMNCIRQARVRLQCKFYSSLLALPPALETARALMCVAVALSLIALLLGICGMKQVQCTGSNERAKAYLLGTSGVLFILTGIFVLIPVSWTASIIIRDFYNPAIHIGQKRELGAALFLGWASAAVLFIGGGLLCGFCCCNRKKQGYGYPVPGYCVPHTDKRRNRTMLSKTSTSYV
SIO_010081: CLDN17
subclass of: SO_0000673
so part of: CLDN17
location: complement(15643949..15644623)
location: region:15643949-15644623:-1
so has part: feature:15643949-15644623:-1:exon

XP_004092345.2
type: Protein
SIO_000068: ncbiprotein

position:15643949:-1
position: 15643949
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15644623:-1
position: 15644623
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15643949-15644623:-1:exon

LOC105738729
type: Gene
subclass of: SO_0000704
RO_0002162: 61853
gene: LOC105738729
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(15685241..15687680)
location: region:15685241-15687680:-1
so has part: feature:15685241-15687680:-1:exon
subclass of: SO_0000011

105738729
type: Gene
SIO_000068: ncbigene

position:15685241:-1
position: 15685241
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15687680:-1
position: 15687680
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15685241-15687680:-1:exon

LOC105738729
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 61853
nc RNA class: lncRNA
gene: LOC105738729
product: uncharacterized LOC105738729
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 1 EST
transcript id: XR_001114579.1
SIO_010081: LOC105738729
subclass of: SO_0000673
so part of: LOC105738729
location: complement(join(15685241..15685423,15685820..15686007,15687631..15687680))
location: region:15685241-15687680:-1
so has part: feature:15687631-15687680:-1:exon
so has part: feature:15685820-15686007:-1:exon
so has part: feature:15685241-15685423:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:15687631-15687680:-1:exon

position:15687631:-1
position: 15687631
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:15685820-15686007:-1:exon

position:15685820:-1
position: 15685820
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15686007:-1
position: 15686007
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:15685241-15685423:-1:exon

position:15685423:-1
position: 15685423
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

CLDN8
type: Gene
subclass of: SO_0000704
RO_0002162: 61853
gene: CLDN8
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(15689900..15692046)
location: region:15689900-15692046:-1
so has part: feature:15689900-15692046:-1:exon
subclass of: SO_0000010

100597536
type: Gene
SIO_000068: ncbigene

position:15689900:-1
position: 15689900
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15692046:-1
position: 15692046
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15689900-15692046:-1:exon

CLDN8
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 61853
gene: CLDN8
product: claudin 8
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 33 ESTs, 4 Proteins
transcript id: XM_030806195.1
SIO_010081: CLDN8
subclass of: SO_0000673
so part of: CLDN8
location: complement(join(15689900..15690321,15690678..15692046))
location: region:15689900-15692046:-1
so has part: feature:15690678-15692046:-1:exon
so has part: feature:15689900-15690321:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:15690678-15692046:-1:exon

position:15690678:-1
position: 15690678
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:15689900-15690321:-1:exon

position:15690321:-1
position: 15690321
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

CLDN8
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61853
gene: CLDN8
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: claudin-8
translation: MAIHALEIAGLFLGGVGMVGTVAVTVMPQWRVSAFIENNIVVFENFWEGLWMNCVRQANIRMQCKIYDSLLALSPDLQAARGLMCAASVMSFLAFMMAILGMKCTRCTGDNEKVKAHILLTAGIIFVITGMVVLIPVSWVANAIIRDFYNPIVNVAQKRELGEALYLGWTTALVLIVGGALFCCVFCCNEKSSSYRYSIPSHRTTQKSYHMEKKSPSVYSRSQYV
SIO_010081: CLDN8
subclass of: SO_0000673
so part of: CLDN8
location: complement(15691149..15691826)
location: region:15691149-15691826:-1
so has part: feature:15691149-15691826:-1:exon

XP_030662055.1
type: Protein
SIO_000068: ncbiprotein

position:15691149:-1
position: 15691149
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15691826:-1
position: 15691826
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15691149-15691826:-1:exon

LOC100597882
type: Gene
subclass of: SO_0000704
RO_0002162: 61853
gene: LOC100597882
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(15745114..15746756)
location: region:15745114-15746756:-1
so has part: feature:15745114-15746756:-1:exon
subclass of: SO_0000010

100597882
type: Gene
SIO_000068: ncbigene

position:15745114:-1
position: 15745114
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15746756:-1
position: 15746756
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15745114-15746756:-1:exon

LOC100597882
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 61853
gene: LOC100597882
product: keratin-associated protein 24-1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 2 Proteins
transcript id: XM_003263833.2
SIO_010081: LOC100597882
subclass of: SO_0000673
so part of: LOC100597882
location: complement(15745114..15746756)
location: region:15745114-15746756:-1
so has part: feature:15745114-15746756:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:15745114-15746756:-1:exon

LOC100597882
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61853
gene: LOC100597882
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: keratin-associated protein 24-1
translation: MHAGSMSTLGYPGVCSTTSYRTHCYIPVTSSVTLSSNDLSPTFGHCLPSSYQGNLWLLDYCQESYGKAPTCESASCEPKTCSTTGCDPSNSSVPCDSPSAGQVFSVCETTNISPSPSCSPCTQTNGYVCNRHIPTRNASKACQTLRISSNCFGQLNCLSKSFQTLNHCRLSTLGYKSYQNPCFIPSYVSPLCYISNSCQPQSYLMRNYHYSSYGPMSCRPLSYLSGSFRSLSCIPSTFPPLRYLCSGSRPLKYY
SIO_010081: LOC100597882
subclass of: SO_0000673
so part of: LOC100597882
location: complement(15745974..15746738)
location: region:15745974-15746738:-1
so has part: feature:15745974-15746738:-1:exon

XP_003263881.1
type: Protein
SIO_000068: ncbiprotein

position:15745974:-1
position: 15745974
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15746738:-1
position: 15746738
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15745974-15746738:-1:exon

LOC100598226
type: Gene
subclass of: SO_0000704
RO_0002162: 61853
gene: LOC100598226
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(15752986..15753342)
location: region:15752986-15753342:-1
so has part: feature:15752986-15753342:-1:exon
subclass of: SO_0000010

100598226
type: Gene
SIO_000068: ncbigene

position:15752986:-1
position: 15752986
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15753342:-1
position: 15753342
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15752986-15753342:-1:exon

LOC100598226
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 61853
gene: LOC100598226
product: keratin-associated protein 25-1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 2 Proteins
transcript id: XM_003263834.4
SIO_010081: LOC100598226
subclass of: SO_0000673
so part of: LOC100598226
location: complement(15752986..15753342)
location: region:15752986-15753342:-1
so has part: feature:15752986-15753342:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:15752986-15753342:-1:exon

LOC100598226
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61853
gene: LOC100598226
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: keratin-associated protein 25-1
translation: MHNRSQGYFFSSCHPQNHHSYGCQSLSFIFCRCQPLNFVSRTCYPLSYFSCGNQPTDSISDSFRSPNYVSHSFQPVSFMYSSFQPACSDFVGWQSPFLRRTC
SIO_010081: LOC100598226
subclass of: SO_0000673
so part of: LOC100598226
location: complement(15753016..15753324)
location: region:15753016-15753324:-1
so has part: feature:15753016-15753324:-1:exon

XP_003263882.2
type: Protein
SIO_000068: ncbiprotein

position:15753016:-1
position: 15753016
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15753324:-1
position: 15753324
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15753016-15753324:-1:exon

LOC100598567
type: Gene
subclass of: SO_0000704
RO_0002162: 61853
gene: LOC100598567
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(15789812..15790751)
location: region:15789812-15790751:-1
so has part: feature:15789812-15790751:-1:exon
subclass of: SO_0000010

100598567
type: Gene
SIO_000068: ncbigene

position:15789812:-1
position: 15789812
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15790751:-1
position: 15790751
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15789812-15790751:-1:exon

LOC100598567
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 61853
gene: LOC100598567
product: keratin-associated protein 26-1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 2 Proteins, and 43% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_012501793.2
SIO_010081: LOC100598567
subclass of: SO_0000673
so part of: LOC100598567
location: complement(15789812..15790751)
location: region:15789812-15790751:-1
so has part: feature:15789812-15790751:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:15789812-15790751:-1:exon

LOC100598567
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61853
gene: LOC100598567
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: keratin-associated protein 26-1
translation: MSCPNYCSGNSSSGSLRTSCHIPLTSIALCPTSVSCGDVLYLPTSSQDHTWVTDNCQETCGEPTSCQPAHCETSNLETSCGSSAAYYVPRPCQGSSFLPASFFSSSCLPVSCRPQSYVSSSCRPLRPLLSSYQPIGGCVPNGYRPQFCLSNSCQPQNLLTSGCRPSSCLAYRPQSLHVVSSSLRPLGPLFSGCQPLTHVFNTCRPSCSGL
SIO_010081: LOC100598567
subclass of: SO_0000673
so part of: LOC100598567
location: complement(15790088..15790720)
location: region:15790088-15790720:-1
so has part: feature:15790088-15790720:-1:exon

XP_012357247.2
type: Protein
SIO_000068: ncbiprotein

position:15790088:-1
position: 15790088
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15790720:-1
position: 15790720
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15790088-15790720:-1:exon

LOC100598898
type: Gene
subclass of: SO_0000704
RO_0002162: 61853
gene: LOC100598898
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(15793013..15794190)
location: region:15793013-15794190:-1
so has part: feature:15793013-15794190:-1:exon
subclass of: SO_0000010

100598898
type: Gene
SIO_000068: ncbigene

position:15793013:-1
position: 15793013
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15794190:-1
position: 15794190
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15793013-15794190:-1:exon

LOC100598898
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 61853
gene: LOC100598898
product: keratin-associated protein 26-1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 2 Proteins, and 50% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_003263835.4
SIO_010081: LOC100598898
subclass of: SO_0000673
so part of: LOC100598898
location: complement(15793013..15794190)
location: region:15793013-15794190:-1
so has part: feature:15793013-15794190:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:15793013-15794190:-1:exon

LOC100598898
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61853
gene: LOC100598898
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: keratin-associated protein 26-1
translation: MSCPNYCSGNSSSGSLRTSCHIPLTSIALCPTSVSCGDVLYLPTSSQDHTWVTDNCQETCGEPTSCQPAHCETSNLETSCGSSTAYYVPGPCRGSSFLPASFFSSSCLPVSCRPQSYVSSSCRPLRPLLSSYQPIGGCVPNGYRPQFCLSNSCQPQNLLTSGCRPSSCLAYRPQSLHVVSSSLRPLGPLFSGCQPLTHVFNTCRPSCSGL
SIO_010081: LOC100598898
subclass of: SO_0000673
so part of: LOC100598898
location: complement(15793284..15793916)
location: region:15793284-15793916:-1
so has part: feature:15793284-15793916:-1:exon

XP_003263883.1
type: Protein
SIO_000068: ncbiprotein

position:15793284:-1
position: 15793284
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15793916:-1
position: 15793916
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15793284-15793916:-1:exon

LOC100599235
type: Gene
subclass of: SO_0000704
RO_0002162: 61853
gene: LOC100599235
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(15810792..>15811430)
location: region:15810792-15811430:-1
so has part: feature:15810792-15811430:-1:exon
subclass of: SO_0000010

100599235
type: Gene
SIO_000068: ncbigene

position:15810792:-1
position: 15810792
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15811430:-1
position: 15811430
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15810792-15811430:-1:exon

LOC100599235
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 61853
gene: LOC100599235
product: keratin-associated protein 27-1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 36% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_003263836.3
SIO_010081: LOC100599235
subclass of: SO_0000673
so part of: LOC100599235
location: complement(15810792..>15811430)
location: region:15810792-15811430:-1
so has part: feature:15810792-15811430:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:15810792-15811430:-1:exon

LOC100599235
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61853
gene: LOC100599235
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: keratin-associated protein 27-1
translation: IKDFSSIPHSHCHSLRSFDKAPPLSAITHGTNPISFEDGLCLPSSFHSRTWLLDNFQETCNETTSCQMTDCEQDLFTDDSCVQSNCLPGVVQTTYSNSRPCERTACQSESSSAGLACVSQPCQSESTQQMGFVAQSCQPASLKGNSCPPKTSESKNFQTLECASSQCQSQNPESSSCRPLASVAPEPQLLESSSSTYEPTCCVTGGFQLPSK
SIO_010081: LOC100599235
subclass of: SO_0000673
so part of: LOC100599235
location: complement(15810792..>15811430)
location: region:15810792-15811430:-1
so has part: feature:15810792-15811430:-1:exon

XP_003263884.2
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15810792-15811430:-1:exon

LOC115833164
type: Gene
subclass of: SO_0000704
RO_0002162: 61853
gene: LOC115833164
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(15822160..15822356)
location: region:15822160-15822356:-1
so has part: feature:15822160-15822356:-1:exon
subclass of: SO_0000010

115833164
type: Gene
SIO_000068: ncbigene

position:15822160:-1
position: 15822160
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15822356:-1
position: 15822356
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15822160-15822356:-1:exon

LOC115833164
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 61853
gene: LOC115833164
product: keratin-associated protein 23-1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 1 Protein
transcript id: XM_030806329.1
SIO_010081: LOC115833164
subclass of: SO_0000673
so part of: LOC115833164
location: complement(15822160..15822356)
location: region:15822160-15822356:-1
so has part: feature:15822160-15822356:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:15822160-15822356:-1:exon

LOC115833164
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61853
gene: LOC115833164
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: keratin-associated protein 23-1
translation: MSYNCCSGNFSSRSCGGYLCYSGYSCGSSYPSNLVYSTEPLISQHLPAGFLSLQGLSEDLLGNP
SIO_010081: LOC115833164
subclass of: SO_0000673
so part of: LOC115833164
location: complement(15822162..15822356)
location: region:15822162-15822356:-1
so has part: feature:15822162-15822356:-1:exon

XP_030662189.1
type: Protein
SIO_000068: ncbiprotein

position:15822162:-1
position: 15822162
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15822162-15822356:-1:exon

LOC100599920
type: Gene
subclass of: SO_0000704
RO_0002162: 61853
gene: LOC100599920
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(15845517..15846386)
location: region:15845517-15846386:-1
so has part: feature:15845517-15846386:-1:exon
subclass of: SO_0000010

100599920
type: Gene
SIO_000068: ncbigene

position:15845517:-1
position: 15845517
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15846386:-1
position: 15846386
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15845517-15846386:-1:exon

LOC100599920
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 61853
gene: LOC100599920
product: keratin-associated protein 13-2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 mRNAs, 5 ESTs, 14 Proteins
transcript id: XM_003263838.3
SIO_010081: LOC100599920
subclass of: SO_0000673
so part of: LOC100599920
location: complement(15845517..15846386)
location: region:15845517-15846386:-1
so has part: feature:15845517-15846386:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:15845517-15846386:-1:exon

LOC100599920
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61853
gene: LOC100599920
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: keratin-associated protein 13-2
translation: MSYNCCSGKFSSRSCGSYLRYPASSCGFSYPSNLVYSTDLCSPSTCQLGSSLYRGCQETCWEPTSCQTSCVESSPCQTSCYRPRTSLLCSPCQTTYSGSLGCGSSSCRSLGYGSRSCYSVGCGSSGFRSLGYGGCGFPPLSYGSGFCRPTYLASRSCQSPCYRPAYGSTFCRSTC
SIO_010081: LOC100599920
subclass of: SO_0000673
so part of: LOC100599920
location: complement(15845807..15846334)
location: region:15845807-15846334:-1
so has part: feature:15845807-15846334:-1:exon

XP_003263886.1
type: Protein
SIO_000068: ncbiprotein

position:15845807:-1
position: 15845807
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15846334:-1
position: 15846334
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15845807-15846334:-1:exon

LOC100600259
type: Gene
subclass of: SO_0000704
RO_0002162: 61853
gene: LOC100600259
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 15860539..15861372
location: region:15860539-15861372:1
so has part: feature:15860539-15861372:1:exon
subclass of: SO_0000010

100600259
type: Gene
SIO_000068: ncbigene

position:15860539:1
position: 15860539
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15861372:1
position: 15861372
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15860539-15861372:1:exon

LOC100600259
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 61853
gene: LOC100600259
product: keratin-associated protein 13-1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 mRNAs, 14 Proteins
transcript id: XM_003263839.4
SIO_010081: LOC100600259
subclass of: SO_0000673
so part of: LOC100600259
location: 15860539..15861372
location: region:15860539-15861372:1
so has part: feature:15860539-15861372:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:15860539-15861372:1:exon

LOC100600259
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61853
gene: LOC100600259
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: keratin-associated protein 13-1
translation: MSYNCCSGNFSSRSCGGYLRYPASSCGFSYPGNLVYSTDLCSPGTCQLGSSLYRGCQETCWEPTSCQTSCVESSPCQTSCYRPRTSLLCSPCQTTYSGSLGCGSSSYRSLGYGSRSCYSVGCGSSGFRSLGYGGCGFPSRGYGSGFCRPTYLASRSCQSSCYRPTCGSGFYY
SIO_010081: LOC100600259
subclass of: SO_0000673
so part of: LOC100600259
location: 15860643..15861161
location: region:15860643-15861161:1
so has part: feature:15860643-15861161:1:exon

XP_003263887.2
type: Protein
SIO_000068: ncbiprotein

position:15860643:1
position: 15860643
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15861161:1
position: 15861161
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15860643-15861161:1:exon

LOC100600582
type: Gene
subclass of: SO_0000704
RO_0002162: 61853
gene: LOC100600582
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(15883995..15884525)
location: region:15883995-15884525:-1
so has part: feature:15883995-15884525:-1:exon
subclass of: SO_0000010

100600582
type: Gene
SIO_000068: ncbigene

position:15883995:-1
position: 15883995
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15884525:-1
position: 15884525
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15883995-15884525:-1:exon

LOC100600582
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 61853
gene: LOC100600582
product: keratin-associated protein 13-3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 4 Proteins
transcript id: XM_003263840.3
SIO_010081: LOC100600582
subclass of: SO_0000673
so part of: LOC100600582
location: complement(15883995..15884525)
location: region:15883995-15884525:-1
so has part: feature:15883995-15884525:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:15883995-15884525:-1:exon

LOC100600582
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61853
gene: LOC100600582
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: keratin-associated protein 13-3
translation: MSYNCCSGSFSSCSCGGYLHYPGSSCGSSYPSNLVYSTDLCSPSTCQLGSSLCRGSQETCWRPNSCQTLCVESSPCRTSCYYPRTHMLCNSCPTMHVGSRGFGSNSCCSLSCRSRSCSSLGCESNGFRYLNYRIHTLPSQSCRSRFCHPIYFPSRRWFHSSCYQPFCRSGFY
SIO_010081: LOC100600582
subclass of: SO_0000673
so part of: LOC100600582
location: complement(15884003..15884521)
location: region:15884003-15884521:-1
so has part: feature:15884003-15884521:-1:exon

XP_003263888.1
type: Protein
SIO_000068: ncbiprotein

position:15884003:-1
position: 15884003
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15884521:-1
position: 15884521
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15884003-15884521:-1:exon

LOC100600937
type: Gene
subclass of: SO_0000704
RO_0002162: 61853
gene: LOC100600937
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 15888826..15889505
location: region:15888826-15889505:1
so has part: feature:15888826-15889505:1:exon
subclass of: SO_0000010

100600937
type: Gene
SIO_000068: ncbigene

position:15888826:1
position: 15888826
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15889505:1
position: 15889505
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15888826-15889505:1:exon

LOC100600937
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 61853
gene: LOC100600937
product: keratin-associated protein 13-4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 10 Proteins
transcript id: XM_003263841.3
SIO_010081: LOC100600937
subclass of: SO_0000673
so part of: LOC100600937
location: 15888826..15889505
location: region:15888826-15889505:1
so has part: feature:15888826-15889505:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:15888826-15889505:1:exon

LOC100600937
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61853
gene: LOC100600937
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: keratin-associated protein 13-4
translation: MSYNCCSRNFSSRSFGGYLYYPGSCPSSLVYSTALCSPSTCQLGSSLYRDCQKTCWEPASCQKSCYHPRTSMLCCPCQTTCSGSLGFGSSSCRSQGYGSRSCYSLGNGSSGFRFLKYGGCGFPSLSYGSRFCYPNYLASGAWQSSCYRPICGSRFYQFTC
SIO_010081: LOC100600937
subclass of: SO_0000673
so part of: LOC100600937
location: 15888889..15889371
location: region:15888889-15889371:1
so has part: feature:15888889-15889371:1:exon

XP_003263889.1
type: Protein
SIO_000068: ncbiprotein

position:15888889:1
position: 15888889
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15889371:1
position: 15889371
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15888889-15889371:1:exon

LOC115833128
type: Gene
subclass of: SO_0000704
RO_0002162: 61853
gene: LOC115833128
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 15891724..15899298
location: region:15891724-15899298:1
so has part: feature:15891724-15899298:1:exon
subclass of: SO_0000010

115833128
type: Gene
SIO_000068: ncbigene

position:15891724:1
position: 15891724
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15899298:1
position: 15899298
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15891724-15899298:1:exon

LOC115833128
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 61853
gene: LOC115833128
product: keratin-associated protein 15-1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins
transcript id: XM_030805980.1
SIO_010081: LOC115833128
subclass of: SO_0000673
so part of: LOC115833128
location: join(15891724..15891738,15895152..15895519,15898872..15899298)
location: region:15891724-15899298:1
so has part: feature:15891724-15891738:1:exon
so has part: feature:15895152-15895519:1:exon
so has part: feature:15898872-15899298:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:15891724-15891738:1:exon

position:15891738:1
position: 15891738
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:15895152-15895519:1:exon

position:15895152:1
position: 15895152
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15895519:1
position: 15895519
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:15898872-15899298:1:exon

position:15898872:1
position: 15898872
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC115833128
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61853
gene: LOC115833128
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: keratin-associated protein 15-1
translation: MVINEGCESIGTITNGLEYTGYIAEGWRATAKRLKAPGSKAQRSRVSHLAGLAEHRGSGAAAGDLAGAGHYTGCLAPGELPAGLLTAPVERRAQLAGAGRAEVSAVDQVAGVGRATREAWVAQVAPTGTSVNVSYNCSSGNFSSCCFGGYLGYPVSTYNSFYPSNAIYSPNTCQLGSSVYNGCQETYCEPTSCQTSCTLAKSYQTSCYCPKNSIFCSPHQTNYIRSLGCGNTGLGSLGCGSTGFQSLDCGSSFYHPTTFSSRNFQATRY
SIO_010081: LOC115833128
subclass of: SO_0000673
so part of: LOC115833128
location: join(15891724..15891738,15895152..15895519,15898872..15899298)
location: region:15891724-15899298:1
so has part: feature:15891724-15891738:1:exon
so has part: feature:15895152-15895519:1:exon
so has part: feature:15898872-15899298:1:exon

XP_030661840.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15891724-15891738:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:15895152-15895519:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:15898872-15899298:1:exon

LOC105738720
type: Gene
subclass of: SO_0000704
RO_0002162: 61853
gene: LOC105738720
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(15940654..15941328)
location: region:15940654-15941328:-1
so has part: feature:15940654-15941328:-1:exon
subclass of: SO_0000010

105738720
type: Gene
SIO_000068: ncbigene

position:15940654:-1
position: 15940654
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15941328:-1
position: 15941328
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15940654-15941328:-1:exon

LOC105738720
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 61853
gene: LOC105738720
product: keratin-associated protein 19-3, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 mRNAs, 5 ESTs, 1 Protein
transcript id: XM_012501789.1
SIO_010081: LOC105738720
subclass of: SO_0000673
so part of: LOC105738720
location: complement(15940654..15941328)
location: region:15940654-15941328:-1
so has part: feature:15940654-15941328:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:15940654-15941328:-1:exon

LOC105738720
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 61853
gene: LOC105738720
product: keratin-associated protein 19-3, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 ESTs, 3 Proteins
transcript id: XM_012501790.2
SIO_010081: LOC105738720
subclass of: SO_0000673
so part of: LOC105738720
location: complement(join(15940654..15941095,15941192..15941276))
location: region:15940654-15941276:-1
so has part: feature:15941192-15941276:-1:exon
so has part: feature:15940654-15941095:-1:exon

position:15941276:-1
position: 15941276
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15941192-15941276:-1:exon

position:15941192:-1
position: 15941192
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:15940654-15941095:-1:exon

position:15941095:-1
position: 15941095
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC105738720
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 61853
gene: LOC105738720
product: keratin-associated protein 19-3, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 ESTs, 3 Proteins
transcript id: XM_030806318.1
SIO_010081: LOC105738720
subclass of: SO_0000673
so part of: LOC105738720
location: complement(join(15940654..15941068,15941150..15941276))
location: region:15940654-15941276:-1
so has part: feature:15941150-15941276:-1:exon
so has part: feature:15940654-15941068:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:15941150-15941276:-1:exon

position:15941150:-1
position: 15941150
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:15940654-15941068:-1:exon

position:15941068:-1
position: 15941068
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC105738720
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61853
gene: LOC105738720
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: keratin-associated protein 19-3 isoform X3
translation: MSYYGNYYGGLGYGCGGFGGLGYGYGCGCYGYGSGCGGYGYGCCRPSYYGGYGFSGFY
SIO_010081: LOC105738720
subclass of: SO_0000673
so part of: LOC105738720
location: complement(join(15941004..15941095,15941192..15941276))
location: region:15941004-15941276:-1
so has part: feature:15941192-15941276:-1:exon
so has part: feature:15941004-15941095:-1:exon

XP_012357244.1
type: Protein
SIO_000068: ncbiprotein

position:15941004:-1
position: 15941004
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15941192-15941276:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:15941004-15941095:-1:exon

LOC105738720
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61853
gene: LOC105738720
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: keratin-associated protein 19-3 isoform X2
translation: MSYYGNYYGGLGYGCGGFGGLGYGYGCGCGSFRRLGSGCGYGGYGYGCCRPSYYGGYGFSGFY
SIO_010081: LOC105738720
subclass of: SO_0000673
so part of: LOC105738720
location: complement(join(15941004..15941068,15941150..15941276))
location: region:15941004-15941276:-1
so has part: feature:15941150-15941276:-1:exon
so has part: feature:15941004-15941068:-1:exon

XP_030662178.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15941150-15941276:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:15941004-15941068:-1:exon

LOC105738720
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61853
gene: LOC105738720
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: keratin-associated protein 19-3 isoform X1
translation: MSYYGNYYGGLGYGCGGFGGLGYGYGCGCGSFRRLGSGCGYGGYRYGSGFGGYGYGSGFGGYGYGSGCGGYGYGCCRPSYYGGYGFSGFY
SIO_010081: LOC105738720
subclass of: SO_0000673
so part of: LOC105738720
location: complement(15941004..15941276)
location: region:15941004-15941276:-1
so has part: feature:15941004-15941276:-1:exon

XP_012357243.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15941004-15941276:-1:exon

LOC115833162
type: Gene
subclass of: SO_0000704
RO_0002162: 61853
gene: LOC115833162
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(15948505..15949035)
location: region:15948505-15949035:-1
so has part: feature:15948505-15949035:-1:exon
subclass of: SO_0000010

115833162
type: Gene
SIO_000068: ncbigene

position:15948505:-1
position: 15948505
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15949035:-1
position: 15949035
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15948505-15949035:-1:exon

LOC115833162
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 61853
gene: LOC115833162
product: keratin-associated protein 19-5
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 mRNAs, 1 Protein, and 17% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_030806317.1
SIO_010081: LOC115833162
subclass of: SO_0000673
so part of: LOC115833162
location: complement(15948505..15949035)
location: region:15948505-15949035:-1
so has part: feature:15948505-15949035:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:15948505-15949035:-1:exon

LOC115833162
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61853
gene: LOC115833162
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: keratin-associated protein 19-5
translation: MNYYGNYYRGLGYGYGGFDDLGYGYGCGCGSFRRLGYGGCYGGYGYGSGFGGYGYRSCRPSCYGGYGFSGFY
SIO_010081: LOC115833162
subclass of: SO_0000673
so part of: LOC115833162
location: complement(15948710..15948928)
location: region:15948710-15948928:-1
so has part: feature:15948710-15948928:-1:exon

XP_030662177.1
type: Protein
SIO_000068: ncbiprotein

position:15948710:-1
position: 15948710
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15948928:-1
position: 15948928
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15948710-15948928:-1:exon

LOC115833172
type: Gene
subclass of: SO_0000704
RO_0002162: 61853
gene: LOC115833172
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(15980654..15981095)
location: region:15980654-15981095:-1
so has part: feature:15980654-15981095:-1:exon
subclass of: SO_0000010

115833172
type: Gene
SIO_000068: ncbigene

position:15980654:-1
position: 15980654
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15981095:-1
position: 15981095
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15980654-15981095:-1:exon

LOC115833172
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 61853
gene: LOC115833172
product: keratin-associated protein 19-7
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 mRNAs, 3 Proteins
transcript id: XM_030806359.1
SIO_010081: LOC115833172
subclass of: SO_0000673
so part of: LOC115833172
location: complement(15980654..15981095)
location: region:15980654-15981095:-1
so has part: feature:15980654-15981095:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:15980654-15981095:-1:exon

LOC115833172
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61853
gene: LOC115833172
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: keratin-associated protein 19-7
translation: MTYSGSYCGGLGYSCGGFGGLGYGYSCGCGSFRNLGYGCGYGGYRYSCCHPSCYGGYWSSGFY
SIO_010081: LOC115833172
subclass of: SO_0000673
so part of: LOC115833172
location: complement(15980877..15981068)
location: region:15980877-15981068:-1
so has part: feature:15980877-15981068:-1:exon

XP_030662219.1
type: Protein
SIO_000068: ncbiprotein

position:15980877:-1
position: 15980877
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15981068:-1
position: 15981068
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15980877-15981068:-1:exon

LOC115833151
type: Gene
subclass of: SO_0000704
RO_0002162: 61853
gene: LOC115833151
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(16010357..16010494)
location: region:16010357-16010494:-1
so has part: feature:16010357-16010494:-1:exon
subclass of: SO_0000010

115833151
type: Gene
SIO_000068: ncbigene

position:16010357:-1
position: 16010357
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16010494:-1
position: 16010494
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16010357-16010494:-1:exon

LOC115833151
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 61853
gene: LOC115833151
product: keratin-associated protein 22-2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
transcript id: XM_030806260.1
SIO_010081: LOC115833151
subclass of: SO_0000673
so part of: LOC115833151
location: complement(16010357..16010494)
location: region:16010357-16010494:-1
so has part: feature:16010357-16010494:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:16010357-16010494:-1:exon

LOC115833151
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61853
gene: LOC115833151
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: substituted 1 base at 1 genomic stop codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
transl except: (pos:complement(16010474..16010476), aa:OTHER)
product: LOW QUALITY PROTEIN: keratin-associated protein 22-2
translation: MCCYHNXYGSLDYGCSCGSEYGNSGHACNFPCSYGRFLLAPTKKF
SIO_010081: LOC115833151
subclass of: SO_0000673
so part of: LOC115833151
location: complement(16010357..16010494)
location: region:16010357-16010494:-1
so has part: feature:16010357-16010494:-1:exon

XP_030662120.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16010357-16010494:-1:exon

LOC115833138
type: Gene
subclass of: SO_0000704
RO_0002162: 61853
gene: LOC115833138
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 16022020..16022166
location: region:16022020-16022166:1
so has part: feature:16022020-16022166:1:exon
subclass of: SO_0000010

115833138
type: Gene
SIO_000068: ncbigene

position:16022020:1
position: 16022020
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16022166:1
position: 16022166
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16022020-16022166:1:exon

LOC115833138
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 61853
gene: LOC115833138
product: keratin-associated protein 22-1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
transcript id: XM_030806125.1
SIO_010081: LOC115833138
subclass of: SO_0000673
so part of: LOC115833138
location: 16022020..16022166
location: region:16022020-16022166:1
so has part: feature:16022020-16022166:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:16022020-16022166:1:exon

LOC115833138
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61853
gene: LOC115833138
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: substituted 1 base at 1 genomic stop codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
transl except: (pos:16022128..16022130,aa:OTHER)
product: LOW QUALITY PROTEIN: keratin-associated protein 22-1
translation: MSFDNNYHSGQGYAKGGLGCSYGCGHSGYGYACYCPXCYERSWFSGCF
SIO_010081: LOC115833138
subclass of: SO_0000673
so part of: LOC115833138
location: 16022020..16022166
location: region:16022020-16022166:1
so has part: feature:16022020-16022166:1:exon

XP_030661985.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16022020-16022166:1:exon

LOC105738732
type: Gene
subclass of: SO_0000704
RO_0002162: 61853
gene: LOC105738732
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(16034333..16034820)
location: region:16034333-16034820:-1
so has part: feature:16034333-16034820:-1:exon
subclass of: SO_0000010

105738732
type: Gene
SIO_000068: ncbigene

position:16034333:-1
position: 16034333
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16034820:-1
position: 16034820
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16034333-16034820:-1:exon

LOC105738732
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 61853
gene: LOC105738732
product: keratin-associated protein 6-1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs
transcript id: XM_012501805.2
SIO_010081: LOC105738732
subclass of: SO_0000673
so part of: LOC105738732
location: complement(16034333..16034820)
location: region:16034333-16034820:-1
so has part: feature:16034333-16034820:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:16034333-16034820:-1:exon

LOC105738732
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61853
gene: LOC105738732
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: keratin-associated protein 6-1
translation: MCGSYYGNYYGTRGYGCCGYGGLGCGYGGLGCGYGSCCGCGFRRLGCGYGYGYRSLCDYGYGCGSGSGYYY
SIO_010081: LOC105738732
subclass of: SO_0000673
so part of: LOC105738732
location: complement(16034585..16034800)
location: region:16034585-16034800:-1
so has part: feature:16034585-16034800:-1:exon

XP_012357259.2
type: Protein
SIO_000068: ncbiprotein

position:16034585:-1
position: 16034585
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16034800:-1
position: 16034800
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16034585-16034800:-1:exon

LOC115833125
type: Gene
subclass of: SO_0000704
RO_0002162: 61853
gene: LOC115833125
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 16037309..16037571
location: region:16037309-16037571:1
so has part: feature:16037309-16037571:1:exon
subclass of: SO_0000010

115833125
type: Gene
SIO_000068: ncbigene

position:16037309:1
position: 16037309
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16037571:1
position: 16037571
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16037309-16037571:1:exon

LOC115833125
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 61853
gene: LOC115833125
product: keratin-associated protein 20-1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 mRNAs, 1 Protein
transcript id: XM_030805971.1
SIO_010081: LOC115833125
subclass of: SO_0000673
so part of: LOC115833125
location: 16037309..16037571
location: region:16037309-16037571:1
so has part: feature:16037309-16037571:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:16037309-16037571:1:exon

LOC115833125
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61853
gene: LOC115833125
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: keratin-associated protein 20-1
translation: MIYYSNYYGGYGYGGLGCGYGCGYRGYGCGYRGYGGYGNGYCCPSCYGRYWSYGFY
SIO_010081: LOC115833125
subclass of: SO_0000673
so part of: LOC115833125
location: 16037333..16037503
location: region:16037333-16037503:1
so has part: feature:16037333-16037503:1:exon

XP_030661831.1
type: Protein
SIO_000068: ncbiprotein

position:16037333:1
position: 16037333
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16037503:1
position: 16037503
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16037333-16037503:1:exon

LOC115833136
type: Gene
subclass of: SO_0000704
RO_0002162: 61853
gene: LOC115833136
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 16041564..16041693
location: region:16041564-16041693:1
so has part: feature:16041564-16041693:1:exon
subclass of: SO_0000010

115833136
type: Gene
SIO_000068: ncbigene

position:16041564:1
position: 16041564
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16041693:1
position: 16041693
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16041564-16041693:1:exon

LOC115833136
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 61853
gene: LOC115833136
product: putative keratin-associated protein 20-4
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
transcript id: XM_030806100.1
SIO_010081: LOC115833136
subclass of: SO_0000673
so part of: LOC115833136
location: 16041564..16041693
location: region:16041564-16041693:1
so has part: feature:16041564-16041693:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:16041564-16041693:1:exon

LOC115833136
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61853
gene: LOC115833136
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: putative keratin-associated protein 20-4
translation: MSYYSHLSGGLGCGXVAVTMGRTVAVAEYDRCRHGCHSSYSAR
SIO_010081: LOC115833136
subclass of: SO_0000673
so part of: LOC115833136
location: 16041564..16041693
location: region:16041564-16041693:1
so has part: feature:16041564-16041693:1:exon

XP_030661960.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16041564-16041693:1:exon

LOC100603647
type: Gene
subclass of: SO_0000704
RO_0002162: 61853
gene: LOC100603647
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 16065887..16066147
location: region:16065887-16066147:1
so has part: feature:16065887-16066147:1:exon
subclass of: SO_0000010

100603647
type: Gene
SIO_000068: ncbigene

position:16065887:1
position: 16065887
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16066147:1
position: 16066147
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16065887-16066147:1:exon