Nomascus leucogenys mitochondrion, complete genome.
type: Entry
definition: Nomascus leucogenys mitochondrion, complete genome.
sequence version: NC_021957.1
sequence date: 2023-04-03
sequence: sequence
division: PRI
label: NC_021957.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA927338
keyword: RefSeq
source: mitochondrion Nomascus leucogenys (northern white-cheeked gibbon)
organism: Nomascus leucogenys
taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hylobatidae; Nomascus.
reference: 1
references: 23874967
reference: 2
reference: 3
comment: REVIEWED REFSEQ: This record has been curated by NCBI staff. The\nreference sequence is identical to KC757404.\n\n##Assembly-Data-START##\nAssembly Method :: Newbler v. 2.0.00.20\nSequencing Technology :: 454; Sanger dideoxy sequencing\n##Assembly-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000819
sequence length: 16478
topology: circular
so has quality: SO_0000988
location: 1..16478
location: region:1-16478:1
RO_0002162: 61853

NC_021957
type: RefSeq
SIO_000068: refseq

PRJNA927338
type: BioProject
SIO_000068: bioproject

1
title: A mitogenomic phylogeny of living primates
author: Finstermeier, K.
author: Zinner, D.
author: Brameier, M.
author: Meyer, M.
author: Kreuz, E.
author: Hofreiter, M.
author: Roos, C.
journal: PLoS ONE 8 (7), E69504 (2013)
pubmed: 23874967
comments: Publication Status: Online-Only

23874967
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
journal: Submitted (06-AUG-2013) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA

3
title: Direct Submission
author: Finstermeier, K.
journal: Submitted (06-MAR-2013) Institute of Laboratory Medicine, Clinical Chemistry, and Molecular Diagnostics, University of Leipzig, Liebigstrasse 27, Leipzig, Saxony 04103, Germany

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16478:1
position: 16478
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-16478:1:source
so part of: sequence
organism: Nomascus leucogenys
organelle: mitochondrion
mol type: genomic DNA
PCR primers: fwd_name: prim_8kb_f, fwd_seq: ggctttctcaacttttaaaggata, rev_name: prim_8kb_r, rev_seq: tgtcctgatccaacatcgag
PCR primers: fwd_name: prim_10kb_f, fwd_seq: ccgtgcaaaggtagcataatc, rev_name: prim_10kb_r, rev_seq: ttacttttatttggagttgcacca

61853
type: Taxonomy
SIO_000068: taxonomy

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 61853
product: tRNA-Phe
so part of: sequence
location: 1..70
location: region:1-70:1
so has part: feature:1-70:1:region

position:70:1
position: 70
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-70:1:region

rRNA
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 61853
product: 12S ribosomal RNA
so part of: sequence
location: 71..1021
location: region:71-1021:1
so has part: feature:71-1021:1:region

position:71:1
position: 71
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1021:1
position: 1021
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:71-1021:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 61853
product: tRNA-Val
so part of: sequence
location: 1023..1091
location: region:1023-1091:1
so has part: feature:1023-1091:1:region

position:1023:1
position: 1023
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1091:1
position: 1091
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1023-1091:1:region

rRNA
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 61853
product: 16S ribosomal RNA
so part of: sequence
location: 1092..2648
location: region:1092-2648:1
so has part: feature:1092-2648:1:region

position:1092:1
position: 1092
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2648:1
position: 2648
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1092-2648:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 61853
product: tRNA-Leu
so part of: sequence
location: 2650..2724
location: region:2650-2724:1
so has part: feature:2650-2724:1:region

position:2650:1
position: 2650
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2724:1
position: 2724
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2650-2724:1:region

ND1
type: Gene
subclass of: SO_0000704
RO_0002162: 61853
gene: ND1
so part of: sequence
location: 2727..3682
location: region:2727-3682:1
so has part: feature:2727-3682:1:exon
subclass of: SO_0000010

16545241
type: Gene
SIO_000068: ncbigene

position:2727:1
position: 2727
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3682:1
position: 3682
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2727-3682:1:exon

ND1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61853
gene: ND1
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:3681..3682,aa:TERM)
transl table: 2
product: NADH dehydrogenase subunit 1
translation: MPATNLLLLILPTLIAMAFLMLTERKILGYTQLRKGPNVVGPYGLLQPFADAMKLFTKEPLKPSTSTTTLYIIAPTLALTIALLLWTPLPMPNPLINLNLGLLFILATSSLTVYSILWSGWASNSNYALIGALRAVAQTISYEVTLAIILLSVLLMNGSFNLSTLITTQEHIWLLLPTWPLAMMWFISTLAETNRTPFDLTEGESELVSGFNTEYAAGPFALFFMAEYMNIIMMNALTNMIFLGTTYDAHLPELYTTCFAVKTLLLTSLFLWIRTTYPRFRYDQLMYLLWKNFLPLTLALLMWHLSLSAMIASIPPQT
SIO_010081: ND1
subclass of: SO_0000673
so part of: ND1
location: 2727..3682
location: region:2727-3682:1
so has part: feature:2727-3682:1:exon

YP_008379099.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2727-3682:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 61853
product: tRNA-Ile
so part of: sequence
location: 3683..3751
location: region:3683-3751:1
so has part: feature:3683-3751:1:region

position:3683:1
position: 3683
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3751:1
position: 3751
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3683-3751:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 61853
product: tRNA-Gln
so part of: sequence
location: complement(3749..3820)
location: region:3749-3820:-1
so has part: feature:3749-3820:-1:region

position:3749:-1
position: 3749
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3820:-1
position: 3820
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3749-3820:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 61853
product: tRNA-Met
so part of: sequence
location: 3821..3888
location: region:3821-3888:1
so has part: feature:3821-3888:1:region

position:3821:1
position: 3821
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3888:1
position: 3888
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3821-3888:1:region

ND2
type: Gene
subclass of: SO_0000704
RO_0002162: 61853
gene: ND2
so part of: sequence
location: 3889..4930
location: region:3889-4930:1
so has part: feature:3889-4930:1:exon
subclass of: SO_0000010

16545240
type: Gene
SIO_000068: ncbigene

position:3889:1
position: 3889
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4930:1
position: 4930
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3889-4930:1:exon

ND2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61853
gene: ND2
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:4930,aa:TERM)
transl table: 2
product: NADH dehydrogenase subunit 2
translation: MNPLAQPIIYSAVFAGTLIAASSSHWFLTWVGLEMNMLAFIPILTKKTNPRSTEAAIKYFLVQATASMILMMAILSNNLLSGQWTMTSTTNQYSSLMILTALAMKLGMAPFHFWVPEVTQGTTLTSGLLLLTWQKLAPISIMYQIFPVVNTNILLTFSTLSIMVGSWGGLNQTQLRKILAYSSITHMGWMMAILPYNPNITIFNLTIYIVLTTTAFLALNLNSSTTTLLLSRSWNKLTWLLPLIPSTLLSLGGLPPLSGFLPKWLVIEELTKNGSLVIPTIMAIITLANLYFYTRLIYSTSITLFPASNNVKMKWQFENTKPTLLLPTLTVLTTLLLPIAPLMSPTP
SIO_010081: ND2
subclass of: SO_0000673
so part of: ND2
location: 3889..4930
location: region:3889-4930:1
so has part: feature:3889-4930:1:exon

YP_008379100.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3889-4930:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 61853
product: tRNA-Trp
so part of: sequence
location: 4931..4999
location: region:4931-4999:1
so has part: feature:4931-4999:1:region

position:4931:1
position: 4931
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4999:1
position: 4999
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4931-4999:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 61853
product: tRNA-Ala
so part of: sequence
location: complement(5009..5077)
location: region:5009-5077:-1
so has part: feature:5009-5077:-1:region

position:5009:-1
position: 5009
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5077:-1
position: 5077
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5009-5077:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 61853
product: tRNA-Asn
so part of: sequence
location: complement(5079..5152)
location: region:5079-5152:-1
so has part: feature:5079-5152:-1:region

position:5079:-1
position: 5079
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5152:-1
position: 5152
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5079-5152:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 61853
product: tRNA-Cys
so part of: sequence
location: complement(5184..5249)
location: region:5184-5249:-1
so has part: feature:5184-5249:-1:region

position:5184:-1
position: 5184
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5249:-1
position: 5249
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5184-5249:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 61853
product: tRNA-Tyr
so part of: sequence
location: complement(5249..5314)
location: region:5249-5314:-1
so has part: feature:5249-5314:-1:region

position:5314:-1
position: 5314
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5249-5314:-1:region

COX1
type: Gene
subclass of: SO_0000704
RO_0002162: 61853
gene: COX1
so part of: sequence
location: 5325..6875
location: region:5325-6875:1
so has part: feature:5325-6875:1:exon
subclass of: SO_0000010

16545239
type: Gene
SIO_000068: ncbigene

position:5325:1
position: 5325
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6875:1
position: 6875
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5325-6875:1:exon

COX1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61853
gene: COX1
codon start: 1
transl table: 2
product: cytochrome c oxidase subunit I
translation: MFADRWLFSTNHKDIGTLYLLFGAWAGVLGTALSLLIRAELGQPGNLLGNDHIYNVIVTAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASAMVEAGAGTGWTVYPPLAGNYSHPGASVDLTIFSLHLAGVSSILGAINFITTIINMKPPAMSQYQTPLFVWSVLITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISHIVTHYSGKKEPFGYMGMVWAMMSIGFLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGSDTKWSAAVLWALGFIFLFTVGGLTGIVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFAIMGGFVHWFPLFSGYTLDQTYAKIHFAIMFVGVNLTFFPQHFLGLSGMPRRYSDYPDAYTTWNILSSVGSFISLTAVMLMIFMVWEAFASKRKILMIEQPSTNLEWLYGCPPPYHTFEEPVYMKPKQK
SIO_010081: COX1
subclass of: SO_0000673
so part of: COX1
location: 5325..6875
location: region:5325-6875:1
so has part: feature:5325-6875:1:exon

YP_008379101.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5325-6875:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 61853
product: tRNA-Ser
so part of: sequence
location: complement(6867..6935)
location: region:6867-6935:-1
so has part: feature:6867-6935:-1:region

position:6867:-1
position: 6867
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6935:-1
position: 6935
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6867-6935:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 61853
product: tRNA-Asp
so part of: sequence
location: 6938..7006
location: region:6938-7006:1
so has part: feature:6938-7006:1:region

position:6938:1
position: 6938
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7006:1
position: 7006
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6938-7006:1:region

COX2
type: Gene
subclass of: SO_0000704
RO_0002162: 61853
gene: COX2
so part of: sequence
location: 7007..7690
location: region:7007-7690:1
so has part: feature:7007-7690:1:exon
subclass of: SO_0000010

16545238
type: Gene
SIO_000068: ncbigene

position:7007:1
position: 7007
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7690:1
position: 7690
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7007-7690:1:exon

COX2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61853
gene: COX2
codon start: 1
transl table: 2
product: cytochrome c oxidase subunit II
translation: MAHATQVGLQDATSPIMEELISFHDHALMIIFLISFLVLYALFLTLTTKLTNTNITDAQEMETIWTILPAIILVLIALPSLRILYLTDEINDPSLTIKAIGHQWYWAYEYTDYGGLVFNSYMLPPLFLEPGDLRLLEVDNRVVLPIEAPVRMMITSQDVLHSWTVPSLGLKTDAIPGRLNQTTFTATRPGVYYGQCSEICGANHSFMPIVLELIPLKIFEMGPVFTL
SIO_010081: COX2
subclass of: SO_0000673
so part of: COX2
location: 7007..7690
location: region:7007-7690:1
so has part: feature:7007-7690:1:exon

YP_008379102.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7007-7690:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 61853
product: tRNA-Lys
so part of: sequence
location: 7719..7788
location: region:7719-7788:1
so has part: feature:7719-7788:1:region

position:7719:1
position: 7719
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7788:1
position: 7788
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7719-7788:1:region

ATP8
type: Gene
subclass of: SO_0000704
RO_0002162: 61853
gene: ATP8
so part of: sequence
location: 7790..7996
location: region:7790-7996:1
so has part: feature:7790-7996:1:exon
subclass of: SO_0000010

16545237
type: Gene
SIO_000068: ncbigene

position:7790:1
position: 7790
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7996:1
position: 7996
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7790-7996:1:exon

ATP8
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61853
gene: ATP8
codon start: 1
transl table: 2
product: ATP synthase F0 subunit 8
translation: MPQLNTTVWPTIIMSMLLALFLLIQLKTLNMHYHPPASPKLTDTKPHNNPWEHKWTKIYSLHSLPPQS
SIO_010081: ATP8
subclass of: SO_0000673
so part of: ATP8
location: 7790..7996
location: region:7790-7996:1
so has part: feature:7790-7996:1:exon

YP_008379103.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7790-7996:1:exon

ATP6
type: Gene
subclass of: SO_0000704
RO_0002162: 61853
gene: ATP6
so part of: sequence
location: 7951..8631
location: region:7951-8631:1
so has part: feature:7951-8631:1:exon
subclass of: SO_0000010

16545236
type: Gene
SIO_000068: ncbigene

position:7951:1
position: 7951
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8631:1
position: 8631
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7951-8631:1:exon

ATP6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61853
gene: ATP6
codon start: 1
transl table: 2
product: ATP synthase F0 subunit 6
translation: MNENLFASFAAPTILDLPAAVPIILFPSLLIPTSKYLINNRLVTTQRWLIQLTLKQMMTMHNAKGRTWSLMLISLITFIATTNLLGLLPHSFTPTTQLSMNLAMAIPLWAGTVATGFRLKAKNTFAHLLPQGTPTPLIPMLIIIETISLFIQPMALAVRLTANITAGHLLMHLIGAATLALSTISLSATPIIFTVLALLTILEVAVALIQAYVFTLLVSLYLHDNT
SIO_010081: ATP6
subclass of: SO_0000673
so part of: ATP6
location: 7951..8631
location: region:7951-8631:1
so has part: feature:7951-8631:1:exon

YP_008379104.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7951-8631:1:exon

COX3
type: Gene
subclass of: SO_0000704
RO_0002162: 61853
gene: COX3
so part of: sequence
location: 8631..9414
location: region:8631-9414:1
so has part: feature:8631-9414:1:exon
subclass of: SO_0000010

16545230
type: Gene
SIO_000068: ncbigene

position:9414:1
position: 9414
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8631-9414:1:exon

COX3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61853
gene: COX3
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:9414,aa:TERM)
transl table: 2
product: cytochrome c oxidase subunit III
translation: MTHQSHAYHMVKPSPWPLTGALSALLLTSGLAMWFHFHTTTLLTLSMLTNALTMFQWWRDVVREGTYQGHHTMPVQKGLRYGMILFITSEIFFFAGFFWAFYHSSLAPTPQLGGHWPPTGITPLNPLEVPLLNTSVLLASGVSITWAHHSLMENNRNQMIQALFITILLGIYFTLLQISEYFEAPFTISDGIYGSTFFVATGFHGLHVIIGSTFLIICLIRQLLFHFTSKHHFGFEAAAWYWHFVDVVWLFLYVSIYWWGS
SIO_010081: COX3
subclass of: SO_0000673
so part of: COX3
location: 8631..9414
location: region:8631-9414:1
so has part: feature:8631-9414:1:exon

YP_008379105.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8631-9414:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 61853
product: tRNA-Gly
so part of: sequence
location: 9415..9482
location: region:9415-9482:1
so has part: feature:9415-9482:1:region

position:9415:1
position: 9415
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9482:1
position: 9482
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9415-9482:1:region

ND3
type: Gene
subclass of: SO_0000704
RO_0002162: 61853
gene: ND3
so part of: sequence
location: 9483..9828
location: region:9483-9828:1
so has part: feature:9483-9828:1:exon
subclass of: SO_0000010

16545229
type: Gene
SIO_000068: ncbigene

position:9483:1
position: 9483
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9828:1
position: 9828
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9483-9828:1:exon

ND3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61853
gene: ND3
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:9828,aa:TERM)
transl table: 2
product: NADH dehydrogenase subunit 3
translation: MNLALAMTISTLLALLLMIITFWLPQLNTYMEKSNPYECGFDPLSPARIPFSMKFFLVAITFLLFDLEIALLLPLPWALQTTNPSLTITSSLTLIIILILSLAYEWSQKGLDWVE
SIO_010081: ND3
subclass of: SO_0000673
so part of: ND3
location: 9483..9828
location: region:9483-9828:1
so has part: feature:9483-9828:1:exon

YP_008379106.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9483-9828:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 61853
product: tRNA-Arg
so part of: sequence
location: 9829..9894
location: region:9829-9894:1
so has part: feature:9829-9894:1:region

position:9829:1
position: 9829
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9894:1
position: 9894
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9829-9894:1:region

ND4L
type: Gene
subclass of: SO_0000704
RO_0002162: 61853
gene: ND4L
so part of: sequence
location: 9895..10191
location: region:9895-10191:1
so has part: feature:9895-10191:1:exon
subclass of: SO_0000010

16545235
type: Gene
SIO_000068: ncbigene

position:9895:1
position: 9895
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10191:1
position: 10191
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9895-10191:1:exon

ND4L
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61853
gene: ND4L
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 4L
translation: MPLIYMNIMLAFTISLLGMLIYRSHLMSSLLCLEGMMLSLFIMSTLMALNTHSLLINIMPIVLLVFAACEAAVGLALLVSISNTYGLDHIHNLNLLQC
SIO_010081: ND4L
subclass of: SO_0000673
so part of: ND4L
location: 9895..10191
location: region:9895-10191:1
so has part: feature:9895-10191:1:exon

YP_008379107.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9895-10191:1:exon

ND4
type: Gene
subclass of: SO_0000704
RO_0002162: 61853
gene: ND4
so part of: sequence
location: 10185..11559
location: region:10185-11559:1
so has part: feature:10185-11559:1:exon
subclass of: SO_0000010

16545234
type: Gene
SIO_000068: ncbigene

position:10185:1
position: 10185
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11559:1
position: 11559
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10185-11559:1:exon

ND4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61853
gene: ND4
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:11559,aa:TERM)
transl table: 2
product: NADH dehydrogenase subunit 4
translation: MLKLIIPTIMLLPLTWLSKKHMIWINTTTHSLIISPIPLLFLSQANNLFIHSPSFSSDPLTTPLLMLTTWLLPLMIMASQHHLSNESLLRKKLYLSMLITLQVSLIMTFTATELMMFYILFETTLIPTLIIITRWGNQPERLNAGSYFLFYTLVGSLPLLIALIHTHNTLGSLNIMLLTLSSPSLANSWSNNIMWLACVMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRLTLILSPLTKHMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIAAILIQTPWSFTGATVLMIAHGLTSSLLFCLANSNYERTHSRTMILSRGLQILLPLMAFWWLTASLANLALPPTINLLGELFVLMASFSWANTTIALTGLNMLITALYSLYMFITTQRGTLTHHIKNMKPSLTRENMLMFMHLFPLLLLSLNPNIITGPTP
SIO_010081: ND4
subclass of: SO_0000673
so part of: ND4
location: 10185..11559
location: region:10185-11559:1
so has part: feature:10185-11559:1:exon

YP_008379108.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10185-11559:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 61853
product: tRNA-His
so part of: sequence
location: 11560..11628
location: region:11560-11628:1
so has part: feature:11560-11628:1:region

position:11560:1
position: 11560
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11628:1
position: 11628
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11560-11628:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 61853
product: tRNA-Ser
so part of: sequence
location: 11629..11687
location: region:11629-11687:1
so has part: feature:11629-11687:1:region

position:11629:1
position: 11629
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11687:1
position: 11687
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11629-11687:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 61853
product: tRNA-Leu
so part of: sequence
location: 11688..11758
location: region:11688-11758:1
so has part: feature:11688-11758:1:region

position:11688:1
position: 11688
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11758:1
position: 11758
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11688-11758:1:region

ND5
type: Gene
subclass of: SO_0000704
RO_0002162: 61853
gene: ND5
so part of: sequence
location: 11765..13570
location: region:11765-13570:1
so has part: feature:11765-13570:1:exon
subclass of: SO_0000010

16545233
type: Gene
SIO_000068: ncbigene

position:11765:1
position: 11765
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13570:1
position: 13570
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11765-13570:1:exon

ND5
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61853
gene: ND5
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 5
translation: MYTTMTILTLISLIPPVATALTNTNKKSSYPHYVKTIIASTFMISLLPTTMFMCTDQEAIISNWHWTAAQTLELSLSFKLDYFSMMFIPVALFVTWSIMEFSLWYMHSDPNINQFFKYLLIFLTTMLILVTANNLFQLFIGWEGVGIMSFLLIGWWYAREEANTAAIQAILYNRIGDIGFILALAWFLFHTNSWEPQQMLLLSTSSNFLPLAGLLLAAAGKSAQLGLHPWLPSAMEGPTPVSALLHSSTMVVAGIFLLIRFHPLMENNQPIQTLTLCLGAITTLFTAICALTQNDIKKIVAFSTSSQLGLMMVTIGINQPHLAFLHICTHAFFKAMLFMCSGSIIHNLNNEQDIRKMGGLFKTLPLTSTSLTIGSLALTGMPFLTGFYSKDPIIETANMSYTNAWALSMTLIATSLTSAYSTRMILLTLTNQPRFPTLININENDPSLLNPIKRLTAGSLLAGFLIINSIPPISPSQTTVPLYLKLTALSVTLLGFLTAFDLYLLANKLKMKNPSHTFRFSNMLGFYPSTIHRTIPYTSLLMSQNLASLLLDLAWLEKSMPKAISHHQISASTTISSQKGMIKLYSLSLLIPLSLALLLIV
SIO_010081: ND5
subclass of: SO_0000673
so part of: ND5
location: 11765..13570
location: region:11765-13570:1
so has part: feature:11765-13570:1:exon

YP_008379109.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11765-13570:1:exon

ND6
type: Gene
subclass of: SO_0000704
RO_0002162: 61853
gene: ND6
so part of: sequence
location: complement(13571..14095)
location: region:13571-14095:-1
so has part: feature:13571-14095:-1:exon
subclass of: SO_0000010

16545232
type: Gene
SIO_000068: ncbigene

position:13571:-1
position: 13571
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14095:-1
position: 14095
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13571-14095:-1:exon

ND6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61853
gene: ND6
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 6
translation: MTYTLFLLSVILVMGFVGFSSKPSPIYGGLVLVVSGVVGCAVILNCGGGYLGLMVFLIYLGGMMVVFGYTTAMAIEEYPEAWGSGVEVLVGVLVGLAMEVGLVLWAKECDGLVMVLNFNNMGSWVIYEGEGSGLIREDSIGAGALYDYGRWLVVVTGWTLLVGVYIVIEIARGN
SIO_010081: ND6
subclass of: SO_0000673
so part of: ND6
location: complement(13571..14095)
location: region:13571-14095:-1
so has part: feature:13571-14095:-1:exon

YP_008379110.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13571-14095:-1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 61853
product: tRNA-Glu
so part of: sequence
location: complement(14096..14164)
location: region:14096-14164:-1
so has part: feature:14096-14164:-1:region

position:14096:-1
position: 14096
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14164:-1
position: 14164
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14096-14164:-1:region

CYTB
type: Gene
subclass of: SO_0000704
RO_0002162: 61853
gene: CYTB
so part of: sequence
location: 14169..15309
location: region:14169-15309:1
so has part: feature:14169-15309:1:exon
subclass of: SO_0000010

16545231
type: Gene
SIO_000068: ncbigene

position:14169:1
position: 14169
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15309:1
position: 15309
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14169-15309:1:exon

CYTB
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61853
gene: CYTB
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:15309,aa:TERM)
transl table: 2
product: cytochrome b
translation: MTPLRKTNPLMKLINHSLVDLPAPSNISMWWNLGSLLGTCLILQIITGLFLAMHYTPDASMAFSSVAHITRDVNYGWVIRYLHANGASMFFICLFLHIGRGMYYGSFLYLETWNIGIILLLATMATAFMGYVLPWGQMSFWGATVITNLLSAVPYIGTDLVQWVWGGYSVDNATLTRFFTFHFILPFIITALVTLHLLFLHETGSNNPLGISSQPDKITFHPYYTTKDILGLFLLLLTLMSLVLFSPDLLGDPDNYIQANPLSTPPHIKPEWYFLFAYAILRSVPNKLGGVLALLLSILILMTIPMLHTAKQQSMMFRPLSQLTYWLWAANLLTLTWIGGQPVSYPFITIGQVTSVLYFITILILMPTASLIENKMLKWT
SIO_010081: CYTB
subclass of: SO_0000673
so part of: CYTB
location: 14169..15309
location: region:14169-15309:1
so has part: feature:14169-15309:1:exon

YP_008379111.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14169-15309:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 61853
product: tRNA-Thr
so part of: sequence
location: 15310..15375
location: region:15310-15375:1
so has part: feature:15310-15375:1:region

position:15310:1
position: 15310
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15375:1
position: 15375
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15310-15375:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 61853
product: tRNA-Pro
so part of: sequence
location: complement(15378..15445)
location: region:15378-15445:-1
so has part: feature:15378-15445:-1:region

position:15378:-1
position: 15378
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15445:-1
position: 15445
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15378-15445:-1:region