Arenibacter algicola strain SMS7 plasmid pSMS7, complete sequence.
Bacteria; Bacteroidota; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Arenibacter.
Genome Sequence of Arenibacter algicola Strain SMS7 Isolated from a culture of the Diatom Skeletonema marinoi
Submitted (19-JUL-2017) Department of Marine Sciences, University of Gothenburg, Carl Skottbergsgata 22B, Gothenburg 413 19, Sweden
REFSEQ INFORMATION: The reference sequence is identical to\nCP022516.1.\nBacteria and source DNA available from Adrian K. Clarke, Department\nof Biological and Environmental Sciences, University of Gothenburg.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: FALCON v. 1.7.5\nAssembly Name :: AreAlgSMS7\nLong Assembly Name :: Arenibacter algicola strain SMS7\nGenome Coverage :: 173.06x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 10/05/2022 18:07:18\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 4,904\nCDSs (total) :: 4,848\nGenes (coding) :: 4,803\nCDSs (with protein) :: 4,803\nGenes (RNA) :: 56\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 43\nncRNAs :: 4\nPseudo Genes (total) :: 45\nCDSs (without protein) :: 45\nPseudo Genes (ambiguous residues) :: 0 of 45\nPseudo Genes (frameshifted) :: 12 of 45\nPseudo Genes (incomplete) :: 26 of 45\nPseudo Genes (internal stop) :: 10 of 45\nPseudo Genes (multiple problems) :: 2 of 45\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_020539009.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF014068.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_009421734.1
COORDINATES: similar to AA sequence:RefSeq:WP_014032334.1
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF001299.0
GO:0016787 - hydrolase activity [Evidence IEA]; GO:0000210 - NAD+ diphosphatase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF023568.2
COORDINATES: protein motif:HMM:NF015022.2
GO:0016758 - hexosyltransferase activity [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO:0030259 - lipid glycosylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008612681.1
COORDINATES: similar to AA sequence:RefSeq:WP_008613842.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_008611912.1
COORDINATES: similar to AA sequence:RefSeq:WP_008611913.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008614586.1
COORDINATES: protein motif:HMM:NF033527.1
COORDINATES: protein motif:HMM:NF025079.2
COORDINATES: protein motif:HMM:NF016876.2
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: protein motif:HMM:TIGR02574.1
COORDINATES: protein motif:HMM:NF013793.2
COORDINATES: protein motif:HMM:TIGR00180.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_008612811.1
GO:0003697 - single-stranded DNA binding [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]; GO:0006260 - DNA replication [Evidence IEA]; GO:0006351 - DNA-templated transcription [Evidence IEA]
COORDINATES: protein motif:HMM:NF014442.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF015935.2
COORDINATES: similar to AA sequence:RefSeq:WP_017498244.1
helix-turn-helix transcriptional regulator
COORDINATES: protein motif:HMM:NF014626.2
SOS response-associated peptidase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010228894.1
COORDINATES: protein motif:HMM:NF012311.2
COORDINATES: similar to AA sequence:RefSeq:WP_008236783.1
translesion error-prone DNA polymerase V autoproteolytic subunit
COORDINATES: similar to AA sequence:RefSeq:WP_015025843.1
COORDINATES: protein motif:HMM:NF013700.2
COORDINATES: protein motif:HMM:NF024390.2
COORDINATES: protein motif:HMM:NF022093.2
COORDINATES: protein motif:HMM:NF024982.2
COORDINATES: protein motif:HMM:NF023922.2
COORDINATES: protein motif:HMM:NF040179.1
COORDINATES: protein motif:HMM:NF014581.2
type IV secretory system conjugative DNA transfer family protein
COORDINATES: protein motif:HMM:NF040155.1
COORDINATES: protein motif:HMM:NF013235.2
COORDINATES: protein motif:HMM:NF027249.2
type II toxin-antitoxin system HicB family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_002676155.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009410167.1
COORDINATES: protein motif:HMM:NF012798.2
COORDINATES: similar to AA sequence:RefSeq:WP_007568430.1
COORDINATES: protein motif:HMM:TIGR02937.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
sigma-70 family RNA polymerase sigma factor
COORDINATES: protein motif:HMM:NF024590.2
COORDINATES: protein motif:HMM:NF015715.2
COORDINATES: similar to AA sequence:RefSeq:WP_004108645.1
COORDINATES: similar to AA sequence:RefSeq:WP_007841139.1
COORDINATES: similar to AA sequence:RefSeq:WP_010608843.1
carboxymuconolactone decarboxylase family protein