Enterobacter asburiae strain 17Nkhm-UP2 plasmid pEAS17Nkhm-UP2-1, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Enterobacter; Enterobacter cloacae complex.
complete genome sequences of blaFRI-positive Enterobacter asburiae str. 17Nkhm-UP2 isolated from river water
Submitted (23-APR-2019) Contact:Tsuyoshi Sekizuka National Institute of Infectious Diseases, Pathogen Genomics Center; 1-23-1 Toyama, Shinjuku-ku, Tokyo 162-8640, Japan
REFSEQ INFORMATION: The reference sequence is identical to\nAP019631.1.\nAnnotated by DFAST v.1.0.8 (https://dfast.nig.ac.jp).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Canu v. 1.4; minimap v. 0.2-r124; racon v.\n 1.1.0; circlator v. 1.5.3; Pilon v. 1.18;\n SPAdes v. 3.11.1; A5-miseq v. 20140604\nGenome Coverage :: 256x\nSequencing Technology :: Sequel; NextSeq500\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/27/2022 02:44:18\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,562\nCDSs (total) :: 4,445\nGenes (coding) :: 4,388\nCDSs (with protein) :: 4,388\nGenes (RNA) :: 117\nrRNAs :: 9, 8, 8 (5S, 16S, 23S)\ncomplete rRNAs :: 9, 8, 8 (5S, 16S, 23S)\ntRNAs :: 83\nncRNAs :: 9\nPseudo Genes (total) :: 57\nCDSs (without protein) :: 57\nPseudo Genes (ambiguous residues) :: 0 of 57\nPseudo Genes (frameshifted) :: 27 of 57\nPseudo Genes (incomplete) :: 35 of 57\nPseudo Genes (internal stop) :: 14 of 57\nPseudo Genes (multiple problems) :: 16 of 57\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_013087098.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007778977.1
COORDINATES: similar to AA sequence:RefSeq:WP_014172383.1
COORDINATES: similar to AA sequence:RefSeq:WP_014172382.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_011998898.1
COORDINATES: similar to AA sequence:RefSeq:WP_011906493.1
COORDINATES: similar to AA sequence:RefSeq:WP_001302622.1
COORDINATES: similar to AA sequence:RefSeq:WP_001495932.1
COORDINATES: similar to AA sequence:RefSeq:WP_014172326.1
COORDINATES: similar to AA sequence:RefSeq:WP_010260829.1
ParA family plasmid-partitioning AAA ATPase
COORDINATES: similar to AA sequence:RefSeq:WP_008502209.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_000627495.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS21-like element ISSen3 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_001531258.1
IS21-like element ISSen3 family helper ATPase IstB
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004118283.1
COORDINATES: similar to AA sequence:RefSeq:YP_005229773.1
COORDINATES: similar to AA sequence:RefSeq:YP_005229772.1
translesion error-prone DNA polymerase V autoproteolytic subunit
COORDINATES: similar to AA sequence:RefSeq:YP_005229768.1
COORDINATES: similar to AA sequence:RefSeq:YP_005229767.1
plasmid partitioning/stability family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013087139.1
COORDINATES: similar to AA sequence:RefSeq:WP_013087140.1
COORDINATES: protein motif:HMM:NF010277.0
COORDINATES: similar to AA sequence:RefSeq:WP_004118124.1
type I toxin-antitoxin system Hok family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_014063967.1
COORDINATES: similar to AA sequence:RefSeq:WP_013087187.1
COORDINATES: similar to AA sequence:RefSeq:WP_014063864.1
lytic transglycosylase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013087191.1
COORDINATES: similar to AA sequence:RefSeq:WP_019843217.1
COORDINATES: similar to AA sequence:RefSeq:WP_013087194.1
type IV conjugative transfer system pilin TraA
COORDINATES: similar to AA sequence:RefSeq:WP_008324958.1
type IV conjugative transfer system protein TraL
COORDINATES: similar to AA sequence:RefSeq:WP_013087196.1
TraE/TraK family type IV conjugative transfer system protein
COORDINATES: similar to AA sequence:RefSeq:WP_015572089.1
type-F conjugative transfer system secretin TraK
COORDINATES: similar to AA sequence:RefSeq:WP_013087198.1
F-type conjugal transfer pilus assembly protein TraB
COORDINATES: similar to AA sequence:RefSeq:WP_013087200.1
COORDINATES: similar to AA sequence:RefSeq:WP_008325086.1
type IV conjugative transfer system lipoprotein TraV
COORDINATES: similar to AA sequence:RefSeq:WP_013087205.1
COORDINATES: similar to AA sequence:RefSeq:WP_013087206.1
COORDINATES: similar to AA sequence:RefSeq:WP_015572098.1
type-F conjugative transfer system protein TrbI
COORDINATES: similar to AA sequence:RefSeq:WP_008325089.1
type-F conjugative transfer system protein TraW
COORDINATES: similar to AA sequence:RefSeq:WP_013087209.1
COORDINATES: similar to AA sequence:RefSeq:WP_015572101.1
COORDINATES: similar to AA sequence:RefSeq:WP_014063883.1
COORDINATES: similar to AA sequence:RefSeq:WP_013087212.1
COORDINATES: similar to AA sequence:RefSeq:WP_013087213.1
COORDINATES: similar to AA sequence:RefSeq:WP_019104690.1
conjugal transfer pilus assembly protein TraU
COORDINATES: similar to AA sequence:RefSeq:WP_015572106.1
type-F conjugative transfer system pilin assembly protein TrbC
COORDINATES: similar to AA sequence:RefSeq:WP_013087216.1
type-F conjugative transfer system mating-pair stabilization protein TraN
COORDINATES: similar to AA sequence:RefSeq:WP_013087217.1
type-F conjugative transfer system pilin assembly protein TraF
COORDINATES: similar to AA sequence:RefSeq:WP_013087218.1
COORDINATES: similar to AA sequence:RefSeq:WP_013087219.1
COORDINATES: similar to AA sequence:RefSeq:WP_008324897.1
type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB
COORDINATES: similar to AA sequence:RefSeq:WP_013087221.1
COORDINATES: similar to AA sequence:RefSeq:WP_019843239.1
conjugal transfer pilus assembly protein TraH
COORDINATES: similar to AA sequence:RefSeq:WP_013087224.1
conjugal transfer mating-pair stabilization protein TraG
COORDINATES: similar to AA sequence:RefSeq:WP_013087225.1
COORDINATES: similar to AA sequence:RefSeq:WP_003018683.1
conjugal transfer complement resistance protein TraT
COORDINATES: similar to AA sequence:RefSeq:WP_015572115.1
COORDINATES: similar to AA sequence:RefSeq:WP_008324886.1
type IV conjugative transfer system coupling protein TraD
COORDINATES: protein motif:HMM:NF018726.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0003678 - DNA helicase activity [Evidence IEA]; GO:0016818 - hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides [Evidence IEA]
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
conjugative transfer relaxase/helicase TraI
COORDINATES: similar to AA sequence:RefSeq:WP_015572118.1
COORDINATES: similar to AA sequence:RefSeq:WP_004642395.1
COORDINATES: similar to AA sequence:RefSeq:WP_000600827.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
nuclear transport factor 2 family protein
COORDINATES: protein motif:HMM:NF015366.2
tripartite tricarboxylate transporter substrate binding protein
COORDINATES: protein motif:HMM:NF014476.2
delta(1)-pyrroline-2-carboxylate reductase family protein
COORDINATES: protein motif:HMM:NF018979.2
tripartite tricarboxylate transporter TctB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006221484.1
tripartite tricarboxylate transporter permease
COORDINATES: similar to AA sequence:RefSeq:WP_016169694.1
COORDINATES: similar to AA sequence:RefSeq:WP_032495017.1
GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_076611198.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF027307.2
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF023351.2
inverse autotransporter beta domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006324998.1
COORDINATES: protein motif:HMM:NF000428.4
carbapenem-hydrolyzing class A beta-lactamase FRI-4
COORDINATES: protein motif:HMM:NF017079.2
COORDINATES: protein motif:HMM:NF012786.2
GO:0015473 - fimbrial usher porin activity [Evidence IEA]
GO:0009297 - pilus assembly [Evidence IEA]
fimbria/pilus outer membrane usher protein
COORDINATES: protein motif:HMM:NF012565.2
GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]
GO:0071555 - cell wall organization [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:NP_459299.1
COORDINATES: protein motif:HMM:NF017581.2
COORDINATES: similar to AA sequence:RefSeq:WP_000998048.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611385.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:NP_708749.1
internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
reverse transcriptase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_076611340.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612066.1
internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010723086.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611384.1
GO:0015074 - DNA integration [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000907654.1
COORDINATES: similar to AA sequence:RefSeq:WP_033635647.1
COORDINATES: protein motif:HMM:NF024120.2
glycosyl hydrolase family 28-related protein
COORDINATES: protein motif:HMM:NF027271.2
COORDINATES: protein motif:HMM:NF012698.2
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
winged helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF012422.2
helix-turn-helix transcriptional regulator
COORDINATES: protein motif:HMM:NF025320.2
FimD/PapC N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_076611553.1
COORDINATES: similar to AA sequence:RefSeq:WP_008786676.1
COORDINATES: similar to AA sequence:RefSeq:WP_086558215.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS3-like element ISEc36 family transposase
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_000509548.1