Serratia marcescens strain KS10 plasmid unnamed.
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Yersiniaceae; Serratia.
Genomic discovery of ecotype-specific features in Serratia marcescens associated with acroporid serratiosis
Submitted (15-MAR-2018) Life Sciences, Texas A&M - Corpus Christi, 6300 Ocean Drive, Corpus Christi, TX 78412, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP027799.1.\nAssembly not circularized.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: MaSuRCA v. MARCH-2018\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 400.0x\nSequencing Technology :: Illumina; PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/21/2023 02:11:00\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,038\nCDSs (total) :: 4,905\nGenes (coding) :: 4,885\nCDSs (with protein) :: 4,885\nGenes (RNA) :: 133\nrRNAs :: 11, 8, 8 (5S, 16S, 23S)\ncomplete rRNAs :: 11, 8, 8 (5S, 16S, 23S)\ntRNAs :: 93\nncRNAs :: 13\nPseudo Genes (total) :: 21\nCDSs (without protein) :: 20\nPseudo Genes (ambiguous residues) :: 0 of 21\nPseudo Genes (frameshifted) :: 7 of 21\nPseudo Genes (incomplete) :: 13 of 21\nPseudo Genes (internal stop) :: 3 of 21\nPseudo Genes (multiple problems) :: 2 of 21\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_004187617.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004187615.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: protein motif:HMM:NF014044.2
COORDINATES: similar to AA sequence:RefSeq:WP_001708424.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
H-NS family nucleoid-associated regulatory protein
COORDINATES: similar to AA sequence:RefSeq:WP_001708425.1
COORDINATES: similar to AA sequence:RefSeq:WP_004150493.1
COORDINATES: similar to AA sequence:RefSeq:WP_001570846.1
COORDINATES: similar to AA sequence:RefSeq:WP_001569515.1
COORDINATES: similar to AA sequence:RefSeq:WP_001569514.1
COORDINATES: similar to AA sequence:RefSeq:WP_001708430.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_001708432.1
COORDINATES: similar to AA sequence:RefSeq:WP_001708435.1
GO:0009007 - site-specific DNA-methyltransferase (adenine-specific) activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
Dam family site-specific DNA-(adenine-N6)-methyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_001708436.1
ankyrin repeat domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_001708437.1
COORDINATES: protein motif:HMM:NF024206.2
COORDINATES: similar to AA sequence:RefSeq:WP_001708439.1
COORDINATES: similar to AA sequence:RefSeq:WP_001708440.1
COORDINATES: similar to AA sequence:RefSeq:WP_001569496.1
COORDINATES: similar to AA sequence:RefSeq:WP_001569497.1
COORDINATES: protein motif:HMM:NF037421.2
COORDINATES: protein motif:HMM:TIGR04346.1
COORDINATES: protein motif:HMM:NF020384.2
COORDINATES: similar to AA sequence:RefSeq:WP_001708380.1
COORDINATES: similar to AA sequence:RefSeq:WP_001708377.1
COORDINATES: similar to AA sequence:RefSeq:WP_001570859.1