Serratia liquefaciens strain S1 plasmid pSl2, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Yersiniaceae; Serratia.
Complete genome sequence of tetracycline-resistant Serratia liquefaciens S1 from mixed salad using Illumina MiSeq and Oxford Nanopore MinION sequencing
Submitted (07-FEB-2020) Microbiology and Biotechnology, Max Rubner-Institut, Hermann-Weigmann-Strasse 1, Kiel 24103, Germany
Submitted (12-AUG-2019) Microbiology and Biotechnology, Max Rubner-Institut, Hermann-Weigmann-Str. 1, Kiel 24103, Germany
REFSEQ INFORMATION: The reference sequence is identical to\nCP048786.1.\nBacteria and source DNA available from mixed salad.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 09-JAN-2020\nAssembly Method :: Unicycler v. 0.4.8\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 147.0x\nSequencing Technology :: Oxford Nanopore MiniION; Illumina MiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/25/2023 02:19:03\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,052\nCDSs (total) :: 4,934\nGenes (coding) :: 4,897\nCDSs (with protein) :: 4,897\nGenes (RNA) :: 118\nrRNAs :: 8, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 8, 7, 7 (5S, 16S, 23S)\ntRNAs :: 85\nncRNAs :: 11\nPseudo Genes (total) :: 37\nCDSs (without protein) :: 37\nPseudo Genes (ambiguous residues) :: 0 of 37\nPseudo Genes (frameshifted) :: 14 of 37\nPseudo Genes (incomplete) :: 25 of 37\nPseudo Genes (internal stop) :: 5 of 37\nPseudo Genes (multiple problems) :: 5 of 37\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_012443152.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_076611102.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012710160.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_001038045.1
tetracycline resistance transcriptional repressor TetR(C)
COORDINATES: similar to AA sequence:RefSeq:WP_001297013.1
tetracycline efflux MFS transporter Tet(C)
COORDINATES: similar to AA sequence:RefSeq:WP_005291943.1
COORDINATES: similar to AA sequence:RefSeq:WP_000015696.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010891053.1
COORDINATES: similar to AA sequence:RefSeq:WP_012443156.1
COORDINATES: similar to AA sequence:RefSeq:WP_016517641.1
COORDINATES: similar to AA sequence:RefSeq:WP_001293214.1