Serratia liquefaciens strain S1 plasmid pSl1, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Yersiniaceae; Serratia.
Complete genome sequence of tetracycline-resistant Serratia liquefaciens S1 from mixed salad using Illumina MiSeq and Oxford Nanopore MinION sequencing
Submitted (07-FEB-2020) Microbiology and Biotechnology, Max Rubner-Institut, Hermann-Weigmann-Strasse 1, Kiel 24103, Germany
Submitted (12-AUG-2019) Microbiology and Biotechnology, Max Rubner-Institut, Hermann-Weigmann-Str. 1, Kiel 24103, Germany
REFSEQ INFORMATION: The reference sequence is identical to\nCP048785.1.\nBacteria and source DNA available from mixed salad.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 09-JAN-2020\nAssembly Method :: Unicycler v. 0.4.8\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 147.0x\nSequencing Technology :: Oxford Nanopore MiniION; Illumina MiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/25/2023 02:19:03\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,052\nCDSs (total) :: 4,934\nGenes (coding) :: 4,897\nCDSs (with protein) :: 4,897\nGenes (RNA) :: 118\nrRNAs :: 8, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 8, 7, 7 (5S, 16S, 23S)\ntRNAs :: 85\nncRNAs :: 11\nPseudo Genes (total) :: 37\nCDSs (without protein) :: 37\nPseudo Genes (ambiguous residues) :: 0 of 37\nPseudo Genes (frameshifted) :: 14 of 37\nPseudo Genes (incomplete) :: 25 of 37\nPseudo Genes (internal stop) :: 5 of 37\nPseudo Genes (multiple problems) :: 5 of 37\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_012561120.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_000583524.1
COORDINATES: similar to AA sequence:RefSeq:YP_005221000.1
GO:0004803 - transposase activity [Evidence IEA]
IS6-like element IS26 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_001493763.1
COORDINATES: similar to AA sequence:RefSeq:WP_001493762.1
COORDINATES: similar to AA sequence:RefSeq:WP_001493761.1
ISKra4-like element ISKpn19 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_017412822.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_001516695.1
quinolone resistance pentapeptide repeat protein QnrS1
COORDINATES: similar to AA sequence:RefSeq:WP_076612175.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_032495017.1
COORDINATES: similar to AA sequence:RefSeq:WP_001749974.1
COORDINATES: similar to AA sequence:RefSeq:WP_000861577.1
COORDINATES: similar to AA sequence:RefSeq:WP_001749972.1
COORDINATES: similar to AA sequence:RefSeq:WP_000999874.1
COORDINATES: similar to AA sequence:RefSeq:WP_000211833.1
COORDINATES: similar to AA sequence:RefSeq:WP_000214483.1
COORDINATES: similar to AA sequence:RefSeq:WP_000129958.1
COORDINATES: similar to AA sequence:RefSeq:WP_000274934.1
COORDINATES: similar to AA sequence:RefSeq:WP_000545925.1
COORDINATES: similar to AA sequence:RefSeq:WP_000932975.1
COORDINATES: similar to AA sequence:RefSeq:WP_000881514.1
antirestriction protein ArdAB regulator ArdR
COORDINATES: similar to AA sequence:RefSeq:WP_000447669.1
COORDINATES: similar to AA sequence:RefSeq:WP_107685442.1
translesion error-prone DNA polymerase V autoproteolytic subunit MucA
COORDINATES: similar to AA sequence:RefSeq:WP_032488541.1
translesion error-prone DNA polymerase V subunit MucB
COORDINATES: similar to AA sequence:RefSeq:WP_012561121.1
COORDINATES: similar to AA sequence:RefSeq:WP_000057569.1
antirestriction protein ArdAB regulator ArdK