Xanthomonas citri pv. citri strain MN12 plasmid pXAC64, complete sequence.
Xanthomonas citri pv. citri (Xanthomonas citri subsp. citri)
Bacteria; Pseudomonadota; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.
Positive selection is the main driving force for evolution of citrus canker-causing Xanthomonas
comparative genomic analysis of citrus canker causing Xanthomonas
Submitted (24-JUL-2014) University of Florida, Citrus Research and Education Center, 700 Experiment Station Road, Lake Alfred, FL 33850, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP008997.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Bio v. 6.0\nReference-guided Assembly :: AE008925.1\nSequencing Technology :: Illumina CLC\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/11/2023 11:05:40\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,507\nCDSs (total) :: 4,408\nGenes (coding) :: 4,241\nCDSs (with protein) :: 4,241\nGenes (RNA) :: 99\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 53\nncRNAs :: 40\nPseudo Genes (total) :: 167\nCDSs (without protein) :: 167\nPseudo Genes (ambiguous residues) :: 0 of 167\nPseudo Genes (frameshifted) :: 97 of 167\nPseudo Genes (incomplete) :: 71 of 167\nPseudo Genes (internal stop) :: 29 of 167\nPseudo Genes (multiple problems) :: 27 of 167\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_017163976.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_005918642.1
COORDINATES: similar to AA sequence:RefSeq:WP_017172391.1
COORDINATES: similar to AA sequence:RefSeq:WP_017170297.1
COORDINATES: similar to AA sequence:RefSeq:WP_011052963.1
GO:0004222 - metalloendopeptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017163981.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014090222.1
COORDINATES: similar to AA sequence:RefSeq:WP_014090221.1
COORDINATES: similar to AA sequence:RefSeq:WP_011052967.1
GO:0004803 - transposase activity [Evidence IEA]
Tn3-like element TnXax1 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_011052968.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017158590.1
COORDINATES: similar to AA sequence:RefSeq:WP_011347479.1
GO:0030254 - protein secretion by the type III secretion system [Evidence IEA]
XopE/AvrPphe family type III secretion system effector
COORDINATES: similar to AA sequence:RefSeq:WP_032488475.1
type III secretion system effector avirulence protein AvrBs3
COORDINATES: similar to AA sequence:RefSeq:WP_011052942.1
COORDINATES: similar to AA sequence:RefSeq:WP_005918227.1
ParC family partition-associated protein
COORDINATES: similar to AA sequence:RefSeq:WP_005918229.1
COORDINATES: similar to AA sequence:RefSeq:WP_005918230.1
COORDINATES: similar to AA sequence:RefSeq:WP_017115804.1
COORDINATES: similar to AA sequence:RefSeq:WP_010368818.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_017154897.1
COORDINATES: similar to AA sequence:RefSeq:WP_017172642.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011052937.1
COORDINATES: similar to AA sequence:RefSeq:WP_007966864.1
COORDINATES: similar to AA sequence:RefSeq:WP_017166603.1
COORDINATES: similar to AA sequence:RefSeq:WP_003159187.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017164032.1
COORDINATES: similar to AA sequence:RefSeq:WP_017158765.1
COORDINATES: similar to AA sequence:RefSeq:WP_017164708.1
type IV secretion system DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017157753.1
COORDINATES: similar to AA sequence:RefSeq:WP_019303585.1
type II toxin-antitoxin system PemK/MazF family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_017158763.1
COORDINATES: similar to AA sequence:RefSeq:WP_003491149.1
COORDINATES: similar to AA sequence:RefSeq:WP_011052981.1
COORDINATES: similar to AA sequence:RefSeq:WP_019303580.1
lytic transglycosylase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008343655.1
GO:0043684 - type IV secretion system complex [Evidence IEA]
GO:0044097 - secretion by the type IV secretion system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005931779.1
COORDINATES: similar to AA sequence:RefSeq:WP_011345603.1
P-type conjugative transfer protein VirB9
COORDINATES: similar to AA sequence:RefSeq:WP_019303576.1
COORDINATES: similar to AA sequence:RefSeq:WP_017167764.1
COORDINATES: similar to AA sequence:RefSeq:WP_015462616.1
COORDINATES: similar to AA sequence:RefSeq:WP_015462617.1
COORDINATES: similar to AA sequence:RefSeq:WP_017167931.1
COORDINATES: similar to AA sequence:RefSeq:WP_005931796.1
COORDINATES: similar to AA sequence:RefSeq:WP_003490875.1
VirB3 family type IV secretion system protein
COORDINATES: similar to AA sequence:RefSeq:WP_017164441.1
COORDINATES: similar to AA sequence:RefSeq:WP_003490957.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611493.1
COORDINATES: similar to AA sequence:RefSeq:WP_015462622.1
COORDINATES: similar to AA sequence:RefSeq:WP_017167887.1
COORDINATES: similar to AA sequence:RefSeq:WP_017167886.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_011052998.1
COORDINATES: similar to AA sequence:RefSeq:WP_015472949.1
COORDINATES: similar to AA sequence:RefSeq:WP_007966096.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005917846.1
COORDINATES: similar to AA sequence:RefSeq:WP_011053002.1
type II toxin-antitoxin system VapC family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_011053003.1
AbrB/MazE/SpoVT family DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017160511.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612016.1
IS3-like element ISXac3 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_076612215.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF015642.2
COORDINATES: similar to AA sequence:RefSeq:WP_011345576.1
Tn3-like element ISXc4 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_003491210.1
GO:0004521 - endoribonuclease activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
putative toxin-antitoxin system toxin component, PIN family
COORDINATES: similar to AA sequence:RefSeq:WP_013105051.1
ribbon-helix-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012477429.1
COORDINATES: similar to AA sequence:RefSeq:WP_005918483.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
helix-turn-helix domain-containing protein