Xanthomonas citri pv. citri strain MN12 plasmid pXAC33, complete sequence.
Xanthomonas citri pv. citri (Xanthomonas citri subsp. citri)
Bacteria; Pseudomonadota; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.
Positive selection is the main driving force for evolution of citrus canker-causing Xanthomonas
comparative genomic analysis of citrus canker causing Xanthomonas
Submitted (24-JUL-2014) University of Florida, Citrus Research and Education Center, 700 Experiment Station Road, Lake Alfred, FL 33850, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP008996.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Bio v. 6.0\nReference-guided Assembly :: AE008924.1\nSequencing Technology :: Illumina CLC\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/11/2023 11:05:40\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,507\nCDSs (total) :: 4,408\nGenes (coding) :: 4,241\nCDSs (with protein) :: 4,241\nGenes (RNA) :: 99\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 53\nncRNAs :: 40\nPseudo Genes (total) :: 167\nCDSs (without protein) :: 167\nPseudo Genes (ambiguous residues) :: 0 of 167\nPseudo Genes (frameshifted) :: 97 of 167\nPseudo Genes (incomplete) :: 71 of 167\nPseudo Genes (internal stop) :: 29 of 167\nPseudo Genes (multiple problems) :: 27 of 167\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_017113814.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_076611493.1
GO:0004803 - transposase activity [Evidence IEA]
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS3-like element ISXac2 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_011052932.1
COORDINATES: similar to AA sequence:RefSeq:WP_019334760.1
AbrB/MazE/SpoVT family DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017172645.1
type II toxin-antitoxin system VapC family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_003159187.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004666662.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611952.1
internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017166603.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007966864.1
COORDINATES: similar to AA sequence:RefSeq:WP_011052937.1
COORDINATES: similar to AA sequence:RefSeq:WP_017172642.1
COORDINATES: similar to AA sequence:RefSeq:WP_017154897.1
COORDINATES: similar to AA sequence:RefSeq:WP_010368818.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_017115804.1
COORDINATES: similar to AA sequence:RefSeq:WP_005918230.1
COORDINATES: similar to AA sequence:RefSeq:WP_005918229.1
COORDINATES: similar to AA sequence:RefSeq:WP_005918227.1
ParC family partition-associated protein
COORDINATES: similar to AA sequence:RefSeq:WP_011052942.1
COORDINATES: similar to AA sequence:RefSeq:WP_032488475.1
GO:0030254 - protein secretion by the type III secretion system [Evidence IEA]
type III secretion system effector avirulence protein AvrBs3
COORDINATES: similar to AA sequence:RefSeq:WP_011052944.1
COORDINATES: similar to AA sequence:RefSeq:WP_015463823.1
COORDINATES: similar to AA sequence:RefSeq:WP_011052947.1
COORDINATES: similar to AA sequence:RefSeq:WP_009109555.1
type II toxin-antitoxin system PemK/MazF family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_011052949.1
COORDINATES: similar to AA sequence:RefSeq:WP_007967594.1
COORDINATES: similar to AA sequence:RefSeq:WP_015060658.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015472939.1
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007962299.1
COORDINATES: similar to AA sequence:RefSeq:WP_011050083.1
IS4-like element ISXac1 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_011345576.1
Tn3-like element ISXc4 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_003491210.1
GO:0004521 - endoribonuclease activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
putative toxin-antitoxin system toxin component, PIN family
COORDINATES: similar to AA sequence:RefSeq:WP_013105051.1
ribbon-helix-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012477429.1
COORDINATES: similar to AA sequence:RefSeq:WP_005934673.1
COORDINATES: similar to AA sequence:RefSeq:WP_017158739.1
COORDINATES: similar to AA sequence:RefSeq:WP_011052960.1