Vitreoscilla stercoraria strain SAG 1488-6 plasmid p2Vster, complete sequence.
type: Entry
definition: Vitreoscilla stercoraria strain SAG 1488-6 plasmid p2Vster, complete sequence.
sequence version: NZ_CP091514.1
sequence date: 2023-04-27
sequence: sequence
division: CON
label: NZ_CP091514.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN24043410
keyword: RefSeq
source: Vitreoscilla stercoraria
organism: Vitreoscilla stercoraria
taxonomy: Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales; Neisseriaceae; Vitreoscilla.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP091514.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 2021\nAssembly Method :: Canu v. 2.2; Flye v. 2.9-b1768; Miniasm\n v. 0.3-r179\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 125X\nSequencing Technology :: Oxford Nanopore; Illumina\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/27/2023 13:52:50\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,623\nCDSs (total) :: 2,507\nGenes (coding) :: 2,467\nCDSs (with protein) :: 2,467\nGenes (RNA) :: 116\nrRNAs :: 7, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 7, 7, 7 (5S, 16S, 23S)\ntRNAs :: 91\nncRNAs :: 4\nPseudo Genes (total) :: 40\nCDSs (without protein) :: 40\nPseudo Genes (ambiguous residues) :: 0 of 40\nPseudo Genes (frameshifted) :: 12 of 40\nPseudo Genes (incomplete) :: 23 of 40\nPseudo Genes (internal stop) :: 8 of 40\nPseudo Genes (multiple problems) :: 3 of 40\nCRISPR Arrays :: 2\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 12828
topology: circular
so has quality: SO_0000988
location: 1..12828
location: region:1-12828:1
RO_0002162: 61

NZ_CP091514
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN24043410
type: BioSample
SIO_000068: biosample

1
title: Evolution of multicellular longitudinally dividing oral cavity symbionts (Neisseriaceae)
author: Nyongesa, S.
author: Weber, P.
author: Bernet, E.
author: Pullido, F.
author: Nieckarz, M.
author: Delaby, M.
author: Nieves, C.
author: Viehboeck, T.
author: Krause, N.
author: Rivera-Millot, A.
author: Nakamura, A.
author: Vischer, N.
author: VanNieuwenhze, M.
author: Brun, Y.
author: Cava, F.
author: Bulgheresi, S.
author: Veyrier, F.
journal: Res Sq (2022)
comments: DOI: 10.21203/rs.3.rs-1200288/v1

2
title: Direct Submission
author: Veyrier, F.J.
journal: Submitted (14-DEC-2021) Microbiology, INRS-Centre Armand-Frappier Sante Biotechnologie, 531 Bd des Prairies, Laval, Quebec H7V1B7, Canada

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12828:1
position: 12828
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-12828:1:source
so part of: sequence
organism: Vitreoscilla stercoraria
mol type: genomic DNA
strain: SAG 1488-6
isolation source: Dung
host: Bos taurus
culture collection: DSM:513
type material: type strain of Vitreoscilla stercoraria
plasmid: p2Vster
collection date: 1990

61
type: Taxonomy
SIO_000068: taxonomy

LVJ81_RS13030
type: Gene
subclass of: SO_0000704
RO_0002162: 61
locus tag: LVJ81_RS13030
old locus tag: LVJ81_13030
so part of: sequence
location: 16..576
location: region:16-576:1
so has part: feature:16-576:1:exon
subclass of: SO_0000010

position:16:1
position: 16
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:576:1
position: 576
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16-576:1:exon

LVJ81_RS13030
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61
locus tag: LVJ81_RS13030
old locus tag: LVJ81_13030
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004636773.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO process: GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MKGQIIGYVRVSTVDQNIERQLEQLQHCDELFIDKVSGKDVERPKLQEMMRHIRRGDIIEVTSIDRLARNNIDLQNLVKEITAKGVVIKFLKEGLTFGAEGNDNAISKMMLTMLAAISEFERALIRERQREGIALAKAKGKYKGRSPKLTPEQVEQLKQRIAAGESKSSVAKAFGITRMTVYAYLK
SIO_010081: LVJ81_RS13030
subclass of: SO_0000673
so part of: LVJ81_RS13030
location: 16..576
location: region:16-576:1
so has part: feature:16-576:1:exon

WP_026353726.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16-576:1:exon

LVJ81_RS13035
type: Gene
subclass of: SO_0000704
RO_0002162: 61
locus tag: LVJ81_RS13035
old locus tag: LVJ81_13035
so part of: sequence
location: 664..918
location: region:664-918:1
so has part: feature:664-918:1:exon
subclass of: SO_0000010

position:664:1
position: 664
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:918:1
position: 918
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:664-918:1:exon

LVJ81_RS13035
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61
locus tag: LVJ81_RS13035
old locus tag: LVJ81_13035
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012812713.1
GO function: GO:0003729 - mRNA binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system HicA family toxin
translation: MKRKHQKTLELIFHRPVSGSIKWTEIEALFIELGANVQEREGSRIAVVLFGQVKVFHRPHPSPDTDKGAVASVRKWLDENGVRP
SIO_010081: LVJ81_RS13035
subclass of: SO_0000673
so part of: LVJ81_RS13035
location: 664..918
location: region:664-918:1
so has part: feature:664-918:1:exon

WP_019959540.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:664-918:1:exon

LVJ81_RS13040
type: Gene
subclass of: SO_0000704
RO_0002162: 61
locus tag: LVJ81_RS13040
old locus tag: LVJ81_13040
so part of: sequence
location: 915..1250
location: region:915-1250:1
so has part: feature:915-1250:1:exon
subclass of: SO_0000010

position:915:1
position: 915
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1250:1
position: 1250
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:915-1250:1:exon

LVJ81_RS13040
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61
locus tag: LVJ81_RS13040
old locus tag: LVJ81_13040
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009116033.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system HicB family antitoxin
translation: MINTMIINGYKAVIAYDSEIELFRGEFIGLNGGADFYAADVESLRREGAESLKVFLEVCKENGIEPKKQYSGRFNVRINPKLHEDAMAAAIAQGISLNELVSRAIATAAHH
SIO_010081: LVJ81_RS13040
subclass of: SO_0000673
so part of: LVJ81_RS13040
location: 915..1250
location: region:915-1250:1
so has part: feature:915-1250:1:exon

WP_019959539.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:915-1250:1:exon

LVJ81_RS13045
type: Gene
subclass of: SO_0000704
RO_0002162: 61
gene: leuA
locus tag: LVJ81_RS13045
old locus tag: LVJ81_13045
so part of: sequence
location: 1607..3280
location: region:1607-3280:1
so has part: feature:1607-3280:1:exon
subclass of: SO_0000010

position:1607:1
position: 1607
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3280:1
position: 3280
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1607-3280:1:exon

LVJ81_RS13045
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61
gene: leuA
locus tag: LVJ81_RS13045
old locus tag: LVJ81_13045
EC number: 2.3.3.13
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006178152.1
GO function: GO:0003852 - 2-isopropylmalate synthase activity [Evidence IEA]
GO process: GO:0009098 - leucine biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: 2-isopropylmalate synthase
translation: MLNSPATKYQPFPTVIKTKRHWPTQVLNKPPRWCSTDLRDGNQALANPMDGASKAEYFQCLIEIGFKEIEVAFPAASDTDYSFVRYLIEQNKIPENVTIQVITQARPELINTTMTSLLGVKKAIVHVYNATAPAFREQVFQMSQKEVIELAIAATTQIKEFCLQHPETHWTLEYSPETFCMTELAFSVEICRAVMDVWKPNAQYPLILNLPATVEVNTPNVYADQIEYMIETLQPSEHTCISVHPHNDRGTGVAAAELAQLAGASRVEGCLFGNGERTGNVDLVTLAMNLYTQGIHPNLNFSNMSKVVSMAEKMTALPVHPRHPYAGELVFTAFSGSHQDAIKKGFQWRKEHESELWNVPYLPLDPKDIGCSYEAVIRVNSQSGKSGASWILQQNHGLILPRYLQQDFSHHIQKHTDSHGKEISMAEIWSLFREQYGLKIKPKLSLSNFTFDAESGTIKANLLQDERQISLLGHGKGLISAWINALTQLFDGEITVLHYDEHSLGHSTDSQAVAYVGCQFNQSEVFYGVAIEKDISKAALQAILNSLITVYPQLSYQ
SIO_010081: LVJ81_RS13045
subclass of: SO_0000673
so part of: LVJ81_RS13045
location: 1607..3280
location: region:1607-3280:1
so has part: feature:1607-3280:1:exon

WP_019959538.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1607-3280:1:exon

LVJ81_RS13050
type: Gene
subclass of: SO_0000704
RO_0002162: 61
locus tag: LVJ81_RS13050
old locus tag: LVJ81_13050
so part of: sequence
location: complement(3281..4042)
location: region:3281-4042:-1
so has part: feature:3281-4042:-1:exon
subclass of: SO_0000010

position:3281:-1
position: 3281
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4042:-1
position: 4042
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3281-4042:-1:exon

LVJ81_RS13050
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61
locus tag: LVJ81_RS13050
old locus tag: LVJ81_13050
inference: COORDINATES: protein motif:HMM:NF014376.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix transcriptional regulator
translation: MIFKNEIPNQVIHVYSAKYPSKHVEEWHHHSCYQLIYAISGLIRVHTNDAMWILPSTYAVWMPPYIEHRLEILTDIEIRSVFVQPLARADLINYPLTSQVSPLLRELIINAATFNNNVLSHTREERVIELILDELRLLKKEPLYVPLPRDGKLKSACESILNKLYYPWQLADPANIMSVNERTITRYFRQETGLSFQEWLRRQRLLTGLSYLIKKHSITETALKVGYDNPSAFATMFKSYMGCTPSEYQLNAS
SIO_010081: LVJ81_RS13050
subclass of: SO_0000673
so part of: LVJ81_RS13050
location: complement(3281..4042)
location: region:3281-4042:-1
so has part: feature:3281-4042:-1:exon

WP_244802750.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3281-4042:-1:exon

LVJ81_RS13055
type: Gene
subclass of: SO_0000704
RO_0002162: 61
locus tag: LVJ81_RS13055
old locus tag: LVJ81_13055
so part of: sequence
location: 4263..4457
location: region:4263-4457:1
so has part: feature:4263-4457:1:exon
subclass of: SO_0000010

position:4263:1
position: 4263
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4457:1
position: 4457
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4263-4457:1:exon

LVJ81_RS13055
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61
locus tag: LVJ81_RS13055
old locus tag: LVJ81_13055
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNKYRIKSAKGYWLERGCGYTQDESKAAIFTLDDMRSFNLDQCTLLRVNDYELQTSVTVNDNNE
SIO_010081: LVJ81_RS13055
subclass of: SO_0000673
so part of: LVJ81_RS13055
location: 4263..4457
location: region:4263-4457:1
so has part: feature:4263-4457:1:exon

WP_019959536.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4263-4457:1:exon

LVJ81_RS13060
type: Gene
subclass of: SO_0000704
RO_0002162: 61
locus tag: LVJ81_RS13060
old locus tag: LVJ81_13060
so part of: sequence
location: complement(4884..5348)
location: region:4884-5348:-1
so has part: feature:4884-5348:-1:exon
subclass of: SO_0000010

position:4884:-1
position: 4884
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5348:-1
position: 5348
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4884-5348:-1:exon

LVJ81_RS13060
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61
locus tag: LVJ81_RS13060
old locus tag: LVJ81_13060
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTVNYKEANRELKNQLINKVNNNELNTFITLNPNKNCSLEKLKFAVGEFNKMVKGRIFQSETFINQYGGYGFVEYGNDLEIPHVHALVFVPEKRLEYFHRKAGKIWKACHKQGSFNVQHIDASTSERIVDYVFKEADKEFCVRHGNPLDNIIPF
SIO_010081: LVJ81_RS13060
subclass of: SO_0000673
so part of: LVJ81_RS13060
location: complement(4884..5348)
location: region:4884-5348:-1
so has part: feature:4884-5348:-1:exon

WP_019959535.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4884-5348:-1:exon

LVJ81_RS13065
type: Gene
subclass of: SO_0000704
RO_0002162: 61
locus tag: LVJ81_RS13065
old locus tag: LVJ81_13065
so part of: sequence
location: complement(5767..6054)
location: region:5767-6054:-1
so has part: feature:5767-6054:-1:exon
subclass of: SO_0000010

position:5767:-1
position: 5767
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6054:-1
position: 6054
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5767-6054:-1:exon

LVJ81_RS13065
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61
locus tag: LVJ81_RS13065
old locus tag: LVJ81_13065
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
GO function: GO:0003677 - DNA binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: helix-turn-helix domain-containing protein
translation: MRMNVFNEPLPHSEIKGIAKSVANWTWKHMRHDTEAFKKRQSARGKLSGKARLSKANNLKTSAIVLREQGNSITAIAQALQVSVRSVNSWLNSSK
SIO_010081: LVJ81_RS13065
subclass of: SO_0000673
so part of: LVJ81_RS13065
location: complement(5767..6054)
location: region:5767-6054:-1
so has part: feature:5767-6054:-1:exon

WP_019959534.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5767-6054:-1:exon

LVJ81_RS13070
type: Gene
subclass of: SO_0000704
RO_0002162: 61
locus tag: LVJ81_RS13070
old locus tag: LVJ81_13070
pseudo: true
so part of: sequence
location: complement(6141..6699)
location: region:6141-6699:-1
so has part: feature:6141-6699:-1:exon
subclass of: SO_0000010

position:6141:-1
position: 6141
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6699:-1
position: 6699
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6141-6699:-1:exon

LVJ81_RS13070
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61
locus tag: LVJ81_RS13070
old locus tag: LVJ81_13070
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004176201.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO process: GO:0006310 - DNA recombination [Evidence IEA]
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: recombinase family protein
SIO_010081: LVJ81_RS13070
subclass of: SO_0000673
so part of: LVJ81_RS13070
location: complement(6141..6699)
location: region:6141-6699:-1
so has part: feature:6141-6699:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6141-6699:-1:exon

LVJ81_RS13075
type: Gene
subclass of: SO_0000704
RO_0002162: 61
locus tag: LVJ81_RS13075
old locus tag: LVJ81_13075
so part of: sequence
location: 7044..10016
location: region:7044-10016:1
so has part: feature:7044-10016:1:exon
subclass of: SO_0000010

position:7044:1
position: 7044
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10016:1
position: 10016
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7044-10016:1:exon

LVJ81_RS13075
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61
locus tag: LVJ81_RS13075
old locus tag: LVJ81_13075
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003117273.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Tn3 family transposase
translation: MPRRSILTAFECENLLALPDTKEELIQLYTFNDTDLARIRQHRGAANRLGFAVQLCYMRYPGIVLAANTAPDTTLLRIVTDQLKLSGDIWNDYSQRPETRREHLLELQSIYGFQSFTTFHHYRDAVYGLSNLAWQTDKGIVLARELVDQLRNRNILLPAINVIDRICAEAITRANRHINTILTDSLTRCHRQQLDELLKLKDGSKMTWLAWLRQSPAKPNSRHMLEHIQRLKVWQGLNLPIGIERQVHQNRLLKIAREGAKMTPADLAKFEPKRRYATLVALAIESIATVTDEIIDLHDRIIGKLFNVAKNKHQQQFQVNGKAINDKVRLYGRIGQALIEAKKNGGDPFAAIEMLMPWHTFTASVTEAQILARPADFDFLHHIGEGYNTLRRYSPQFLDVLKLQAAPAAKGLLNAIDVLRDMNNNSVRKMPSDAPTAFIKRRWTKLVLTDIGIDRRYYELCVLSELKNALRSGDIWVQGSRQFKNFNEYLVPVDRFVALKQAKELSLNVDTDCDQYLSERLQLLGEQLATVNCMAMANALPDAIITNTSGLKIKPLDTAVPNAAQTLIDQTALILPRLKITDLLMEVDEWTGFTRHFTHLKSSDIVKDKTLLMTTILADAINLGLTKMAESCPGTTYAKLSWLQAWHIRDETYSEALAELVNAQFRQPFAQNWGEGTTSSSDGQNFRTGSKARSTGHINPKYGSNPGRIFYTHISDQYAPFSTKVISVGVRDSTYVLDGLLNHESDLRIEEHYTDTAGFTDHVFGLMHLLGFRFAPRIRDLSDTKLFIIKGNAAYDALKPMISSDRLNIKAIRAHWDEILRLVTSIKQGTVTASLMLRKLSSYPRQNGLAVALRELGRIERTLFILNWLKSVELRRSVQAGLNKGEARNALARAVFFNRQGEIRDRSFEQQCYCASGLNLVTAAIVLWNTVYLERAVNALRSHGQNIDDTLLQYLSPLGWEHINLTGDYLWHSNKIGVGKFRPLKQLPKP
SIO_010081: LVJ81_RS13075
subclass of: SO_0000673
so part of: LVJ81_RS13075
location: 7044..10016
location: region:7044-10016:1
so has part: feature:7044-10016:1:exon

WP_244802729.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7044-10016:1:exon

LVJ81_RS13080
type: Gene
subclass of: SO_0000704
RO_0002162: 61
locus tag: LVJ81_RS13080
old locus tag: LVJ81_13080
so part of: sequence
location: complement(10013..10459)
location: region:10013-10459:-1
so has part: feature:10013-10459:-1:exon
subclass of: SO_0000010

position:10013:-1
position: 10013
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10459:-1
position: 10459
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10013-10459:-1:exon

LVJ81_RS13080
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61
locus tag: LVJ81_RS13080
old locus tag: LVJ81_13080
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTGLTHYKQMNAALKQDIKDRIHTGEINTFLTLNPNKHCHNRNKLECLFSKYDKWIRGRVLKNKLSEQYYGYAFIEQGNDYDVPHLHALVHIPELYLEYYQEKAARIWKTIHPFGSSAIEQINPETVDTIVDYFFKEGSLQKTEFKVR
SIO_010081: LVJ81_RS13080
subclass of: SO_0000673
so part of: LVJ81_RS13080
location: complement(10013..10459)
location: region:10013-10459:-1
so has part: feature:10013-10459:-1:exon

WP_244802748.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10013-10459:-1:exon

LVJ81_RS13085
type: Gene
subclass of: SO_0000704
RO_0002162: 61
locus tag: LVJ81_RS13085
old locus tag: LVJ81_13085
so part of: sequence
location: complement(10802..11065)
location: region:10802-11065:-1
so has part: feature:10802-11065:-1:exon
subclass of: SO_0000010

position:10802:-1
position: 10802
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11065:-1
position: 11065
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10802-11065:-1:exon

LVJ81_RS13085
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61
locus tag: LVJ81_RS13085
old locus tag: LVJ81_13085
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MENIIRVFASNNSQYQISACKVGLWFVVCGLWFVVCGLWFVVCGLWFVVCGLWFVVCGLWFVVCGLWFVVCGLWFVVCGLWFVSFAF
SIO_010081: LVJ81_RS13085
subclass of: SO_0000673
so part of: LVJ81_RS13085
location: complement(10802..11065)
location: region:10802-11065:-1
so has part: feature:10802-11065:-1:exon

WP_244802749.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10802-11065:-1:exon

LVJ81_RS13090
type: Gene
subclass of: SO_0000704
RO_0002162: 61
locus tag: LVJ81_RS13090
old locus tag: LVJ81_13090
so part of: sequence
location: complement(11053..12018)
location: region:11053-12018:-1
so has part: feature:11053-12018:-1:exon
subclass of: SO_0000010

position:11053:-1
position: 11053
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12018:-1
position: 12018
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11053-12018:-1:exon

LVJ81_RS13090
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61
locus tag: LVJ81_RS13090
old locus tag: LVJ81_13090
inference: COORDINATES: protein motif:HMM:NF015076.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiation protein
translation: MDKLYPLAFNQATLLEILEQISQSQSLPRKPYCSDNLSTGIYPRLQRIAITKRYIQLNPPSMQHWLVFDIDRPNSAYAWYDANLPTPFAVVVNESNTHCHIIYRLESPVCTSDLAHEKPLRYLDAIQRAYTAKLQADVNYSGLIAKNPFSQNHWRVIYCAVNALYTLDYLAEWVDLTQVPKRCKNASEAVALGRNCYLFDSLRKVAYKSIREYRTGKVDTWRSHILDQAMSMNVFSEPLPHSEIKGIAKSVANWTWKKMRHDTEAFKQRQSVRGKKGGIAKGAKNHNKRVSAMVLKEQGLPLTEIARSLNLTVMTLRRWKI
SIO_010081: LVJ81_RS13090
subclass of: SO_0000673
so part of: LVJ81_RS13090
location: complement(11053..12018)
location: region:11053-12018:-1
so has part: feature:11053-12018:-1:exon

WP_081619601.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11053-12018:-1:exon

LVJ81_RS13095
type: Gene
subclass of: SO_0000704
RO_0002162: 61
locus tag: LVJ81_RS13095
old locus tag: LVJ81_13095
so part of: sequence
location: 12195..12644
location: region:12195-12644:1
so has part: feature:12195-12644:1:exon
subclass of: SO_0000010

position:12195:1
position: 12195
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12644:1
position: 12644
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12195-12644:1:exon

LVJ81_RS13095
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61
locus tag: LVJ81_RS13095
old locus tag: LVJ81_13095
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002642251.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSKYIISFDLNNEILSQEYHVSSYNNAYANIKTILEKHGFKNLQGSVYIGNENVSEAHGTIAIQEITARYNWFSKAVSDIKFYRIESDLNAQFIVDGVEHAKRAFFNQIQLIKHNLAASGLTEEQIENIIGQQVFQLPNLVDIPLNKIK
SIO_010081: LVJ81_RS13095
subclass of: SO_0000673
so part of: LVJ81_RS13095
location: 12195..12644
location: region:12195-12644:1
so has part: feature:12195-12644:1:exon

WP_019959552.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12195-12644:1:exon