Vitreoscilla stercoraria strain SAG 1488-6 plasmid p1Vster, complete sequence.
type: Entry
definition: Vitreoscilla stercoraria strain SAG 1488-6 plasmid p1Vster, complete sequence.
sequence version: NZ_CP091513.1
sequence date: 2023-04-27
sequence: sequence
division: CON
label: NZ_CP091513.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN24043410
keyword: RefSeq
source: Vitreoscilla stercoraria
organism: Vitreoscilla stercoraria
taxonomy: Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales; Neisseriaceae; Vitreoscilla.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP091513.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 2021\nAssembly Method :: Canu v. 2.2; Flye v. 2.9-b1768; Miniasm\n v. 0.3-r179\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 125X\nSequencing Technology :: Oxford Nanopore; Illumina\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/27/2023 13:52:50\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,623\nCDSs (total) :: 2,507\nGenes (coding) :: 2,467\nCDSs (with protein) :: 2,467\nGenes (RNA) :: 116\nrRNAs :: 7, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 7, 7, 7 (5S, 16S, 23S)\ntRNAs :: 91\nncRNAs :: 4\nPseudo Genes (total) :: 40\nCDSs (without protein) :: 40\nPseudo Genes (ambiguous residues) :: 0 of 40\nPseudo Genes (frameshifted) :: 12 of 40\nPseudo Genes (incomplete) :: 23 of 40\nPseudo Genes (internal stop) :: 8 of 40\nPseudo Genes (multiple problems) :: 3 of 40\nCRISPR Arrays :: 2\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 17740
topology: circular
so has quality: SO_0000988
location: 1..17740
location: region:1-17740:1
RO_0002162: 61

NZ_CP091513
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN24043410
type: BioSample
SIO_000068: biosample

1
title: Evolution of multicellular longitudinally dividing oral cavity symbionts (Neisseriaceae)
author: Nyongesa, S.
author: Weber, P.
author: Bernet, E.
author: Pullido, F.
author: Nieckarz, M.
author: Delaby, M.
author: Nieves, C.
author: Viehboeck, T.
author: Krause, N.
author: Rivera-Millot, A.
author: Nakamura, A.
author: Vischer, N.
author: VanNieuwenhze, M.
author: Brun, Y.
author: Cava, F.
author: Bulgheresi, S.
author: Veyrier, F.
journal: Res Sq (2022)
comments: DOI: 10.21203/rs.3.rs-1200288/v1

2
title: Direct Submission
author: Veyrier, F.J.
journal: Submitted (14-DEC-2021) Microbiology, INRS-Centre Armand-Frappier Sante Biotechnologie, 531 Bd des Prairies, Laval, Quebec H7V1B7, Canada

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17740:1
position: 17740
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-17740:1:source
so part of: sequence
organism: Vitreoscilla stercoraria
mol type: genomic DNA
strain: SAG 1488-6
isolation source: Dung
host: Bos taurus
culture collection: DSM:513
type material: type strain of Vitreoscilla stercoraria
plasmid: p1Vster
collection date: 1990

61
type: Taxonomy
SIO_000068: taxonomy

LVJ81_RS12910
type: Gene
subclass of: SO_0000704
RO_0002162: 61
locus tag: LVJ81_RS12910
old locus tag: LVJ81_12910
so part of: sequence
location: 1..1236
location: region:1-1236:1
so has part: feature:1-1236:1:exon
subclass of: SO_0000010

position:1236:1
position: 1236
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-1236:1:exon

LVJ81_RS12910
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61
locus tag: LVJ81_RS12910
old locus tag: LVJ81_12910
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005108961.1
GO function: GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DNA cytosine methyltransferase
translation: MLKLGTVFSGIGAIEHALSRLSIEYEISFACDNGNIELNLEKDEIEKNLLNLSSFRDKKNYIDELYLRNKKKNFVEESYKANYNISQEHFHYDVRFLDGHQYRNEIDLLVGGSPCQSFSMVGKRGGFEDTRGTLFYEFARLVNEIRPKVFIYENVKGVLSHDGGNTWTIMQNVFSDLGYKWYSQVLNSKNYGIPQNRERLFVVGFLDQTAEFDFPSPQILTKTMQDFLLENTPEKYYLGDKGIDFVTSAKNLNKQYTQINGSIGLCQKANQQFNWHGDFIFEELPNPIDEKYFLSEKLVNYVMATGTKGFYTRPKIDLEIARPLLATMTKMHRAGVDNYVTTQGRIRKLTPRECLRLMGFCDSFKIVVSDTQAYRQAGNSIVVDVLMSIVKQINLSVDLSKTIEKKQLQLI
SIO_010081: LVJ81_RS12910
subclass of: SO_0000673
so part of: LVJ81_RS12910
location: 1..1236
location: region:1-1236:1
so has part: feature:1-1236:1:exon

WP_019959516.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1-1236:1:exon

LVJ81_RS12915
type: Gene
subclass of: SO_0000704
RO_0002162: 61
locus tag: LVJ81_RS12915
old locus tag: LVJ81_12915
so part of: sequence
location: 1299..2759
location: region:1299-2759:1
so has part: feature:1299-2759:1:exon
subclass of: SO_0000010

position:1299:1
position: 1299
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2759:1
position: 2759
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1299-2759:1:exon

LVJ81_RS12915
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61
locus tag: LVJ81_RS12915
old locus tag: LVJ81_12915
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005108960.1
GO function: GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: AAA family ATPase
translation: MNISTNISRPLVDSFVHRKVKLLKTKGSGEAKFHIGSAENRGEFDSFFNSYADENIYYFKKKNLLEFLLKEKFEFYYQFINQYKEVSPKYWDSVYDEVLVLPEEVTFKLTSFNDGKRYYIRSDSGDIFNDLVRRISLPLISILTIEKEDKNKFLFTLDVDFNKSSQSVEEETRVSVNKGYNKIIYGAPGAGKSASVSKIVSEHYIRTVFHPETQYSDFIGCLKPHKDKSGSITYSFRKGPFIQILEQALLDKQNHYFLVIEELNRANTAAVFGEIFQLLDRDDEGKSEYPILIQDEDLYDALEETLGSEHKFIVKRQLMIPSNLSIIATMNSSDQAVFPLDTAFKRRWIFEYLPIDFTNCATGEIPIHHAVLPNVEWKTLAQTINAVLVQLKVVEDKLIGPWFIKDSDLVEDQAEQTFIGKVCSYLWDDALKYKNKDEIFKSDIHGYGELYQRYSNQKPIFSDKFMEILQITQDVDTDTSNKTEAE
SIO_010081: LVJ81_RS12915
subclass of: SO_0000673
so part of: LVJ81_RS12915
location: 1299..2759
location: region:1299-2759:1
so has part: feature:1299-2759:1:exon

WP_019959515.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1299-2759:1:exon

LVJ81_RS12920
type: Gene
subclass of: SO_0000704
RO_0002162: 61
locus tag: LVJ81_RS12920
old locus tag: LVJ81_12920
so part of: sequence
location: 2759..4030
location: region:2759-4030:1
so has part: feature:2759-4030:1:exon
subclass of: SO_0000010

position:4030:1
position: 4030
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2759-4030:1:exon

LVJ81_RS12920
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61
locus tag: LVJ81_RS12920
old locus tag: LVJ81_12920
EC number: 3.1.21.-
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005108959.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: LlaJI family restriction endonuclease
translation: MEYRFFEDKEFIDSKKIPDYVIDKLVSVGGLDVVDQGRKITFCGVIISEGCTYCFAPSKSDSKKIESIGNLIRVIHAYKDSIDSSLLAFDEDEQGEVIEEVSLTDIFEIIDLYFNVGILRSKTHTYSEKGRTNWSKTVNREFPVFTSDNVPIYFDLHKYPVSIYQDDLISSIHCEIILDILTKFHWLDERFNFVSKNQLSEKKLFNELDINQKIYILNQRLHSTFVSLEIRTLQLLIRYLEKIHESGSNNIVMGVRKFHYVWEFLLKNIFHDVDFKINSLLPIPQYNFADASRPTESSSQKGMRLDIFIKTKKTCWVVDSKYYTATGARDSPGWPDLVKQFFYAKAIKLIYPEFETITNIFIFPGITNPLSTIEMVYRKEIEDKEKLFKLTEDFIPIKCLYLDPNDVIERYLKSEKVHITDYV
SIO_010081: LVJ81_RS12920
subclass of: SO_0000673
so part of: LVJ81_RS12920
location: 2759..4030
location: region:2759-4030:1
so has part: feature:2759-4030:1:exon

WP_019959514.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2759-4030:1:exon

LVJ81_RS12925
type: Gene
subclass of: SO_0000704
RO_0002162: 61
locus tag: LVJ81_RS12925
old locus tag: LVJ81_12925
pseudo: true
so part of: sequence
location: 4264..>4488
location: region:4264-4488:1
so has part: feature:4264-4488:1:exon
subclass of: SO_0000010

position:4264:1
position: 4264
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4488:1
position: 4488
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4264-4488:1:exon

LVJ81_RS12925
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61
locus tag: LVJ81_RS12925
old locus tag: LVJ81_12925
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005267816.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO process: GO:0006310 - DNA recombination [Evidence IEA]
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: recombinase family protein
SIO_010081: LVJ81_RS12925
subclass of: SO_0000673
so part of: LVJ81_RS12925
location: 4264..>4488
location: region:4264-4488:1
so has part: feature:4264-4488:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4264-4488:1:exon

LVJ81_RS12930
type: Gene
subclass of: SO_0000704
RO_0002162: 61
locus tag: LVJ81_RS12930
old locus tag: LVJ81_12930
pseudo: true
so part of: sequence
location: complement(4521..>4796)
location: region:4521-4796:-1
so has part: feature:4521-4796:-1:exon
subclass of: SO_0000010

position:4521:-1
position: 4521
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4796:-1
position: 4796
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4521-4796:-1:exon

LVJ81_RS12930
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61
locus tag: LVJ81_RS12930
old locus tag: LVJ81_12930
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011785204.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO process: GO:0006313 - transposition, DNA-mediated [Evidence IEA]
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: transposase
SIO_010081: LVJ81_RS12930
subclass of: SO_0000673
so part of: LVJ81_RS12930
location: complement(4521..>4796)
location: region:4521-4796:-1
so has part: feature:4521-4796:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4521-4796:-1:exon

LVJ81_RS12935
type: Gene
subclass of: SO_0000704
RO_0002162: 61
gene: istB
locus tag: LVJ81_RS12935
old locus tag: LVJ81_12935
so part of: sequence
location: complement(4865..5641)
location: region:4865-5641:-1
so has part: feature:4865-5641:-1:exon
subclass of: SO_0000010

position:4865:-1
position: 4865
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5641:-1
position: 5641
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4865-5641:-1:exon

LVJ81_RS12935
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61
gene: istB
locus tag: LVJ81_RS12935
old locus tag: LVJ81_12935
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006954076.1
GO function: GO:0005524 - ATP binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS21-like element helper ATPase IstB
translation: MNLQHERIADACRQLGLHVISEAWPSLAQANIEQDKGYGDFIEHLLAEELKSKHHRTRTALLKFAGFPCIKTLEEYDFKFASSAPKALLTELAGLSFVHRKENVVLLGPSGVGKTHLALALGYRAVMAGIKVRFITAADLMIQLAAANQQGKLKSYLQRGILAPKLLIIDEIGYLPFGRDEANLFFNVIAKRYENGSIVLTSNLPFSQWAGTFADDATLTAAMLDRLLHHCHVAQISGESYRLKNKKKAGVLPSIGDI
SIO_010081: LVJ81_RS12935
subclass of: SO_0000673
so part of: LVJ81_RS12935
location: complement(4865..5641)
location: region:4865-5641:-1
so has part: feature:4865-5641:-1:exon

WP_019959512.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4865-5641:-1:exon

LVJ81_RS12940
type: Gene
subclass of: SO_0000704
RO_0002162: 61
gene: istA
locus tag: LVJ81_RS12940
old locus tag: LVJ81_12940
pseudo: true
so part of: sequence
location: complement(5638..6653)
location: region:5638-6653:-1
so has part: feature:5638-6653:-1:exon
subclass of: SO_0000010

position:5638:-1
position: 5638
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6653:-1
position: 6653
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5638-6653:-1:exon

LVJ81_RS12940
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61
gene: istA
locus tag: LVJ81_RS12940
old locus tag: LVJ81_12940
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002551322.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: IS21 family transposase
SIO_010081: LVJ81_RS12940
subclass of: SO_0000673
so part of: LVJ81_RS12940
location: complement(5638..6653)
location: region:5638-6653:-1
so has part: feature:5638-6653:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5638-6653:-1:exon

LVJ81_RS12945
type: Gene
subclass of: SO_0000704
RO_0002162: 61
locus tag: LVJ81_RS12945
old locus tag: LVJ81_12945
pseudo: true
so part of: sequence
location: complement(<6744..7724)
location: region:6744-7724:-1
so has part: feature:6744-7724:-1:exon
subclass of: SO_0000010

position:6744:-1
position: 6744
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:7724:-1
position: 7724
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6744-7724:-1:exon

LVJ81_RS12945
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61
locus tag: LVJ81_RS12945
old locus tag: LVJ81_12945
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012628135.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: IS256 family transposase
SIO_010081: LVJ81_RS12945
subclass of: SO_0000673
so part of: LVJ81_RS12945
location: complement(<6744..7724)
location: region:6744-7724:-1
so has part: feature:6744-7724:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6744-7724:-1:exon

LVJ81_RS12950
type: Gene
subclass of: SO_0000704
RO_0002162: 61
locus tag: LVJ81_RS12950
old locus tag: LVJ81_12950
pseudo: true
so part of: sequence
location: <7825..8202
location: region:7825-8202:1
so has part: feature:7825-8202:1:exon
subclass of: SO_0000010

position:7825:1
position: 7825
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:8202:1
position: 8202
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7825-8202:1:exon

LVJ81_RS12950
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61
locus tag: LVJ81_RS12950
old locus tag: LVJ81_12950
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004889724.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO process: GO:0006310 - DNA recombination [Evidence IEA]
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: helix-turn-helix domain-containing protein
SIO_010081: LVJ81_RS12950
subclass of: SO_0000673
so part of: LVJ81_RS12950
location: <7825..8202
location: region:7825-8202:1
so has part: feature:7825-8202:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:7825-8202:1:exon

LVJ81_RS12955
type: Gene
subclass of: SO_0000704
RO_0002162: 61
locus tag: LVJ81_RS12955
old locus tag: LVJ81_12955
pseudo: true
so part of: sequence
location: 8505..>8819
location: region:8505-8819:1
so has part: feature:8505-8819:1:exon
subclass of: SO_0000010

position:8505:1
position: 8505
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8819:1
position: 8819
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8505-8819:1:exon

LVJ81_RS12955
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61
locus tag: LVJ81_RS12955
old locus tag: LVJ81_12955
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008291137.1
GO function: GO:0005524 - ATP binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: DEAD/DEAH box helicase
SIO_010081: LVJ81_RS12955
subclass of: SO_0000673
so part of: LVJ81_RS12955
location: 8505..>8819
location: region:8505-8819:1
so has part: feature:8505-8819:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:8505-8819:1:exon

LVJ81_RS12960
type: Gene
subclass of: SO_0000704
RO_0002162: 61
locus tag: LVJ81_RS12960
old locus tag: LVJ81_12960
pseudo: true
so part of: sequence
location: <8821..9258
location: region:8821-9258:1
so has part: feature:8821-9258:1:exon
subclass of: SO_0000010

position:8821:1
position: 8821
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:9258:1
position: 9258
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8821-9258:1:exon

LVJ81_RS12960
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61
locus tag: LVJ81_RS12960
old locus tag: LVJ81_12960
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004176201.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO process: GO:0006310 - DNA recombination [Evidence IEA]
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: recombinase family protein
SIO_010081: LVJ81_RS12960
subclass of: SO_0000673
so part of: LVJ81_RS12960
location: <8821..9258
location: region:8821-9258:1
so has part: feature:8821-9258:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:8821-9258:1:exon

LVJ81_RS12965
type: Gene
subclass of: SO_0000704
RO_0002162: 61
locus tag: LVJ81_RS12965
old locus tag: LVJ81_12965
so part of: sequence
location: 9284..9586
location: region:9284-9586:1
so has part: feature:9284-9586:1:exon
subclass of: SO_0000010

position:9284:1
position: 9284
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9586:1
position: 9586
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9284-9586:1:exon

LVJ81_RS12965
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61
locus tag: LVJ81_RS12965
old locus tag: LVJ81_12965
inference: COORDINATES: protein motif:HMM:NF015205.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: antirestriction protein
translation: MTPEYTGGYWSFHHLSNKGCLSVLERDEGSTLLLVSPNGFNARMGVFSASIVVNLMVLSDLSFATHQNPRLCAQVSHLFHALRDYALEQPNASETLAAID
SIO_010081: LVJ81_RS12965
subclass of: SO_0000673
so part of: LVJ81_RS12965
location: 9284..9586
location: region:9284-9586:1
so has part: feature:9284-9586:1:exon

WP_019959547.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9284-9586:1:exon

LVJ81_RS12970
type: Gene
subclass of: SO_0000704
RO_0002162: 61
locus tag: LVJ81_RS12970
old locus tag: LVJ81_12970
so part of: sequence
location: 9522..10457
location: region:9522-10457:1
so has part: feature:9522-10457:1:exon
subclass of: SO_0000010

position:9522:1
position: 9522
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10457:1
position: 10457
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9522-10457:1:exon

LVJ81_RS12970
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61
locus tag: LVJ81_RS12970
old locus tag: LVJ81_12970
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010487174.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MPCVITLWSNQTPVKLWQRSIDHLPTHSSPPPVLGRISIGKVVEKNGKRLPEKDDEFTLTTQIQSKGQWLKHPLDEQLRQQQNTDKLRVIPIRLLFNQPDLNFRAQYTLFDRSSGRPMCVGNGESCKRITANGVQSLPCPSPVACEYGQAGYCKPYGRLNVVIGDEDELGTFVFRTTGFNSIRTLASRLNYFSAVSNQQLACLPLALRIRGKSTVQSFRQTIFYVDITTRPEHSLEQTLAMATELNQQRQQAGFNQQALDEAAKAGFANGAFEDTEDEGLEVVEEFYPQETSNIESAQSAVGLLADKLQAK
SIO_010081: LVJ81_RS12970
subclass of: SO_0000673
so part of: LVJ81_RS12970
location: 9522..10457
location: region:9522-10457:1
so has part: feature:9522-10457:1:exon

WP_211206692.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9522-10457:1:exon

LVJ81_RS12975
type: Gene
subclass of: SO_0000704
RO_0002162: 61
locus tag: LVJ81_RS12975
old locus tag: LVJ81_12975
so part of: sequence
location: 10522..11214
location: region:10522-11214:1
so has part: feature:10522-11214:1:exon
subclass of: SO_0000010

position:10522:1
position: 10522
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11214:1
position: 11214
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10522-11214:1:exon

LVJ81_RS12975
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61
locus tag: LVJ81_RS12975
old locus tag: LVJ81_12975
inference: COORDINATES: protein motif:HMM:NF037233.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MPNHCSQHFSFTGHPKDIQQLYRHIVNADGQQAVIDFNRIIPMPQALDIENTNQGQNALALLQANPNQTVINTDLFPHAYQLIQALSKYGFEWQSLTIGQAIMVLENESDLQLHFGLDLGLGRQYQKNLQQYGHFSWYHWRLEHWGTKWNAYNCELELSEDCTCLSGYLETAWSPAEPIYRKLAQLYPSVSVEIEYMDEFAEFAGVYRSDGQGGLMDEEYTDEQIDALFS
SIO_010081: LVJ81_RS12975
subclass of: SO_0000673
so part of: LVJ81_RS12975
location: 10522..11214
location: region:10522-11214:1
so has part: feature:10522-11214:1:exon

WP_019959545.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10522-11214:1:exon

LVJ81_RS12980
type: Gene
subclass of: SO_0000704
RO_0002162: 61
locus tag: LVJ81_RS12980
old locus tag: LVJ81_12980
so part of: sequence
location: 11526..11891
location: region:11526-11891:1
so has part: feature:11526-11891:1:exon
subclass of: SO_0000010

position:11526:1
position: 11526
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11891:1
position: 11891
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11526-11891:1:exon

LVJ81_RS12980
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61
locus tag: LVJ81_RS12980
old locus tag: LVJ81_12980
inference: COORDINATES: protein motif:HMM:NF013235.2
GO function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO process: GO:0006270 - DNA replication initiation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiation protein
translation: MVNEVEKKFVGLQSKNVVLSNALVRSAQGLTLAEKRILMAAISRMDGVMKPIQITAHEYAATFQLPIRQAYEQLRDAAKVFLSKHITYYGEYNGHKGVFQVNWLSSVFYTHNEGFMSYCQI
SIO_010081: LVJ81_RS12980
subclass of: SO_0000673
so part of: LVJ81_RS12980
location: 11526..11891
location: region:11526-11891:1
so has part: feature:11526-11891:1:exon

WP_051083058.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11526-11891:1:exon

LVJ81_RS12985
type: Gene
subclass of: SO_0000704
RO_0002162: 61
locus tag: LVJ81_RS12985
old locus tag: LVJ81_12985
pseudo: true
so part of: sequence
location: complement(<11944..>12440)
location: region:11944-12440:-1
so has part: feature:11944-12440:-1:exon
subclass of: SO_0000010

position:11944:-1
position: 11944
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:12440:-1
position: 12440
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11944-12440:-1:exon

LVJ81_RS12985
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61
locus tag: LVJ81_RS12985
old locus tag: LVJ81_12985
inference: COORDINATES: similar to AA sequence:RefSeq:WP_076611584.1
note: frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: IS3 family transposase
SIO_010081: LVJ81_RS12985
subclass of: SO_0000673
so part of: LVJ81_RS12985
location: complement(<11944..>12440)
location: region:11944-12440:-1
so has part: feature:11944-12440:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:11944-12440:-1:exon

LVJ81_RS12990
type: Gene
subclass of: SO_0000704
RO_0002162: 61
locus tag: LVJ81_RS12990
old locus tag: LVJ81_12990
pseudo: true
so part of: sequence
location: 12547..13800
location: region:12547-13800:1
so has part: feature:12547-13800:1:exon
subclass of: SO_0000010

position:12547:1
position: 12547
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13800:1
position: 13800
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12547-13800:1:exon

LVJ81_RS12990
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61
locus tag: LVJ81_RS12990
old locus tag: LVJ81_12990
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011805383.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: IS256 family transposase
SIO_010081: LVJ81_RS12990
subclass of: SO_0000673
so part of: LVJ81_RS12990
location: 12547..13800
location: region:12547-13800:1
so has part: feature:12547-13800:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:12547-13800:1:exon

LVJ81_RS12995
type: Gene
subclass of: SO_0000704
RO_0002162: 61
locus tag: LVJ81_RS12995
old locus tag: LVJ81_12995
so part of: sequence
location: 14051..14251
location: region:14051-14251:1
so has part: feature:14051-14251:1:exon
subclass of: SO_0000010

position:14051:1
position: 14051
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14251:1
position: 14251
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14051-14251:1:exon

LVJ81_RS12995
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61
locus tag: LVJ81_RS12995
old locus tag: LVJ81_12995
inference: COORDINATES: protein motif:HMM:NF037233.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSGYLETAWSPAEPIYRKLAQLYLSLNIEIAYEDEFAEFAGVYRSDGEGGLVDEEYTDEQIEQMYT
SIO_010081: LVJ81_RS12995
subclass of: SO_0000673
so part of: LVJ81_RS12995
location: 14051..14251
location: region:14051-14251:1
so has part: feature:14051-14251:1:exon

WP_155970653.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14051-14251:1:exon

LVJ81_RS13000
type: Gene
subclass of: SO_0000704
RO_0002162: 61
locus tag: LVJ81_RS13000
old locus tag: LVJ81_13000
so part of: sequence
location: 14639..15529
location: region:14639-15529:1
so has part: feature:14639-15529:1:exon
subclass of: SO_0000010

position:14639:1
position: 14639
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15529:1
position: 15529
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14639-15529:1:exon

LVJ81_RS13000
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61
locus tag: LVJ81_RS13000
old locus tag: LVJ81_13000
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003799062.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiator protein A
translation: MSYSNKTALDIIANRKKELAIKEEANKPSHLAPIKYPQTDFFIADIFDTVTYRSDLASMEYPLFALKAGDTRSRVYEHDGLIISIDPNRYGVATMHDKDIWIYCISKICQAMYEGEEIHRKVRFTIYDYLKTTNRHISGSDYERTKEALERLKGTSIKVESENKKERIARSFSLISDWYIVEEKDGRMIRVEVEIPQWLFNSVANKQVLSISPDYFRLRRPLDRRIYELARKHCGYQSSWKIGLDLLHRKSGSTGDLRKFRLNIKSLAESDELPDYILRFDHNKDMVIFKKRSKNK
SIO_010081: LVJ81_RS13000
subclass of: SO_0000673
so part of: LVJ81_RS13000
location: 14639..15529
location: region:14639-15529:1
so has part: feature:14639-15529:1:exon

WP_019959522.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14639-15529:1:exon

LVJ81_RS13005
type: Gene
subclass of: SO_0000704
RO_0002162: 61
locus tag: LVJ81_RS13005
old locus tag: LVJ81_13005
so part of: sequence
location: complement(15647..15922)
location: region:15647-15922:-1
so has part: feature:15647-15922:-1:exon
subclass of: SO_0000010

position:15647:-1
position: 15647
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15922:-1
position: 15922
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15647-15922:-1:exon

LVJ81_RS13005
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61
locus tag: LVJ81_RS13005
old locus tag: LVJ81_13005
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MDDLKKTKPTMSADEFMKADVFNPQIAKPRNSKIYSITLTSEYSEIMDRAFLTSKHTKATRSGIVRMALTLLNDLSDEEIQALASRVLDKN
SIO_010081: LVJ81_RS13005
subclass of: SO_0000673
so part of: LVJ81_RS13005
location: complement(15647..15922)
location: region:15647-15922:-1
so has part: feature:15647-15922:-1:exon

WP_019959521.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15647-15922:-1:exon

LVJ81_RS13010
type: Gene
subclass of: SO_0000704
RO_0002162: 61
locus tag: LVJ81_RS13010
old locus tag: LVJ81_13010
so part of: sequence
location: complement(15915..16565)
location: region:15915-16565:-1
so has part: feature:15915-16565:-1:exon
subclass of: SO_0000010

position:15915:-1
position: 15915
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16565:-1
position: 16565
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15915-16565:-1:exon

LVJ81_RS13010
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61
locus tag: LVJ81_RS13010
old locus tag: LVJ81_13010
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004763413.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: AAA family ATPase
translation: MIVLIGGEKGGAGKSCLAQNLSVYLQQQGRDILLIDADPQATTTDWAQERAENPDVPNIKSVQASGILKDTITDLSKKYQDIVIDVGGANSQSLRSGMVFSTHLLLPFRPKRRDLRTLDKMAQLIDMAKSFNANLKVNAIITQCPTLPSQYSRILKAKELCESYDIPPLNAVTFQRNVYDDTEENGLSVLEVDYDDKAKIEIHEIALEMFGDLNHG
SIO_010081: LVJ81_RS13010
subclass of: SO_0000673
so part of: LVJ81_RS13010
location: complement(15915..16565)
location: region:15915-16565:-1
so has part: feature:15915-16565:-1:exon

WP_019959520.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15915-16565:-1:exon

LVJ81_RS13015
type: Gene
subclass of: SO_0000704
RO_0002162: 61
locus tag: LVJ81_RS13015
old locus tag: LVJ81_13015
so part of: sequence
location: 16887..17048
location: region:16887-17048:1
so has part: feature:16887-17048:1:exon
subclass of: SO_0000010

position:16887:1
position: 16887
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17048:1
position: 17048
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16887-17048:1:exon

LVJ81_RS13015
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61
locus tag: LVJ81_RS13015
old locus tag: LVJ81_13015
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MQLVKEYNELQQAKKDAQLEREQLLNKTKSQADNFLSKAKLQVEKYKQEVVRW
SIO_010081: LVJ81_RS13015
subclass of: SO_0000673
so part of: LVJ81_RS13015
location: 16887..17048
location: region:16887-17048:1
so has part: feature:16887-17048:1:exon

WP_019959518.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16887-17048:1:exon

LVJ81_RS13020
type: Gene
subclass of: SO_0000704
RO_0002162: 61
locus tag: LVJ81_RS13020
old locus tag: LVJ81_13020
pseudo: true
so part of: sequence
location: complement(17082..>17312)
location: region:17082-17312:-1
so has part: feature:17082-17312:-1:exon
subclass of: SO_0000010

position:17082:-1
position: 17082
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17312:-1
position: 17312
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17082-17312:-1:exon

LVJ81_RS13020
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61
locus tag: LVJ81_RS13020
old locus tag: LVJ81_13020
inference: COORDINATES: similar to AA sequence:RefSeq:WP_076611584.1
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: transposase
SIO_010081: LVJ81_RS13020
subclass of: SO_0000673
so part of: LVJ81_RS13020
location: complement(17082..>17312)
location: region:17082-17312:-1
so has part: feature:17082-17312:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:17082-17312:-1:exon

LVJ81_RS13025
type: Gene
subclass of: SO_0000704
RO_0002162: 61
locus tag: LVJ81_RS13025
old locus tag: LVJ81_13025
so part of: sequence
location: 17327..17647
location: region:17327-17647:1
so has part: feature:17327-17647:1:exon
subclass of: SO_0000010

position:17327:1
position: 17327
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17647:1
position: 17647
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17327-17647:1:exon

LVJ81_RS13025
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 61
locus tag: LVJ81_RS13025
old locus tag: LVJ81_13025
inference: COORDINATES: protein motif:HMM:NF022019.2
GO function: GO:0004518 - nuclease activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: GIY-YIG nuclease family protein
translation: MTRRLEPMGRVKELSGASVPFLFDIHALIYSENAPELERQLHQEFNDCRVNKINERKEFFKVSLADVKQKLLDLNIEVKFTLAAEAEEYRRTLQIEALPVEAQSHI
SIO_010081: LVJ81_RS13025
subclass of: SO_0000673
so part of: LVJ81_RS13025
location: 17327..17647
location: region:17327-17647:1
so has part: feature:17327-17647:1:exon

WP_019959517.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17327-17647:1:exon