Hydra vulgaris mitochondrion chromosome 2, complete sequence.
type: Entry
definition: Hydra vulgaris mitochondrion chromosome 2, complete sequence.
sequence version: NC_011221.1
sequence date: 2023-04-03
sequence: sequence
division: INV
label: NC_011221.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA927338
keyword: RefSeq
keyword: TPA:INFERENTIAL
source: mitochondrion Hydra vulgaris (hydra)
organism: Hydra vulgaris
taxonomy: Eukaryota; Metazoa; Cnidaria; Hydrozoa; Hydroidolina; Anthoathecata; Aplanulata; Hydridae; Hydra.
reference: 1
references: 18655725
reference: 2
reference: 3
comment: REVIEWED REFSEQ: This record has been curated by NCBI staff. The\nreference sequence was derived from BN001180.\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000819
sequence length: 7686
topology: linear
so has quality: SO_0000987
location: 1..7686
location: region:1-7686:1
RO_0002162: 6087

NC_011221
type: RefSeq
SIO_000068: refseq

PRJNA927338
type: BioProject
SIO_000068: bioproject

1
title: A fragmented metazoan organellar genome: the two mitochondrial chromosomes of Hydra magnipapillata
author: Voigt, O.
author: Erpenbeck, D.
author: Worheide, G.
journal: BMC Genomics 9, 350 (2008)
pubmed: 18655725
comments: Publication Status: Online-Only

18655725
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
journal: Submitted (12-SEP-2008) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA

3
title: Direct Submission
author: Voigt, O.
journal: Submitted (01-NOV-2007) Voigt O., Department of Geobiology, University Goettingen, Goldschmidtstr. 3, D-37077 Goettingen, GERMANY

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7686:1
position: 7686
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-7686:1:source
so part of: sequence
organism: Hydra vulgaris
organelle: mitochondrion
mol type: genomic DNA
chromosome: 2
common: hydra

6087
type: Taxonomy
SIO_000068: taxonomy

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 6087
rpt type: inverted
rpt type: terminal
so part of: sequence
location: 1..191
location: region:1-191:1
so has part: feature:1-191:1:region

position:191:1
position: 191
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-191:1:region

KEG85_p01
type: Gene
subclass of: SO_0000704
RO_0002162: 6087
gene: COX1
locus tag: KEG85_p01
note: 3' end
pseudo: true
so part of: sequence
location: complement(138..>191)
location: region:138-191:-1
so has part: feature:138-191:-1:exon

6904235
type: Gene
SIO_000068: ncbigene

position:138:-1
position: 138
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:191:-1
position: 191
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:138-191:-1:exon

KEG85_t01
type: Gene
subclass of: SO_0000704
RO_0002162: 6087
locus tag: KEG85_t01
so part of: sequence
location: 232..302
location: region:232-302:1
so has part: feature:232-302:1:exon
subclass of: SO_0000663

64987955
type: Gene
SIO_000068: ncbigene

position:232:1
position: 232
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:302:1
position: 302
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:232-302:1:exon

KEG85_t01
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 6087
locus tag: KEG85_t01
product: tRNA-Met
note: trnM
codon recognized: AUG
SIO_010081: KEG85_t01
subclass of: SO_0000673
so part of: KEG85_t01
location: 232..302
location: region:232-302:1
so has part: feature:232-302:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:232-302:1:exon

KEG85_r01
type: Gene
subclass of: SO_0000704
RO_0002162: 6087
locus tag: KEG85_r01
so part of: sequence
location: 307..1207
location: region:307-1207:1
so has part: feature:307-1207:1:exon
subclass of: SO_0000573

64987956
type: Gene
SIO_000068: ncbigene

position:307:1
position: 307
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1207:1
position: 1207
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:307-1207:1:exon

KEG85_r01
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 6087
locus tag: KEG85_r01
product: s-rRNA
note: 12S ribosomal RNA
SIO_010081: KEG85_r01
subclass of: SO_0000673
so part of: KEG85_r01
location: 307..1207
location: region:307-1207:1
so has part: feature:307-1207:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:307-1207:1:exon

KEG85_p08
type: Gene
subclass of: SO_0000704
RO_0002162: 6087
gene: ND6
locus tag: KEG85_p08
so part of: sequence
location: 1208..1765
location: region:1208-1765:1
so has part: feature:1208-1765:1:exon
subclass of: SO_0000010

6904236
type: Gene
SIO_000068: ncbigene

position:1208:1
position: 1208
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1765:1
position: 1765
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1208-1765:1:exon

KEG85_p08
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 6087
gene: ND6
locus tag: KEG85_p08
codon start: 1
transl table: 4
product: NADH dehydrogenase subunit 6
translation: MNEFFFFFSILIILGCLMCINSLNPIHSVFWLVTVFFFSFALLINLNLEFLSLLLIIIYVGAIVILFLFVIMMLDIIQIKKNSNINNIIPIILIILSLLTIKIINKDIFLSYHLNNDFLNFNLINHYNFHNLALFFYSKYSINFILISIILSIGMIGVIVLTITYNSNSKKQKIFIQHLRNNSWN
SIO_010081: KEG85_p08
subclass of: SO_0000673
so part of: KEG85_p08
location: 1208..1765
location: region:1208-1765:1
so has part: feature:1208-1765:1:exon

YP_002221532.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1208-1765:1:exon

KEG85_p07
type: Gene
subclass of: SO_0000704
RO_0002162: 6087
gene: ND3
locus tag: KEG85_p07
so part of: sequence
location: 1756..2103
location: region:1756-2103:1
so has part: feature:1756-2103:1:exon
subclass of: SO_0000010

6904242
type: Gene
SIO_000068: ncbigene

position:1756:1
position: 1756
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2103:1
position: 2103
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1756-2103:1:exon

KEG85_p07
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 6087
gene: ND3
locus tag: KEG85_p07
codon start: 1
transl table: 4
product: NADH dehydrogenase subunit 3
translation: MKLNLFIYLSISFILSFIVLFFSIFLSFKSPDKEKVSIYECGFNPFHSTGQPFSIRFFLISILFLVFDLEIIYLFPWSVNSNLIDYYSQFIIYLFIMILVIGLVYEWLRGGLEWE
SIO_010081: KEG85_p07
subclass of: SO_0000673
so part of: KEG85_p07
location: 1756..2103
location: region:1756-2103:1
so has part: feature:1756-2103:1:exon

YP_002221533.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1756-2103:1:exon

KEG85_p06
type: Gene
subclass of: SO_0000704
RO_0002162: 6087
gene: ND4L
locus tag: KEG85_p06
so part of: sequence
location: 2103..2402
location: region:2103-2402:1
so has part: feature:2103-2402:1:exon
subclass of: SO_0000010

6904239
type: Gene
SIO_000068: ncbigene

position:2402:1
position: 2402
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2103-2402:1:exon

KEG85_p06
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 6087
gene: ND4L
locus tag: KEG85_p06
codon start: 1
transl table: 4
product: NADH dehydrogenase subunit 4L
translation: MLFDFNLLVVIMFCISIIGIIINRSNIILILVSIEILLLSISMNFMLTSLTNFSLEGQIIAIYVITIAAIESAIGLSIIVAFYKIKGSISLKLLNLLKG
SIO_010081: KEG85_p06
subclass of: SO_0000673
so part of: KEG85_p06
location: 2103..2402
location: region:2103-2402:1
so has part: feature:2103-2402:1:exon

YP_002221534.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2103-2402:1:exon

KEG85_p05
type: Gene
subclass of: SO_0000704
RO_0002162: 6087
gene: ND1
locus tag: KEG85_p05
so part of: sequence
location: 2402..3391
location: region:2402-3391:1
so has part: feature:2402-3391:1:exon
subclass of: SO_0000010

6904241
type: Gene
SIO_000068: ncbigene

position:3391:1
position: 3391
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2402-3391:1:exon

KEG85_p05
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 6087
gene: ND1
locus tag: KEG85_p05
codon start: 1
transl table: 4
product: NADH dehydrogenase subunit 1
translation: MKNIYLIILEIVKFLTIVIPVLISVAYLTLAERKILGYSQNRKGPNVVGIYGLLQPLADGVKLFSKELIIPNHVNIFLYLFSPILALSLSLLIWIIIPLGINNLIFDFNLGIMFIFAISSINIYSILLSGWSSNSKYAFLGSLRAAAQMISYEVCISLIIFSCILCAGTLNIYSLINSQSQSISYIFPLWPIAIMFFICLLAETNRAPFDLTEGESELVSGYNVEYSSMSFALFFLAEYSHIILSSAFFVILFLGNWSNYFFINNFIFFLKMILFIFLFIWVRTSFPRLRYDQLMSLLWKSYLPLSLSFIIITNSLLWAFWGLSNKWCI
SIO_010081: KEG85_p05
subclass of: SO_0000673
so part of: KEG85_p05
location: 2402..3391
location: region:2402-3391:1
so has part: feature:2402-3391:1:exon

YP_002221535.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2402-3391:1:exon

KEG85_p04
type: Gene
subclass of: SO_0000704
RO_0002162: 6087
gene: ND4
locus tag: KEG85_p04
so part of: sequence
location: 3382..4836
location: region:3382-4836:1
so has part: feature:3382-4836:1:exon
subclass of: SO_0000010

6904238
type: Gene
SIO_000068: ncbigene

position:3382:1
position: 3382
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4836:1
position: 4836
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3382-4836:1:exon

KEG85_p04
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 6087
gene: ND4
locus tag: KEG85_p04
codon start: 1
transl table: 4
product: NADH dehydrogenase subunit 4
translation: MYIIFLLLIPFLSILNILFLKRNSSNIFNISLSWSLILLLYYIVFFVLNYRIFNFQFSIDFNWLLINSIFVNWNNFILSVDGISIFFIGLSILLIPICILISLRSIKYFKKEFNILLFISVILLIGVFSILDVLWFYILFESILIPVFIMIGIWGYREEKIKAAFYFFFYTLIGSLLMLISIFKLYSLIGTTNYENLLIIKIPYDIQFWLFIGFFIGLAVKIPMVPFHIWLPQAHVEAPIAGSILLAGILLKLGGYGLIRFCYPIFPSASQFYYPLIIIISIIAIVYGALTTCRQIDIKRLIAYSSVSHMGLVTVGIFSHSIEGLTGSILMMIAHGLSSSGLFIITSIIYFRFHSRIIKYFRGLTITMPILSIITFILILANISFPLTLNFIAELFLIISAFKFSLFIILLILLGVFINLIYSLWVYNRIFFGSNSIHLKFSRDIVNFEFQSLLPLIIFIIILGIYPNILINPITFSSYINISI
SIO_010081: KEG85_p04
subclass of: SO_0000673
so part of: KEG85_p04
location: 3382..4836
location: region:3382-4836:1
so has part: feature:3382-4836:1:exon

YP_002221536.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3382-4836:1:exon

KEG85_p03
type: Gene
subclass of: SO_0000704
RO_0002162: 6087
gene: CYTB
locus tag: KEG85_p03
so part of: sequence
location: 4836..5984
location: region:4836-5984:1
so has part: feature:4836-5984:1:exon
subclass of: SO_0000010

6904240
type: Gene
SIO_000068: ncbigene

position:5984:1
position: 5984
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4836-5984:1:exon

KEG85_p03
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 6087
gene: CYTB
locus tag: KEG85_p03
codon start: 1
transl table: 4
product: cytochrome b
translation: MRIRKNNHLIKHINSTLIDLPSPSNINYLWNFGSLLGLCFAIQLVTGIFLAMHYCGDIILAFKSIVHICRDVNYGFLLKSIHANGASLFFICVYIHIGKSLYYGGYQKKPIWFSGIIIFIVMMITAFIGYVLPWGQMSFWGATVITNFLSAIPYIGDDIVQWIWGGFSVNNATLGRFFSLHYLFPFVLASLILIHIVLIHSVGSSNPLGINSNFDKVPFHWYFAIKDIYGFFILIFILLFIVFFYTNTLGDPENFINANSLVTPVHIMPEWYFLFAYAILRSIPNKLGGVLALILSIVILFIIPFLHTNKFFSLTFRPIGKLLYWVFIANFILLTWLGSKPIENPYILISIISSLFYFFYFLFIIPIIGKLENYLFFQKVSV
SIO_010081: KEG85_p03
subclass of: SO_0000673
so part of: KEG85_p03
location: 4836..5984
location: region:4836-5984:1
so has part: feature:4836-5984:1:exon

YP_002221537.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4836-5984:1:exon

KEG85_p02
type: Gene
subclass of: SO_0000704
RO_0002162: 6087
gene: COX1
locus tag: KEG85_p02
so part of: sequence
location: 5977..7545
location: region:5977-7545:1
so has part: feature:5977-7545:1:exon
subclass of: SO_0000010

6904237
type: Gene
SIO_000068: ncbigene

position:5977:1
position: 5977
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7545:1
position: 7545
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5977-7545:1:exon

KEG85_p02
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 6087
gene: COX1
locus tag: KEG85_p02
codon start: 1
transl table: 4
product: cytochrome c oxidase subunit I
translation: MYNWITRWMFSTNHKDIGTLYIIFGAFSGMIGTALSMLIRIELSTPGRVIGDDHLYNVIVTAHAFVMIFFLVMPVLIGGYGNWFVPIYIGAPDMAFPRLNNLSFWLLPPALILLLTSSLVEQGAGTGWTVYPPLSGPLAHSGGSVDLAIFSLHCAGFSSIAGAINFITTIFNMRTPGLTFDKLPLFVWSVLITAFLLLLSLPVLAGAITMLLTDRNFNTTFFDPAGGGDPVLYQHLFWFFGHPEVYILIIPGFGIISQIIPIFSSKNQVFGYLGMIYAQLAIAFLGFIVWAHHMFTVGMDVDTRAYFTAATMIIAVPTGIKIFSWLATMYGGKINLSTPMLWATGFIFLFTLGGLTGVILANGSLDILLHDTYYVVAHFHYVLSLGAVFAMFGGFYFWFGKISGFAINETFGKIHFWITFIGVNLTFFPQHFLGLAGMPRRYADFPDSLFTWNAISSLGSIISIIGVVWFIYVIFDAFYSEEKFISWNNLDVEKINTLEWSLNCPPSHHTFNELPFINHSTH
SIO_010081: KEG85_p02
subclass of: SO_0000673
so part of: KEG85_p02
location: 5977..7545
location: region:5977-7545:1
so has part: feature:5977-7545:1:exon

YP_002221538.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5977-7545:1:exon

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 6087
rpt type: inverted
rpt type: terminal
so part of: sequence
location: 7492..7686
location: region:7492-7686:1
so has part: feature:7492-7686:1:region

position:7492:1
position: 7492
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7492-7686:1:region