Hydra magnipapillata mitochondrion chromosome 1, complete sequence.
type: Entry
definition: Hydra magnipapillata mitochondrion chromosome 1, complete sequence.
sequence version: NC_011220.1
sequence date: 2023-04-03
sequence: sequence
division: INV
label: NC_011220.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA927338
keyword: RefSeq
keyword: TPA:INFERENTIAL
source: mitochondrion Hydra vulgaris (hydra)
organism: Hydra vulgaris
taxonomy: Eukaryota; Metazoa; Cnidaria; Hydrozoa; Hydroidolina; Anthoathecata; Aplanulata; Hydridae; Hydra.
reference: 1
references: 18655725
reference: 2
reference: 3
comment: REVIEWED REFSEQ: This record has been curated by NCBI staff. The\nreference sequence was derived from BN001179.\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000819
sequence length: 8194
topology: linear
so has quality: SO_0000987
location: 1..8194
location: region:1-8194:1
RO_0002162: 6087

NC_011220
type: RefSeq
SIO_000068: refseq

PRJNA927338
type: BioProject
SIO_000068: bioproject

1
title: A fragmented metazoan organellar genome: the two mitochondrial chromosomes of Hydra magnipapillata
author: Voigt, O.
author: Erpenbeck, D.
author: Worheide, G.
journal: BMC Genomics 9, 350 (2008)
pubmed: 18655725
comments: Publication Status: Online-Only

18655725
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
journal: Submitted (12-SEP-2008) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA

3
title: Direct Submission
author: Voigt, O.
journal: Submitted (01-NOV-2007) Voigt O., Department of Geobiology, University Goettingen, Goldschmidtstr. 3, D-37077 Goettingen, GERMANY

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8194:1
position: 8194
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-8194:1:source
so part of: sequence
organism: Hydra vulgaris
organelle: mitochondrion
mol type: genomic DNA
chromosome: 1
common: hydra

6087
type: Taxonomy
SIO_000068: taxonomy

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 6087
rpt type: inverted
rpt type: terminal
so part of: sequence
location: 1..195
location: region:1-195:1
so has part: feature:1-195:1:region

position:195:1
position: 195
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-195:1:region

COX1
type: Gene
subclass of: SO_0000704
RO_0002162: 6087
gene: COX1
note: 3' end
pseudo: true
so part of: sequence
location: complement(142..195)
location: region:142-195:-1
so has part: feature:142-195:-1:exon

6904223
type: Gene
SIO_000068: ncbigene

position:142:-1
position: 142
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:195:-1
position: 195
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:142-195:-1:exon

trnM
type: Gene
subclass of: SO_0000704
RO_0002162: 6087
gene: trnM
so part of: sequence
location: 236..306
location: region:236-306:1
so has part: feature:236-306:1:exon
subclass of: SO_0000663

6904226
type: Gene
SIO_000068: ncbigene

position:236:1
position: 236
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:306:1
position: 306
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:236-306:1:exon

trnM
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 6087
gene: trnM
product: tRNA-Met
codon recognized: AUG
SIO_010081: trnM
subclass of: SO_0000673
so part of: trnM
location: 236..306
location: region:236-306:1
so has part: feature:236-306:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:236-306:1:exon

lsu-rRNA
type: Gene
subclass of: SO_0000704
RO_0002162: 6087
gene: lsu-rRNA
so part of: sequence
location: 307..2044
location: region:307-2044:1
so has part: feature:307-2044:1:exon
subclass of: SO_0000573

6904232
type: Gene
SIO_000068: ncbigene

position:307:1
position: 307
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2044:1
position: 2044
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:307-2044:1:exon

lsu-rRNA
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 6087
gene: lsu-rRNA
product: l-rRNA
note: 16S ribosomal RNA
SIO_010081: lsu-rRNA
subclass of: SO_0000673
so part of: lsu-rRNA
location: 307..2044
location: region:307-2044:1
so has part: feature:307-2044:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:307-2044:1:exon

trnW
type: Gene
subclass of: SO_0000704
RO_0002162: 6087
gene: trnW
so part of: sequence
location: 2045..2113
location: region:2045-2113:1
so has part: feature:2045-2113:1:exon
subclass of: SO_0000663

6904229
type: Gene
SIO_000068: ncbigene

position:2045:1
position: 2045
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2113:1
position: 2113
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2045-2113:1:exon

trnW
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 6087
gene: trnW
product: tRNA-Trp
SIO_010081: trnW
subclass of: SO_0000673
so part of: trnW
location: 2045..2113
location: region:2045-2113:1
so has part: feature:2045-2113:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2045-2113:1:exon

COX2
type: Gene
subclass of: SO_0000704
RO_0002162: 6087
gene: COX2
so part of: sequence
location: 2117..2872
location: region:2117-2872:1
so has part: feature:2117-2872:1:exon
subclass of: SO_0000010

6904233
type: Gene
SIO_000068: ncbigene

position:2117:1
position: 2117
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2872:1
position: 2872
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2117-2872:1:exon

COX2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 6087
gene: COX2
codon start: 1
transl table: 4
product: cytochrome c oxidase subunit II
translation: MKNLIFLISFFTCLLFNNFIYKDIPEINQLSFQESASSCSNNLIFFHDNTMFYMIIILVLVGWLLFSIIINKNYNKFLLENNFIEIVWTLIPAIILIIIAIPSLFLLYSIDENVEPSLTVKIVGHQWYWSYEYSNFSPNIEFDSYMIPTTDLNQGDFRLLETDNDLVLPVNTKIKLIVSSADVIHCWTVPSLGVKVDAIPGRLNQLNFIINRPGKFFGQCSELCGLNHSFMPISIYSVSQEKFINWSINKT
SIO_010081: COX2
subclass of: SO_0000673
so part of: COX2
location: 2117..2872
location: region:2117-2872:1
so has part: feature:2117-2872:1:exon

YP_002221526.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2117-2872:1:exon

ATP8
type: Gene
subclass of: SO_0000704
RO_0002162: 6087
gene: ATP8
so part of: sequence
location: 2874..3080
location: region:2874-3080:1
so has part: feature:2874-3080:1:exon
subclass of: SO_0000010

6904227
type: Gene
SIO_000068: ncbigene

position:2874:1
position: 2874
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3080:1
position: 3080
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2874-3080:1:exon

ATP8
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 6087
gene: ATP8
codon start: 1
transl table: 4
product: ATP synthase F0 subunit 8
translation: MSQLDLSLYLNHYFVLLLLFFLLIILISLRFYNFFLVLNIRNNFISNSSESINNNFKQFSILYNILKL
SIO_010081: ATP8
subclass of: SO_0000673
so part of: ATP8
location: 2874..3080
location: region:2874-3080:1
so has part: feature:2874-3080:1:exon

YP_002221527.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2874-3080:1:exon

ATP6
type: Gene
subclass of: SO_0000704
RO_0002162: 6087
gene: ATP6
so part of: sequence
location: 3080..3781
location: region:3080-3781:1
so has part: feature:3080-3781:1:exon
subclass of: SO_0000010

6904225
type: Gene
SIO_000068: ncbigene

position:3781:1
position: 3781
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3080-3781:1:exon

ATP6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 6087
gene: ATP6
codon start: 1
transl table: 4
product: ATP synthase F0 subunit 6
translation: MSSYFDHFLIIKIFGFLFDSHLVLILSIFIIFVALNFTFIIPSRIQLFFEMIINHFFQIVKENLGNNSQIYVLFLSTLFFYLLSINLLGFFIFTLPPTTHISLTFGLSFFIWLSIIVFGFFNFKSSYLSMFMPTGAPLGLSPLLVFIELASHISRPIALGMRLAANLTAGHILLTILSDFIFKMICFSSSFFNLFPLMIIIFMIILEIGVLVIQAYVFTLLCLIYLKDSLILH
SIO_010081: ATP6
subclass of: SO_0000673
so part of: ATP6
location: 3080..3781
location: region:3080-3781:1
so has part: feature:3080-3781:1:exon

YP_002221528.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3080-3781:1:exon

COX3
type: Gene
subclass of: SO_0000704
RO_0002162: 6087
gene: COX3
so part of: sequence
location: 3781..4566
location: region:3781-4566:1
so has part: feature:3781-4566:1:exon
subclass of: SO_0000010

6904224
type: Gene
SIO_000068: ncbigene

position:4566:1
position: 4566
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3781-4566:1:exon

COX3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 6087
gene: COX3
codon start: 1
transl table: 4
product: cytochrome c oxidase subunit III
translation: MEKYYHPFHLVNPNPWPFCISMGVLYLTLNTVAYFHKGFYYPLLLSFILIILFMILWFTDIFVESSLEGAHTKLVLTGLKLGFILFIISEILFFFSFFWAFFHSSLSPSVEIGINWPPLGIITLNPFSIPLLNTIILLSSGVSVTWCHHSLIQKNRNQSLISLIITITLGLLFTFLQALEYLESNFCISDSVYGSIFFVATGFHGIHVIIGTIFLSVCLLKIYFSHFTNSRHFTFEAASWYWHFVDVVWLFLYICIYWWGS
SIO_010081: COX3
subclass of: SO_0000673
so part of: COX3
location: 3781..4566
location: region:3781-4566:1
so has part: feature:3781-4566:1:exon

YP_002221529.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3781-4566:1:exon

ND2
type: Gene
subclass of: SO_0000704
RO_0002162: 6087
gene: ND2
so part of: sequence
location: 4619..5926
location: region:4619-5926:1
so has part: feature:4619-5926:1:exon
subclass of: SO_0000010

6904228
type: Gene
SIO_000068: ncbigene

position:4619:1
position: 4619
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5926:1
position: 5926
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4619-5926:1:exon

ND2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 6087
gene: ND2
codon start: 1
transl table: 4
product: NADH dehydrogenase subunit 2
translation: MIFNYNNLLIFTFVVFIILNLYLNKHSFFYLIPSILLFIIITQFLKADSFLWISMIIFIIILNNLHLKLENLILYSFILLSIIIIILSNNLIILYLSVEIQTFSLLVLIGSYRNNIKSLEASLKYFILSSISSGFFLLGLVYLFKTSISLDLNLFNFVLNNSSFFYSFSNSILILSLLFKLGLAPFHYWIADIYEGSDFVLILLLSSLCKLSIFIILLKFNNNFEMLMFLGGLSIVIGTIAGFNQTKIKRLIAYSGISNFGFIIISLSLNNIIGIEICLLYLFIYLFTNLFIIMILILYKDNIEFIIELSGYFMNNKILTIALVIITFSIAGIPPLLGFLSKFILISTLINYNYIITGCLCLLITCIGIGFYLRIIKILLFQNNNFYVSWNNIISLDKNNLYLNFIYLGFILYYTLFYLLNPKFFISLITYLLNL
SIO_010081: ND2
subclass of: SO_0000673
so part of: ND2
location: 4619..5926
location: region:4619-5926:1
so has part: feature:4619-5926:1:exon

YP_002221530.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4619-5926:1:exon

ND5
type: Gene
subclass of: SO_0000704
RO_0002162: 6087
gene: ND5
so part of: sequence
location: 5928..7760
location: region:5928-7760:1
so has part: feature:5928-7760:1:exon
subclass of: SO_0000010

6904230
type: Gene
SIO_000068: ncbigene

position:5928:1
position: 5928
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7760:1
position: 7760
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5928-7760:1:exon

ND5
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 6087
gene: ND5
codon start: 1
transl table: 4
product: NADH dehydrogenase subunit 5
translation: MILTIIFLPLFNSLLCGFFGRFFGNKGVKLISFFLIIITLINSWIIFYEINFNTTFLYYILLDWFNLGLLSNSFNLKFDLITTNMLVLVITVSFFVHLFSYSYMENDPHLPRFISYLSLFTFFMIILISSSNLIQLFIGWEGVGLCSYLLINFWYTRIQANKSAIKAMIINKLGDIGLLIGIIYLWIFTGSFEFNDIFIISITNNFYTLYIPLFFVLIGVIGKSAQLGFHMWLPDAMEGPTPVSALIHAATMVTAGVFLIIRMSPIFELSSTVLILIIIIGSLTSFFSATIGMVQNDLKKVIAYSTCSQLGYMIMICGFSFYDLSLFHLINHGFFKALLFLSAGSIIHVINDEQDMRKYGALKNFLPLIFIFIIIGSIALLGLPFLSGFYSKDLIVEVALFSNFLSFSVWISISAVFITAFYSLRLIYLTFINNPQQSINNFNNIHESDYKIIISLSLLTLFSIFSGYIFQFIIIKDNLPNMIYNINKLLPLFLSILGIITAIIIFNNLNKTWNVIFTTYYKNIYLFLINNWYFDILINYILSKKISPLGYKITYKFIDNQILESLGPFYFNKTIGIISNKSSKIYLNSIYSYILITCVFFVFCILLNMN
SIO_010081: ND5
subclass of: SO_0000673
so part of: ND5
location: 5928..7760
location: region:5928-7760:1
so has part: feature:5928-7760:1:exon

YP_002221531.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5928-7760:1:exon

COX1
type: Gene
subclass of: SO_0000704
RO_0002162: 6087
gene: COX1
note: 3' end
pseudo: true
so part of: sequence
location: 7761..8053
location: region:7761-8053:1
so has part: feature:7761-8053:1:exon

6904231
type: Gene
SIO_000068: ncbigene

position:7761:1
position: 7761
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8053:1
position: 8053
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7761-8053:1:exon

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 6087
rpt type: inverted
rpt type: terminal
so part of: sequence
location: 8000..8194
location: region:8000-8194:1
so has part: feature:8000-8194:1:region

position:8000:1
position: 8000
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8000-8194:1:region