Burkholderia pyrrocinia strain DSM 10685 plasmid p2327, complete sequence.
Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.
Complete genome sequence of Burkholderia pyrrocinia 2327(T), the first industrial bacterium which produced antifungal antibiotic pyrrolnitrin
Submitted (11-MAY-2015) School of Applied Biosciences, College of Agriculture and Life Sciences, Kyungpook National University, 80 Daehakro, Bukgu, Daegu 702-701, Republic of Korea
REFSEQ INFORMATION: The reference sequence is identical to\nCP011506.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: RS HGAP Assembly Protocol v. 2.0 in SMRT\n analysis v. 2.3.0\nGenome Coverage :: 123.24x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/23/2023 05:49:01\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 7,217\nCDSs (total) :: 7,126\nGenes (coding) :: 7,001\nCDSs (with protein) :: 7,001\nGenes (RNA) :: 91\nrRNAs :: 7, 6, 6 (5S, 16S, 23S)\ncomplete rRNAs :: 7, 6, 6 (5S, 16S, 23S)\ntRNAs :: 68\nncRNAs :: 4\nPseudo Genes (total) :: 125\nCDSs (without protein) :: 125\nPseudo Genes (ambiguous residues) :: 0 of 125\nPseudo Genes (frameshifted) :: 41 of 125\nPseudo Genes (incomplete) :: 102 of 125\nPseudo Genes (internal stop) :: 9 of 125\nPseudo Genes (multiple problems) :: 25 of 125\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_006487373.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
conjugal transfer protein TraG N-terminal domain-containing protein
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_006487406.1
COORDINATES: similar to AA sequence:RefSeq:WP_006487358.1
COORDINATES: similar to AA sequence:RefSeq:WP_006487416.1
COORDINATES: similar to AA sequence:RefSeq:WP_006487400.1
COORDINATES: similar to AA sequence:RefSeq:WP_006487431.1
COORDINATES: similar to AA sequence:RefSeq:WP_006493940.1
COORDINATES: similar to AA sequence:RefSeq:WP_006487412.1
COORDINATES: similar to AA sequence:RefSeq:WP_006487390.1
COORDINATES: similar to AA sequence:RefSeq:WP_012493832.1
Crp/Fnr family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_011695131.1
GO:0003697 - single-stranded DNA binding [Evidence IEA]
GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO:0018142 - protein-DNA covalent cross-linking [Evidence IEA]
SOS response-associated peptidase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006493623.1
GO:0051782 - negative regulation of cell division [Evidence IEA]; GO:0009432 - SOS response [Evidence IEA]
translesion DNA synthesis-associated protein ImuA
COORDINATES: similar to AA sequence:RefSeq:WP_012211068.1
COORDINATES: similar to AA sequence:RefSeq:WP_012211067.1
COORDINATES: similar to AA sequence:RefSeq:WP_006749801.1
COORDINATES: similar to AA sequence:RefSeq:WP_012734036.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_006749798.1
COORDINATES: similar to AA sequence:RefSeq:WP_011695138.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003910 - DNA ligase (ATP) activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009692911.1
AbrB/MazE/SpoVT family DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006029599.1
type II toxin-antitoxin system VapC family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_006482111.1
COORDINATES: similar to AA sequence:RefSeq:WP_006493602.1
COORDINATES: similar to AA sequence:RefSeq:WP_012735350.1
COORDINATES: similar to AA sequence:RefSeq:WP_008343778.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF019542.2
COORDINATES: similar to AA sequence:RefSeq:WP_001747920.1
GO:0003824 - catalytic activity [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]
GO:0006304 - DNA modification [Evidence IEA]
Eco57I restriction-modification methylase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011864797.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0009036 - type II site-specific deoxyribonuclease activity [Evidence IEA]
GO:0009307 - DNA restriction-modification system [Evidence IEA]
BsuBI/PstI family type II restriction endonuclease
COORDINATES: similar to AA sequence:RefSeq:WP_011352092.1
COORDINATES: similar to AA sequence:RefSeq:WP_017333778.1
COORDINATES: protein motif:HMM:NF022633.2
COORDINATES: similar to AA sequence:RefSeq:WP_014619054.1
COORDINATES: protein motif:HMM:NF020904.2
COORDINATES: similar to AA sequence:RefSeq:WP_004548975.1
ShlB/FhaC/HecB family hemolysin secretion/activation protein
COORDINATES: similar to AA sequence:RefSeq:WP_004524865.1
COORDINATES: similar to AA sequence:RefSeq:WP_011880202.1
COORDINATES: similar to AA sequence:RefSeq:WP_006481591.1
COORDINATES: similar to AA sequence:RefSeq:WP_006481574.1
COORDINATES: similar to AA sequence:RefSeq:WP_009916533.1
COORDINATES: similar to AA sequence:RefSeq:WP_006481590.1
COORDINATES: similar to AA sequence:RefSeq:WP_011695187.1
COORDINATES: similar to AA sequence:RefSeq:WP_006493595.1
COORDINATES: similar to AA sequence:RefSeq:WP_011695189.1
COORDINATES: similar to AA sequence:RefSeq:WP_012732859.1
COORDINATES: similar to AA sequence:RefSeq:WP_006481587.1
COORDINATES: similar to AA sequence:RefSeq:WP_006493591.1
COORDINATES: similar to AA sequence:RefSeq:WP_009521792.1
COORDINATES: similar to AA sequence:RefSeq:WP_006493695.1
COORDINATES: similar to AA sequence:RefSeq:WP_006493693.1
COORDINATES: similar to AA sequence:RefSeq:WP_006488617.1
COORDINATES: similar to AA sequence:RefSeq:WP_006488605.1
COORDINATES: similar to AA sequence:RefSeq:WP_006488606.1
COORDINATES: similar to AA sequence:RefSeq:WP_006488616.1
COORDINATES: similar to AA sequence:RefSeq:WP_011695199.1
COORDINATES: similar to AA sequence:RefSeq:WP_006488607.1
COORDINATES: similar to AA sequence:RefSeq:WP_006488610.1
type IV secretion system DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006488604.1
protein-disulfide reductase DsbD N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006488612.1
COORDINATES: similar to AA sequence:RefSeq:WP_006493937.1
COORDINATES: similar to AA sequence:RefSeq:WP_006488598.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
LuxR C-terminal-related transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_006493948.1
GO:0055085 - transmembrane transport [Evidence IEA]
TRAP transporter substrate-binding protein DctP
COORDINATES: similar to AA sequence:RefSeq:WP_006487429.1
COORDINATES: similar to AA sequence:RefSeq:WP_006487404.1
GO:0003824 - catalytic activity [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006493934.1
COORDINATES: protein motif:HMM:NF013618.2
lytic transglycosylase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006493942.1
COORDINATES: similar to AA sequence:RefSeq:WP_006487426.1
COORDINATES: similar to AA sequence:RefSeq:WP_006487365.1
type IV conjugative transfer system protein TraL
COORDINATES: similar to AA sequence:RefSeq:WP_006487381.1
TraE/TraK family type IV conjugative transfer system protein
COORDINATES: similar to AA sequence:RefSeq:WP_012493842.1
type-F conjugative transfer system secretin TraK
COORDINATES: similar to AA sequence:RefSeq:WP_006487384.1
COORDINATES: similar to AA sequence:RefSeq:WP_006487398.1
COORDINATES: similar to AA sequence:RefSeq:WP_006487356.1
type IV conjugative transfer system lipoprotein TraV
COORDINATES: similar to AA sequence:RefSeq:WP_006487362.1
COORDINATES: similar to AA sequence:RefSeq:WP_006487408.1
COORDINATES: similar to AA sequence:RefSeq:WP_006487402.1
COORDINATES: similar to AA sequence:RefSeq:WP_006487383.1
COORDINATES: similar to AA sequence:RefSeq:WP_006487376.1
COORDINATES: similar to AA sequence:RefSeq:WP_006493945.1
COORDINATES: similar to AA sequence:RefSeq:WP_006487420.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006487354.1
COORDINATES: similar to AA sequence:RefSeq:WP_006487449.1
GO:0004252 - serine-type endopeptidase activity [Evidence IEA]
GO:0009306 - protein secretion [Evidence IEA]; GO:0006465 - signal peptide processing [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006487379.1
type-F conjugative transfer system protein TraW
COORDINATES: similar to AA sequence:RefSeq:WP_006487375.1
conjugal transfer pilus assembly protein TraU
COORDINATES: similar to AA sequence:RefSeq:WP_006487447.1
type-F conjugative transfer system pilin assembly protein TrbC
COORDINATES: similar to AA sequence:RefSeq:WP_006493944.1
COORDINATES: similar to AA sequence:RefSeq:WP_006487394.1
COORDINATES: similar to AA sequence:RefSeq:WP_006487422.1
COORDINATES: similar to AA sequence:RefSeq:WP_006493941.1
COORDINATES: similar to AA sequence:RefSeq:WP_006493947.1
COORDINATES: similar to AA sequence:RefSeq:WP_006487410.1
COORDINATES: similar to AA sequence:RefSeq:WP_006487388.1
COORDINATES: similar to AA sequence:RefSeq:WP_006487377.1
COORDINATES: similar to AA sequence:RefSeq:WP_006487369.1
COORDINATES: similar to AA sequence:RefSeq:WP_006487442.1