Lactiplantibacillus paraplantarum strain FL-8 plasmid unnamed1, complete sequence.
Bacteria; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Lactiplantibacillus.
Comparative genomics and fermentation flavor characterization of five lactic acid bacteria reveal flavor biosynthesis metabolic pathways in fermented muskmelon puree
Submitted (22-FEB-2023) College of Food Science and Nutritional Engineering, China Agricultural University, No. 17, Tsinghua East Road, Haidian District, Beijing 100083, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP118746.1.\nBacteria and source DNA available from Jihong Wu lab.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 31-OCT-2022\nAssembly Method :: Canu v. v1.5\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 460.0x\nSequencing Technology :: Oxford Nanopore MinION; Illumina NovaSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/08/2023 16:01:15\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,040\nCDSs (total) :: 2,953\nGenes (coding) :: 2,935\nCDSs (with protein) :: 2,935\nGenes (RNA) :: 87\nrRNAs :: 6, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 6, 5, 5 (5S, 16S, 23S)\ntRNAs :: 67\nncRNAs :: 4\nPseudo Genes (total) :: 18\nCDSs (without protein) :: 18\nPseudo Genes (ambiguous residues) :: 0 of 18\nPseudo Genes (frameshifted) :: 10 of 18\nPseudo Genes (incomplete) :: 10 of 18\nPseudo Genes (internal stop) :: 3 of 18\nPseudo Genes (multiple problems) :: 5 of 18\nCRISPR Arrays :: 2\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_003639769.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
DNA starvation/stationary phase protection protein
COORDINATES: similar to AA sequence:RefSeq:WP_053338758.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_003646092.1
COORDINATES: similar to AA sequence:RefSeq:WP_010620841.1
COORDINATES: similar to AA sequence:RefSeq:WP_010774077.1
COORDINATES: similar to AA sequence:RefSeq:WP_010625626.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family
COORDINATES: similar to AA sequence:RefSeq:WP_014271901.1