Bactrocera tryoni mitochondrion, complete genome.
type: Entry
definition: Bactrocera tryoni mitochondrion, complete genome.
sequence version: NC_014611.1
sequence date: 2023-04-03
sequence: sequence
division: INV
label: NC_014611.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA927338
keyword: RefSeq
source: mitochondrion Bactrocera tryoni (Queensland fruit fly)
organism: Bactrocera tryoni
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Tephritoidea; Tephritidae; Bactrocera; Bactrocera.
reference: 1
references: 20723608
reference: 2
reference: 3
comment: REVIEWED REFSEQ: This record has been curated by NCBI staff. The\nreference sequence is identical to HQ130030.\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000819
sequence length: 15925
topology: circular
so has quality: SO_0000988
location: 1..15925
location: region:1-15925:1
RO_0002162: 59916

NC_014611
type: RefSeq
SIO_000068: refseq

PRJNA927338
type: BioProject
SIO_000068: bioproject

1
title: Domestication of olive fly through a multi-regional host shift to cultivated olives: Comparative dating using complete mitochondrial genomes
author: Nardi, F.
author: Carapelli, A.
author: Boore, J.L.
author: Roderick, G.K.
author: Dallai, R.
author: Frati, F.
journal: Mol. Phylogenet. Evol. (2010) In press
pubmed: 20723608
comments: Publication Status: Available-Online prior to print

20723608
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
journal: Submitted (19-OCT-2010) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA

3
title: Direct Submission
author: Nardi, F.
author: Carapelli, A.
author: Boore, J.L.
author: Roderick, G.K.
author: Dallai, R.
author: Fati, F.
journal: Submitted (12-AUG-2010) Evolutionary Biology, University of Siena, via Aldo Moro 2, Siena 53100, Italy

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15925:1
position: 15925
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-15925:1:source
so part of: sequence
organism: Bactrocera tryoni
organelle: mitochondrion
mol type: genomic DNA
common: Queensland fruit fly

59916
type: Taxonomy
SIO_000068: taxonomy

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 59916
product: tRNA-Ile
so part of: sequence
location: 1..66
location: region:1-66:1
so has part: feature:1-66:1:region

position:66:1
position: 66
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-66:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 59916
product: tRNA-Gln
so part of: sequence
location: complement(64..132)
location: region:64-132:-1
so has part: feature:64-132:-1:region

position:64:-1
position: 64
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:132:-1
position: 132
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:64-132:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 59916
product: tRNA-Met
so part of: sequence
location: 204..272
location: region:204-272:1
so has part: feature:204-272:1:region

position:204:1
position: 204
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:272:1
position: 272
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:204-272:1:region

ND2
type: Gene
subclass of: SO_0000704
RO_0002162: 59916
gene: ND2
so part of: sequence
location: 273..1295
location: region:273-1295:1
so has part: feature:273-1295:1:exon
subclass of: SO_0000010

9838818
type: Gene
SIO_000068: ncbigene

position:273:1
position: 273
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1295:1
position: 1295
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:273-1295:1:exon

ND2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59916
gene: ND2
codon start: 1
transl table: 5
product: NADH dehydrogenase subunit 2
translation: MFNNSAKIMFFFILMTGTLITVSSNSWLGAWMGLEINLLSFIPLMNSNNLTSTEASLKYFLTQAMASAVLLFAIMLMYLNNYPITQDNSSYSNLIIISSLLLKSGAAPFHFWFPNVMEGLSWMNALTLMTWQKIAPLMLISYTTQNTFIFVAIIASTITGSLGGLNQTSLRKLMAFSSINHLGWMLAAMQANESMWCIYFSFYTFLSFSLTFMFNNFKMFHINQLFNSFFNSKILKFILFLNLLSLGGLPPFIGFLPKWLVIQLLVLKSQYMLMTIMTVMTLITLFFYLRLCFAAFMLNYYENNWTIDMVINNISFKLMLVLSFISTFSLILVSTVYLFL
SIO_010081: ND2
subclass of: SO_0000673
so part of: ND2
location: 273..1295
location: region:273-1295:1
so has part: feature:273-1295:1:exon

YP_003934995.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:273-1295:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 59916
product: tRNA-Trp
so part of: sequence
location: 1308..1376
location: region:1308-1376:1
so has part: feature:1308-1376:1:region

position:1308:1
position: 1308
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1376:1
position: 1376
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1308-1376:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 59916
product: tRNA-Cys
so part of: sequence
location: complement(1369..1431)
location: region:1369-1431:-1
so has part: feature:1369-1431:-1:region

position:1369:-1
position: 1369
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1431:-1
position: 1431
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1369-1431:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 59916
product: tRNA-Tyr
so part of: sequence
location: complement(1462..1528)
location: region:1462-1528:-1
so has part: feature:1462-1528:-1:region

position:1462:-1
position: 1462
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1528:-1
position: 1528
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1462-1528:-1:region

COX1
type: Gene
subclass of: SO_0000704
RO_0002162: 59916
gene: COX1
so part of: sequence
location: <1527..3061
location: region:1527-3061:1
so has part: feature:1527-3061:1:exon
subclass of: SO_0000010

9838806
type: Gene
SIO_000068: ncbigene

position:1527:1
position: 1527
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:3061:1
position: 3061
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1527-3061:1:exon

COX1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59916
gene: COX1
note: start codon not determined; TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:3060..3061,aa:TERM)
transl table: 5
product: cytochrome c oxidase subunit I
translation: SRQWLFSTNHKDIGTLYFIFGAWAGMVGTSLSILVRAELGHPGALIGDDQIYNVIVTAHAFVMIFFMVMPIMIGGFGNWLVPLMLGAPDMAFPRMNNMSFWLLPPSLTLLLVSSMVENGAGTGWTVYPPLSSVIAHGGASVDLAIFSLHLAGISSILGAVNFITTVINMRSTGISFDRMPLFVWAVVLTALLLLLSLPVLAGAITMLLTDRNLNTSFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISHIISQESGKKETFGSLGMIYAMMAIGLLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAVPTGIKIFSWLATLHGTQLNYSPAMLWALGFVFLFTVGGLTGVVLANSSVDIILHDTYYVVAHFHYVLSMGAVFAIMAGFVHWYPLFTGLVLNPKWLKSQFIIMFIGVNLTFFPQHFLGLAGMPRRYSDYPDAYTTWNVVSTIGSSISLLGILFFLFIIWESLVTQRQVVYPMQLSSSIEWLQNTPPAEHSYSELPLLTN
SIO_010081: COX1
subclass of: SO_0000673
so part of: COX1
location: <1527..3061
location: region:1527-3061:1
so has part: feature:1527-3061:1:exon

YP_003934996.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1527-3061:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 59916
product: tRNA-Leu
codon recognized: UUR
so part of: sequence
location: 3062..3127
location: region:3062-3127:1
so has part: feature:3062-3127:1:region

position:3062:1
position: 3062
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3127:1
position: 3127
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3062-3127:1:region

COX2
type: Gene
subclass of: SO_0000704
RO_0002162: 59916
gene: COX2
so part of: sequence
location: 3132..3821
location: region:3132-3821:1
so has part: feature:3132-3821:1:exon
subclass of: SO_0000010

9838807
type: Gene
SIO_000068: ncbigene

position:3132:1
position: 3132
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3821:1
position: 3821
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3132-3821:1:exon

COX2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59916
gene: COX2
codon start: 1
transl table: 5
product: cytochrome c oxidase subunit II
translation: MTTWAALGLQDSASPLMEQLTFFHDHALMILVMITTLVGYLMFMLFFNSYTNRNLLHGQTIEMIWTILPAIVLLFIALPSLRLLYLLDEINEPSVTLKAIGHQWYWSYEYSDFMNVEFDSYMIPTNELTTDGFRLLDVDNRVVLPMNSQIRILVTAADVIHSWTVPALGVKVDGTPGRLNQTNFLMNRPGLFYGQCSEICGANHSFMPIVIESLPVNHFIKWVTSSTNS
SIO_010081: COX2
subclass of: SO_0000673
so part of: COX2
location: 3132..3821
location: region:3132-3821:1
so has part: feature:3132-3821:1:exon

YP_003934997.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3132-3821:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 59916
product: tRNA-Lys
so part of: sequence
location: 3826..3896
location: region:3826-3896:1
so has part: feature:3826-3896:1:region

position:3826:1
position: 3826
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3896:1
position: 3896
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3826-3896:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 59916
product: tRNA-Asp
so part of: sequence
location: 3899..3965
location: region:3899-3965:1
so has part: feature:3899-3965:1:region

position:3899:1
position: 3899
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3965:1
position: 3965
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3899-3965:1:region

ATP8
type: Gene
subclass of: SO_0000704
RO_0002162: 59916
gene: ATP8
so part of: sequence
location: 3966..4127
location: region:3966-4127:1
so has part: feature:3966-4127:1:exon
subclass of: SO_0000010

9838808
type: Gene
SIO_000068: ncbigene

position:3966:1
position: 3966
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4127:1
position: 4127
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3966-4127:1:exon

ATP8
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59916
gene: ATP8
codon start: 1
transl table: 5
product: ATP synthase F0 subunit 8
translation: MPQMAPIGWLSLFIIFSITFILFSMMNYYSVIPKTPKSEISNKYSTTSLNWKW
SIO_010081: ATP8
subclass of: SO_0000673
so part of: ATP8
location: 3966..4127
location: region:3966-4127:1
so has part: feature:3966-4127:1:exon

YP_003934998.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3966-4127:1:exon

ATP6
type: Gene
subclass of: SO_0000704
RO_0002162: 59916
gene: ATP6
so part of: sequence
location: 4121..4798
location: region:4121-4798:1
so has part: feature:4121-4798:1:exon
subclass of: SO_0000010

9838809
type: Gene
SIO_000068: ncbigene

position:4121:1
position: 4121
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4798:1
position: 4798
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4121-4798:1:exon

ATP6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59916
gene: ATP6
codon start: 1
transl table: 5
product: ATP synthase F0 subunit 6
translation: MMTNLFSVFDPSSSIFNLSLNWMSTFLGLLLIPSAYWLMPSRWHIFWNSILLTLHKEFKTLLGPSGHSGSTFIFVSLFSLILFNNFMGLFPYIFTSTSHLTLTLTLALPLWLCFMLYGWINHTQHMFAHLVPQGTPAVLMPFMVCIETISNIIRPGTLAVRLAANMIAGHLLLTLLGNTGPSLSYAIVSLLLIGQIALLVLESAVAIIQSYVFAVLSTLYSSEVN
SIO_010081: ATP6
subclass of: SO_0000673
so part of: ATP6
location: 4121..4798
location: region:4121-4798:1
so has part: feature:4121-4798:1:exon

YP_003934999.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4121-4798:1:exon

COX3
type: Gene
subclass of: SO_0000704
RO_0002162: 59916
gene: COX3
so part of: sequence
location: 4798..5586
location: region:4798-5586:1
so has part: feature:4798-5586:1:exon
subclass of: SO_0000010

9838810
type: Gene
SIO_000068: ncbigene

position:5586:1
position: 5586
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4798-5586:1:exon

COX3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59916
gene: COX3
codon start: 1
transl table: 5
product: cytochrome c oxidase subunit III
translation: MSTHSNHPFHLVDYSPWPLTGAIGAMTSVSGLVKWFHQYDISLFALGNIITILTVYQWWRDVSREGTFQGLHTLPVTLGLRWGMILFILSEVLFFVSFFWAFFHSSLSPAIELGAMWPPAGIQPFNPFQIPLLNTAILLSSGVTVTWAHHSLMEGNHSQATQGLFFTVLLGVYFTILQAYEYIEAPFTIADSVYGSTFFMATGFHGIHVLIGTTFLLVCLIRHLNNHFSKTHHFGFEAAAWYWHFVDIVWLFLYISIYWWGG
SIO_010081: COX3
subclass of: SO_0000673
so part of: COX3
location: 4798..5586
location: region:4798-5586:1
so has part: feature:4798-5586:1:exon

YP_003935000.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4798-5586:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 59916
product: tRNA-Gly
so part of: sequence
location: 5596..5660
location: region:5596-5660:1
so has part: feature:5596-5660:1:region

position:5596:1
position: 5596
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5660:1
position: 5660
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5596-5660:1:region

ND3
type: Gene
subclass of: SO_0000704
RO_0002162: 59916
gene: ND3
so part of: sequence
location: 5661..6012
location: region:5661-6012:1
so has part: feature:5661-6012:1:exon
subclass of: SO_0000010

9838811
type: Gene
SIO_000068: ncbigene

position:5661:1
position: 5661
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6012:1
position: 6012
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5661-6012:1:exon

ND3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59916
gene: ND3
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:6012,aa:TERM)
transl table: 5
product: NADH dehydrogenase subunit 3
translation: MFSIAIMASILIIITSVVMTLASILSKKALTDREKCSPFECGFDPKSSSRLPFSLRFFLITIIFLIFDVEIALILPMILIISISNITMWATTSIVFIIILIIGLYHEWNQGMLNWSN
SIO_010081: ND3
subclass of: SO_0000673
so part of: ND3
location: 5661..6012
location: region:5661-6012:1
so has part: feature:5661-6012:1:exon

YP_003935001.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5661-6012:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 59916
product: tRNA-Ala
so part of: sequence
location: 6013..6077
location: region:6013-6077:1
so has part: feature:6013-6077:1:region

position:6013:1
position: 6013
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6077:1
position: 6077
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6013-6077:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 59916
product: tRNA-Arg
so part of: sequence
location: 6085..6148
location: region:6085-6148:1
so has part: feature:6085-6148:1:region

position:6085:1
position: 6085
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6148:1
position: 6148
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6085-6148:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 59916
product: tRNA-Asn
so part of: sequence
location: 6182..6246
location: region:6182-6246:1
so has part: feature:6182-6246:1:region

position:6182:1
position: 6182
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6246:1
position: 6246
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6182-6246:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 59916
product: tRNA-Ser
codon recognized: AGN
so part of: sequence
location: 6247..6314
location: region:6247-6314:1
so has part: feature:6247-6314:1:region

position:6247:1
position: 6247
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6314:1
position: 6314
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6247-6314:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 59916
product: tRNA-Glu
so part of: sequence
location: 6315..6381
location: region:6315-6381:1
so has part: feature:6315-6381:1:region

position:6315:1
position: 6315
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6381:1
position: 6381
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6315-6381:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 59916
product: tRNA-Phe
so part of: sequence
location: complement(6400..6464)
location: region:6400-6464:-1
so has part: feature:6400-6464:-1:region

position:6400:-1
position: 6400
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6464:-1
position: 6464
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6400-6464:-1:region

ND5
type: Gene
subclass of: SO_0000704
RO_0002162: 59916
gene: ND5
so part of: sequence
location: complement(6465..8184)
location: region:6465-8184:-1
so has part: feature:6465-8184:-1:exon
subclass of: SO_0000010

9838812
type: Gene
SIO_000068: ncbigene

position:6465:-1
position: 6465
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8184:-1
position: 8184
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6465-8184:-1:exon

ND5
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59916
gene: ND5
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:complement(6465),aa:TERM)
transl table: 5
product: NADH dehydrogenase subunit 5
translation: MCSISFLILITISISFFSSSLVFLLNDYSLFLEWEVVSLNSTSIVMTFLFDWMSLLFMSFVLLIASLVIYYSKEYMSGDMNINRFIMLVLMFVLSMMLLIISPNLISILLGWDGLGLVSYCLVIYFQNVKSYNAGMLTALSNRIGDVAFLLAIAWMLNYGSWNYIFYLESMKDSVEMEIIGALVMLAAMTKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFNILLSGSWLGDLLLLLSGLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGFYKLAFFHLLTHALFKALLFMCAGAIIHNMNNSQDIRLMGGLGVYMPLTSGCFNVANLALCGMPFLAGFYSKDLILEVVSLSYINVFSFFLYFFSTGLTVCYSFRLVYYSMTGELNCGSLNMLSDEGWVMLRGMSGLLIMSIVGGSMLSWLIFPTPYMVCLPSHLKLLTLFVCVVGGVLGYLISNVSLFYFNKSLHNYLASYFSGSMWFMSYISTYGIINYPLVLGMSVCKSFDQGWSEFLGGQNLYNELVKYSQYVSIMHNNNLKIYLLLFVLWIIFLFSFFLIF
SIO_010081: ND5
subclass of: SO_0000673
so part of: ND5
location: complement(6465..8184)
location: region:6465-8184:-1
so has part: feature:6465-8184:-1:exon

YP_003935002.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6465-8184:-1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 59916
product: tRNA-His
so part of: sequence
location: complement(8200..8265)
location: region:8200-8265:-1
so has part: feature:8200-8265:-1:region

position:8200:-1
position: 8200
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8265:-1
position: 8265
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8200-8265:-1:region

ND4
type: Gene
subclass of: SO_0000704
RO_0002162: 59916
gene: ND4
so part of: sequence
location: complement(8266..9606)
location: region:8266-9606:-1
so has part: feature:8266-9606:-1:exon
subclass of: SO_0000010

9838813
type: Gene
SIO_000068: ncbigene

position:8266:-1
position: 8266
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9606:-1
position: 9606
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8266-9606:-1:exon

ND4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59916
gene: ND4
codon start: 1
transl table: 5
product: NADH dehydrogenase subunit 4
translation: MLKLIFMMLFISPICFMNGLFWMVQNLLFIVTFVFIALNYCTNYFVNISYFLGFDVISYGLILLSFWICTLMLSASESVYKYNNYKNLFLFNILILLIFLVLTFSSMNLFMFYLFFESSLIPTLFLILGWGYQPERLQAGVYLLFYTLLVSLPMLVGIFYLYNNLNTMNFYLLSNYMFNYDLLYLSLILAFLVKMPMFLVHLWLPKAHVEAPVSGSMILAGIMLKLGGYGLLRVFSFLQLSGIKYNYVWVSISLVGGVLISLVCLRQTDLKALIAYSSVAHMGIVLGGLMTLTYWGLCGSYTLMIAHGLCSSGLFCLANITYERLGSRSLLINKGLLNFMPSMTLWWFLLSACNMAAPPSLNLLGEISLLNSIVSWSWVTMISLSLLSFFSAAYTLYLYAYSQHGKIFSGAYSFSGGKVREFFLLFLHWFPLNLLILKSDICLFWL
SIO_010081: ND4
subclass of: SO_0000673
so part of: ND4
location: complement(8266..9606)
location: region:8266-9606:-1
so has part: feature:8266-9606:-1:exon

YP_003935003.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8266-9606:-1:exon

ND4L
type: Gene
subclass of: SO_0000704
RO_0002162: 59916
gene: ND4L
so part of: sequence
location: complement(9600..9896)
location: region:9600-9896:-1
so has part: feature:9600-9896:-1:exon
subclass of: SO_0000010

9838814
type: Gene
SIO_000068: ncbigene

position:9600:-1
position: 9600
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9896:-1
position: 9896
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9600-9896:-1:exon

ND4L
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59916
gene: ND4L
codon start: 1
transl table: 5
product: NADH dehydrogenase subunit 4L
translation: MLMSLYWGLPCFLFLMGIFVFVSNRKHLLSMLLSLEYIVLSLFFLLFIYLNLMDYSSFFSMMFLTFSVCEGALGLSILVSMIRTHGNDYFQSFNVLQC
SIO_010081: ND4L
subclass of: SO_0000673
so part of: ND4L
location: complement(9600..9896)
location: region:9600-9896:-1
so has part: feature:9600-9896:-1:exon

YP_003935004.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9600-9896:-1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 59916
product: tRNA-Thr
so part of: sequence
location: 9899..9963
location: region:9899-9963:1
so has part: feature:9899-9963:1:region

position:9899:1
position: 9899
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9963:1
position: 9963
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9899-9963:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 59916
product: tRNA-Pro
so part of: sequence
location: complement(9964..10029)
location: region:9964-10029:-1
so has part: feature:9964-10029:-1:region

position:9964:-1
position: 9964
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10029:-1
position: 10029
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9964-10029:-1:region

ND6
type: Gene
subclass of: SO_0000704
RO_0002162: 59916
gene: ND6
so part of: sequence
location: 10032..10556
location: region:10032-10556:1
so has part: feature:10032-10556:1:exon
subclass of: SO_0000010

9838815
type: Gene
SIO_000068: ncbigene

position:10032:1
position: 10032
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10556:1
position: 10556
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10032-10556:1:exon

ND6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59916
gene: ND6
codon start: 1
transl table: 5
product: NADH dehydrogenase subunit 6
translation: MMQLFLYSSTLVSSLIFIQMNHPLAMGLMLLIQTLQICLITGLMAKSFWFSYTLFLIFLGGMLVLFIYVTSLASNEMFSLSMKLTTICMMIILTLTMIAMFTDKLSTSPFIENLEMQPLLNFNLTVSENSLNLHKLYNYPTNFITILLMNYLLVTLIAVVKITKLFYGPLRQMN
SIO_010081: ND6
subclass of: SO_0000673
so part of: ND6
location: 10032..10556
location: region:10032-10556:1
so has part: feature:10032-10556:1:exon

YP_003935005.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10032-10556:1:exon

CYTB
type: Gene
subclass of: SO_0000704
RO_0002162: 59916
gene: CYTB
so part of: sequence
location: 10556..11690
location: region:10556-11690:1
so has part: feature:10556-11690:1:exon
subclass of: SO_0000010

9838816
type: Gene
SIO_000068: ncbigene

position:11690:1
position: 11690
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10556-11690:1:exon

CYTB
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59916
gene: CYTB
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:11690,aa:TERM)
transl table: 5
product: cytochrome b
translation: MNKPLRTQHPLFKIANNALVDLPAPINISAWWNFGSLLGLCLIIQILTGLFLAMHYTADINLAFNSVNHICRDVNYGWLLRTLHANGASFFFICIYLHVGRGIYYGSYLFTPTWLVGVLILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGIDLVQWVWGGFAVDNATLTRFFTFHFILPFIVLAMTLIHLLFLHQTGSNNPIGLNSNIDKIPFHPYFSYKDIVGFVIMIAALILLTLINPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILAILPFYHLSKFRGIQFYPINKILFWTMVVTVILLTWIGARPVEEPYVLVGQILTVIYFLYYIINPLVNKWWDNLIN
SIO_010081: CYTB
subclass of: SO_0000673
so part of: CYTB
location: 10556..11690
location: region:10556-11690:1
so has part: feature:10556-11690:1:exon

YP_003935006.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10556-11690:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 59916
product: tRNA-Ser
codon recognized: UCN
so part of: sequence
location: 11691..11757
location: region:11691-11757:1
so has part: feature:11691-11757:1:region

position:11691:1
position: 11691
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11757:1
position: 11757
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11691-11757:1:region

ND1
type: Gene
subclass of: SO_0000704
RO_0002162: 59916
gene: ND1
so part of: sequence
location: complement(11773..12712)
location: region:11773-12712:-1
so has part: feature:11773-12712:-1:exon
subclass of: SO_0000010

9838817
type: Gene
SIO_000068: ncbigene

position:11773:-1
position: 11773
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12712:-1
position: 12712
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11773-12712:-1:exon

ND1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59916
gene: ND1
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:complement(11773),aa:TERM)
transl table: 5
product: NADH dehydrogenase subunit 1
translation: MEFILSIIGSLILVICVLVSVAFLTLLERKVLGYIQIRKGPNKVGLMGIPQPFCDAIKLFTKEQTYPLLSNYISYYFSPIFSLFLSLVAWLCIPLFVKLFSFNLGLLFFLCCTSLGVYTVMIAGWSSNSNYALLGGLRAVAQTISYEVSMALVLLSFVFLIGSYNILDFFYYQKTIWFLVILFPISLVWFCICLAETNRTPFDFAEGESELVSGFNIEYSSGGFALIFMAEYASILFMSMLFCVIFLGCDVFNIMFYIKLTFISFVFIWARGTLPRFRYDKLMYLAWKSFLPFSLNFLLFIIGLKLLLIYYMW
SIO_010081: ND1
subclass of: SO_0000673
so part of: ND1
location: complement(11773..12712)
location: region:11773-12712:-1
so has part: feature:11773-12712:-1:exon

YP_003935007.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11773-12712:-1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 59916
product: tRNA-Leu
codon recognized: CUN
so part of: sequence
location: complement(12723..12787)
location: region:12723-12787:-1
so has part: feature:12723-12787:-1:region

position:12723:-1
position: 12723
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12787:-1
position: 12787
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12723-12787:-1:region

rRNA
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 59916
product: l-rRNA
note: 16S ribosomal RNA
so part of: sequence
location: complement(12788..14113)
location: region:12788-14113:-1
so has part: feature:12788-14113:-1:region

position:12788:-1
position: 12788
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14113:-1
position: 14113
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12788-14113:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 59916
product: tRNA-Val
so part of: sequence
location: complement(14114..14185)
location: region:14114-14185:-1
so has part: feature:14114-14185:-1:region

position:14114:-1
position: 14114
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14185:-1
position: 14185
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14114-14185:-1:region

rRNA
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 59916
product: s-rRNA
note: 12S ribosomal RNA
so part of: sequence
location: complement(14186..14974)
location: region:14186-14974:-1
so has part: feature:14186-14974:-1:region

position:14186:-1
position: 14186
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14974:-1
position: 14974
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14186-14974:-1:region

rep_origin
type: Replication Origin
subclass of: SO_0000296
RO_0002162: 59916
note: A+T rich region
direction: BOTH
so part of: sequence
location: 14975..15925
location: region:14975-15925:1
so has part: feature:14975-15925:1:region

position:14975:1
position: 14975
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14975-15925:1:region