Ficedula albicollis isolate OC2 linkage group LG35, FicAlb1.5, whole genome shotgun sequence.
type: Entry
definition: Ficedula albicollis isolate OC2 linkage group LG35, FicAlb1.5, whole genome shotgun sequence.
sequence version: NC_021702.1
sequence date: 2016-04-20
sequence: sequence
division: CON
label: NC_021702.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA208061
dblink: SAMN02981387
keyword: WGS
keyword: RefSeq
source: Ficedula albicollis (collared flycatcher)
organism: Ficedula albicollis
taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Muscicapidae; Ficedula.
reference: 1
references: 23103876
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCM002019.1.\nAssembly name: FicAlb1.5\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by Uppsala University on 2013/06/24.\nThe original whole-genome shotgun project has the accession\nAGTO00000000.2.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Uppsala University\nAssembly Method :: SOAPdenovo v. 1.05\nAssembly Name :: FicAlb1.5\nGenome Coverage :: 60.0x\nSequencing Technology :: Illumina GAII; Illumina HiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Status :: Full annotation\nAnnotation Version :: Ficedula albicollis Annotation\n Release 101\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 7.0\nAnnotation Method :: Best-placed RefSeq; Gnomon\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\n##Genome-Annotation-Data-END##

sequence
subclass of: SO_0000018
sequence length: 248039
topology: linear
so has quality: SO_0000987
location: 1..248039
location: region:1-248039:1
RO_0002162: 59894

NC_021702
type: RefSeq
SIO_000068: refseq

PRJNA208061
type: BioProject
SIO_000068: bioproject

SAMN02981387
type: BioSample
SIO_000068: biosample

1
title: The genomic landscape of species divergence in Ficedula flycatchers
author: Ellegren, H.
author: Smeds, L.
author: Burri, R.
author: Olason, P.I.
author: Backstrom, N.
author: Kawakami, T.
author: Kunstner, A.
author: Makinen, H.
author: Nadachowska-Brzyska, K.
author: Qvarnstrom, A.
author: Uebbing, S.
author: Wolf, J.B.
journal: Nature
volume: 491
issue: 7426
pages: 756-760
year: 2012
pubmed: 23103876

23103876
type: PubMed
SIO_000068: pubmed

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:248039:1
position: 248039
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-248039:1:source
so part of: sequence
organism: Ficedula albicollis
mol type: genomic DNA
isolate: OC2
sex: male
country: Sweden: Oland
collection date: 2009
linkage group: LG35

59894
type: Taxonomy
SIO_000068: taxonomy

LOC101821225
type: Gene
subclass of: SO_0000704
RO_0002162: 59894
gene: LOC101821225
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 10584..>11989
location: region:10584-11989:1
so has part: feature:10584-11989:1:exon
subclass of: SO_0000010

101821225
type: Gene
SIO_000068: ncbigene

position:10584:1
position: 10584
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11989:1
position: 11989
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10584-11989:1:exon

LOC101821225
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59894
gene: LOC101821225
product: leucine-rich repeat and fibronectin type III domain-containing protein 1-like protein
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 22 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_005061325.1
SIO_010081: LOC101821225
subclass of: SO_0000673
so part of: LOC101821225
location: 10584..>11989
location: region:10584-11989:1
so has part: feature:10584-11989:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:10584-11989:1:exon

LOC101821225
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59894
gene: LOC101821225
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: leucine-rich repeat and fibronectin type III domain-containing protein 1-like protein
translation: MENLLLPLLLLLLFFFFFATTTTNAPPCPKRCSCQNLSPSFTILCTKTGLLFVPAGIDRRTAELRLMDNFITVLRKRDFANMTQLIHLTLSRNTISQIMPYAFSDLKGLHALHLDSNRLTAINEEHFKGLINLRHLILSNNQLSFISPRSLDDFLETIEDLDLSYNNLVDVPWGTVAKLSNVNTVSLDHNLIEFVPEGIFSNLHKLARLDMTSNKLKKIPPDPLFSRIPVYAKSKGSPLTSLVLSFGGNPLHCNCELVWLRRLTREDDLETCASPPELMGKYFWSIREEEFVCEPPMITHRTPKLVTAAGQSASLKCKAVGDPDPYVRWIAPDGKLVANTTRTVSYQNGTLDILEAALGDQGTFTCIASNAAGESTAPVEFRVVPDGNGTECEEEEGKKTATARPEPSDILISAKSSFSND
SIO_010081: LOC101821225
subclass of: SO_0000673
so part of: LOC101821225
location: 10727..>11989
location: region:10727-11989:1
so has part: feature:10727-11989:1:exon

XP_005061382.1
type: Protein
SIO_000068: ncbiprotein

position:10727:1
position: 10727
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10727-11989:1:exon

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 59894
estimated length: 5000
gap type: between scaffolds
so part of: sequence
location: 14670..19669
location: region:14670-19669:1
so has part: feature:14670-19669:1:region

position:14670:1
position: 14670
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19669:1
position: 19669
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14670-19669:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 59894
estimated length: 5000
gap type: between scaffolds
so part of: sequence
location: 58474..63473
location: region:58474-63473:1
so has part: feature:58474-63473:1:region

position:58474:1
position: 58474
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:63473:1
position: 63473
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:58474-63473:1:region

LOC101821634
type: Gene
subclass of: SO_0000704
RO_0002162: 59894
gene: LOC101821634
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(<124944..154117)
location: region:124944-154117:-1
so has part: feature:124944-154117:-1:exon
subclass of: SO_0000010

101821634
type: Gene
SIO_000068: ncbigene

position:124944:-1
position: 124944
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:154117:-1
position: 154117
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:124944-154117:-1:exon

LOC101821634
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59894
gene: LOC101821634
product: signal-induced proliferation-associated 1-like protein 3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 87% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_016304920.1
SIO_010081: LOC101821634
subclass of: SO_0000673
so part of: LOC101821634
location: complement(join(<124944..125103,127349..127623,128759..128851,128908..129460,130416..130573,131217..131320,132353..132527,133211..133288,133526..133660,154070..154117))
location: region:124944-154117:-1
so has part: feature:154070-154117:-1:exon
so has part: feature:133526-133660:-1:exon
so has part: feature:133211-133288:-1:exon
so has part: feature:132353-132527:-1:exon
so has part: feature:131217-131320:-1:exon
so has part: feature:130416-130573:-1:exon
so has part: feature:128908-129460:-1:exon
so has part: feature:128759-128851:-1:exon
so has part: feature:127349-127623:-1:exon
so has part: feature:124944-125103:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:154070-154117:-1:exon

position:154070:-1
position: 154070
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:133526-133660:-1:exon

position:133526:-1
position: 133526
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:133660:-1
position: 133660
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:133211-133288:-1:exon

position:133211:-1
position: 133211
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:133288:-1
position: 133288
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:132353-132527:-1:exon

position:132353:-1
position: 132353
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:132527:-1
position: 132527
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:131217-131320:-1:exon

position:131217:-1
position: 131217
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:131320:-1
position: 131320
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:130416-130573:-1:exon

position:130416:-1
position: 130416
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:130573:-1
position: 130573
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:128908-129460:-1:exon

position:128908:-1
position: 128908
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:129460:-1
position: 129460
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:128759-128851:-1:exon

position:128759:-1
position: 128759
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:128851:-1
position: 128851
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:127349-127623:-1:exon

position:127349:-1
position: 127349
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:127623:-1
position: 127623
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:124944-125103:-1:exon

position:125103:-1
position: 125103
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC101821634
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59894
gene: LOC101821634
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: signal-induced proliferation-associated 1-like protein 3
translation: MTTPLTAMMMMKTKTMLVTLRGSILEDAVPSTSKAGSLRGIPLREILEFVVPELNTHCLRLLNTHCLRLALATPKVTEQLLKLDEQGLCRRHKVGILYCKAGQSSEEEMYNNEAAGPALDEFLTLLGEKVSLKSFTKYAAQLDTKTDSTGTHSLYTTYQDYEIMFHVSTMLPYTPNNRQQLLRKRHIGNDIVTIIFQEPGALPFTPQNIRSHFQHVFIIVRAHQPCSDNVSYSVAVTRSKDVPPFGPPVPPAGVTFRRSDLFRAFLLAKAINAENAAHKSHKFRAMATRTRQEYLRDLAENYVTNTPLDTAGKFNLISLASKKKEKSKARPLAELESAGAVSWRVSALDFGRGGAEIPCVLGISKEFVVLVDLAAKEVVFNCFTGDVIGWSAEGAALRIYHGRGDLVSVRAGAAPGAPPGAAPGAEGAAAEGAEAAAEEIREIVQRLKATTPGCATVDMTLRRNGLGQLGFHVHPDGSVAEVEEYGFAWQAGLRRGSRLLEVCKVAAVALSHEQMIDLLRTSVTVTVAIVPPHEDGTPRRGWSESLASVPAESDPFPAPFPAPLPLRAPFRSGPGWHRAGAKRPPGIGGTGGT
SIO_010081: LOC101821634
subclass of: SO_0000673
so part of: LOC101821634
location: complement(join(<124944..125103,127349..127623,128759..128851,128908..129460,130416..130573,131217..131320,132353..132527,133211..133288,133526..133660,154070..154117))
location: region:124944-154117:-1
so has part: feature:154070-154117:-1:exon
so has part: feature:133526-133660:-1:exon
so has part: feature:133211-133288:-1:exon
so has part: feature:132353-132527:-1:exon
so has part: feature:131217-131320:-1:exon
so has part: feature:130416-130573:-1:exon
so has part: feature:128908-129460:-1:exon
so has part: feature:128759-128851:-1:exon
so has part: feature:127349-127623:-1:exon
so has part: feature:124944-125103:-1:exon

XP_016160406.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:154070-154117:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:133526-133660:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:133211-133288:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:132353-132527:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:131217-131320:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:130416-130573:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:128908-129460:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:128759-128851:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:127349-127623:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:124944-125103:-1:exon

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 59894
estimated length: 5000
gap type: between scaffolds
so part of: sequence
location: 149014..154013
location: region:149014-154013:1
so has part: feature:149014-154013:1:region

position:149014:1
position: 149014
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:154013:1
position: 154013
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:149014-154013:1:region

SPTBN4
type: Gene
subclass of: SO_0000704
RO_0002162: 59894
gene: SPTBN4
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: <157030..203225
location: region:157030-203225:1
so has part: feature:157030-203225:1:exon
subclass of: SO_0000010

101822024
type: Gene
SIO_000068: ncbigene

position:157030:1
position: 157030
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:203225:1
position: 203225
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:157030-203225:1:exon

SPTBN4
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59894
gene: SPTBN4
product: spectrin beta, non-erythrocytic 4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 93% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_016304921.1
SIO_010081: SPTBN4
subclass of: SO_0000673
so part of: SPTBN4
location: join(<157030..157263,159141..159314,159510..159601,160687..160767,160866..160981,162105..162217,162943..163108,165678..165817,166530..166688,168145..168447,168533..168680,170080..170953,171037..171174,172340..173099,174843..175045,176259..176407,184101..184171,184800..185030,185319..185396,187485..187580,188927..189076,189154..189432,191815..191917,192046..192278,192966..193246,193780..194121,194465..194618,195887..196063,196111..196152,197257..197648,197752..197824,198324..198353,198698..198813,200223..200323,200406..200442,201321..201363,201941..202015,202098..203225)
location: region:157030-203225:1
so has part: feature:157030-157263:1:exon
so has part: feature:159141-159314:1:exon
so has part: feature:159510-159601:1:exon
so has part: feature:160687-160767:1:exon
so has part: feature:160866-160981:1:exon
so has part: feature:162105-162217:1:exon
so has part: feature:162943-163108:1:exon
so has part: feature:165678-165817:1:exon
so has part: feature:166530-166688:1:exon
so has part: feature:168145-168447:1:exon
so has part: feature:168533-168680:1:exon
so has part: feature:170080-170953:1:exon
so has part: feature:171037-171174:1:exon
so has part: feature:172340-173099:1:exon
so has part: feature:174843-175045:1:exon
so has part: feature:176259-176407:1:exon
so has part: feature:184101-184171:1:exon
so has part: feature:184800-185030:1:exon
so has part: feature:185319-185396:1:exon
so has part: feature:187485-187580:1:exon
so has part: feature:188927-189076:1:exon
so has part: feature:189154-189432:1:exon
so has part: feature:191815-191917:1:exon
so has part: feature:192046-192278:1:exon
so has part: feature:192966-193246:1:exon
so has part: feature:193780-194121:1:exon
so has part: feature:194465-194618:1:exon
so has part: feature:195887-196063:1:exon
so has part: feature:196111-196152:1:exon
so has part: feature:197257-197648:1:exon
so has part: feature:197752-197824:1:exon
so has part: feature:198324-198353:1:exon
so has part: feature:198698-198813:1:exon
so has part: feature:200223-200323:1:exon
so has part: feature:200406-200442:1:exon
so has part: feature:201321-201363:1:exon
so has part: feature:201941-202015:1:exon
so has part: feature:202098-203225:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:157030-157263:1:exon

position:157263:1
position: 157263
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:159141-159314:1:exon

position:159141:1
position: 159141
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:159314:1
position: 159314
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:159510-159601:1:exon

position:159510:1
position: 159510
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:159601:1
position: 159601
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:160687-160767:1:exon

position:160687:1
position: 160687
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:160767:1
position: 160767
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:160866-160981:1:exon

position:160866:1
position: 160866
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:160981:1
position: 160981
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:162105-162217:1:exon

position:162105:1
position: 162105
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:162217:1
position: 162217
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:162943-163108:1:exon

position:162943:1
position: 162943
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:163108:1
position: 163108
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:165678-165817:1:exon

position:165678:1
position: 165678
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:165817:1
position: 165817
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:166530-166688:1:exon

position:166530:1
position: 166530
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:166688:1
position: 166688
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:168145-168447:1:exon

position:168145:1
position: 168145
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:168447:1
position: 168447
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:168533-168680:1:exon

position:168533:1
position: 168533
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:168680:1
position: 168680
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:170080-170953:1:exon

position:170080:1
position: 170080
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:170953:1
position: 170953
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:171037-171174:1:exon

position:171037:1
position: 171037
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:171174:1
position: 171174
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:172340-173099:1:exon

position:172340:1
position: 172340
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:173099:1
position: 173099
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:174843-175045:1:exon

position:174843:1
position: 174843
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:175045:1
position: 175045
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:176259-176407:1:exon

position:176259:1
position: 176259
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:176407:1
position: 176407
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:184101-184171:1:exon

position:184101:1
position: 184101
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:184171:1
position: 184171
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:184800-185030:1:exon

position:184800:1
position: 184800
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:185030:1
position: 185030
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:185319-185396:1:exon

position:185319:1
position: 185319
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:185396:1
position: 185396
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:187485-187580:1:exon

position:187485:1
position: 187485
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:187580:1
position: 187580
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:188927-189076:1:exon

position:188927:1
position: 188927
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:189076:1
position: 189076
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 22
SIO_000628: feature:189154-189432:1:exon

position:189154:1
position: 189154
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:189432:1
position: 189432
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 23
SIO_000628: feature:191815-191917:1:exon

position:191815:1
position: 191815
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:191917:1
position: 191917
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 24
SIO_000628: feature:192046-192278:1:exon

position:192046:1
position: 192046
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:192278:1
position: 192278
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 25
SIO_000628: feature:192966-193246:1:exon

position:192966:1
position: 192966
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:193246:1
position: 193246
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 26
SIO_000628: feature:193780-194121:1:exon

position:193780:1
position: 193780
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:194121:1
position: 194121
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 27
SIO_000628: feature:194465-194618:1:exon

position:194465:1
position: 194465
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:194618:1
position: 194618
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 28
SIO_000628: feature:195887-196063:1:exon

position:195887:1
position: 195887
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:196063:1
position: 196063
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 29
SIO_000628: feature:196111-196152:1:exon

position:196111:1
position: 196111
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:196152:1
position: 196152
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 30
SIO_000628: feature:197257-197648:1:exon

position:197257:1
position: 197257
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:197648:1
position: 197648
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 31
SIO_000628: feature:197752-197824:1:exon

position:197752:1
position: 197752
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:197824:1
position: 197824
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 32
SIO_000628: feature:198324-198353:1:exon

position:198324:1
position: 198324
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:198353:1
position: 198353
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 33
SIO_000628: feature:198698-198813:1:exon

position:198698:1
position: 198698
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:198813:1
position: 198813
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 34
SIO_000628: feature:200223-200323:1:exon

position:200223:1
position: 200223
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:200323:1
position: 200323
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 35
SIO_000628: feature:200406-200442:1:exon

position:200406:1
position: 200406
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:200442:1
position: 200442
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 36
SIO_000628: feature:201321-201363:1:exon

position:201321:1
position: 201321
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:201363:1
position: 201363
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 37
SIO_000628: feature:201941-202015:1:exon

position:201941:1
position: 201941
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:202015:1
position: 202015
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 38
SIO_000628: feature:202098-203225:1:exon

position:202098:1
position: 202098
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

SPTBN4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59894
gene: SPTBN4
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: spectrin beta chain, non-erythrocytic 4
translation: VVLGSQDGFGVVLGCFWAGFGVTSLSPDERDAVQKKTFTKWVNAHLARAACRVGDLYSDLRDGFVLTRLLEVLSGETLPRPTRGRMRIHSLENVDKALQFLKEQRVHLENVGSHDIVDGNHRLTLGLIWTIILRFQIQVIKIKTEDNRETRSAKDALLLWCQMKTAGYPEVNIQNFTTSWRDGLAFNALIHRHRPDLIDFHKLTKSNATYNLQQAFNTAEQHLGLSKLLDPEDVNMEDPDEKSIITYVVSFYHYFSKMKALAVEGKRIGKVLDQVMEIAAITARYEALAAELLAWIQHTIAIIANQKFANSLSGVQQQLQAFTAFCRLPTGARFQEKGNLEVLLFTIQSKLRATNRKLYVPSEGKSISDINKAWSCLEKAEHEREVALRNELIRQEKLELLAQRFDHKAVMRETWLNENQRLVSQDNFGYDLPAVEAAMKKHEAIEADISSYQERIQVVVELALEVESEGYYDTRRIGAQKDNILRQWALLTELVRARRARLEQNLALQKIFQEMVYMIDWMEEMQVLLVSKDLGKHLLEVEDLLQKHGLLEADIAAQTERVQALNAAALKFSELAGYQPCDPQIICNRVNHVQTCLEELEELAAKRRKELEDSRQLWTFFQEMEEAEAWIREKEKILAAKSCGRDLSSVVTLTNKHKTMLGELGNRRALLHQTMKKGEKILAKKSFGSVGIQEKMREVCLRWKKLEEVTGLHQQRLEDAMNFFQFSAETDDLVAWLQDMYRIVSSDDFGHDDYSSQALLRKHRAVVDEVEKHRGAVMSLRKQLALLAPDHRQGVDVQIRVVEVEQLYGEVAEVAVLRTQWLQDALAVYRMFSEVHACEVWVDEKEQWLEKMEVPEELDEVEVVQHRFESLDQEMNSVMGRILDVNQVVQQLVEGGHPSSDEVRSCQDHLNSRWNRVVELVETKKRRLSSVLKIQNFLLECGEMKAQVREKRKAVEATRSGGGGDLGGVLALQRRLSTVEAALAVLEPRLVELQQEGEALAAAHPERALEILLPFEEIGEEWDDLKRALQGCEDTLTVAGRLQQFIQDLDNFLGWLVKTQAAVGSEEVPESLEEAERLLNVHVALKEEINGYEEDYAKIQAASELLALEEMDVPYLSLQQWLQKLEAGWGKLLQSWEMRREVLVQSHIFQLFLRDVRQCQNSLCNQESILVHAELPDSVEGVTKALKEHQDFTTTLELSLQKVQQVLQAGESLRRQQNLHGERVAEAVAGLRDRSQRNQQLAQERARRLRDQLELQRFLQESREVRPQIGWDPKNQLGHPKKWGVPPWPQTPPDEFWSPNLPPKLLLGPTFYFKPLILNFGVPLCPQTACDKFRGPPFTPKLQEGEELVQAKPELSGAVRRQLEELRRCWQELESTSQARSRRLRLEEQLETVGSGADLRSVSRQLKRLQTMESQVEEWYKEVGELQAQAAALPAQAAGRDAKWGWDGRGHSHDAELHPHPQMWVQDRLPLAMLKDHGTNLQTVQQFIKKNQNLRREIQVHRPRVDEVLERAAAVATIKSPEAEGVRCLLERLGTMWAELQEQTERRQQTLDATYQLEQYYFDVAEVESWLGEQELLLMNEEKGKDEQSTLQLLKKHLLTEQTIENYEETIAQLSRQCRRLTAAVSLPSEQVSRRQSQVDRLYVSLKDLVEERKVKLEQQYWLYQLNREVDELEHWIAEKEVVAGSPELGQDFEHVTLLQEKFLEFASETGSVGQERIAAVNQMVDELIDYGHTDAATIAEWKDGVNEAWADLLELMETRAQMLAASHELHKFFNDCKEVLGQIEEKRQRLPPPPPPPPPTSAGALQRALGAFEHDVEVLVTQVRQLQEGAAQLRTLYAGDNAEAIAGREQEVLRAWKELLAACEECRLHVASVADKIRFVGTVRDLLAWMDGVLHQMGAGEKPRDVSSVELLMNDHQSLKTEMEARAKNVATCLELGKTLILSKSPAADEVPGRGAALAVPAVREVHQFAQEAVVADAWLTAQEPLLKSQELGSSVDEV…
SIO_010081: SPTBN4
subclass of: SO_0000673
so part of: SPTBN4
location: join(<157030..157263,159141..159314,159510..159601,160687..160767,160866..160981,162105..162217,162943..163108,165678..165817,166530..166688,168145..168447,168533..168680,170080..170953,171037..171174,172340..173099,174843..175045,176259..176407,184101..184171,184800..185030,185319..185396,187485..187580,188927..189076,189154..189432,191815..191917,192046..192278,192966..193246,193780..194121,194465..194618,195887..196063,196111..196152,197257..197648,197752..197824,198324..198353,198698..198813,200223..200323,200406..200442,201321..201363,201941..202015,202098..202169)
location: region:157030-202169:1
so has part: feature:157030-157263:1:exon
so has part: feature:159141-159314:1:exon
so has part: feature:159510-159601:1:exon
so has part: feature:160687-160767:1:exon
so has part: feature:160866-160981:1:exon
so has part: feature:162105-162217:1:exon
so has part: feature:162943-163108:1:exon
so has part: feature:165678-165817:1:exon
so has part: feature:166530-166688:1:exon
so has part: feature:168145-168447:1:exon
so has part: feature:168533-168680:1:exon
so has part: feature:170080-170953:1:exon
so has part: feature:171037-171174:1:exon
so has part: feature:172340-173099:1:exon
so has part: feature:174843-175045:1:exon
so has part: feature:176259-176407:1:exon
so has part: feature:184101-184171:1:exon
so has part: feature:184800-185030:1:exon
so has part: feature:185319-185396:1:exon
so has part: feature:187485-187580:1:exon
so has part: feature:188927-189076:1:exon
so has part: feature:189154-189432:1:exon
so has part: feature:191815-191917:1:exon
so has part: feature:192046-192278:1:exon
so has part: feature:192966-193246:1:exon
so has part: feature:193780-194121:1:exon
so has part: feature:194465-194618:1:exon
so has part: feature:195887-196063:1:exon
so has part: feature:196111-196152:1:exon
so has part: feature:197257-197648:1:exon
so has part: feature:197752-197824:1:exon
so has part: feature:198324-198353:1:exon
so has part: feature:198698-198813:1:exon
so has part: feature:200223-200323:1:exon
so has part: feature:200406-200442:1:exon
so has part: feature:201321-201363:1:exon
so has part: feature:201941-202015:1:exon
so has part: feature:202098-202169:1:exon

XP_016160407.1
type: Protein
SIO_000068: ncbiprotein

position:202169:1
position: 202169
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:157030-157263:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:159141-159314:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:159510-159601:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:160687-160767:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:160866-160981:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:162105-162217:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:162943-163108:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:165678-165817:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:166530-166688:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:168145-168447:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:168533-168680:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:170080-170953:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:171037-171174:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:172340-173099:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:174843-175045:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:176259-176407:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:184101-184171:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:184800-185030:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:185319-185396:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:187485-187580:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:188927-189076:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:189154-189432:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:191815-191917:1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:192046-192278:1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:192966-193246:1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:193780-194121:1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:194465-194618:1:exon

urn:…
SIO_000300: 28
SIO_000628: feature:195887-196063:1:exon

urn:…
SIO_000300: 29
SIO_000628: feature:196111-196152:1:exon

urn:…
SIO_000300: 30
SIO_000628: feature:197257-197648:1:exon

urn:…
SIO_000300: 31
SIO_000628: feature:197752-197824:1:exon

urn:…
SIO_000300: 32
SIO_000628: feature:198324-198353:1:exon

urn:…
SIO_000300: 33
SIO_000628: feature:198698-198813:1:exon

urn:…
SIO_000300: 34
SIO_000628: feature:200223-200323:1:exon

urn:…
SIO_000300: 35
SIO_000628: feature:200406-200442:1:exon

urn:…
SIO_000300: 36
SIO_000628: feature:201321-201363:1:exon

urn:…
SIO_000300: 37
SIO_000628: feature:201941-202015:1:exon

urn:…
SIO_000300: 38
SIO_000628: feature:202098-202169:1:exon

LOC107604315
type: Gene
subclass of: SO_0000704
RO_0002162: 59894
gene: LOC107604315
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 205046..226961
location: region:205046-226961:1
so has part: feature:205046-226961:1:exon
subclass of: SO_0000010

107604315
type: Gene
SIO_000068: ncbigene

position:205046:1
position: 205046
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:226961:1
position: 226961
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:205046-226961:1:exon

LOC107604315
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59894
gene: LOC107604315
product: zinc finger protein 239-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins, and 75% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_016304922.1
SIO_010081: LOC107604315
subclass of: SO_0000673
so part of: LOC107604315
location: join(205046..205054,213135..213434,223152..223528,226826..226961)
location: region:205046-226961:1
so has part: feature:205046-205054:1:exon
so has part: feature:213135-213434:1:exon
so has part: feature:223152-223528:1:exon
so has part: feature:226826-226961:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:205046-205054:1:exon

position:205054:1
position: 205054
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:213135-213434:1:exon

position:213135:1
position: 213135
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:213434:1
position: 213434
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:223152-223528:1:exon

position:223152:1
position: 223152
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:223528:1
position: 223528
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:226826-226961:1:exon

position:226826:1
position: 226826
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC107604315
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59894
gene: LOC107604315
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: zinc finger protein 239-like
translation: MSPGFRENSTLTCHQRIHTGEKPHECEKCGKRFSHISSLISHQRIHTGDRPFECEECGKSFSQSCNLIRHQRIHTGKRPHKCSKCGKRFSTSSDLVKHYQTIGGQRIHTGERPYECGECGKRFHIRGNLLRHQRTHTDKKPFRCPDCGKGFRENSDLITHHRIHTGEKPHKCEECGMSFSQSFSLIRHQRIHTGERPCECSKCGKRFSTSSDLVKHYQTHTQERPYECPAGLSLGPTAVPVSVLVLILFSVLDSVSVLVLVIERSQFQCWYWC
SIO_010081: LOC107604315
subclass of: SO_0000673
so part of: LOC107604315
location: join(205046..205054,213135..213434,223152..223528,226826..226961)
location: region:205046-226961:1
so has part: feature:205046-205054:1:exon
so has part: feature:213135-213434:1:exon
so has part: feature:223152-223528:1:exon
so has part: feature:226826-226961:1:exon

XP_016160408.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:205046-205054:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:213135-213434:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:223152-223528:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:226826-226961:1:exon