Ficedula albicollis isolate OC2 linkage group LG34, FicAlb1.5, whole genome shotgun sequence.
type: Entry
definition: Ficedula albicollis isolate OC2 linkage group LG34, FicAlb1.5, whole genome shotgun sequence.
sequence version: NC_021701.1
sequence date: 2016-04-20
sequence: sequence
division: CON
label: NC_021701.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA208061
dblink: SAMN02981387
keyword: WGS
keyword: RefSeq
source: Ficedula albicollis (collared flycatcher)
organism: Ficedula albicollis
taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Muscicapidae; Ficedula.
reference: 1
references: 23103876
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCM002018.1.\nAssembly name: FicAlb1.5\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by Uppsala University on 2013/06/24.\nThe original whole-genome shotgun project has the accession\nAGTO00000000.2.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Uppsala University\nAssembly Method :: SOAPdenovo v. 1.05\nAssembly Name :: FicAlb1.5\nGenome Coverage :: 60.0x\nSequencing Technology :: Illumina GAII; Illumina HiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Status :: Full annotation\nAnnotation Version :: Ficedula albicollis Annotation\n Release 101\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 7.0\nAnnotation Method :: Best-placed RefSeq; Gnomon\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\n##Genome-Annotation-Data-END##

sequence
subclass of: SO_0000018
sequence length: 476164
topology: linear
so has quality: SO_0000987
location: 1..476164
location: region:1-476164:1
RO_0002162: 59894

NC_021701
type: RefSeq
SIO_000068: refseq

PRJNA208061
type: BioProject
SIO_000068: bioproject

SAMN02981387
type: BioSample
SIO_000068: biosample

1
title: The genomic landscape of species divergence in Ficedula flycatchers
author: Ellegren, H.
author: Smeds, L.
author: Burri, R.
author: Olason, P.I.
author: Backstrom, N.
author: Kawakami, T.
author: Kunstner, A.
author: Makinen, H.
author: Nadachowska-Brzyska, K.
author: Qvarnstrom, A.
author: Uebbing, S.
author: Wolf, J.B.
journal: Nature
volume: 491
issue: 7426
pages: 756-760
year: 2012
pubmed: 23103876

23103876
type: PubMed
SIO_000068: pubmed

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:476164:1
position: 476164
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-476164:1:source
so part of: sequence
organism: Ficedula albicollis
mol type: genomic DNA
isolate: OC2
sex: male
country: Sweden: Oland
collection date: 2009
linkage group: LG34

59894
type: Taxonomy
SIO_000068: taxonomy

LOC101817630
type: Gene
subclass of: SO_0000704
RO_0002162: 59894
gene: LOC101817630
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: <4824..13050
location: region:4824-13050:1
so has part: feature:4824-13050:1:exon
subclass of: SO_0000010

101817630
type: Gene
SIO_000068: ncbigene

position:4824:1
position: 4824
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:13050:1
position: 13050
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4824-13050:1:exon

LOC101817630
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59894
gene: LOC101817630
product: transcription factor p65-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 94% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_016304908.1
SIO_010081: LOC101817630
subclass of: SO_0000673
so part of: LOC101817630
location: join(<4824..5252,10512..10617,12388..13050)
location: region:4824-13050:1
so has part: feature:4824-5252:1:exon
so has part: feature:10512-10617:1:exon
so has part: feature:12388-13050:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4824-5252:1:exon

position:5252:1
position: 5252
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:10512-10617:1:exon

position:10512:1
position: 10512
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10617:1
position: 10617
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:12388-13050:1:exon

position:12388:1
position: 12388
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC101817630
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59894
gene: LOC101817630
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: transcription factor p65-like
translation: GTGSTGSYWEGTGGGPGAAGGVTGAYWAILVCTGQCQSSSAGVGTTWGCHWEGSWGGRWFILVYVGLCRFLWVRTGPYWSILVRAGLSRAVPPEQRGGEYDLAAVRLCFQVWVRGPGGLRPLPPVLSQPIYDNREWGHLGDTWSPGDLQCIEEKRKRTRDTFRSFVQRSPLPGAGGTGAPGPGLGAGPEDSLPSLGELDFSAFLSQFPSS
SIO_010081: LOC101817630
subclass of: SO_0000673
so part of: LOC101817630
location: join(<4824..5252,10512..10617,12388..12485)
location: region:4824-12485:1
so has part: feature:4824-5252:1:exon
so has part: feature:10512-10617:1:exon
so has part: feature:12388-12485:1:exon

XP_016160394.1
type: Protein
SIO_000068: ncbiprotein

position:12485:1
position: 12485
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4824-5252:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:10512-10617:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:12388-12485:1:exon

LOC101817254
type: Gene
subclass of: SO_0000704
RO_0002162: 59894
gene: LOC101817254
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 32624..41745
location: region:32624-41745:1
so has part: feature:32624-41745:1:exon
subclass of: SO_0000010

101817254
type: Gene
SIO_000068: ncbigene

position:32624:1
position: 32624
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:41745:1
position: 41745
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:32624-41745:1:exon

LOC101817254
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59894
gene: LOC101817254
product: solute carrier family 22 member 6-like
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins, and 89% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_016304909.1
SIO_010081: LOC101817254
subclass of: SO_0000673
so part of: LOC101817254
location: join(32624..32643,36151..36991,41036..41307,41505..41546,41627..41745)
location: region:32624-41745:1
so has part: feature:32624-32643:1:exon
so has part: feature:36151-36991:1:exon
so has part: feature:41036-41307:1:exon
so has part: feature:41505-41546:1:exon
so has part: feature:41627-41745:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:32624-32643:1:exon

position:32643:1
position: 32643
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:36151-36991:1:exon

position:36151:1
position: 36151
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:36991:1
position: 36991
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:41036-41307:1:exon

position:41036:1
position: 41036
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:41307:1
position: 41307
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:41505-41546:1:exon

position:41505:1
position: 41505
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:41546:1
position: 41546
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:41627-41745:1:exon

position:41627:1
position: 41627
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC101817254
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59894
gene: LOC101817254
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: solute carrier family 22 member 6-like
translation: MPRSHLRVTWRPSLRCHLSIGHSPTSPATTGVLGLGRGPGPQSHAAPCPWQWDLVCSSRGLKQLAQSLYMAGVLAGGVFGGLSPRFGRRSVLTWCYLQMAAMGTCSSFAPTFTVYCLFRFLTGMAFSGIVLNSVSLCTSARGRDPPGACRGGLCPPPWVHVTPKPTLGTCLGGLCVPPWVHVTPKPPWAPAWVGSVPPHGSMSPQNPPWAPAWVGSVSSLWVRDPPEPSHVPRGDTCGHHPGGLPVPWAPPRWAPRPLAPVGPGPARTCPGLRVPLGTTPVVSHPPGYHPSTGDIFTPCPPSSWPRFSTSFAYYGLAMDLQNFEFDIYVIQLIFGAVDIPAKLVSVLTITYVGRRFTQALALVLAGLAILANTLVPRDLRTLRTALAVFGKGCLAASFNCVFLYTGELYPTVIR
SIO_010081: LOC101817254
subclass of: SO_0000673
so part of: LOC101817254
location: join(32624..32643,36151..36991,41036..41307,41505..41546,41627..41697)
location: region:32624-41697:1
so has part: feature:32624-32643:1:exon
so has part: feature:36151-36991:1:exon
so has part: feature:41036-41307:1:exon
so has part: feature:41505-41546:1:exon
so has part: feature:41627-41697:1:exon

XP_016160395.1
type: Protein
SIO_000068: ncbiprotein

position:41697:1
position: 41697
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:32624-32643:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:36151-36991:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:41036-41307:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:41505-41546:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:41627-41697:1:exon

DPF2
type: Gene
subclass of: SO_0000704
RO_0002162: 59894
gene: DPF2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(65606..88273)
location: region:65606-88273:-1
so has part: feature:65606-88273:-1:exon
subclass of: SO_0000010

101817051
type: Gene
SIO_000068: ncbigene

position:65606:-1
position: 65606
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:88273:-1
position: 88273
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:65606-88273:-1:exon

DPF2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59894
gene: DPF2
product: double PHD fingers 2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 15 Proteins, and 82% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_005061307.1
SIO_010081: DPF2
subclass of: SO_0000673
so part of: DPF2
location: complement(join(65606..65729,71107..71235,71344..71481,76353..76491,81560..81652,85583..85642,86725..86912,87538..87698,88218..88273))
location: region:65606-88273:-1
so has part: feature:88218-88273:-1:exon
so has part: feature:87538-87698:-1:exon
so has part: feature:86725-86912:-1:exon
so has part: feature:85583-85642:-1:exon
so has part: feature:81560-81652:-1:exon
so has part: feature:76353-76491:-1:exon
so has part: feature:71344-71481:-1:exon
so has part: feature:71107-71235:-1:exon
so has part: feature:65606-65729:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:88218-88273:-1:exon

position:88218:-1
position: 88218
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:87538-87698:-1:exon

position:87538:-1
position: 87538
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:87698:-1
position: 87698
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:86725-86912:-1:exon

position:86725:-1
position: 86725
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:86912:-1
position: 86912
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:85583-85642:-1:exon

position:85583:-1
position: 85583
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:85642:-1
position: 85642
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:81560-81652:-1:exon

position:81560:-1
position: 81560
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:81652:-1
position: 81652
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:76353-76491:-1:exon

position:76353:-1
position: 76353
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:76491:-1
position: 76491
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:71344-71481:-1:exon

position:71344:-1
position: 71344
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:71481:-1
position: 71481
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:71107-71235:-1:exon

position:71107:-1
position: 71107
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:71235:-1
position: 71235
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:65606-65729:-1:exon

position:65729:-1
position: 65729
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

DPF2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59894
gene: DPF2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: zinc finger protein ubi-d4
translation: MPFPLPIPTLTSAAPGTDRLGEQYYRDAMEQCHSYNARLCAERSVRLPFLDSQTGVAQSNCYIWMEKRHRGPGLAAGQLYSYPARRWRKKRRAHPPEDPRLSFPSIKPGNSSPSCCFPGNSTLDPPASRTLPPFFERGYRDSLGEFPVSNSRARKRILEPDDFLDDLDDEDYEEDTPKRRGKGKAKGSLRSCFSCPFFSPVFRVCVSVSSHDFSFCVSDSYKQKHSLKPPDRVCGKRYKNRPGLSYHYAHSHLAEEEGDDKDDSQPPTPVSQRSEEQKSKKGPDGLALPNNYCDFCLGDSKINKKTGQPEELVSCSDCGRSGRRFPAGSWSCHLCLDLLKEKASIYQNQNSS
SIO_010081: DPF2
subclass of: SO_0000673
so part of: DPF2
location: complement(join(65635..65729,71107..71235,71344..71481,76353..76491,81560..81652,85583..85642,86725..86912,87538..87698,88218..88273))
location: region:65635-88273:-1
so has part: feature:88218-88273:-1:exon
so has part: feature:87538-87698:-1:exon
so has part: feature:86725-86912:-1:exon
so has part: feature:85583-85642:-1:exon
so has part: feature:81560-81652:-1:exon
so has part: feature:76353-76491:-1:exon
so has part: feature:71344-71481:-1:exon
so has part: feature:71107-71235:-1:exon
so has part: feature:65635-65729:-1:exon

XP_005061364.1
type: Protein
SIO_000068: ncbiprotein

position:65635:-1
position: 65635
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:88218-88273:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:87538-87698:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:86725-86912:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:85583-85642:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:81560-81652:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:76353-76491:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:71344-71481:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:71107-71235:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:65635-65729:-1:exon

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 59894
estimated length: 5000
gap type: between scaffolds
so part of: sequence
location: 95161..100160
location: region:95161-100160:1
so has part: feature:95161-100160:1:region

position:95161:1
position: 95161
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:100160:1
position: 100160
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:95161-100160:1:region

LOC107604313
type: Gene
subclass of: SO_0000704
RO_0002162: 59894
gene: LOC107604313
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(134239..134680)
location: region:134239-134680:-1
so has part: feature:134239-134680:-1:exon
subclass of: SO_0000011

107604313
type: Gene
SIO_000068: ncbigene

position:134239:-1
position: 134239
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:134680:-1
position: 134680
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:134239-134680:-1:exon

LOC107604313
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 59894
nc RNA class: lncRNA
gene: LOC107604313
product: uncharacterized LOC107604313
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 14 samples with support for all annotated introns
transcript id: XR_001612102.1
SIO_010081: LOC107604313
subclass of: SO_0000673
so part of: LOC107604313
location: complement(join(134239..134304,134447..134520,134631..134680))
location: region:134239-134680:-1
so has part: feature:134631-134680:-1:exon
so has part: feature:134447-134520:-1:exon
so has part: feature:134239-134304:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:134631-134680:-1:exon

position:134631:-1
position: 134631
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:134447-134520:-1:exon

position:134447:-1
position: 134447
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:134520:-1
position: 134520
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:134239-134304:-1:exon

position:134304:-1
position: 134304
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC101818353
type: Gene
subclass of: SO_0000704
RO_0002162: 59894
gene: LOC101818353
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(143231..155502)
location: region:143231-155502:-1
so has part: feature:143231-155502:-1:exon
subclass of: SO_0000010

101818353
type: Gene
SIO_000068: ncbigene

position:143231:-1
position: 143231
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:155502:-1
position: 155502
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:143231-155502:-1:exon

LOC101818353
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59894
gene: LOC101818353
product: calpain-1 catalytic subunit-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 17 Proteins, and 92% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_016304910.1
SIO_010081: LOC101818353
subclass of: SO_0000673
so part of: LOC101818353
location: complement(join(143231..143297,145544..145757,145812..145816,145906..146049,147893..147964,148107..148164,148525..148590,148672..148711,149665..149876,149965..149976,150820..150998,151069..151094,151283..151324,151399..151473,151539..151624,151695..151793,155015..155133,155219..155502))
location: region:143231-155502:-1
so has part: feature:155219-155502:-1:exon
so has part: feature:155015-155133:-1:exon
so has part: feature:151695-151793:-1:exon
so has part: feature:151539-151624:-1:exon
so has part: feature:151399-151473:-1:exon
so has part: feature:151283-151324:-1:exon
so has part: feature:151069-151094:-1:exon
so has part: feature:150820-150998:-1:exon
so has part: feature:149965-149976:-1:exon
so has part: feature:149665-149876:-1:exon
so has part: feature:148672-148711:-1:exon
so has part: feature:148525-148590:-1:exon
so has part: feature:148107-148164:-1:exon
so has part: feature:147893-147964:-1:exon
so has part: feature:145906-146049:-1:exon
so has part: feature:145812-145816:-1:exon
so has part: feature:145544-145757:-1:exon
so has part: feature:143231-143297:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:155219-155502:-1:exon

position:155219:-1
position: 155219
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:155015-155133:-1:exon

position:155015:-1
position: 155015
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:155133:-1
position: 155133
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:151695-151793:-1:exon

position:151695:-1
position: 151695
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:151793:-1
position: 151793
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:151539-151624:-1:exon

position:151539:-1
position: 151539
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:151624:-1
position: 151624
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:151399-151473:-1:exon

position:151399:-1
position: 151399
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:151473:-1
position: 151473
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:151283-151324:-1:exon

position:151283:-1
position: 151283
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:151324:-1
position: 151324
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:151069-151094:-1:exon

position:151069:-1
position: 151069
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:151094:-1
position: 151094
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:150820-150998:-1:exon

position:150820:-1
position: 150820
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:150998:-1
position: 150998
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:149965-149976:-1:exon

position:149965:-1
position: 149965
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:149976:-1
position: 149976
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:149665-149876:-1:exon

position:149665:-1
position: 149665
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:149876:-1
position: 149876
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:148672-148711:-1:exon

position:148672:-1
position: 148672
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:148711:-1
position: 148711
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:148525-148590:-1:exon

position:148525:-1
position: 148525
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:148590:-1
position: 148590
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:148107-148164:-1:exon

position:148107:-1
position: 148107
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:148164:-1
position: 148164
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:147893-147964:-1:exon

position:147893:-1
position: 147893
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:147964:-1
position: 147964
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:145906-146049:-1:exon

position:145906:-1
position: 145906
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:146049:-1
position: 146049
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:145812-145816:-1:exon

position:145812:-1
position: 145812
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:145816:-1
position: 145816
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:145544-145757:-1:exon

position:145544:-1
position: 145544
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:145757:-1
position: 145757
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:143231-143297:-1:exon

position:143297:-1
position: 143297
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC101818353
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59894
gene: LOC101818353
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: calpain-1 catalytic subunit-like
translation: MAAPGTGTDSPGPASTWARPELRSRAVVGSRVPVSDDGREADRRNFGPPLAVWKVPECGAVPDFGFPQELCPRPQFIVDGATRTDICQGALGDCWLLAAIASLTLNEALLHRVVPHGQSFQQGYAGIFHFQGGSVQITSAFDMEAVTFKKLVKGHAYSVTGAKQIPYRGQALELIRMRNPWGEVEWTGAWSDGSAEWHAVEPALRQQLMVKMEDGEFWMSFRDFLREFTRDRPPPPRNYPATFWINPQFKIQLEEVDDERDEDGGREPGCSFLLALMQKHRRRERRYGKDMETIGFAVYEVPPEYVGRSGVHLKREFFLANASRARSEQFINLREVSTRFRLPPGEYIVVPSTFEPNKEGDFVLRVFSEKRAGTEEMDDKVQATLPDEKVLSEGEIDENFKQLFKQLAGPDLEISVTELQTILNRIIAKHKDLRTKGFSIESCRSMVNLMDVSLTPVLLGVISPHPRSLGLCSCQSIFRKFDLDKSGSISAYELRLALEAAGYPKRLHELLITRYAEPDLALDFDSFVCCLVRLETMFREQPLPRPPEGPRPRQTRPKTLPR
SIO_010081: LOC101818353
subclass of: SO_0000673
so part of: LOC101818353
location: complement(join(145578..145757,145812..145816,145906..146049,147893..147964,148107..148164,148525..148590,148672..148711,149665..149876,149965..149976,150820..150998,151069..151094,151283..151324,151399..151473,151539..151624,151695..151793,155015..155133,155219..155492))
location: region:145578-155492:-1
so has part: feature:155219-155492:-1:exon
so has part: feature:155015-155133:-1:exon
so has part: feature:151695-151793:-1:exon
so has part: feature:151539-151624:-1:exon
so has part: feature:151399-151473:-1:exon
so has part: feature:151283-151324:-1:exon
so has part: feature:151069-151094:-1:exon
so has part: feature:150820-150998:-1:exon
so has part: feature:149965-149976:-1:exon
so has part: feature:149665-149876:-1:exon
so has part: feature:148672-148711:-1:exon
so has part: feature:148525-148590:-1:exon
so has part: feature:148107-148164:-1:exon
so has part: feature:147893-147964:-1:exon
so has part: feature:145906-146049:-1:exon
so has part: feature:145812-145816:-1:exon
so has part: feature:145578-145757:-1:exon

XP_016160396.1
type: Protein
SIO_000068: ncbiprotein

position:145578:-1
position: 145578
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:155492:-1
position: 155492
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:155219-155492:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:155015-155133:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:151695-151793:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:151539-151624:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:151399-151473:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:151283-151324:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:151069-151094:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:150820-150998:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:149965-149976:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:149665-149876:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:148672-148711:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:148525-148590:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:148107-148164:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:147893-147964:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:145906-146049:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:145812-145816:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:145578-145757:-1:exon

LOC101817835
type: Gene
subclass of: SO_0000704
RO_0002162: 59894
gene: LOC101817835
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 168853..173100
location: region:168853-173100:1
so has part: feature:168853-173100:1:exon
subclass of: SO_0000010

101817835
type: Gene
SIO_000068: ncbigene

position:168853:1
position: 168853
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:173100:1
position: 173100
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:168853-173100:1:exon

LOC101817835
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59894
gene: LOC101817835
product: E3 ubiquitin-protein ligase synoviolin
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 15 samples with support for all annotated introns
transcript id: XM_005061310.2
SIO_010081: LOC101817835
subclass of: SO_0000673
so part of: LOC101817835
location: join(168853..169014,169252..169344,172032..172184,172997..173100)
location: region:168853-173100:1
so has part: feature:168853-169014:1:exon
so has part: feature:169252-169344:1:exon
so has part: feature:172032-172184:1:exon
so has part: feature:172997-173100:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:168853-169014:1:exon

position:169014:1
position: 169014
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:169252-169344:1:exon

position:169252:1
position: 169252
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:169344:1
position: 169344
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:172032-172184:1:exon

position:172032:1
position: 172032
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:172184:1
position: 172184
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:172997-173100:1:exon

position:172997:1
position: 172997
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC101817835
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59894
gene: LOC101817835
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: E3 ubiquitin-protein ligase synoviolin
translation: MLCTALVMAGSLALTTAVVAHAYYLKHQFYPTVVYLTKSSPSMAVLYIQAFVLVFLLGKFMGKVFFGQLRAAEMEHLLERSWYAVTETCLAFTVFRDDFSPRFVALFTLLLFLKCFHWLAEDRVDFMERSPNISWLFHFRIVCECPSFVCSSFA
SIO_010081: LOC101817835
subclass of: SO_0000673
so part of: LOC101817835
location: join(168883..169014,169252..169344,172032..172184,172997..173083)
location: region:168883-173083:1
so has part: feature:168883-169014:1:exon
so has part: feature:169252-169344:1:exon
so has part: feature:172032-172184:1:exon
so has part: feature:172997-173083:1:exon

XP_005061367.1
type: Protein
SIO_000068: ncbiprotein

position:168883:1
position: 168883
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:173083:1
position: 173083
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:168883-169014:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:169252-169344:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:172032-172184:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:172997-173083:1:exon

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 59894
estimated length: 5000
gap type: between scaffolds
so part of: sequence
location: 194446..199445
location: region:194446-199445:1
so has part: feature:194446-199445:1:region

position:194446:1
position: 194446
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:199445:1
position: 199445
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:194446-199445:1:region

LOC101818557
type: Gene
subclass of: SO_0000704
RO_0002162: 59894
gene: LOC101818557
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 205087..231003
location: region:205087-231003:1
so has part: feature:205087-231003:1:exon
subclass of: SO_0000010

101818557
type: Gene
SIO_000068: ncbigene

position:205087:1
position: 205087
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:231003:1
position: 231003
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:205087-231003:1:exon

LOC101818557
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59894
gene: LOC101818557
product: plasma membrane calcium-transporting ATPase 3-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 40% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_016304912.1
SIO_010081: LOC101818557
subclass of: SO_0000673
so part of: LOC101818557
location: join(205087..205144,207937..208134,209913..210037,210210..210258,212255..212380,216588..216779,216827..216989,217053..217168,217269..217962,218034..218400,221880..222141,225100..225211,225395..225518,225936..225971,226279..226377,228503..228790,230748..231003)
location: region:205087-231003:1
so has part: feature:205087-205144:1:exon
so has part: feature:207937-208134:1:exon
so has part: feature:209913-210037:1:exon
so has part: feature:210210-210258:1:exon
so has part: feature:212255-212380:1:exon
so has part: feature:216588-216779:1:exon
so has part: feature:216827-216989:1:exon
so has part: feature:217053-217168:1:exon
so has part: feature:217269-217962:1:exon
so has part: feature:218034-218400:1:exon
so has part: feature:221880-222141:1:exon
so has part: feature:225100-225211:1:exon
so has part: feature:225395-225518:1:exon
so has part: feature:225936-225971:1:exon
so has part: feature:226279-226377:1:exon
so has part: feature:228503-228790:1:exon
so has part: feature:230748-231003:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:205087-205144:1:exon

position:205144:1
position: 205144
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:207937-208134:1:exon

position:207937:1
position: 207937
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:208134:1
position: 208134
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:209913-210037:1:exon

position:209913:1
position: 209913
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:210037:1
position: 210037
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:210210-210258:1:exon

position:210210:1
position: 210210
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:210258:1
position: 210258
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:212255-212380:1:exon

position:212255:1
position: 212255
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:212380:1
position: 212380
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:216588-216779:1:exon

position:216588:1
position: 216588
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:216779:1
position: 216779
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:216827-216989:1:exon

position:216827:1
position: 216827
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:216989:1
position: 216989
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:217053-217168:1:exon

position:217053:1
position: 217053
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:217168:1
position: 217168
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:217269-217962:1:exon

position:217269:1
position: 217269
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:217962:1
position: 217962
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:218034-218400:1:exon

position:218034:1
position: 218034
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:218400:1
position: 218400
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:221880-222141:1:exon

position:221880:1
position: 221880
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:222141:1
position: 222141
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:225100-225211:1:exon

position:225100:1
position: 225100
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:225211:1
position: 225211
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:225395-225518:1:exon

position:225395:1
position: 225395
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:225518:1
position: 225518
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:225936-225971:1:exon

position:225936:1
position: 225936
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:225971:1
position: 225971
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:226279-226377:1:exon

position:226279:1
position: 226279
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:226377:1
position: 226377
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:228503-228790:1:exon

position:228503:1
position: 228503
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:228790:1
position: 228790
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:230748-231003:1:exon

position:230748:1
position: 230748
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC101818557
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59894
gene: LOC101818557
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: substituted 1 base at 1 genomic stop codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
transl except: (pos:222123..222125,aa:OTHER)
product: LOW QUALITY PROTEIN: plasma membrane calcium-transporting ATPase 3-like
translation: MRPEPSITCVPGDTAATPARLPEAPPELERRRRAFGRNWIPPRRPKSFAALVWEALQDVTLVILEVAALVSLGLSFYAPPGAADEACGQASGEAEAGWMEGAAILLSVSPCPHMCHPCPHVCHPYPHVPVAELVVGDIVQVKYGDLLPADGVLIQGNDLRIDESALTGESDHVRKGPDRDPLLLSGGPEKDKSVLQGKVTQVTVRVEGLGVPKRVTGTSGTAVTLRTWGTLRTLVTSVTLGDPGDLEDLVTLVTLMTLGDLGDFIDLGDLIDLSALGDLNDLSDLNDLSALRDLSALNDLSDLGALVDLGGLSALSALSALSDLDDLNDLNDLSALEALSAFTPSVPSMTSVPSVPSMTSVPSVPSMTSVPSVPSMTSVPSVPSMTSVPSVPSMTSVPSVPSMTSVPSVPSMTSVPSVPSMTSVPSVPSMTSVPSVPSMTSVPSVPSMTSVPSVPSMTSVPSVPSMTSVPSVPSMTSVPSVPSMTSVPSVPSMTSVPSVPSMTSVPSVPSMTSVPSVPSMTSVPSVPSMTSVPSVPSMTSVPSVPSMTSVPSVTSMTLVPSVPSMTSVTSVPSIALSDLNALGALIALRAPSRPAVPPGLAMSAITVIILVLYFVIETFVVQGRPWLPQCAPVYVQYWVKFFIIGVTVLVVAVPEGLPLAVTISLAYSVKVRRRGPRRETRPGRRFWEIGTFRCCLPPEAPGALPRHVGNKTECALLGLALALGRDPEAERAQVPEEHLVKVFTFNSERKSMSTVTRRPQGGFRLFCKGASEMVLRRXAHLGTGTGRGHRGTSGTHGDHWGHSGDIGGHSGDMGGQSEDTGCAWQVPEAIRKCQRAGITVRMVTGDNLETARAIAAKCGILPDFNRRIRNDRGEVEQERLDKVWPKLRVLARSSPTDKHGGSSGVAQHRQGRHVGPQRLRQHRGGGGGGGAVLTCPCPQGIAGTDVAKEASDIILTDDNFSSIVKAVMWGRNVYDSIAKFLQFQLTVNVVAVIVAFTGACITQDSPLKAVQMLWVNLIMDTLASLALATEPPTEALLLRRPYGRDHPLLSGTMLRNILGHALYQLLVIFTLLFTGQ
SIO_010081: LOC101818557
subclass of: SO_0000673
so part of: LOC101818557
location: join(205087..205144,207937..208134,209913..210037,210210..210258,212255..212380,216588..216779,216827..216989,217053..217168,217269..217962,218034..218400,221880..222141,225100..225211,225395..225518,225936..225971,226279..226377,228503..228790,230748..230969)
location: region:205087-230969:1
so has part: feature:205087-205144:1:exon
so has part: feature:207937-208134:1:exon
so has part: feature:209913-210037:1:exon
so has part: feature:210210-210258:1:exon
so has part: feature:212255-212380:1:exon
so has part: feature:216588-216779:1:exon
so has part: feature:216827-216989:1:exon
so has part: feature:217053-217168:1:exon
so has part: feature:217269-217962:1:exon
so has part: feature:218034-218400:1:exon
so has part: feature:221880-222141:1:exon
so has part: feature:225100-225211:1:exon
so has part: feature:225395-225518:1:exon
so has part: feature:225936-225971:1:exon
so has part: feature:226279-226377:1:exon
so has part: feature:228503-228790:1:exon
so has part: feature:230748-230969:1:exon

XP_016160398.1
type: Protein
SIO_000068: ncbiprotein

position:230969:1
position: 230969
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:205087-205144:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:207937-208134:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:209913-210037:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:210210-210258:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:212255-212380:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:216588-216779:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:216827-216989:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:217053-217168:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:217269-217962:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:218034-218400:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:221880-222141:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:225100-225211:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:225395-225518:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:225936-225971:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:226279-226377:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:228503-228790:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:230748-230969:1:exon

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 59894
estimated length: 5000
gap type: between scaffolds
so part of: sequence
location: 231862..236861
location: region:231862-236861:1
so has part: feature:231862-236861:1:region

position:231862:1
position: 231862
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:236861:1
position: 236861
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:231862-236861:1:region

LOC101818944
type: Gene
subclass of: SO_0000704
RO_0002162: 59894
gene: LOC101818944
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(237014..251280)
location: region:237014-251280:-1
so has part: feature:237014-251280:-1:exon
subclass of: SO_0000010

101818944
type: Gene
SIO_000068: ncbigene

position:237014:-1
position: 237014
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:251280:-1
position: 251280
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:237014-251280:-1:exon

LOC101818944
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59894
gene: LOC101818944
product: DNA-directed RNA polymerase II subunit RPB1-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 78% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_016304913.1
SIO_010081: LOC101818944
subclass of: SO_0000673
so part of: LOC101818944
location: complement(join(237014..237201,243392..244528,249508..249577,251263..251280))
location: region:237014-251280:-1
so has part: feature:251263-251280:-1:exon
so has part: feature:249508-249577:-1:exon
so has part: feature:243392-244528:-1:exon
so has part: feature:237014-237201:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:251263-251280:-1:exon

position:251263:-1
position: 251263
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:249508-249577:-1:exon

position:249508:-1
position: 249508
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:249577:-1
position: 249577
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:243392-244528:-1:exon

position:243392:-1
position: 243392
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:244528:-1
position: 244528
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:237014-237201:-1:exon

position:237201:-1
position: 237201
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC101818944
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59894
gene: LOC101818944
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: DNA-directed RNA polymerase II subunit RPB1-like
translation: MVSRFQIRAQLQAQGVQPREVRLMRNKSSASPGTANSSPGTPNSSPGTANSSPGTPNSSPGTPKSSPGTPNSSPGTPNSSPGTPKSSPGTPNSSPGTPNSSPGTPKSSPGTPNSSPGTPNSSPGTPKSSPGTPNSSPGTPNSSPGTPKSSPGTPNSSPGTPNSSPGTPKSSPGTPNSSPGTPNSSPGTANSSPGTPKSSPGTPKSSPGTPNSSPGTPKSSPGTPNSSPGTPKSSPGTPNSSPGTPKSSPGTPNSSPGTPKSSPGTPNSSPGTPKSSPGTPNSSPGTPKSSPGTPNSSPGTPKSSPGTPNSSPGTPKSSPGTPNSSPGTPKSSPGTPNSSPGTPKSSPGTPNSSPGTPKSSPGTPNSSPGTPKSSPGTPNSSPGTPKSSPGTPNSSPGTPKSSPGTANSTIILRNLHPQSSLESILAALAPFAALSAANVRVIKDRQTQLNRGFALRRGQVRDTRRGQEQG
SIO_010081: LOC101818944
subclass of: SO_0000673
so part of: LOC101818944
location: complement(join(237014..237201,243392..244528,249508..249577,251263..251280))
location: region:237014-251280:-1
so has part: feature:251263-251280:-1:exon
so has part: feature:249508-249577:-1:exon
so has part: feature:243392-244528:-1:exon
so has part: feature:237014-237201:-1:exon

XP_016160399.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:251263-251280:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:249508-249577:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:243392-244528:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:237014-237201:-1:exon

LOC107604314
type: Gene
subclass of: SO_0000704
RO_0002162: 59894
gene: LOC107604314
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 252715..256811
location: region:252715-256811:1
so has part: feature:252715-256811:1:exon
subclass of: SO_0000010

107604314
type: Gene
SIO_000068: ncbigene

position:252715:1
position: 252715
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:256811:1
position: 256811
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:252715-256811:1:exon

LOC107604314
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59894
gene: LOC107604314
product: endogenous retrovirus group K member 9 Gag polyprotein-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 13 samples with support for all annotated introns
transcript id: XM_016304919.1
SIO_010081: LOC107604314
subclass of: SO_0000673
so part of: LOC107604314
location: join(252715..253977,254195..254342,254437..256811)
location: region:252715-256811:1
so has part: feature:252715-253977:1:exon
so has part: feature:254195-254342:1:exon
so has part: feature:254437-256811:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:252715-253977:1:exon

position:253977:1
position: 253977
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:254195-254342:1:exon

position:254195:1
position: 254195
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:254342:1
position: 254342
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:254437-256811:1:exon

position:254437:1
position: 254437
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC107604314
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59894
gene: LOC107604314
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: endogenous retrovirus group K member 9 Gag polyprotein-like
translation: MDQSVSKEEGATAKLLLHTPPEREMTCDGATLCRLLLWCSKNGFPADAQSALDVGMGKEAGEVLWDAVSRGDTETEELPRVWKLVFSRLQELEREKSVATRAQSPAKVKMESPPNPSAAPSSLMEEEDGERGKKAQTDKVGMGEQSPPSLSPLPTDGPPREAPADSKIPNSVQEQLKKLQLGRDGKKLERYQKYEEEVLNCERRRGFSNEGVEMGGGGGDLTLRWKDIYKSALMEGEILPNYLFNLGGNFRGRDPKLWALPEWEIIKGTRESIRQNGLNSSLTQSFLDYIFTFHLLTPWDSKVLTSLILTPTQQLLWQSRWHDACSAAAAPNPHLAEWNPLSFEKGKMLTGQGEFAVRQKQAMLHPDILWQSQQLARDVLKTLPEDGKRIPSYSRVKQGAKEPYLEFVERLKCVLEKTELHDEERRIFLKILAVENANPACKRILKGLSVAATLEEMLEACAGVGSAQETAEFLVSALAAALKPLLQNTHSPKCYNCGKPGHLKAQCNSSKPKGKGKPSGSCRRCQKFGHGAWECRSKFRKDGSPILRNWGVGQQSD
SIO_010081: LOC107604314
subclass of: SO_0000673
so part of: LOC107604314
location: 254559..256232
location: region:254559-256232:1
so has part: feature:254559-256232:1:exon

XP_016160405.1
type: Protein
SIO_000068: ncbiprotein

position:254559:1
position: 254559
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:256232:1
position: 256232
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:254559-256232:1:exon

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 59894
estimated length: 5000
gap type: between scaffolds
so part of: sequence
location: 270445..275444
location: region:270445-275444:1
so has part: feature:270445-275444:1:region

position:270445:1
position: 270445
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:275444:1
position: 275444
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:270445-275444:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 59894
estimated length: 5000
gap type: between scaffolds
so part of: sequence
location: 282088..287087
location: region:282088-287087:1
so has part: feature:282088-287087:1:region

position:282088:1
position: 282088
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:287087:1
position: 287087
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:282088-287087:1:region

LOC107604312
type: Gene
subclass of: SO_0000704
RO_0002162: 59894
gene: LOC107604312
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(312631..313294)
location: region:312631-313294:-1
so has part: feature:312631-313294:-1:exon
subclass of: SO_0000011

107604312
type: Gene
SIO_000068: ncbigene

position:312631:-1
position: 312631
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:313294:-1
position: 313294
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:312631-313294:-1:exon

LOC107604312
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 59894
nc RNA class: lncRNA
gene: LOC107604312
product: uncharacterized LOC107604312
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns
transcript id: XR_001612101.1
SIO_010081: LOC107604312
subclass of: SO_0000673
so part of: LOC107604312
location: complement(join(312631..313052,313250..313294))
location: region:312631-313294:-1
so has part: feature:313250-313294:-1:exon
so has part: feature:312631-313052:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:313250-313294:-1:exon

position:313250:-1
position: 313250
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:312631-313052:-1:exon

position:313052:-1
position: 313052
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC101819520
type: Gene
subclass of: SO_0000704
RO_0002162: 59894
gene: LOC101819520
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(324583..339034)
location: region:324583-339034:-1
so has part: feature:324583-339034:-1:exon
subclass of: SO_0000010

101819520
type: Gene
SIO_000068: ncbigene

position:324583:-1
position: 324583
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:339034:-1
position: 339034
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:324583-339034:-1:exon

LOC101819520
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59894
gene: LOC101819520
product: IQ motif and SEC7 domain-containing protein 2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 70% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_005061317.2
SIO_010081: LOC101819520
subclass of: SO_0000673
so part of: LOC101819520
location: complement(join(324583..324717,332799..332927,333005..333114,333425..333446,334317..334456,335484..335650,337170..337292,338216..338377,338931..339034))
location: region:324583-339034:-1
so has part: feature:338931-339034:-1:exon
so has part: feature:338216-338377:-1:exon
so has part: feature:337170-337292:-1:exon
so has part: feature:335484-335650:-1:exon
so has part: feature:334317-334456:-1:exon
so has part: feature:333425-333446:-1:exon
so has part: feature:333005-333114:-1:exon
so has part: feature:332799-332927:-1:exon
so has part: feature:324583-324717:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:338931-339034:-1:exon

position:338931:-1
position: 338931
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:338216-338377:-1:exon

position:338216:-1
position: 338216
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:338377:-1
position: 338377
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:337170-337292:-1:exon

position:337170:-1
position: 337170
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:337292:-1
position: 337292
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:335484-335650:-1:exon

position:335484:-1
position: 335484
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:335650:-1
position: 335650
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:334317-334456:-1:exon

position:334317:-1
position: 334317
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:334456:-1
position: 334456
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:333425-333446:-1:exon

position:333425:-1
position: 333425
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:333446:-1
position: 333446
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:333005-333114:-1:exon

position:333005:-1
position: 333005
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:333114:-1
position: 333114
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:332799-332927:-1:exon

position:332799:-1
position: 332799
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:332927:-1
position: 332927
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:324583-324717:-1:exon

position:324717:-1
position: 324717
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC101819520
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59894
gene: LOC101819520
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: substituted 2 bases at 2 genomic stop codons; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
transl except: (pos:complement(333426..333428),aa:OTHER)
transl except: (pos:complement(333089..333091),aa:OTHER)
product: LOW QUALITY PROTEIN: IQ motif and SEC7 domain-containing protein 2
translation: MKCYGVVTHVLGDPMIPSPQADVLGDPMGQGRAMGKPEKGIQYLIERGFLSDTPVGVAHFILERKGLSRQMIGEFLGNRQKQFNRDVLDCVVDEMDFSGMELDEALRKFQSHIRVQGEAQKVERLIEAFSQRYCVCNAALLRQFRNPDTIFILAFAIILLNTDMYSPSVKAERKMKLEDFIKNLRGVDNGEDIPREMLVGIYQRIQSRELRTNDDHVSQVQAVERMIVGKKPVLSLPHXCAVPAPLMXLYEVPDPNRPQRLGLHQREVFLFNDLLVVTKIFQKKKILVTYSFRQSFPLVEMHMQLFQNACEPHGACGGTATPTDTKPRPHSDPPREPPHVPIWPRPLERNHAHTSAMPRPQSR
SIO_010081: LOC101819520
subclass of: SO_0000673
so part of: LOC101819520
location: complement(join(324583..324717,332799..332927,333005..333114,333425..333446,334317..334456,335484..335650,337170..337292,338216..338377,338931..339034))
location: region:324583-339034:-1
so has part: feature:338931-339034:-1:exon
so has part: feature:338216-338377:-1:exon
so has part: feature:337170-337292:-1:exon
so has part: feature:335484-335650:-1:exon
so has part: feature:334317-334456:-1:exon
so has part: feature:333425-333446:-1:exon
so has part: feature:333005-333114:-1:exon
so has part: feature:332799-332927:-1:exon
so has part: feature:324583-324717:-1:exon

XP_005061374.2
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:338931-339034:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:338216-338377:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:337170-337292:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:335484-335650:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:334317-334456:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:333425-333446:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:333005-333114:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:332799-332927:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:324583-324717:-1:exon

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 59894
estimated length: 5000
gap type: between scaffolds
so part of: sequence
location: 324783..329782
location: region:324783-329782:1
so has part: feature:324783-329782:1:region

position:324783:1
position: 324783
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:329782:1
position: 329782
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:324783-329782:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 59894
estimated length: 5000
gap type: between scaffolds
so part of: sequence
location: 340324..345323
location: region:340324-345323:1
so has part: feature:340324-345323:1:region

position:340324:1
position: 340324
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:345323:1
position: 345323
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:340324-345323:1:region

LOC101819714
type: Gene
subclass of: SO_0000704
RO_0002162: 59894
gene: LOC101819714
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(369759..>377976)
location: region:369759-377976:-1
so has part: feature:369759-377976:-1:exon
subclass of: SO_0000010

101819714
type: Gene
SIO_000068: ncbigene

position:369759:-1
position: 369759
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:377976:-1
position: 377976
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:369759-377976:-1:exon

LOC101819714
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59894
gene: LOC101819714
product: structural maintenance of chromosomes protein 1A-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 90% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_016304914.1
SIO_010081: LOC101819714
subclass of: SO_0000673
so part of: LOC101819714
location: complement(join(369759..369780,370293..370444,372735..372932,377116..377280,377821..>377976))
location: region:369759-377976:-1
so has part: feature:377821-377976:-1:exon
so has part: feature:377116-377280:-1:exon
so has part: feature:372735-372932:-1:exon
so has part: feature:370293-370444:-1:exon
so has part: feature:369759-369780:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:377821-377976:-1:exon

position:377821:-1
position: 377821
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:377116-377280:-1:exon

position:377116:-1
position: 377116
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:377280:-1
position: 377280
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:372735-372932:-1:exon

position:372735:-1
position: 372735
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:372932:-1
position: 372932
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:370293-370444:-1:exon

position:370293:-1
position: 370293
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:370444:-1
position: 370444
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:369759-369780:-1:exon

position:369780:-1
position: 369780
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC101819714
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59894
gene: LOC101819714
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: structural maintenance of chromosomes protein 1A-like
translation: REMTHLQKEVTAIETKLEQKRSDRHNLLQACKMQDIRLPLARGSMDDISQEEGGGTGEEPGGSSQRSSSLYAREALIEIDYSDLPEELKVRRAHLGTHLGVGTHLGTCPLCPLCPLCPLCAEFEAARKRAKKAKQAFEQMKKERFDRFNSCFEAVATNIDEIYKALSRNSSAQAFLGPENPEEPYLDGINYNCVAPGKRFRPMDNLSGGEKTVAALALLFAIHRWDPKIS
SIO_010081: LOC101819714
subclass of: SO_0000673
so part of: LOC101819714
location: complement(join(369759..369780,370293..370444,372735..372932,377116..377280,377821..>377976))
location: region:369759-377976:-1
so has part: feature:377821-377976:-1:exon
so has part: feature:377116-377280:-1:exon
so has part: feature:372735-372932:-1:exon
so has part: feature:370293-370444:-1:exon
so has part: feature:369759-369780:-1:exon

XP_016160400.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:377821-377976:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:377116-377280:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:372735-372932:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:370293-370444:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:369759-369780:-1:exon

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 59894
estimated length: 5000
gap type: between scaffolds
so part of: sequence
location: 378030..383029
location: region:378030-383029:1
so has part: feature:378030-383029:1:region

position:378030:1
position: 378030
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:383029:1
position: 383029
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:378030-383029:1:region

GATA1
type: Gene
subclass of: SO_0000704
RO_0002162: 59894
gene: GATA1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(392661..394974)
location: region:392661-394974:-1
so has part: feature:392661-394974:-1:exon
subclass of: SO_0000010

101820256
type: Gene
SIO_000068: ncbigene

position:392661:-1
position: 392661
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:394974:-1
position: 394974
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:392661-394974:-1:exon

GATA1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59894
gene: GATA1
product: GATA binding protein 1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 87% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_005061320.2
SIO_010081: GATA1
subclass of: SO_0000673
so part of: GATA1
location: complement(join(392661..392862,394009..394369,394910..394974))
location: region:392661-394974:-1
so has part: feature:394910-394974:-1:exon
so has part: feature:394009-394369:-1:exon
so has part: feature:392661-392862:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:394910-394974:-1:exon

position:394910:-1
position: 394910
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:394009-394369:-1:exon

position:394009:-1
position: 394009
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:394369:-1
position: 394369
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:392661-392862:-1:exon

position:392862:-1
position: 392862
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

GATA1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59894
gene: GATA1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: erythroid transcription factor
translation: MGHRLVCVGLYWFILVHTALYWSILVCTGSYWSLLVHTGPYWSVSVLTGLYCSVPVHTGLYWSLLARTALYWSVPVHSGLYWSVLVLTGRYWAEARECVNCGATATPLWRRDGTGHYLCNACGLYHRLNGHNRPLIRPKKRLLVSKRAGTVCSNCQTSTTTLWRRSPRGDPVCNACGLYYKLHRVREHPKIATK
SIO_010081: GATA1
subclass of: SO_0000673
so part of: GATA1
location: complement(join(392704..392862,394009..394369,394910..394974))
location: region:392704-394974:-1
so has part: feature:394910-394974:-1:exon
so has part: feature:394009-394369:-1:exon
so has part: feature:392704-392862:-1:exon

XP_005061377.1
type: Protein
SIO_000068: ncbiprotein

position:392704:-1
position: 392704
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:394910-394974:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:394009-394369:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:392704-392862:-1:exon

CDK20
type: Gene
subclass of: SO_0000704
RO_0002162: 59894
gene: CDK20
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(<404261..410886)
location: region:404261-410886:-1
so has part: feature:404261-410886:-1:exon
subclass of: SO_0000010

101820448
type: Gene
SIO_000068: ncbigene

position:404261:-1
position: 404261
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:410886:-1
position: 410886
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:404261-410886:-1:exon

CDK20
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59894
gene: CDK20
product: cyclin-dependent kinase 20
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 81% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_005061321.1
SIO_010081: CDK20
subclass of: SO_0000673
so part of: CDK20
location: complement(join(<404261..404320,404814..404937,407057..407119,407203..407324,407557..407651,407682..407775,408747..408860,410791..410886))
location: region:404261-410886:-1
so has part: feature:410791-410886:-1:exon
so has part: feature:408747-408860:-1:exon
so has part: feature:407682-407775:-1:exon
so has part: feature:407557-407651:-1:exon
so has part: feature:407203-407324:-1:exon
so has part: feature:407057-407119:-1:exon
so has part: feature:404814-404937:-1:exon
so has part: feature:404261-404320:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:410791-410886:-1:exon

position:410791:-1
position: 410791
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:408747-408860:-1:exon

position:408747:-1
position: 408747
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:408860:-1
position: 408860
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:407682-407775:-1:exon

position:407682:-1
position: 407682
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:407775:-1
position: 407775
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:407557-407651:-1:exon

position:407557:-1
position: 407557
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:407651:-1
position: 407651
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:407203-407324:-1:exon

position:407203:-1
position: 407203
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:407324:-1
position: 407324
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:407057-407119:-1:exon

position:407057:-1
position: 407057
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:407119:-1
position: 407119
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:404814-404937:-1:exon

position:404814:-1
position: 404814
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:404937:-1
position: 404937
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:404261-404320:-1:exon

position:404320:-1
position: 404320
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

CDK20
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59894
gene: CDK20
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: cyclin-dependent kinase 20
translation: MPGGRGLVAKGGVWLPGSRTVLLRTGYVAGGRTGELVALKKVPLRRPEDGVPPQTLREIKALQEIEAHPHVIRLRAAFAQGPAVVLALELLVGDLGGLLRAAPAPLPPARVRALLAMTLRGLGHMHRHRLLHRDLKPANLLLDSAGRLKLADFGLARVLGPPPGRPYSHQVATRWYRAPELLYGARHYDEGVDLWAVGCIFGELLTLSPLFPGENDIEQLCCVLRALGTPSPRDWPELAELPDFPKLRFRPRAPPG
SIO_010081: CDK20
subclass of: SO_0000673
so part of: CDK20
location: complement(join(<404261..404320,404814..404937,407057..407119,407203..407324,407557..407651,407682..407775,408747..408860,410791..410886))
location: region:404261-410886:-1
so has part: feature:410791-410886:-1:exon
so has part: feature:408747-408860:-1:exon
so has part: feature:407682-407775:-1:exon
so has part: feature:407557-407651:-1:exon
so has part: feature:407203-407324:-1:exon
so has part: feature:407057-407119:-1:exon
so has part: feature:404814-404937:-1:exon
so has part: feature:404261-404320:-1:exon

XP_005061378.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:410791-410886:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:408747-408860:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:407682-407775:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:407557-407651:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:407203-407324:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:407057-407119:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:404814-404937:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:404261-404320:-1:exon

PORCN
type: Gene
subclass of: SO_0000704
RO_0002162: 59894
gene: PORCN
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: <413060..420349
location: region:413060-420349:1
so has part: feature:413060-420349:1:exon
subclass of: SO_0000010

101819915
type: Gene
SIO_000068: ncbigene

position:413060:1
position: 413060
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:420349:1
position: 420349
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:413060-420349:1:exon

PORCN
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59894
gene: PORCN
product: porcupine homolog (Drosophila)
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns
transcript id: XM_005061319.1
SIO_010081: PORCN
subclass of: SO_0000673
so part of: PORCN
location: join(<413060..413138,413725..413906,414768..414898,416548..416673,417426..417526,417968..418044,418734..418797,419324..419409,419808..419918,420009..420349)
location: region:413060-420349:1
so has part: feature:413060-413138:1:exon
so has part: feature:413725-413906:1:exon
so has part: feature:414768-414898:1:exon
so has part: feature:416548-416673:1:exon
so has part: feature:417426-417526:1:exon
so has part: feature:417968-418044:1:exon
so has part: feature:418734-418797:1:exon
so has part: feature:419324-419409:1:exon
so has part: feature:419808-419918:1:exon
so has part: feature:420009-420349:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:413060-413138:1:exon

position:413138:1
position: 413138
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:413725-413906:1:exon

position:413725:1
position: 413725
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:413906:1
position: 413906
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:414768-414898:1:exon

position:414768:1
position: 414768
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:414898:1
position: 414898
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:416548-416673:1:exon

position:416548:1
position: 416548
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:416673:1
position: 416673
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:417426-417526:1:exon

position:417426:1
position: 417426
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:417526:1
position: 417526
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:417968-418044:1:exon

position:417968:1
position: 417968
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:418044:1
position: 418044
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:418734-418797:1:exon

position:418734:1
position: 418734
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:418797:1
position: 418797
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:419324-419409:1:exon

position:419324:1
position: 419324
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:419409:1
position: 419409
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:419808-419918:1:exon

position:419808:1
position: 419808
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:419918:1
position: 419918
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:420009-420349:1:exon

position:420009:1
position: 420009
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

PORCN
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59894
gene: PORCN
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: protein-serine O-palmitoleoyltransferase porcupine
translation: CTELGVTGSPLRELHMVDTVTWHKMRGAQMVVAMKAVSLGFDLDRGPAGAEPSPAQVLGYLCSPGSVVFGPWEPFSTYLRAVEGPPLSLAWLRKALCSLALALLCLLVSTCLAPFLFSSLLPLYGAQALRRWLRAYESALSFHFSNYFVAFLSEATATLAGSGTSLQHDHLHWDLAVSRPMRVELPRSMAEVVTNWNLPMSRWLHTYVFQTARRLGTFAAVLGTYAASALLHGLSFHLAAVLLSLGLITYAEHALRQRLAAIFDACVLSKRCPPHCSHRNKNTLWVRALNGALGALALFHLSYLGALFDVEAEDTVEEQGYGMAYTVRKWSELNWASHWVTLGCWVLARLLR
SIO_010081: PORCN
subclass of: SO_0000673
so part of: PORCN
location: join(<413060..413138,413725..413906,414768..414898,416548..416673,417426..417526,417968..418044,418734..418797,419324..419409,419808..419918,420009..420110)
location: region:413060-420110:1
so has part: feature:413060-413138:1:exon
so has part: feature:413725-413906:1:exon
so has part: feature:414768-414898:1:exon
so has part: feature:416548-416673:1:exon
so has part: feature:417426-417526:1:exon
so has part: feature:417968-418044:1:exon
so has part: feature:418734-418797:1:exon
so has part: feature:419324-419409:1:exon
so has part: feature:419808-419918:1:exon
so has part: feature:420009-420110:1:exon

XP_005061376.1
type: Protein
SIO_000068: ncbiprotein

position:420110:1
position: 420110
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:413060-413138:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:413725-413906:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:414768-414898:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:416548-416673:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:417426-417526:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:417968-418044:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:418734-418797:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:419324-419409:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:419808-419918:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:420009-420110:1:exon

LOC101820649
type: Gene
subclass of: SO_0000704
RO_0002162: 59894
gene: LOC101820649
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(420875..>425692)
location: region:420875-425692:-1
so has part: feature:420875-425692:-1:exon
subclass of: SO_0000010

101820649
type: Gene
SIO_000068: ncbigene

position:420875:-1
position: 420875
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:425692:-1
position: 425692
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:420875-425692:-1:exon

LOC101820649
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59894
gene: LOC101820649
product: UDP-galactose translocator-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 91% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_005061322.1
SIO_010081: LOC101820649
subclass of: SO_0000673
so part of: LOC101820649
location: complement(join(420875..420902,423988..424145,424969..425120,425512..>425692))
location: region:420875-425692:-1
so has part: feature:425512-425692:-1:exon
so has part: feature:424969-425120:-1:exon
so has part: feature:423988-424145:-1:exon
so has part: feature:420875-420902:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:425512-425692:-1:exon

position:425512:-1
position: 425512
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:424969-425120:-1:exon

position:424969:-1
position: 424969
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:425120:-1
position: 425120
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:423988-424145:-1:exon

position:423988:-1
position: 423988
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:424145:-1
position: 424145
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:420875-420902:-1:exon

position:420902:-1
position: 420902
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC101820649
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59894
gene: LOC101820649
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: UDP-galactose translocator-like
translation: PRRVKYASLGVLVLQNASLVLSIRYVRTLPGERFLPTTAVVMAEAMKGSACLLLLLIQHRGSVRQTAVTLHEAVVGQFGDTLRLAVPSLIYTLQNNLQYVAISNLPAATFQVTYQLKILTTALFSVLLLGTALSRLQWLSLALLFAGVALVQAEQARAVPAAAASPNKDKGT
SIO_010081: LOC101820649
subclass of: SO_0000673
so part of: LOC101820649
location: complement(join(420875..420902,423988..424145,424969..425120,425512..>425692))
location: region:420875-425692:-1
so has part: feature:425512-425692:-1:exon
so has part: feature:424969-425120:-1:exon
so has part: feature:423988-424145:-1:exon
so has part: feature:420875-420902:-1:exon

XP_005061379.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:425512-425692:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:424969-425120:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:423988-424145:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:420875-420902:-1:exon

LOC101820847
type: Gene
subclass of: SO_0000704
RO_0002162: 59894
gene: LOC101820847
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 431336..439532
location: region:431336-439532:1
so has part: feature:431336-439532:1:exon
subclass of: SO_0000010

101820847
type: Gene
SIO_000068: ncbigene

position:431336:1
position: 431336
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:439532:1
position: 439532
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:431336-439532:1:exon

LOC101820847
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59894
gene: LOC101820847
product: selenide, water dikinase 1-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 80% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_016304915.1
SIO_010081: LOC101820847
subclass of: SO_0000673
so part of: LOC101820847
location: join(431336..431467,432768..432877,433025..433184,435213..435367,436536..436626,436887..436986,437543..437755,439191..439532)
location: region:431336-439532:1
so has part: feature:431336-431467:1:exon
so has part: feature:432768-432877:1:exon
so has part: feature:433025-433184:1:exon
so has part: feature:435213-435367:1:exon
so has part: feature:436536-436626:1:exon
so has part: feature:436887-436986:1:exon
so has part: feature:437543-437755:1:exon
so has part: feature:439191-439532:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:431336-431467:1:exon

position:431467:1
position: 431467
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:432768-432877:1:exon

position:432768:1
position: 432768
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:432877:1
position: 432877
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:433025-433184:1:exon

position:433025:1
position: 433025
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:433184:1
position: 433184
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:435213-435367:1:exon

position:435213:1
position: 435213
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:435367:1
position: 435367
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:436536-436626:1:exon

position:436536:1
position: 436536
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:436626:1
position: 436626
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:436887-436986:1:exon

position:436887:1
position: 436887
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:436986:1
position: 436986
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:437543-437755:1:exon

position:437543:1
position: 437543
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:437755:1
position: 437755
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:439191-439532:1:exon

position:439191:1
position: 439191
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC101820847
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59894
gene: LOC101820847
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: selenide, water dikinase 1-like
translation: MPGSVPPMLPSAPLSALCPPCRARCPPCCPQGPPERSVPPTPGSFYPRPPKLQLGLPHIPPGDPRSHMGTPSPILALPDLRGYPSPVLHAPNPFSPFQGRIACANVLSDLYAMGVTECDNVLMLLSVSQRMTEEERDKVMPLIIQGFRDAAEDGGTSVTGGQTVLNPWVIVGGVATAVCQSSEFIMPDSAVPGDVLVLTKPLGTHMAVTAHQWLDIPERWNKIKLVVTREEVELAYQEAVSSMATLNRTAAGLMRAFGAHAATDVTGFGVLGHARALAAQQRLDVAFVIHNLPVIAKMAAVSKACGGRGGLLQGTAPETSGGLLVVLPRAQAARFCAELKAPGRAEGLQAWIVGVVEKGPRGARVIDKPRLIEVPPRGAPLRPDSPGTPPPEPPRAPF
SIO_010081: LOC101820847
subclass of: SO_0000673
so part of: LOC101820847
location: join(431336..431467,432768..432877,433025..433184,435213..435367,436536..436626,436887..436986,437543..437755,439191..439426)
location: region:431336-439426:1
so has part: feature:431336-431467:1:exon
so has part: feature:432768-432877:1:exon
so has part: feature:433025-433184:1:exon
so has part: feature:435213-435367:1:exon
so has part: feature:436536-436626:1:exon
so has part: feature:436887-436986:1:exon
so has part: feature:437543-437755:1:exon
so has part: feature:439191-439426:1:exon

XP_016160401.1
type: Protein
SIO_000068: ncbiprotein

position:439426:1
position: 439426
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:431336-431467:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:432768-432877:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:433025-433184:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:435213-435367:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:436536-436626:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:436887-436986:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:437543-437755:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:439191-439426:1:exon

LOC101821038
type: Gene
subclass of: SO_0000704
RO_0002162: 59894
gene: LOC101821038
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(440451..451218)
location: region:440451-451218:-1
so has part: feature:440451-451218:-1:exon
subclass of: SO_0000010

101821038
type: Gene
SIO_000068: ncbigene

position:440451:-1
position: 440451
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:451218:-1
position: 451218
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:440451-451218:-1:exon

LOC101821038
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59894
gene: LOC101821038
product: uncharacterized LOC101821038
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 66% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_016304916.1
SIO_010081: LOC101821038
subclass of: SO_0000673
so part of: LOC101821038
location: complement(join(440451..440926,441220..441257,441952..442234,442289..442410,442468..442638,442730..442804,446042..446120,446190..446450,447483..447623,448487..448596,448891..448977,449437..449452,450029..450073,451190..451218))
location: region:440451-451218:-1
so has part: feature:451190-451218:-1:exon
so has part: feature:450029-450073:-1:exon
so has part: feature:449437-449452:-1:exon
so has part: feature:448891-448977:-1:exon
so has part: feature:448487-448596:-1:exon
so has part: feature:447483-447623:-1:exon
so has part: feature:446190-446450:-1:exon
so has part: feature:446042-446120:-1:exon
so has part: feature:442730-442804:-1:exon
so has part: feature:442468-442638:-1:exon
so has part: feature:442289-442410:-1:exon
so has part: feature:441952-442234:-1:exon
so has part: feature:441220-441257:-1:exon
so has part: feature:440451-440926:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:451190-451218:-1:exon

position:451190:-1
position: 451190
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:450029-450073:-1:exon

position:450029:-1
position: 450029
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:450073:-1
position: 450073
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:449437-449452:-1:exon

position:449437:-1
position: 449437
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:449452:-1
position: 449452
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:448891-448977:-1:exon

position:448891:-1
position: 448891
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:448977:-1
position: 448977
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:448487-448596:-1:exon

position:448487:-1
position: 448487
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:448596:-1
position: 448596
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:447483-447623:-1:exon

position:447483:-1
position: 447483
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:447623:-1
position: 447623
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:446190-446450:-1:exon

position:446190:-1
position: 446190
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:446450:-1
position: 446450
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:446042-446120:-1:exon

position:446042:-1
position: 446042
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:446120:-1
position: 446120
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:442730-442804:-1:exon

position:442730:-1
position: 442730
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:442804:-1
position: 442804
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:442468-442638:-1:exon

position:442468:-1
position: 442468
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:442638:-1
position: 442638
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:442289-442410:-1:exon

position:442289:-1
position: 442289
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:442410:-1
position: 442410
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:441952-442234:-1:exon

position:441952:-1
position: 441952
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:442234:-1
position: 442234
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:441220-441257:-1:exon

position:441220:-1
position: 441220
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:441257:-1
position: 441257
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:440451-440926:-1:exon

position:440926:-1
position: 440926
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC101821038
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59894
gene: LOC101821038
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: uncharacterized protein LOC101821038
translation: MPSAPPVPPSSEDQLRQRLVEAEAELVALRARVAVAELRAQDVSRAAELQLQGLRRQLEQDKAQVQAQVTSLLGELRESQNRLERSRAEREHLERRARSDAERCQQLEEVTQGHQVQLDQLRLQVTNLETALRVERRGATEEKRKLVQLQAAYHHLFQEYDAHIKASLEGDKQSQVRDRDTGAAGDTEGHVPSLGEPGVAPCSLCHSPGDPVVAAWPHPSPLETPGMSLGSSGQGYSGGDTGDPQMSLSLPGDIMGTQVDVLNVGLGGSGRIKGDLGVPRGADTPRVDFKAEQGESWGGVEVLERAQWDLGNLGDPGGVLTPPPPKIQTDISKAEAGESQADISKAVFEEERAALRGFWLDLGDPDGTEMFLGDFGDPWWILRQSRWLWGIWGFWCDLWGFLWGIWGFPGGIWGSPVGSGAPDPPCGQADIYRADFEAERAAREQLHGQREALQEELNQLRLRLGGDGARYGTTPPNSLSSPKPPGGVLLPPPEEGPDLCCPKCQYKAPDMDTLQIHVMDCIK
SIO_010081: LOC101821038
subclass of: SO_0000673
so part of: LOC101821038
location: complement(join(440812..440926,441220..441257,441952..442234,442289..442410,442468..442638,442730..442804,446042..446120,446190..446450,447483..447623,448487..448596,448891..448977,449437..449452,450029..450073,451190..451218))
location: region:440812-451218:-1
so has part: feature:451190-451218:-1:exon
so has part: feature:450029-450073:-1:exon
so has part: feature:449437-449452:-1:exon
so has part: feature:448891-448977:-1:exon
so has part: feature:448487-448596:-1:exon
so has part: feature:447483-447623:-1:exon
so has part: feature:446190-446450:-1:exon
so has part: feature:446042-446120:-1:exon
so has part: feature:442730-442804:-1:exon
so has part: feature:442468-442638:-1:exon
so has part: feature:442289-442410:-1:exon
so has part: feature:441952-442234:-1:exon
so has part: feature:441220-441257:-1:exon
so has part: feature:440812-440926:-1:exon

XP_016160402.1
type: Protein
SIO_000068: ncbiprotein

position:440812:-1
position: 440812
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:451190-451218:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:450029-450073:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:449437-449452:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:448891-448977:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:448487-448596:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:447483-447623:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:446190-446450:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:446042-446120:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:442730-442804:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:442468-442638:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:442289-442410:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:441952-442234:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:441220-441257:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:440812-440926:-1:exon

G6PD
type: Gene
subclass of: SO_0000704
RO_0002162: 59894
gene: G6PD
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: <452162..>462464
location: region:452162-462464:1
so has part: feature:452162-462464:1:exon
subclass of: SO_0000010

107604311
type: Gene
SIO_000068: ncbigene

position:452162:1
position: 452162
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:462464:1
position: 462464
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:452162-462464:1:exon

G6PD
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59894
gene: G6PD
product: glucose-6-phosphate dehydrogenase
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 39 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XM_016304917.1
SIO_010081: G6PD
subclass of: SO_0000673
so part of: G6PD
location: join(<452162..452197,455896..455933,456958..457066,457518..457735,458224..458379,458468..458593,458681..458774,459215..459401,460506..460741,461251..461327,462362..>462464)
location: region:452162-462464:1
so has part: feature:452162-452197:1:exon
so has part: feature:455896-455933:1:exon
so has part: feature:456958-457066:1:exon
so has part: feature:457518-457735:1:exon
so has part: feature:458224-458379:1:exon
so has part: feature:458468-458593:1:exon
so has part: feature:458681-458774:1:exon
so has part: feature:459215-459401:1:exon
so has part: feature:460506-460741:1:exon
so has part: feature:461251-461327:1:exon
so has part: feature:462362-462464:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:452162-452197:1:exon

position:452197:1
position: 452197
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:455896-455933:1:exon

position:455896:1
position: 455896
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:455933:1
position: 455933
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:456958-457066:1:exon

position:456958:1
position: 456958
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:457066:1
position: 457066
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:457518-457735:1:exon

position:457518:1
position: 457518
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:457735:1
position: 457735
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:458224-458379:1:exon

position:458224:1
position: 458224
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:458379:1
position: 458379
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:458468-458593:1:exon

position:458468:1
position: 458468
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:458593:1
position: 458593
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:458681-458774:1:exon

position:458681:1
position: 458681
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:458774:1
position: 458774
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:459215-459401:1:exon

position:459215:1
position: 459215
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:459401:1
position: 459401
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:460506-460741:1:exon

position:460506:1
position: 460506
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:460741:1
position: 460741
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:461251-461327:1:exon

position:461251:1
position: 461251
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:461327:1
position: 461327
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:462362-462464:1:exon

position:462362:1
position: 462362
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

G6PD
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59894
gene: G6PD
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: glucose-6-phosphate 1-dehydrogenase
translation: PRRRRECGRSGKGDLARKKIYPTIWWLFRDGLLPDATRVVGFARSPLTVELIREQTLPYLKVTSEDGPRLAEFLSLQSFVRGQYGDEASFRALDAHLRGLPGGDRAHRLFYLALPPSVYTPVTQHLRALCMGQGWNRVIVEKPFGRDLGSSEELSAHLSSLFCEEQIYRMDHYLGKEMVQSLMVLRFGNRIFGPIWNRDNIACVVLTFKEPFGTEGRGGYFDDFGIIRDVMQNHLLQLLCLVAMEKPASTNPDDVRDEKVKVLKCISPVELQDVVLGQYVGNPEGPPEAQKGYLDDPTVPPGSTTPTFATAVLRVANERWDGVPFVLRCGKALNERKAEVRLQFREVPGDIFARQCKRNELVVRVQPCEAVYAKLNTKKPGMYLRPEESELDLTYGSRYKDVKLPDAYERLLLDVICGNQMHFVRSDELREAWRIFTPLLHQIEQRREPPIPYPYGRGPP
SIO_010081: G6PD
subclass of: SO_0000673
so part of: G6PD
location: join(<452162..452197,455896..455933,456958..457066,457518..457735,458224..458379,458468..458593,458681..458774,459215..459401,460506..460741,461251..461327,462362..>462464)
location: region:452162-462464:1
so has part: feature:452162-452197:1:exon
so has part: feature:455896-455933:1:exon
so has part: feature:456958-457066:1:exon
so has part: feature:457518-457735:1:exon
so has part: feature:458224-458379:1:exon
so has part: feature:458468-458593:1:exon
so has part: feature:458681-458774:1:exon
so has part: feature:459215-459401:1:exon
so has part: feature:460506-460741:1:exon
so has part: feature:461251-461327:1:exon
so has part: feature:462362-462464:1:exon

XP_016160403.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:452162-452197:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:455896-455933:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:456958-457066:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:457518-457735:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:458224-458379:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:458468-458593:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:458681-458774:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:459215-459401:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:460506-460741:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:461251-461327:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:462362-462464:1:exon