Ficedula albicollis isolate OC2 chromosome 7, FicAlb1.5, whole genome shotgun sequence.
type: Entry
definition: Ficedula albicollis isolate OC2 chromosome 7, FicAlb1.5, whole genome shotgun sequence.
sequence version: NC_021679.1
sequence date: 2016-04-20
sequence: sequence
division: CON
label: NC_021679.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA208061
dblink: SAMN02981387
keyword: WGS
keyword: RefSeq
source: Ficedula albicollis (collared flycatcher)
organism: Ficedula albicollis
taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Muscicapidae; Ficedula.
reference: 1
references: 23103876
reference: 2
references: 9023104
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCM001996.1.\nAssembly name: FicAlb1.5\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by Uppsala University on 2013/06/24.\nThe original whole-genome shotgun project has the accession\nAGTO00000000.2.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Uppsala University\nAssembly Method :: SOAPdenovo v. 1.05\nAssembly Name :: FicAlb1.5\nGenome Coverage :: 60.0x\nSequencing Technology :: Illumina GAII; Illumina HiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Status :: Full annotation\nAnnotation Version :: Ficedula albicollis Annotation\n Release 101\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 7.0\nAnnotation Method :: Best-placed RefSeq; Gnomon\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\n##Genome-Annotation-Data-END##

sequence
subclass of: SO_0000340
sequence length: 39412007
topology: linear
so has quality: SO_0000987
location: 1..39412007
location: region:1-39412007:1
RO_0002162: 59894

NC_021679
type: RefSeq
SIO_000068: refseq

PRJNA208061
type: BioProject
SIO_000068: bioproject

SAMN02981387
type: BioSample
SIO_000068: biosample

1
title: The genomic landscape of species divergence in Ficedula flycatchers
author: Ellegren, H.
author: Smeds, L.
author: Burri, R.
author: Olason, P.I.
author: Backstrom, N.
author: Kawakami, T.
author: Kunstner, A.
author: Makinen, H.
author: Nadachowska-Brzyska, K.
author: Qvarnstrom, A.
author: Uebbing, S.
author: Wolf, J.B.
journal: Nature
volume: 491
issue: 7426
pages: 756-760
year: 2012
pubmed: 23103876

23103876
type: PubMed
SIO_000068: pubmed

2
title: tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence
author: Lowe, T.M.
author: Eddy, S.R.
journal: Nucleic Acids Res.
volume: 25
issue: 5
pages: 955-964
year: 1997
pubmed: 9023104
comments: This is the methods paper for tRNAscan-SE.

9023104
type: PubMed
SIO_000068: pubmed

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:39412007:1
position: 39412007
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-39412007:1:source
so part of: sequence
organism: Ficedula albicollis
mol type: genomic DNA
isolate: OC2
chromosome: 7
sex: male
country: Sweden: Oland
collection date: 2009

59894
type: Taxonomy
SIO_000068: taxonomy

POFUT2
type: Gene
subclass of: SO_0000704
RO_0002162: 59894
gene: POFUT2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(55995..68490)
location: region:55995-68490:-1
so has part: feature:55995-68490:-1:exon
subclass of: SO_0000010

101806242
type: Gene
SIO_000068: ncbigene

position:55995:-1
position: 55995
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:68490:-1
position: 68490
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:55995-68490:-1:exon

POFUT2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59894
gene: POFUT2
product: protein O-fucosyltransferase 2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 14 Proteins, and 92% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_016299626.1
SIO_010081: POFUT2
subclass of: SO_0000673
so part of: POFUT2
location: complement(join(55995..58221,58502..58625,60133..60313,60840..60965,62417..62483,64583..64693,64986..65130,66115..66365,66957..67073,67558..67619,67734..67802,67889..68373,68439..68490))
location: region:55995-68490:-1
so has part: feature:68439-68490:-1:exon
so has part: feature:67889-68373:-1:exon
so has part: feature:67734-67802:-1:exon
so has part: feature:67558-67619:-1:exon
so has part: feature:66957-67073:-1:exon
so has part: feature:66115-66365:-1:exon
so has part: feature:64986-65130:-1:exon
so has part: feature:64583-64693:-1:exon
so has part: feature:62417-62483:-1:exon
so has part: feature:60840-60965:-1:exon
so has part: feature:60133-60313:-1:exon
so has part: feature:58502-58625:-1:exon
so has part: feature:55995-58221:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:68439-68490:-1:exon

position:68439:-1
position: 68439
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:67889-68373:-1:exon

position:67889:-1
position: 67889
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:68373:-1
position: 68373
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:67734-67802:-1:exon

position:67734:-1
position: 67734
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:67802:-1
position: 67802
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:67558-67619:-1:exon

position:67558:-1
position: 67558
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:67619:-1
position: 67619
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:66957-67073:-1:exon

position:66957:-1
position: 66957
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:67073:-1
position: 67073
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:66115-66365:-1:exon

position:66115:-1
position: 66115
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:66365:-1
position: 66365
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:64986-65130:-1:exon

position:64986:-1
position: 64986
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:65130:-1
position: 65130
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:64583-64693:-1:exon

position:64583:-1
position: 64583
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:64693:-1
position: 64693
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:62417-62483:-1:exon

position:62417:-1
position: 62417
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:62483:-1
position: 62483
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:60840-60965:-1:exon

position:60840:-1
position: 60840
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:60965:-1
position: 60965
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:60133-60313:-1:exon

position:60133:-1
position: 60133
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:60313:-1
position: 60313
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:58502-58625:-1:exon

position:58502:-1
position: 58502
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:58625:-1
position: 58625
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:55995-58221:-1:exon

position:58221:-1
position: 58221
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

POFUT2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59894
gene: POFUT2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: GDP-fucose protein O-fucosyltransferase 2
translation: MGRGPVEKWVGLRRPQDVGGRRLTDDKRVGGVPVQGRGLFGWAGYRLMMRWWAGLRGGVFWWAGPPLAAGGCWRCHEVPVRRAPLRRTVCALRAALGVSRFDVGLVCAGNALMQRLNGDYRHCPEPTDVLSFPFHQVAPGELPRPRCRDEYNLGDIFLGVEYIHQQCRETGEDFDDVLTVTAAHGLCHLLGYRHDTKPEWEQMYQKEAQILEELNRLTGSRLRGVLARLPFPAAASEPPPAALRAGHAASSLPAAAAAPRTRYLLYDVNPPEGFNLRRDVYVRVASLLKTLRKSENWVLVLPPWGRLYHWQSPDILQVRILWSEFFDIPSLNKNIPVIEYEEFLAESGGPFIEQIYVLQGFAEGWKEGTWEEKIDERPCIDQLMYSKDKHGYYRGWFWGYEETRGLNASCLSVQGSASIVAPILLKNTSAQSVMLDRAENLLHDHYGGRDYWNTRRSMVFAKHLRVVGDKFRKKYLQSTDEADKTQYKEDWTQMRVKTATALGGPYLGVHLRRRDFIWGHREDVPSLQGAVKKIHSLLETLKLEKVFVATDAVEEEIELLKKLLPEMVRFEPSLEELELYKDGGLAVIDQWICAHARYFIGTSVSTFSFRIHEEREILGFDPKTTYNRFCGEREKNCEQPTHWKIVY
SIO_010081: POFUT2
subclass of: SO_0000673
so part of: POFUT2
location: complement(join(58068..58221,58502..58625,60133..60313,60840..60965,62417..62483,64583..64693,64986..65130,66115..66365,66957..67073,67558..67619,67734..67802,67889..68373,68439..68490))
location: region:58068-68490:-1
so has part: feature:68439-68490:-1:exon
so has part: feature:67889-68373:-1:exon
so has part: feature:67734-67802:-1:exon
so has part: feature:67558-67619:-1:exon
so has part: feature:66957-67073:-1:exon
so has part: feature:66115-66365:-1:exon
so has part: feature:64986-65130:-1:exon
so has part: feature:64583-64693:-1:exon
so has part: feature:62417-62483:-1:exon
so has part: feature:60840-60965:-1:exon
so has part: feature:60133-60313:-1:exon
so has part: feature:58502-58625:-1:exon
so has part: feature:58068-58221:-1:exon

XP_016155112.1
type: Protein
SIO_000068: ncbiprotein

position:58068:-1
position: 58068
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:68439-68490:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:67889-68373:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:67734-67802:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:67558-67619:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:66957-67073:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:66115-66365:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:64986-65130:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:64583-64693:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:62417-62483:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:60840-60965:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:60133-60313:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:58502-58625:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:58068-58221:-1:exon

MCM3AP
type: Gene
subclass of: SO_0000704
RO_0002162: 59894
gene: MCM3AP
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 68540..89773
location: region:68540-89773:1
so has part: feature:68540-89773:1:exon
subclass of: SO_0000010

101821131
type: Gene
SIO_000068: ncbigene

position:68540:1
position: 68540
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:89773:1
position: 89773
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:68540-89773:1:exon

MCM3AP
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59894
gene: MCM3AP
product: minichromosome maintenance complex component 3 associated protein
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_005048937.2
SIO_010081: MCM3AP
subclass of: SO_0000673
so part of: MCM3AP
location: join(68540..68554,68585..69008,69299..69520,69595..69818,70454..70532,71759..71906,72911..73107,74094..74233,74625..74822,75036..75304,75481..75643,76200..76360,76819..77063,77858..78048,78680..78780,79587..79718,80376..80489,80636..80788,81193..81390,81690..81758,82450..82584,82989..83142,83555..83813,84143..84240,84991..85381,85499..85756,86204..86333,86970..87164,87795..87945,88064..89773)
location: region:68540-89773:1
so has part: feature:68540-68554:1:exon
so has part: feature:68585-69008:1:exon
so has part: feature:69299-69520:1:exon
so has part: feature:69595-69818:1:exon
so has part: feature:70454-70532:1:exon
so has part: feature:71759-71906:1:exon
so has part: feature:72911-73107:1:exon
so has part: feature:74094-74233:1:exon
so has part: feature:74625-74822:1:exon
so has part: feature:75036-75304:1:exon
so has part: feature:75481-75643:1:exon
so has part: feature:76200-76360:1:exon
so has part: feature:76819-77063:1:exon
so has part: feature:77858-78048:1:exon
so has part: feature:78680-78780:1:exon
so has part: feature:79587-79718:1:exon
so has part: feature:80376-80489:1:exon
so has part: feature:80636-80788:1:exon
so has part: feature:81193-81390:1:exon
so has part: feature:81690-81758:1:exon
so has part: feature:82450-82584:1:exon
so has part: feature:82989-83142:1:exon
so has part: feature:83555-83813:1:exon
so has part: feature:84143-84240:1:exon
so has part: feature:84991-85381:1:exon
so has part: feature:85499-85756:1:exon
so has part: feature:86204-86333:1:exon
so has part: feature:86970-87164:1:exon
so has part: feature:87795-87945:1:exon
so has part: feature:88064-89773:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:68540-68554:1:exon

position:68554:1
position: 68554
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:68585-69008:1:exon

position:68585:1
position: 68585
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:69008:1
position: 69008
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:69299-69520:1:exon

position:69299:1
position: 69299
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:69520:1
position: 69520
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:69595-69818:1:exon

position:69595:1
position: 69595
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:69818:1
position: 69818
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:70454-70532:1:exon

position:70454:1
position: 70454
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:70532:1
position: 70532
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:71759-71906:1:exon

position:71759:1
position: 71759
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:71906:1
position: 71906
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:72911-73107:1:exon

position:72911:1
position: 72911
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:73107:1
position: 73107
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:74094-74233:1:exon

position:74094:1
position: 74094
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:74233:1
position: 74233
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:74625-74822:1:exon

position:74625:1
position: 74625
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:74822:1
position: 74822
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:75036-75304:1:exon

position:75036:1
position: 75036
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:75304:1
position: 75304
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:75481-75643:1:exon

position:75481:1
position: 75481
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:75643:1
position: 75643
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:76200-76360:1:exon

position:76200:1
position: 76200
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:76360:1
position: 76360
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:76819-77063:1:exon

position:76819:1
position: 76819
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:77063:1
position: 77063
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:77858-78048:1:exon

position:77858:1
position: 77858
reference: sequence
type: ForwardStrandPosition
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position:78048:1
position: 78048
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:78680-78780:1:exon

position:78680:1
position: 78680
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:78780:1
position: 78780
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:79587-79718:1:exon

position:79587:1
position: 79587
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:79718:1
position: 79718
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:80376-80489:1:exon

position:80376:1
position: 80376
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:80489:1
position: 80489
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:80636-80788:1:exon

position:80636:1
position: 80636
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:80788:1
position: 80788
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:81193-81390:1:exon

position:81193:1
position: 81193
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:81390:1
position: 81390
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:81690-81758:1:exon

position:81690:1
position: 81690
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:81758:1
position: 81758
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:82450-82584:1:exon

position:82450:1
position: 82450
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:82584:1
position: 82584
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 22
SIO_000628: feature:82989-83142:1:exon

position:82989:1
position: 82989
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:83142:1
position: 83142
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 23
SIO_000628: feature:83555-83813:1:exon

position:83555:1
position: 83555
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:83813:1
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reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 24
SIO_000628: feature:84143-84240:1:exon

position:84143:1
position: 84143
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:84240:1
position: 84240
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 25
SIO_000628: feature:84991-85381:1:exon

position:84991:1
position: 84991
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:85381:1
position: 85381
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 26
SIO_000628: feature:85499-85756:1:exon

position:85499:1
position: 85499
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:85756:1
position: 85756
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 27
SIO_000628: feature:86204-86333:1:exon

position:86204:1
position: 86204
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:86333:1
position: 86333
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 28
SIO_000628: feature:86970-87164:1:exon

position:86970:1
position: 86970
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:87164:1
position: 87164
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 29
SIO_000628: feature:87795-87945:1:exon

position:87795:1
position: 87795
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:87945:1
position: 87945
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 30
SIO_000628: feature:88064-89773:1:exon

position:88064:1
position: 88064
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

MCM3AP
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59894
gene: MCM3AP
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: germinal-center associated nuclear protein
translation: MSARPPFRGPSSFPPPLRFGQPAVFGQGGGPAGLPFAPPYALGQAPAPAGNAGFSFRPPSSLGGFPTSSEASGGGGGAFPAPQFRFKAPESAAAFKPVSGGEVEKGPAAPAAFAFSSPFGFASETGPEAAVAREPFSFSPPRRAAAGGRAAAPPEKRAVMLSRPRGGILFGRTLEDLLRSQAREQRERGDGPEAERGPAEEAPPAEAREPAREDAAPAAPARRSRGSESTEALGGLPATELTAVQCKNIPDYLNDRTVLEKHFGQFVKVRRIMTRRNKKMAVLHFFDHASAVLARKKAKELHKDIVTFWQKKKTSPAKREFSSKEKKAGEDEGRQSSEEQSYQHSPLRKPLIRSSASSVMPGRSSPAKKPGLRKALQFEAELFDSSSEGQSSEGLGASLLSLSNLVGLVAETSEERYRLLDQRDKIMRQARIKRTDLGKAKTVVGTCPDMCPEKERYMRETRNQLSIFELLLGTDKVDHAAAIKEYSRSSADQEEPLPHELRPSEVLSMTMDYLVTNIMDQGEGNYREWYDFVWNRTRGIRKDITQQHLCNQLMVSLIEKCTRFHIHCAHHLCEEPMSSFDAKINNENMTKCLQSLKEMYQDLANKGIYCKSEAEFRGYNVLLNLNKGDILREVQQFHPEVRNSPEVRFAVQAFAALNSNNFVRFFKLVQAASYLNACLLHCYFNQIRKDGLKSLNIAYTVSTQRSTAFPLDHLVRMLLFKDCEEATDFISYYGLSVSDGGYVELNRSAFLEPDGLPKPQKSLFVSQKLTVSVGEVVNGGPLPPVPHHVPVSSFNGQNKYIGGSTSVDQAGSSQKPSVDATEGRVESRGVDLDATAVRVQPSPHLLPSLLPHQLVPVLPSAQPISQPAAQPESPHSKPQPGYSDTDIAEVVDGLLHDVLKGECREVGRAGAAYVAAAICASEATIEELVTEVMEEILREVAGNMLSVERQRVEEEQRRVEEERQKQEREELIKQLSQLLGVELMEEVIKEGVKEASANELRCALERDRHARIARCSEEVCGHFMELFLEDEIFQIAKETLQELQRFCKYLQRWRKAVASRTKLKRQMRAFPAAPCGLDSKHQLKALSPSAEWPIAMENLCKRFVNLGNGGKVGISCTRLNLLRNKTVHEIKVQHFCQQLVSDLAWTPLDLISLITEHIPVQQEQVFWKALLVLPSDDEYSKDDPNRILMDWLKAKFMGHKSCEKNASHTECKIQTLTLFSSPGMQGGRSIKVSVCIKVAHGALSDSELDMAETQKDLLGTNGLILLLPPRVRSEDVAEDDVYWLSALLQLKQLLQAKPFHPRVPLVVLVPGQEEEAVEKEVEDGLMLQDLISAHLISDYTVVELPSSVNDLEGTRRVSEAVGWLVSQCPASLELCSQTLQEYIEDGIDGEFAKRFYHDWKERHLAGLPSQEPGVIIELYNSVLQFLSDVASSEHLCDLSWPVTEFSEAGGSKVLPHLQWNMPDHLAWLKKAVLSFQIPYLDLPPLGAPWRPVCHMVFQYVSQIASSSHTLPLIQSQVENLLSKTYQNWKTRTTGNSHEDGPSVDEIPWDCILAVCIDHKLRDWKSPKLPVTPEAVSKDGQIRVYFFKEHLKSYTVPFSWDQARLRTQEEIRQGYDRSKIKSPKSFKKPYSISMVSGQYDSGMSVLPGQEVTIPSTDEFRDTSLAQERLLAQLQLEKIENKRFEEQLHRYLAEDMEPLGDLLGLPLYLPQSLLSTPATTCPLVKSPMSAAQEAGSQEGHKVPELEQSSALSDRLKHLQRLLRATKEAEAASKLHLSALVDMVDI
SIO_010081: MCM3AP
subclass of: SO_0000673
so part of: MCM3AP
location: join(68591..69008,69299..69520,69595..69818,70454..70532,71759..71906,72911..73107,74094..74233,74625..74822,75036..75304,75481..75643,76200..76360,76819..77063,77858..78048,78680..78780,79587..79718,80376..80489,80636..80788,81193..81390,81690..81758,82450..82584,82989..83142,83555..83813,84143..84240,84991..85381,85499..85756,86204..86333,86970..87164,87795..87945,88064..88222)
location: region:68591-88222:1
so has part: feature:68591-69008:1:exon
so has part: feature:69299-69520:1:exon
so has part: feature:69595-69818:1:exon
so has part: feature:70454-70532:1:exon
so has part: feature:71759-71906:1:exon
so has part: feature:72911-73107:1:exon
so has part: feature:74094-74233:1:exon
so has part: feature:74625-74822:1:exon
so has part: feature:75036-75304:1:exon
so has part: feature:75481-75643:1:exon
so has part: feature:76200-76360:1:exon
so has part: feature:76819-77063:1:exon
so has part: feature:77858-78048:1:exon
so has part: feature:78680-78780:1:exon
so has part: feature:79587-79718:1:exon
so has part: feature:80376-80489:1:exon
so has part: feature:80636-80788:1:exon
so has part: feature:81193-81390:1:exon
so has part: feature:81690-81758:1:exon
so has part: feature:82450-82584:1:exon
so has part: feature:82989-83142:1:exon
so has part: feature:83555-83813:1:exon
so has part: feature:84143-84240:1:exon
so has part: feature:84991-85381:1:exon
so has part: feature:85499-85756:1:exon
so has part: feature:86204-86333:1:exon
so has part: feature:86970-87164:1:exon
so has part: feature:87795-87945:1:exon
so has part: feature:88064-88222:1:exon

XP_005048994.2
type: Protein
SIO_000068: ncbiprotein

position:68591:1
position: 68591
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:88222:1
position: 88222
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:68591-69008:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:69299-69520:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:69595-69818:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:70454-70532:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:71759-71906:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:72911-73107:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:74094-74233:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:74625-74822:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:75036-75304:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:75481-75643:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:76200-76360:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:76819-77063:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:77858-78048:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:78680-78780:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:79587-79718:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:80376-80489:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:80636-80788:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:81193-81390:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:81690-81758:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:82450-82584:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:82989-83142:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:83555-83813:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:84143-84240:1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:84991-85381:1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:85499-85756:1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:86204-86333:1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:86970-87164:1:exon

urn:…
SIO_000300: 28
SIO_000628: feature:87795-87945:1:exon

urn:…
SIO_000300: 29
SIO_000628: feature:88064-88222:1:exon

TRNAS-GCU
type: Gene
subclass of: SO_0000704
RO_0002162: 59894
gene: TRNAS-GCU
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: complement(89685..89766)
location: region:89685-89766:-1
so has part: feature:89685-89766:-1:exon
subclass of: SO_0000663

107603762
type: Gene
SIO_000068: ncbigene

position:89685:-1
position: 89685
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:89766:-1
position: 89766
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:89685-89766:-1:exon

TRNAS-GCU
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 59894
gene: TRNAS-GCU
product: tRNA-Ser
inference: COORDINATES: profile:tRNAscan-SE:1.23
note: transfer RNA serine (anticodon GCU); tRNA features were annotated by tRNAscan-SE; Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:complement(89731..89733),aa:Ser,seq:gct)
SIO_010081: TRNAS-GCU
subclass of: SO_0000673
so part of: TRNAS-GCU
location: complement(89685..89766)
location: region:89685-89766:-1
so has part: feature:89685-89766:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:89685-89766:-1:exon

TRNAM-CAU
type: Gene
subclass of: SO_0000704
RO_0002162: 59894
gene: TRNAM-CAU
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: complement(90008..90080)
location: region:90008-90080:-1
so has part: feature:90008-90080:-1:exon
subclass of: SO_0000663

107603763
type: Gene
SIO_000068: ncbigene

position:90008:-1
position: 90008
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:90080:-1
position: 90080
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:90008-90080:-1:exon

TRNAM-CAU
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 59894
gene: TRNAM-CAU
product: tRNA-Met
inference: COORDINATES: profile:tRNAscan-SE:1.23
note: transfer RNA methionine (anticodon CAU); tRNA features were annotated by tRNAscan-SE; Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:complement(90045..90047),aa:Met,seq:cat)
SIO_010081: TRNAM-CAU
subclass of: SO_0000673
so part of: TRNAM-CAU
location: complement(90008..90080)
location: region:90008-90080:-1
so has part: feature:90008-90080:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:90008-90080:-1:exon

TRNAS-GCU
type: Gene
subclass of: SO_0000704
RO_0002162: 59894
gene: TRNAS-GCU
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: 90218..90299
location: region:90218-90299:1
so has part: feature:90218-90299:1:exon
subclass of: SO_0000663

107603759
type: Gene
SIO_000068: ncbigene

position:90218:1
position: 90218
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:90299:1
position: 90299
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:90218-90299:1:exon

TRNAS-GCU
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 59894
gene: TRNAS-GCU
product: tRNA-Ser
inference: COORDINATES: profile:tRNAscan-SE:1.23
note: transfer RNA serine (anticodon GCU); tRNA features were annotated by tRNAscan-SE; Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:90251..90253,aa:Ser,seq:gct)
SIO_010081: TRNAS-GCU
subclass of: SO_0000673
so part of: TRNAS-GCU
location: 90218..90299
location: region:90218-90299:1
so has part: feature:90218-90299:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:90218-90299:1:exon

TRNAP-AGG
type: Gene
subclass of: SO_0000704
RO_0002162: 59894
gene: TRNAP-AGG
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: 95668..95739
location: region:95668-95739:1
so has part: feature:95668-95739:1:exon
subclass of: SO_0000663

107603770
type: Gene
SIO_000068: ncbigene

position:95668:1
position: 95668
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:95739:1
position: 95739
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:95668-95739:1:exon

TRNAP-AGG
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 59894
gene: TRNAP-AGG
product: tRNA-Pro
inference: COORDINATES: profile:tRNAscan-SE:1.23
note: transfer RNA proline (anticodon AGG); tRNA features were annotated by tRNAscan-SE; Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:95700..95702,aa:Pro,seq:agg)
SIO_010081: TRNAP-AGG
subclass of: SO_0000673
so part of: TRNAP-AGG
location: 95668..95739
location: region:95668-95739:1
so has part: feature:95668-95739:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:95668-95739:1:exon

TRNAA-UGC
type: Gene
subclass of: SO_0000704
RO_0002162: 59894
gene: TRNAA-UGC
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: complement(96042..96113)
location: region:96042-96113:-1
so has part: feature:96042-96113:-1:exon
subclass of: SO_0000663

107603764
type: Gene
SIO_000068: ncbigene

position:96042:-1
position: 96042
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:96113:-1
position: 96113
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:96042-96113:-1:exon

TRNAA-UGC
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 59894
gene: TRNAA-UGC
product: tRNA-Ala
inference: COORDINATES: profile:tRNAscan-SE:1.23
note: transfer RNA alanine (anticodon UGC); tRNA features were annotated by tRNAscan-SE; Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:complement(96079..96081),aa:Ala,seq:tgc)
SIO_010081: TRNAA-UGC
subclass of: SO_0000673
so part of: TRNAA-UGC
location: complement(96042..96113)
location: region:96042-96113:-1
so has part: feature:96042-96113:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:96042-96113:-1:exon

TRNAP-CGG
type: Gene
subclass of: SO_0000704
RO_0002162: 59894
gene: TRNAP-CGG
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: complement(96349..96420)
location: region:96349-96420:-1
so has part: feature:96349-96420:-1:exon
subclass of: SO_0000663

107603765
type: Gene
SIO_000068: ncbigene

position:96349:-1
position: 96349
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:96420:-1
position: 96420
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:96349-96420:-1:exon

TRNAP-CGG
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 59894
gene: TRNAP-CGG
product: tRNA-Pro
inference: COORDINATES: profile:tRNAscan-SE:1.23
note: transfer RNA proline (anticodon CGG); tRNA features were annotated by tRNAscan-SE; Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:complement(96386..96388),aa:Pro,seq:cgg)
SIO_010081: TRNAP-CGG
subclass of: SO_0000673
so part of: TRNAP-CGG
location: complement(96349..96420)
location: region:96349-96420:-1
so has part: feature:96349-96420:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:96349-96420:-1:exon

TRNAA-CGC
type: Gene
subclass of: SO_0000704
RO_0002162: 59894
gene: TRNAA-CGC
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: 97533..97604
location: region:97533-97604:1
so has part: feature:97533-97604:1:exon
subclass of: SO_0000663

107603771
type: Gene
SIO_000068: ncbigene

position:97533:1
position: 97533
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:97604:1
position: 97604
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:97533-97604:1:exon

TRNAA-CGC
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 59894
gene: TRNAA-CGC
product: tRNA-Ala
inference: COORDINATES: profile:tRNAscan-SE:1.23
note: transfer RNA alanine (anticodon CGC); tRNA features were annotated by tRNAscan-SE; Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:97565..97567,aa:Ala,seq:cgc)
SIO_010081: TRNAA-CGC
subclass of: SO_0000673
so part of: TRNAA-CGC
location: 97533..97604
location: region:97533-97604:1
so has part: feature:97533-97604:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:97533-97604:1:exon

TRNAS-UGA
type: Gene
subclass of: SO_0000704
RO_0002162: 59894
gene: TRNAS-UGA
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: complement(98133..98214)
location: region:98133-98214:-1
so has part: feature:98133-98214:-1:exon
subclass of: SO_0000663

107603766
type: Gene
SIO_000068: ncbigene

position:98133:-1
position: 98133
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:98214:-1
position: 98214
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:98133-98214:-1:exon

TRNAS-UGA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 59894
gene: TRNAS-UGA
product: tRNA-Ser
inference: COORDINATES: profile:tRNAscan-SE:1.23
note: transfer RNA serine (anticodon UGA); tRNA features were annotated by tRNAscan-SE; Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:complement(98179..98181),aa:Ser,seq:tga)
SIO_010081: TRNAS-UGA
subclass of: SO_0000673
so part of: TRNAS-UGA
location: complement(98133..98214)
location: region:98133-98214:-1
so has part: feature:98133-98214:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:98133-98214:-1:exon

TRNAS-GCU
type: Gene
subclass of: SO_0000704
RO_0002162: 59894
gene: TRNAS-GCU
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: 103037..103118
location: region:103037-103118:1
so has part: feature:103037-103118:1:exon
subclass of: SO_0000663

107603772
type: Gene
SIO_000068: ncbigene

position:103037:1
position: 103037
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:103118:1
position: 103118
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:103037-103118:1:exon

TRNAS-GCU
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 59894
gene: TRNAS-GCU
product: tRNA-Ser
inference: COORDINATES: profile:tRNAscan-SE:1.23
note: transfer RNA serine (anticodon GCU); tRNA features were annotated by tRNAscan-SE; Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:103070..103072,aa:Ser,seq:gct)
SIO_010081: TRNAS-GCU
subclass of: SO_0000673
so part of: TRNAS-GCU
location: 103037..103118
location: region:103037-103118:1
so has part: feature:103037-103118:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:103037-103118:1:exon

LOC101805866
type: Gene
subclass of: SO_0000704
RO_0002162: 59894
gene: LOC101805866
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 107484..108208
location: region:107484-108208:1
so has part: feature:107484-108208:1:exon
subclass of: SO_0000010

101805866
type: Gene
SIO_000068: ncbigene

position:107484:1
position: 107484
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:108208:1
position: 108208
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:107484-108208:1:exon

LOC101805866
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59894
gene: LOC101805866
product: beta-keratin-related protein-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 84% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_005048942.2
SIO_010081: LOC101805866
subclass of: SO_0000673
so part of: LOC101805866
location: 107484..108208
location: region:107484-108208:1
so has part: feature:107484-108208:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:107484-108208:1:exon

LOC101805866
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59894
gene: LOC101805866
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: beta-keratin-related protein-like
translation: MSCYDLCLPSSCGPRPLATSCNQPCFRRCGDSTAFIQPPTVVVTLPGPILSSFPQSTAVGSTASAAVGSYLRCCGIPVGSRGLGKVGLLCLGTGL
SIO_010081: LOC101805866
subclass of: SO_0000673
so part of: LOC101805866
location: 107815..108102
location: region:107815-108102:1
so has part: feature:107815-108102:1:exon

XP_005048999.1
type: Protein
SIO_000068: ncbiprotein

position:107815:1
position: 107815
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:108102:1
position: 108102
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:107815-108102:1:exon

TRNAA-UGC
type: Gene
subclass of: SO_0000704
RO_0002162: 59894
gene: TRNAA-UGC
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: 113030..113101
location: region:113030-113101:1
so has part: feature:113030-113101:1:exon
subclass of: SO_0000663

107603773
type: Gene
SIO_000068: ncbigene

position:113030:1
position: 113030
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:113101:1
position: 113101
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:113030-113101:1:exon

TRNAA-UGC
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 59894
gene: TRNAA-UGC
product: tRNA-Ala
inference: COORDINATES: profile:tRNAscan-SE:1.23
note: transfer RNA alanine (anticodon UGC); tRNA features were annotated by tRNAscan-SE; Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:113062..113064,aa:Ala,seq:tgc)
SIO_010081: TRNAA-UGC
subclass of: SO_0000673
so part of: TRNAA-UGC
location: 113030..113101
location: region:113030-113101:1
so has part: feature:113030-113101:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:113030-113101:1:exon

TRNAA-CGC
type: Gene
subclass of: SO_0000704
RO_0002162: 59894
gene: TRNAA-CGC
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: 113660..113731
location: region:113660-113731:1
so has part: feature:113660-113731:1:exon
subclass of: SO_0000663

107603760
type: Gene
SIO_000068: ncbigene

position:113660:1
position: 113660
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:113731:1
position: 113731
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:113660-113731:1:exon

TRNAA-CGC
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 59894
gene: TRNAA-CGC
product: tRNA-Ala
inference: COORDINATES: profile:tRNAscan-SE:1.23
note: transfer RNA alanine (anticodon CGC); tRNA features were annotated by tRNAscan-SE; Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:113692..113694,aa:Ala,seq:cgc)
SIO_010081: TRNAA-CGC
subclass of: SO_0000673
so part of: TRNAA-CGC
location: 113660..113731
location: region:113660-113731:1
so has part: feature:113660-113731:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:113660-113731:1:exon

TRNAA-UGC
type: Gene
subclass of: SO_0000704
RO_0002162: 59894
gene: TRNAA-UGC
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: complement(116191..116262)
location: region:116191-116262:-1
so has part: feature:116191-116262:-1:exon
subclass of: SO_0000663

107603767
type: Gene
SIO_000068: ncbigene

position:116191:-1
position: 116191
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:116262:-1
position: 116262
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:116191-116262:-1:exon

TRNAA-UGC
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 59894
gene: TRNAA-UGC
product: tRNA-Ala
inference: COORDINATES: profile:tRNAscan-SE:1.23
note: transfer RNA alanine (anticodon UGC); tRNA features were annotated by tRNAscan-SE; Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:complement(116228..116230),aa:Ala,seq:tgc)
SIO_010081: TRNAA-UGC
subclass of: SO_0000673
so part of: TRNAA-UGC
location: complement(116191..116262)
location: region:116191-116262:-1
so has part: feature:116191-116262:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:116191-116262:-1:exon

TRNAP-AGG
type: Gene
subclass of: SO_0000704
RO_0002162: 59894
gene: TRNAP-AGG
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: complement(116598..116669)
location: region:116598-116669:-1
so has part: feature:116598-116669:-1:exon
subclass of: SO_0000663

107603768
type: Gene
SIO_000068: ncbigene

position:116598:-1
position: 116598
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:116669:-1
position: 116669
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:116598-116669:-1:exon

TRNAP-AGG
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 59894
gene: TRNAP-AGG
product: tRNA-Pro
inference: COORDINATES: profile:tRNAscan-SE:1.23
note: transfer RNA proline (anticodon AGG); tRNA features were annotated by tRNAscan-SE; Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:complement(116635..116637),aa:Pro,seq:agg)
SIO_010081: TRNAP-AGG
subclass of: SO_0000673
so part of: TRNAP-AGG
location: complement(116598..116669)
location: region:116598-116669:-1
so has part: feature:116598-116669:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:116598-116669:-1:exon

TRNAS-CGA
type: Gene
subclass of: SO_0000704
RO_0002162: 59894
gene: TRNAS-CGA
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: 116798..116879
location: region:116798-116879:1
so has part: feature:116798-116879:1:exon
subclass of: SO_0000663

107603761
type: Gene
SIO_000068: ncbigene

position:116798:1
position: 116798
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:116879:1
position: 116879
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:116798-116879:1:exon

TRNAS-CGA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 59894
gene: TRNAS-CGA
product: tRNA-Ser
inference: COORDINATES: profile:tRNAscan-SE:1.23
note: transfer RNA serine (anticodon CGA); tRNA features were annotated by tRNAscan-SE; Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:116831..116833,aa:Ser,seq:cga)
SIO_010081: TRNAS-CGA
subclass of: SO_0000673
so part of: TRNAS-CGA
location: 116798..116879
location: region:116798-116879:1
so has part: feature:116798-116879:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:116798-116879:1:exon

FTCD
type: Gene
subclass of: SO_0000704
RO_0002162: 59894
gene: FTCD
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 117166..123097
location: region:117166-123097:1
so has part: feature:117166-123097:1:exon
subclass of: SO_0000010

101820680
type: Gene
SIO_000068: ncbigene

position:117166:1
position: 117166
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:123097:1
position: 123097
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:117166-123097:1:exon

FTCD
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59894
gene: FTCD
product: formimidoyltransferase cyclodeaminase
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns
transcript id: XM_005048936.2
SIO_010081: FTCD
subclass of: SO_0000673
so part of: FTCD
location: join(117166..117358,118097..118280,118623..118751,118864..118952,119170..119349,119438..119575,119867..119998,120650..120711,121384..121513,121624..121785,122166..122209,122285..122423,122701..122796,122950..123097)
location: region:117166-123097:1
so has part: feature:117166-117358:1:exon
so has part: feature:118097-118280:1:exon
so has part: feature:118623-118751:1:exon
so has part: feature:118864-118952:1:exon
so has part: feature:119170-119349:1:exon
so has part: feature:119438-119575:1:exon
so has part: feature:119867-119998:1:exon
so has part: feature:120650-120711:1:exon
so has part: feature:121384-121513:1:exon
so has part: feature:121624-121785:1:exon
so has part: feature:122166-122209:1:exon
so has part: feature:122285-122423:1:exon
so has part: feature:122701-122796:1:exon
so has part: feature:122950-123097:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:117166-117358:1:exon

position:117358:1
position: 117358
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:118097-118280:1:exon

position:118097:1
position: 118097
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:118280:1
position: 118280
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:118623-118751:1:exon

position:118623:1
position: 118623
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:118751:1
position: 118751
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:118864-118952:1:exon

position:118864:1
position: 118864
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:118952:1
position: 118952
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:119170-119349:1:exon

position:119170:1
position: 119170
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:119349:1
position: 119349
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:119438-119575:1:exon

position:119438:1
position: 119438
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:119575:1
position: 119575
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:119867-119998:1:exon

position:119867:1
position: 119867
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:119998:1
position: 119998
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:120650-120711:1:exon

position:120650:1
position: 120650
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:120711:1
position: 120711
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:121384-121513:1:exon

position:121384:1
position: 121384
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:121513:1
position: 121513
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:121624-121785:1:exon

position:121624:1
position: 121624
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:121785:1
position: 121785
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:122166-122209:1:exon

position:122166:1
position: 122166
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:122209:1
position: 122209
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:122285-122423:1:exon

position:122285:1
position: 122285
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:122423:1
position: 122423
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:122701-122796:1:exon

position:122701:1
position: 122701
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:122796:1
position: 122796
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:122950-123097:1:exon

position:122950:1
position: 122950
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

FTCD
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59894
gene: FTCD
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: formimidoyltransferase-cyclodeaminase
translation: MAKLVECVPNFSEGNNKEVIDAVAQAISRTPGCVLLDVDAGASTNRTVYTFVGSPEAVVEGALSAARVAGQLIDMSQHSGEHPRMGALDVCPFVPVRNVSMEDCVTCAHIFGQRLAAELGVPVYLYGAAARDESRKALPSIRAGEYEALPEKLAKPEWAPDFGPPTFVPRWGATVTGARTFLIAYNINLLCTKELAHRIALNIREQGRGPDQPGRLKKVQGIGWYLEEENMAQVSTNLLDFETTPLHTVYEEICQDAQELNLPVVGSQLVGLVPKKAMLDAAEFYIKKEKLFILEEEQKIRLVVNRLGLDSLSPFHPKERIIEYLVEAGEVDGGLVAKPLGAFVRAVGARSAAPGGGSVSAAAGALGAALGSMVGLMSYGKRQFEDLDPIMRKLIPPFHQAMEELVAMVDADSRAFSSYMEAMKLPKNSPEERERRRVAMQQGLKRAVGVPYGLAERVSRLWPALKELARHCNLACKSDIQVAAKMLEAAVFGAYFNVTINLRDIADDEFKRVMSQKVSGLLEEAKQGSAVVLALLDKRVA
SIO_010081: FTCD
subclass of: SO_0000673
so part of: FTCD
location: join(117305..117358,118097..118280,118623..118751,118864..118952,119170..119349,119438..119575,119867..119998,120650..120711,121384..121513,121624..121785,122166..122209,122285..122423,122701..122796,122950..123036)
location: region:117305-123036:1
so has part: feature:117305-117358:1:exon
so has part: feature:118097-118280:1:exon
so has part: feature:118623-118751:1:exon
so has part: feature:118864-118952:1:exon
so has part: feature:119170-119349:1:exon
so has part: feature:119438-119575:1:exon
so has part: feature:119867-119998:1:exon
so has part: feature:120650-120711:1:exon
so has part: feature:121384-121513:1:exon
so has part: feature:121624-121785:1:exon
so has part: feature:122166-122209:1:exon
so has part: feature:122285-122423:1:exon
so has part: feature:122701-122796:1:exon
so has part: feature:122950-123036:1:exon

XP_005048993.1
type: Protein
SIO_000068: ncbiprotein

position:117305:1
position: 117305
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:123036:1
position: 123036
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:117305-117358:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:118097-118280:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:118623-118751:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:118864-118952:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:119170-119349:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:119438-119575:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:119867-119998:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:120650-120711:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:121384-121513:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:121624-121785:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:122166-122209:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:122285-122423:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:122701-122796:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:122950-123036:1:exon

LOC101820351
type: Gene
subclass of: SO_0000704
RO_0002162: 59894
gene: LOC101820351
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 124029..126956
location: region:124029-126956:1
so has part: feature:124029-126956:1:exon
subclass of: SO_0000010

101820351
type: Gene
SIO_000068: ncbigene

position:124029:1
position: 124029
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:126956:1
position: 126956
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:124029-126956:1:exon

LOC101820351
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 59894
gene: LOC101820351
product: cuticle collagen 2C-like, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XR_001611541.1
SIO_010081: LOC101820351
so part of: LOC101820351
location: join(124029..124358,124847..124882,125341..125429,126241..126956)
location: region:124029-126956:1
so has part: feature:124029-124358:1:exon
so has part: feature:124847-124882:1:exon
so has part: feature:125341-125429:1:exon
so has part: feature:126241-126956:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:124029-124358:1:exon

position:124358:1
position: 124358
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:124847-124882:1:exon

position:124847:1
position: 124847
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:124882:1
position: 124882
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:125341-125429:1:exon

position:125341:1
position: 125341
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:125429:1
position: 125429
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:126241-126956:1:exon

position:126241:1
position: 126241
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC101820351
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59894
gene: LOC101820351
product: cuticle collagen 2C-like, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
transcript id: XM_005048933.2
SIO_010081: LOC101820351
subclass of: SO_0000673
so part of: LOC101820351
location: join(124033..124358,124847..124882,125128..125429,126241..126953)
location: region:124033-126953:1
so has part: feature:124033-124358:1:exon
so has part: feature:124847-124882:1:exon
so has part: feature:125128-125429:1:exon
so has part: feature:126241-126953:1:exon

position:124033:1
position: 124033
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:126953:1
position: 126953
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:124033-124358:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:124847-124882:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:125128-125429:1:exon

position:125128:1
position: 125128
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:126241-126953:1:exon

LOC101820351
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59894
gene: LOC101820351
product: cuticle collagen 2C-like, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_016299746.1
SIO_010081: LOC101820351
subclass of: SO_0000673
so part of: LOC101820351
location: join(124373..124514,124847..124882,125128..125429,126241..126956)
location: region:124373-126956:1
so has part: feature:124373-124514:1:exon
so has part: feature:124847-124882:1:exon
so has part: feature:125128-125429:1:exon
so has part: feature:126241-126956:1:exon

position:124373:1
position: 124373
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:124373-124514:1:exon

position:124514:1
position: 124514
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:124847-124882:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:125128-125429:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:126241-126956:1:exon

LOC101820351
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59894
gene: LOC101820351
product: cuticle collagen 2C-like, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XM_005048934.2
SIO_010081: LOC101820351
subclass of: SO_0000673
so part of: LOC101820351
location: join(124377..124492,124847..124882,125128..125429,126241..126954)
location: region:124377-126954:1
so has part: feature:124377-124492:1:exon
so has part: feature:124847-124882:1:exon
so has part: feature:125128-125429:1:exon
so has part: feature:126241-126954:1:exon

position:124377:1
position: 124377
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:126954:1
position: 126954
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:124377-124492:1:exon

position:124492:1
position: 124492
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:124847-124882:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:125128-125429:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:126241-126954:1:exon

LOC101820351
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59894
gene: LOC101820351
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: cuticle collagen 2C-like isoform X1
translation: MAGTAPRHVSPVPCGPRGPEVGTRLGQSWRPLRMCDPNQGPPRPHLAVCPPAPPGYAGPGTGPYPGGIAVCPAAPPGHPGPGTGPYPGGVAICPPCPAPPGQHPYGHPPSGHHPQGHQEHHKKHHKKHHKKKHCQHHEGKPSGGSSSSSSSSDSD
SIO_010081: LOC101820351
subclass of: SO_0000673
so part of: LOC101820351
location: join(124433..124514,124847..124882,125128..125429,126241..126288)
location: region:124433-126288:1
so has part: feature:124433-124514:1:exon
so has part: feature:124847-124882:1:exon
so has part: feature:125128-125429:1:exon
so has part: feature:126241-126288:1:exon

XP_016155232.1
type: Protein
SIO_000068: ncbiprotein

position:124433:1
position: 124433
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:126288:1
position: 126288
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:124433-124514:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:124847-124882:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:125128-125429:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:126241-126288:1:exon

LOC101820351
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59894
gene: LOC101820351
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: proline-rich protein 13-like isoform X2
translation: MCDPNQGPPRPHLAVCPPAPPGYAGPGTGPYPGGIAVCPAAPPGHPGPGTGPYPGGVAICPPCPAPPGQHPYGHPPSGHHPQGHQEHHKKHHKKHHKKKHCQHHEGKPSGGSSSSSSSSDSD
SIO_010081: LOC101820351
subclass of: SO_0000673
so part of: LOC101820351
location: join(124864..124882,125128..125429,126241..126288)
location: region:124864-126288:1
so has part: feature:124864-124882:1:exon
so has part: feature:125128-125429:1:exon
so has part: feature:126241-126288:1:exon

XP_005048990.1
type: Protein
SIO_000068: ncbiprotein

position:124864:1
position: 124864
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:124864-124882:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:125128-125429:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:126241-126288:1:exon

LOC101820351
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59894
gene: LOC101820351
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: proline-rich protein 13-like isoform X2
translation: MCDPNQGPPRPHLAVCPPAPPGYAGPGTGPYPGGIAVCPAAPPGHPGPGTGPYPGGVAICPPCPAPPGQHPYGHPPSGHHPQGHQEHHKKHHKKHHKKKHCQHHEGKPSGGSSSSSSSSDSD
SIO_010081: LOC101820351
subclass of: SO_0000673
so part of: LOC101820351
location: join(124864..124882,125128..125429,126241..126288)
location: region:124864-126288:1
so has part: feature:124864-124882:1:exon
so has part: feature:125128-125429:1:exon
so has part: feature:126241-126288:1:exon

XP_005048991.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:124864-124882:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:125128-125429:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:126241-126288:1:exon

COL6A2
type: Gene
subclass of: SO_0000704
RO_0002162: 59894
gene: COL6A2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(126975..152858)
location: region:126975-152858:-1
so has part: feature:126975-152858:-1:exon
subclass of: SO_0000010

101820018
type: Gene
SIO_000068: ncbigene

position:126975:-1
position: 126975
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:152858:-1
position: 152858
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:126975-152858:-1:exon

COL6A2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59894
gene: COL6A2
product: collagen type VI alpha 2, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 18 samples with support for all annotated introns
transcript id: XM_005048931.2
SIO_010081: COL6A2
subclass of: SO_0000673
so part of: COL6A2
location: complement(join(126975..128351,135357..135395,135674..136126,136294..136446,136565..136610,136823..136858,137035..137097,137331..137393,137839..137874,138222..138272,138699..138761,139209..139271,139396..139458,139837..139899,140645..140734,141199..141261,141535..141597,142008..142061,144325..144369,144560..144586,145005..145031,145271..145315,145397..145450,145863..145928,146565..146585,147057..147655,148343..148480,152541..152849))
location: region:126975-152849:-1
so has part: feature:152541-152849:-1:exon
so has part: feature:148343-148480:-1:exon
so has part: feature:147057-147655:-1:exon
so has part: feature:146565-146585:-1:exon
so has part: feature:145863-145928:-1:exon
so has part: feature:145397-145450:-1:exon
so has part: feature:145271-145315:-1:exon
so has part: feature:145005-145031:-1:exon
so has part: feature:144560-144586:-1:exon
so has part: feature:144325-144369:-1:exon
so has part: feature:142008-142061:-1:exon
so has part: feature:141535-141597:-1:exon
so has part: feature:141199-141261:-1:exon
so has part: feature:140645-140734:-1:exon
so has part: feature:139837-139899:-1:exon
so has part: feature:139396-139458:-1:exon
so has part: feature:139209-139271:-1:exon
so has part: feature:138699-138761:-1:exon
so has part: feature:138222-138272:-1:exon
so has part: feature:137839-137874:-1:exon
so has part: feature:137331-137393:-1:exon
so has part: feature:137035-137097:-1:exon
so has part: feature:136823-136858:-1:exon
so has part: feature:136565-136610:-1:exon
so has part: feature:136294-136446:-1:exon
so has part: feature:135674-136126:-1:exon
so has part: feature:135357-135395:-1:exon
so has part: feature:126975-128351:-1:exon

position:152849:-1
position: 152849
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:152541-152849:-1:exon

position:152541:-1
position: 152541
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:148343-148480:-1:exon

position:148343:-1
position: 148343
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:148480:-1
position: 148480
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:147057-147655:-1:exon

position:147057:-1
position: 147057
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:147655:-1
position: 147655
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:146565-146585:-1:exon

position:146565:-1
position: 146565
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:146585:-1
position: 146585
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:145863-145928:-1:exon

position:145863:-1
position: 145863
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:145928:-1
position: 145928
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:145397-145450:-1:exon

position:145397:-1
position: 145397
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:145450:-1
position: 145450
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:145271-145315:-1:exon

position:145271:-1
position: 145271
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:145315:-1
position: 145315
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:145005-145031:-1:exon

position:145005:-1
position: 145005
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:145031:-1
position: 145031
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:144560-144586:-1:exon

position:144560:-1
position: 144560
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:144586:-1
position: 144586
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:144325-144369:-1:exon

position:144325:-1
position: 144325
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:144369:-1
position: 144369
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:142008-142061:-1:exon

position:142008:-1
position: 142008
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:142061:-1
position: 142061
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:141535-141597:-1:exon

position:141535:-1
position: 141535
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:141597:-1
position: 141597
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:141199-141261:-1:exon

position:141199:-1
position: 141199
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:141261:-1
position: 141261
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:140645-140734:-1:exon

position:140645:-1
position: 140645
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:140734:-1
position: 140734
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:139837-139899:-1:exon

position:139837:-1
position: 139837
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:139899:-1
position: 139899
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:139396-139458:-1:exon

position:139396:-1
position: 139396
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:139458:-1
position: 139458
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:139209-139271:-1:exon

position:139209:-1
position: 139209
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:139271:-1
position: 139271
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:138699-138761:-1:exon

position:138699:-1
position: 138699
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:138761:-1
position: 138761
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:138222-138272:-1:exon

position:138222:-1
position: 138222
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:138272:-1
position: 138272
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:137839-137874:-1:exon

position:137839:-1
position: 137839
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:137874:-1
position: 137874
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:137331-137393:-1:exon

position:137331:-1
position: 137331
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:137393:-1
position: 137393
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 22
SIO_000628: feature:137035-137097:-1:exon

position:137035:-1
position: 137035
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:137097:-1
position: 137097
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 23
SIO_000628: feature:136823-136858:-1:exon

position:136823:-1
position: 136823
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:136858:-1
position: 136858
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 24
SIO_000628: feature:136565-136610:-1:exon

position:136565:-1
position: 136565
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:136610:-1
position: 136610
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 25
SIO_000628: feature:136294-136446:-1:exon

position:136294:-1
position: 136294
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:136446:-1
position: 136446
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 26
SIO_000628: feature:135674-136126:-1:exon

position:135674:-1
position: 135674
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:136126:-1
position: 136126
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 27
SIO_000628: feature:135357-135395:-1:exon

position:135357:-1
position: 135357
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:135395:-1
position: 135395
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 28
SIO_000628: feature:126975-128351:-1:exon

position:128351:-1
position: 128351
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

COL6A2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59894
gene: COL6A2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: collagen alpha-2(VI) chain isoform X1
translation: MFPQALFPTLLCVALVPLHAAQLDVDVGDVSPTSCAEKRNCPINVYFIIDTSESVALQTVPIQSLVDQIKRFIPMFIDKLESELYQNQVYITWQFGGLHYSDVVEIYSPLTSSKDIYLPRLSAIKYLGRGTFTDCAISNMTQQIQTQMANGVNFAVVITDGHVTGSPCGGMKMQAERARDMGIKLFAVAPSEKVYEQGLREIANLPHELYRNNYAITQRDTLEIDINTIDRIIQAMKHEAYGECYKMSCLEIAGPPGPKGYRGQKGAKGNMGEPGSPGLKGRQGDPGIEGPIGYPGPKGVPGLKGEKGEIGSDGRRGAPGLAGRNGTDGQKGRLGRIGPPGCKGDPGDKGPDGYPGDAGDQGERGDAGIKGDPGRPGRSGPLGPPGEKGSPGLPGNPGAQGPAGTKGRKGEVGPPGPKGEAGRRGDPGTKGSKGSPGGLGERGDPGPEGTRGLPGEVGNKGARGEQGLPGPRGPSGAVGEPGRIGSRGDPGDLGPRGDAGPPGPKGDRGRPGFSYPGPRGPQGDKGEKGQPGPKGGRGELGPKGVQGTKGEKGEPGDPGPGGEPGQRGPPGEAGPEGTPGPPGDPGLTDCDVMTYVRETCGCCDCEKRCGALDIMFVIDSSESIGYTNFTLEKNFVINVVSRLGSIAKDPKSQTGARVGVVQYSHEGTFEAIKLDDERIDSLSSFKEAVKRLEWIAGGTWTPSALQFAYNKLIKESRREKAQVFAVVITDGRYDPRDDDKNLGALCGRDVVVNTIGIGDMFDQPEQSETLVSIACNEPQRVQKMRLFSDLVAEEFIDKMEDVLCPDPQIVCPELPCQTELAVAQCTQRPVDVVFLLDGSERIGEQNFQSAHRFVEDVARQLTLARSNSDHMNARIALLQYGSEQDQNVVFPLTHNLTEISDALAQIKYLDSSSNIGSAIIHAINNIVLSPGNGQRLARRNAELSFVFITDGITGSKNLEEAINSMKKQDVMPTVVALGSDVDMDVLLKLGLGDRAAIFREKDYDRLSQPSFFDRFIRWIC
SIO_010081: COL6A2
subclass of: SO_0000673
so part of: COL6A2
location: complement(join(127744..128351,135357..135395,135674..136126,136294..136446,136565..136610,136823..136858,137035..137097,137331..137393,137839..137874,138222..138272,138699..138761,139209..139271,139396..139458,139837..139899,140645..140734,141199..141261,141535..141597,142008..142061,144325..144369,144560..144586,145005..145031,145271..145315,145397..145450,145863..145928,146565..146585,147057..147655,148343..148451))
location: region:127744-148451:-1
so has part: feature:148343-148451:-1:exon
so has part: feature:147057-147655:-1:exon
so has part: feature:146565-146585:-1:exon
so has part: feature:145863-145928:-1:exon
so has part: feature:145397-145450:-1:exon
so has part: feature:145271-145315:-1:exon
so has part: feature:145005-145031:-1:exon
so has part: feature:144560-144586:-1:exon
so has part: feature:144325-144369:-1:exon
so has part: feature:142008-142061:-1:exon
so has part: feature:141535-141597:-1:exon
so has part: feature:141199-141261:-1:exon
so has part: feature:140645-140734:-1:exon
so has part: feature:139837-139899:-1:exon
so has part: feature:139396-139458:-1:exon
so has part: feature:139209-139271:-1:exon
so has part: feature:138699-138761:-1:exon
so has part: feature:138222-138272:-1:exon
so has part: feature:137839-137874:-1:exon
so has part: feature:137331-137393:-1:exon
so has part: feature:137035-137097:-1:exon
so has part: feature:136823-136858:-1:exon
so has part: feature:136565-136610:-1:exon
so has part: feature:136294-136446:-1:exon
so has part: feature:135674-136126:-1:exon
so has part: feature:135357-135395:-1:exon
so has part: feature:127744-128351:-1:exon

XP_005048988.1
type: Protein
SIO_000068: ncbiprotein

position:127744:-1
position: 127744
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:148451:-1
position: 148451
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:148343-148451:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:147057-147655:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:146565-146585:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:145863-145928:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:145397-145450:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:145271-145315:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:145005-145031:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:144560-144586:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:144325-144369:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:142008-142061:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:141535-141597:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:141199-141261:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:140645-140734:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:139837-139899:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:139396-139458:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:139209-139271:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:138699-138761:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:138222-138272:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:137839-137874:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:137331-137393:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:137035-137097:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:136823-136858:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:136565-136610:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:136294-136446:-1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:135674-136126:-1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:135357-135395:-1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:127744-128351:-1:exon

COL6A2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59894
gene: COL6A2
product: collagen type VI alpha 2, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
transcript id: XM_005048932.2
SIO_010081: COL6A2
subclass of: SO_0000673
so part of: COL6A2
location: complement(join(128358..132697,135357..135395,135674..136126,136294..136446,136565..136610,136823..136858,137035..137097,137331..137393,137839..137874,138222..138272,138699..138761,139209..139271,139396..139458,139837..139899,140645..140734,141199..141261,141535..141597,142008..142061,144325..144369,144560..144586,145005..145031,145271..145315,145397..145450,145863..145928,146565..146585,147057..147655,148343..148480,152541..152858))
location: region:128358-152858:-1
so has part: feature:152541-152858:-1:exon
so has part: feature:148343-148480:-1:exon
so has part: feature:147057-147655:-1:exon
so has part: feature:146565-146585:-1:exon
so has part: feature:145863-145928:-1:exon
so has part: feature:145397-145450:-1:exon
so has part: feature:145271-145315:-1:exon
so has part: feature:145005-145031:-1:exon
so has part: feature:144560-144586:-1:exon
so has part: feature:144325-144369:-1:exon
so has part: feature:142008-142061:-1:exon
so has part: feature:141535-141597:-1:exon
so has part: feature:141199-141261:-1:exon
so has part: feature:140645-140734:-1:exon
so has part: feature:139837-139899:-1:exon
so has part: feature:139396-139458:-1:exon
so has part: feature:139209-139271:-1:exon
so has part: feature:138699-138761:-1:exon
so has part: feature:138222-138272:-1:exon
so has part: feature:137839-137874:-1:exon
so has part: feature:137331-137393:-1:exon
so has part: feature:137035-137097:-1:exon
so has part: feature:136823-136858:-1:exon
so has part: feature:136565-136610:-1:exon
so has part: feature:136294-136446:-1:exon
so has part: feature:135674-136126:-1:exon
so has part: feature:135357-135395:-1:exon
so has part: feature:128358-132697:-1:exon

position:128358:-1
position: 128358
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:152541-152858:-1:exon

urn:…
SIO_000300: 2
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urn:…
SIO_000300: 12
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urn:…
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urn:…
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urn:…
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urn:…
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urn:…
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urn:…
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SIO_000628: feature:138699-138761:-1:exon

urn:…
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SIO_000628: feature:138222-138272:-1:exon

urn:…
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SIO_000628: feature:137839-137874:-1:exon

urn:…
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SIO_000628: feature:137331-137393:-1:exon

urn:…
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SIO_000628: feature:137035-137097:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:136823-136858:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:136565-136610:-1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:136294-136446:-1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:135674-136126:-1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:135357-135395:-1:exon

urn:…
SIO_000300: 28
SIO_000628: feature:128358-132697:-1:exon

position:132697:-1
position: 132697
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

COL6A2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59894
gene: COL6A2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: collagen alpha-2(VI) chain isoform X2
translation: MFPQALFPTLLCVALVPLHAAQLDVDVGDVSPTSCAEKRNCPINVYFIIDTSESVALQTVPIQSLVDQIKRFIPMFIDKLESELYQNQVYITWQFGGLHYSDVVEIYSPLTSSKDIYLPRLSAIKYLGRGTFTDCAISNMTQQIQTQMANGVNFAVVITDGHVTGSPCGGMKMQAERARDMGIKLFAVAPSEKVYEQGLREIANLPHELYRNNYAITQRDTLEIDINTIDRIIQAMKHEAYGECYKMSCLEIAGPPGPKGYRGQKGAKGNMGEPGSPGLKGRQGDPGIEGPIGYPGPKGVPGLKGEKGEIGSDGRRGAPGLAGRNGTDGQKGRLGRIGPPGCKGDPGDKGPDGYPGDAGDQGERGDAGIKGDPGRPGRSGPLGPPGEKGSPGLPGNPGAQGPAGTKGRKGEVGPPGPKGEAGRRGDPGTKGSKGSPGGLGERGDPGPEGTRGLPGEVGNKGARGEQGLPGPRGPSGAVGEPGRIGSRGDPGDLGPRGDAGPPGPKGDRGRPGFSYPGPRGPQGDKGEKGQPGPKGGRGELGPKGVQGTKGEKGEPGDPGPGGEPGQRGPPGEAGPEGTPGPPGDPGLTDCDVMTYVRETCGCCDCEKRCGALDIMFVIDSSESIGYTNFTLEKNFVINVVSRLGSIAKDPKSQTGARVGVVQYSHEGTFEAIKLDDERIDSLSSFKEAVKRLEWIAGGTWTPSALQFAYNKLIKESRREKAQVFAVVITDGRYDPRDDDKNLGALCGRDVVVNTIGIGDMFDQPEQSETLVSIACNEPQRVQKMRLFSDLVAEEFIDKMEDVLCPDPQIVCPELPCQTDDRNPGSVNPVIFRPMEEGVNIDFPSTIHSIAQFLNSTRESQDPSMYNQLVATLAFTAEKAKFTTGNERQEWMDLFIDTFKMVHSEIVGDPETVLGLC
SIO_010081: COL6A2
subclass of: SO_0000673
so part of: COL6A2
location: complement(join(132402..132697,135357..135395,135674..136126,136294..136446,136565..136610,136823..136858,137035..137097,137331..137393,137839..137874,138222..138272,138699..138761,139209..139271,139396..139458,139837..139899,140645..140734,141199..141261,141535..141597,142008..142061,144325..144369,144560..144586,145005..145031,145271..145315,145397..145450,145863..145928,146565..146585,147057..147655,148343..148451))
location: region:132402-148451:-1
so has part: feature:148343-148451:-1:exon
so has part: feature:147057-147655:-1:exon
so has part: feature:146565-146585:-1:exon
so has part: feature:145863-145928:-1:exon
so has part: feature:145397-145450:-1:exon
so has part: feature:145271-145315:-1:exon
so has part: feature:145005-145031:-1:exon
so has part: feature:144560-144586:-1:exon
so has part: feature:144325-144369:-1:exon
so has part: feature:142008-142061:-1:exon
so has part: feature:141535-141597:-1:exon
so has part: feature:141199-141261:-1:exon
so has part: feature:140645-140734:-1:exon
so has part: feature:139837-139899:-1:exon
so has part: feature:139396-139458:-1:exon
so has part: feature:139209-139271:-1:exon
so has part: feature:138699-138761:-1:exon
so has part: feature:138222-138272:-1:exon
so has part: feature:137839-137874:-1:exon
so has part: feature:137331-137393:-1:exon
so has part: feature:137035-137097:-1:exon
so has part: feature:136823-136858:-1:exon
so has part: feature:136565-136610:-1:exon
so has part: feature:136294-136446:-1:exon
so has part: feature:135674-136126:-1:exon
so has part: feature:135357-135395:-1:exon
so has part: feature:132402-132697:-1:exon

XP_005048989.1
type: Protein
SIO_000068: ncbiprotein

position:132402:-1
position: 132402
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:148343-148451:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:147057-147655:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:146565-146585:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:145863-145928:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:145397-145450:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:145271-145315:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:145005-145031:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:144560-144586:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:144325-144369:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:142008-142061:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:141535-141597:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:141199-141261:-1:exon

urn:…
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urn:…
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SIO_000628: feature:139837-139899:-1:exon

urn:…
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SIO_000628: feature:139396-139458:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:139209-139271:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:138699-138761:-1:exon

urn:…
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SIO_000628: feature:138222-138272:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:137839-137874:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:137331-137393:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:137035-137097:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:136823-136858:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:136565-136610:-1:exon

urn:…
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SIO_000628: feature:136294-136446:-1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:135674-136126:-1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:135357-135395:-1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:132402-132697:-1:exon

COL6A1
type: Gene
subclass of: SO_0000704
RO_0002162: 59894
gene: COL6A1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(172868..199748)
location: region:172868-199748:-1
so has part: feature:172868-199748:-1:exon
subclass of: SO_0000010

101819820
type: Gene
SIO_000068: ncbigene

position:172868:-1
position: 172868
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:199748:-1
position: 199748
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:172868-199748:-1:exon

COL6A1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59894
gene: COL6A1
product: collagen type VI alpha 1, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XM_016299846.1
SIO_010081: COL6A1
subclass of: SO_0000673
so part of: COL6A1
location: complement(join(172868..174929,175687..175716,176080..176254,176454..176637,176879..176988,178064..178197,179032..179040,179786..179822,179914..179949,180311..180376,180822..180884,181437..181472,181557..181607,181720..181782,182564..182626,185910..185972,187874..187936,188074..188109,188191..188244,188406..188468,188962..189024,189546..189599,189836..189880,189976..190002,190282..190308,190413..190457,191206..191259,191544..191588,191686..191706,191890..191910,192002..192166,192302..192461,192732..192932,194995..195124,195833..196077,199625..199748))
location: region:172868-199748:-1
so has part: feature:199625-199748:-1:exon
so has part: feature:195833-196077:-1:exon
so has part: feature:194995-195124:-1:exon
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so has part: feature:187874-187936:-1:exon
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so has part: feature:176080-176254:-1:exon
so has part: feature:175687-175716:-1:exon
so has part: feature:172868-174929:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:199625-199748:-1:exon

position:199625:-1
position: 199625
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:195833-196077:-1:exon

position:195833:-1
position: 195833
reference: sequence
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position:196077:-1
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reference: sequence
type: ReverseStrandPosition
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urn:…
SIO_000300: 3
SIO_000628: feature:194995-195124:-1:exon

position:194995:-1
position: 194995
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:195124:-1
position: 195124
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:192732-192932:-1:exon

position:192732:-1
position: 192732
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:192932:-1
position: 192932
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:192302-192461:-1:exon

position:192302:-1
position: 192302
reference: sequence
type: ReverseStrandPosition
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position:192461:-1
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reference: sequence
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urn:…
SIO_000300: 6
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position:192002:-1
position: 192002
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:192166:-1
position: 192166
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:191890-191910:-1:exon

position:191890:-1
position: 191890
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:191910:-1
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reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:191686-191706:-1:exon

position:191686:-1
position: 191686
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:191706:-1
position: 191706
reference: sequence
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type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:191544-191588:-1:exon

position:191544:-1
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reference: sequence
type: ReverseStrandPosition
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position:191588:-1
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reference: sequence
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urn:…
SIO_000300: 10
SIO_000628: feature:191206-191259:-1:exon

position:191206:-1
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reference: sequence
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position:191259:-1
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reference: sequence
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urn:…
SIO_000300: 11
SIO_000628: feature:190413-190457:-1:exon

position:190413:-1
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reference: sequence
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position:190457:-1
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reference: sequence
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urn:…
SIO_000300: 12
SIO_000628: feature:190282-190308:-1:exon

position:190282:-1
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position:190308:-1
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reference: sequence
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urn:…
SIO_000300: 13
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reference: sequence
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position:190002:-1
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reference: sequence
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urn:…
SIO_000300: 14
SIO_000628: feature:189836-189880:-1:exon

position:189836:-1
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reference: sequence
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position:189880:-1
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reference: sequence
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urn:…
SIO_000300: 15
SIO_000628: feature:189546-189599:-1:exon

position:189546:-1
position: 189546
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:189599:-1
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reference: sequence
type: ReverseStrandPosition
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urn:…
SIO_000300: 16
SIO_000628: feature:188962-189024:-1:exon

position:188962:-1
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reference: sequence
type: ReverseStrandPosition
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position:189024:-1
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reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:188406-188468:-1:exon

position:188406:-1
position: 188406
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:188468:-1
position: 188468
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:188191-188244:-1:exon

position:188191:-1
position: 188191
reference: sequence
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urn:…
SIO_000300: 24
SIO_000628: feature:181557-181607:-1:exon

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SIO_000300: 25
SIO_000628: feature:181437-181472:-1:exon

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COL6A1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59894
gene: COL6A1
product: collagen type VI alpha 1, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XM_016299847.1
SIO_010081: COL6A1
subclass of: SO_0000673
so part of: COL6A1
location: complement(join(172868..174929,175687..175716,176080..176254,176454..176637,176879..176988,178064..178197,179032..179040,179786..179822,179914..179949,180311..180376,180822..180884,181437..181472,181557..181607,181720..181782,182564..182626,185910..185972,187874..187936,188074..188109,188191..188244,188406..188468,188962..189024,189546..189599,189836..189880,189976..190002,190282..190308,190413..190457,191206..191259,191544..191588,191686..191706,191890..191910,192002..192092,192135..192166,192302..192461,192732..192932,194995..195124,195833..196077,196199..196404))
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position:196404:-1
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SIO_000300: 1
SIO_000628: feature:196199-196404:-1:exon

position:196199:-1
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reference: sequence
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urn:…
SIO_000300: 2
SIO_000628: feature:195833-196077:-1:exon

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SIO_000628: feature:192002-192092:-1:exon

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SIO_000628: feature:176454-176637:-1:exon

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SIO_000628: feature:176080-176254:-1:exon

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SIO_000300: 36
SIO_000628: feature:175687-175716:-1:exon

urn:…
SIO_000300: 37
SIO_000628: feature:172868-174929:-1:exon

COL6A1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59894
gene: COL6A1
product: collagen type VI alpha 1, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XM_005048930.2
SIO_010081: COL6A1
subclass of: SO_0000673
so part of: COL6A1
location: complement(join(172868..174929,175687..175716,176080..176254,176454..176637,176879..176988,178064..178197,179032..179040,179786..179822,179914..179949,180311..180376,180822..180884,181437..181472,181557..181607,181720..181782,182564..182626,185910..185972,187874..187936,188074..188109,188191..188244,188406..188468,188962..189024,189546..189599,189836..189880,189976..190002,190282..190308,190413..190457,191206..191259,191544..191588,191686..191706,191890..191910,192002..192166,192302..192461,192732..192932,194995..195124,195833..196077,196199..196404))
location: region:172868-196404:-1
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urn:…
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urn:…
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SIO_000628: feature:172868-174929:-1:exon

COL6A1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59894
gene: COL6A1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: collagen alpha-1(VI) chain isoform X2
translation: MKLRDFLLTLLLPAGFLWEGSCAQRPEIITQVSSAEDCPVDLFFVLDTSESVALRVKPFGDLVTQVKDFTNRFIDKLTRRYYRCDRNLVWNAGALHYSDEVVLIKSLTPMPSGQSELKNRVSAVNYIGKGTYTDCAIKRGIEELLIGGSHHKENKYLIVVTDGHPLEGYKEPCGGLDDAANEAKLLGIKVFSVAISPNHLDQRLNIIATDHAYRRNFTATSLKPTREMDVEETINTIIDMIKLNTEQSCCSFECQPPRGPPGPPGDPGHEGERGKPGLPGQKGEAGDPGRPGDMGPVGYQGMKGDKGSRGEKGSRGAKGAKGEKGRRGIDGIDGMKGEAGYPGLPGCKGSPGFDGAQGPPGPKGDPGAFGPKGAKGEPGNDGKPGRQGIPGNPGEKGAPGNRGEPGPAGETGDEGALGEDGPPGERGSNGERGPPGSPGERGPRGQPGEPGPSGDQGREGPLGPPGDQGEPGPPGPKGYRGDDGPPGSEGPKGLPGAPGLPGDPGLMGERGEDGPPGNGTIGFTGAPGQPGDRGNPGINGTKGYVGPKGDEGEAGDPGNDNLIPGPSGIKGAKGHRGREGPPGPPGPVGPPGPDECEILDIIMKMCSCCECTCGPVDLLFVLDSSESIGLQNFQIAKDFIIKVIDRLSKDERVKFEAGESRVGVVQYSHDNTQELVAMGDANIDNIGALKQAVKNLQWIAGGTYTGEALQFTKDNLLRRFTSDKRVAIVITDGRSDTLRDPTPLNSLCDVTPVVSLGIGDIFRNPPNPDHLNDIACLSRPTRPGLSIQRDNYAELLDDTFLQNITSYVCQEKKCPDYTCPITFTGPADITLLVDSSTSVGSKNFETTKKFVKQLAGRFLEAGKPADDSVRISVVQYSGRNQQKVEAQFQYNYTVIAKAIDSMEFMNDATDVNSALQFITELYRRSARAAAKKRVLVFSDGHSQGITARAIERAVQDAQRADIEIYVLAVGSQANEPNIRVLVTGKSTDYDVAYGERHLFRVPDYTSLLRGVFYQTVSRKIAVD
SIO_010081: COL6A1
subclass of: SO_0000673
so part of: COL6A1
location: complement(join(174319..174929,175687..175716,176080..176254,176454..176637,176879..176988,178064..178197,179032..179040,179786..179822,179914..179949,180311..180376,180822..180884,181437..181472,181557..181607,181720..181782,182564..182626,185910..185972,187874..187936,188074..188109,188191..188244,188406..188468,188962..189024,189546..189599,189836..189880,189976..190002,190282..190308,190413..190457,191206..191259,191544..191588,191686..191706,191890..191910,192002..192092,192135..192166,192302..192461,192732..192932,194995..195124,195833..195941))
location: region:174319-195941:-1
so has part: feature:195833-195941:-1:exon
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so has part: feature:190282-190308:-1:exon
so has part: feature:189976-190002:-1:exon
so has part: feature:189836-189880:-1:exon
so has part: feature:189546-189599:-1:exon
so has part: feature:188962-189024:-1:exon
so has part: feature:188406-188468:-1:exon
so has part: feature:188191-188244:-1:exon
so has part: feature:188074-188109:-1:exon
so has part: feature:187874-187936:-1:exon
so has part: feature:185910-185972:-1:exon
so has part: feature:182564-182626:-1:exon
so has part: feature:181720-181782:-1:exon
so has part: feature:181557-181607:-1:exon
so has part: feature:181437-181472:-1:exon
so has part: feature:180822-180884:-1:exon
so has part: feature:180311-180376:-1:exon
so has part: feature:179914-179949:-1:exon
so has part: feature:179786-179822:-1:exon
so has part: feature:179032-179040:-1:exon
so has part: feature:178064-178197:-1:exon
so has part: feature:176879-176988:-1:exon
so has part: feature:176454-176637:-1:exon
so has part: feature:176080-176254:-1:exon
so has part: feature:175687-175716:-1:exon
so has part: feature:174319-174929:-1:exon

XP_016155333.1
type: Protein
SIO_000068: ncbiprotein

position:174319:-1
position: 174319
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:195941:-1
position: 195941
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:195833-195941:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:194995-195124:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:192732-192932:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:192302-192461:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:192135-192166:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:192002-192092:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:191890-191910:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:191686-191706:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:191544-191588:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:191206-191259:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:190413-190457:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:190282-190308:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:189976-190002:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:189836-189880:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:189546-189599:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:188962-189024:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:188406-188468:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:188191-188244:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:188074-188109:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:187874-187936:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:185910-185972:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:182564-182626:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:181720-181782:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:181557-181607:-1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:181437-181472:-1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:180822-180884:-1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:180311-180376:-1:exon

urn:…
SIO_000300: 28
SIO_000628: feature:179914-179949:-1:exon

urn:…
SIO_000300: 29
SIO_000628: feature:179786-179822:-1:exon

urn:…
SIO_000300: 30
SIO_000628: feature:179032-179040:-1:exon

urn:…
SIO_000300: 31
SIO_000628: feature:178064-178197:-1:exon

urn:…
SIO_000300: 32
SIO_000628: feature:176879-176988:-1:exon

urn:…
SIO_000300: 33
SIO_000628: feature:176454-176637:-1:exon

urn:…
SIO_000300: 34
SIO_000628: feature:176080-176254:-1:exon

urn:…
SIO_000300: 35
SIO_000628: feature:175687-175716:-1:exon

urn:…
SIO_000300: 36
SIO_000628: feature:174319-174929:-1:exon

COL6A1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59894
gene: COL6A1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: collagen alpha-1(VI) chain isoform X1
translation: MKLRDFLLTLLLPAGFLWEGSCAQRPEIITQVSSAEDCPVDLFFVLDTSESVALRVKPFGDLVTQVKDFTNRFIDKLTRRYYRCDRNLVWNAGALHYSDEVVLIKSLTPMPSGQSELKNRVSAVNYIGKGTYTDCAIKRGIEELLIGGSHHKENKYLIVVTDGHPLEGYKEPCGGLDDAANEAKLLGIKVFSVAISPNHLDQRLNIIATDHAYRRNFRGGGGGGGAYRRNFTATSLKPTREMDVEETINTIIDMIKLNTEQSCCSFECQPPRGPPGPPGDPGHEGERGKPGLPGQKGEAGDPGRPGDMGPVGYQGMKGDKGSRGEKGSRGAKGAKGEKGRRGIDGIDGMKGEAGYPGLPGCKGSPGFDGAQGPPGPKGDPGAFGPKGAKGEPGNDGKPGRQGIPGNPGEKGAPGNRGEPGPAGETGDEGALGEDGPPGERGSNGERGPPGSPGERGPRGQPGEPGPSGDQGREGPLGPPGDQGEPGPPGPKGYRGDDGPPGSEGPKGLPGAPGLPGDPGLMGERGEDGPPGNGTIGFTGAPGQPGDRGNPGINGTKGYVGPKGDEGEAGDPGNDNLIPGPSGIKGAKGHRGREGPPGPPGPVGPPGPDECEILDIIMKMCSCCECTCGPVDLLFVLDSSESIGLQNFQIAKDFIIKVIDRLSKDERVKFEAGESRVGVVQYSHDNTQELVAMGDANIDNIGALKQAVKNLQWIAGGTYTGEALQFTKDNLLRRFTSDKRVAIVITDGRSDTLRDPTPLNSLCDVTPVVSLGIGDIFRNPPNPDHLNDIACLSRPTRPGLSIQRDNYAELLDDTFLQNITSYVCQEKKCPDYTCPITFTGPADITLLVDSSTSVGSKNFETTKKFVKQLAGRFLEAGKPADDSVRISVVQYSGRNQQKVEAQFQYNYTVIAKAIDSMEFMNDATDVNSALQFITELYRRSARAAAKKRVLVFSDGHSQGITARAIERAVQDAQRADIEIYVLAVGSQANEPNIRVLVTGKSTDYDVAYGERHLFRVPDYTSLLRGVFYQTVSRKIAVD
SIO_010081: COL6A1
subclass of: SO_0000673
so part of: COL6A1
location: complement(join(174319..174929,175687..175716,176080..176254,176454..176637,176879..176988,178064..178197,179032..179040,179786..179822,179914..179949,180311..180376,180822..180884,181437..181472,181557..181607,181720..181782,182564..182626,185910..185972,187874..187936,188074..188109,188191..188244,188406..188468,188962..189024,189546..189599,189836..189880,189976..190002,190282..190308,190413..190457,191206..191259,191544..191588,191686..191706,191890..191910,192002..192166,192302..192461,192732..192932,194995..195124,195833..195941))
location: region:174319-195941:-1
so has part: feature:195833-195941:-1:exon
so has part: feature:194995-195124:-1:exon
so has part: feature:192732-192932:-1:exon
so has part: feature:192302-192461:-1:exon
so has part: feature:192002-192166:-1:exon
so has part: feature:191890-191910:-1:exon
so has part: feature:191686-191706:-1:exon
so has part: feature:191544-191588:-1:exon
so has part: feature:191206-191259:-1:exon
so has part: feature:190413-190457:-1:exon
so has part: feature:190282-190308:-1:exon
so has part: feature:189976-190002:-1:exon
so has part: feature:189836-189880:-1:exon
so has part: feature:189546-189599:-1:exon
so has part: feature:188962-189024:-1:exon
so has part: feature:188406-188468:-1:exon
so has part: feature:188191-188244:-1:exon
so has part: feature:188074-188109:-1:exon
so has part: feature:187874-187936:-1:exon
so has part: feature:185910-185972:-1:exon
so has part: feature:182564-182626:-1:exon
so has part: feature:181720-181782:-1:exon
so has part: feature:181557-181607:-1:exon
so has part: feature:181437-181472:-1:exon
so has part: feature:180822-180884:-1:exon
so has part: feature:180311-180376:-1:exon
so has part: feature:179914-179949:-1:exon
so has part: feature:179786-179822:-1:exon
so has part: feature:179032-179040:-1:exon
so has part: feature:178064-178197:-1:exon
so has part: feature:176879-176988:-1:exon
so has part: feature:176454-176637:-1:exon
so has part: feature:176080-176254:-1:exon
so has part: feature:175687-175716:-1:exon
so has part: feature:174319-174929:-1:exon

XP_016155332.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:195833-195941:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:194995-195124:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:192732-192932:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:192302-192461:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:192002-192166:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:191890-191910:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:191686-191706:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:191544-191588:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:191206-191259:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:190413-190457:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:190282-190308:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:189976-190002:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:189836-189880:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:189546-189599:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:188962-189024:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:188406-188468:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:188191-188244:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:188074-188109:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:187874-187936:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:185910-185972:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:182564-182626:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:181720-181782:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:181557-181607:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:181437-181472:-1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:180822-180884:-1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:180311-180376:-1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:179914-179949:-1:exon

urn:…
SIO_000300: 28
SIO_000628: feature:179786-179822:-1:exon

urn:…
SIO_000300: 29
SIO_000628: feature:179032-179040:-1:exon

urn:…
SIO_000300: 30
SIO_000628: feature:178064-178197:-1:exon

urn:…
SIO_000300: 31
SIO_000628: feature:176879-176988:-1:exon

urn:…
SIO_000300: 32
SIO_000628: feature:176454-176637:-1:exon

urn:…
SIO_000300: 33
SIO_000628: feature:176080-176254:-1:exon

urn:…
SIO_000300: 34
SIO_000628: feature:175687-175716:-1:exon

urn:…
SIO_000300: 35
SIO_000628: feature:174319-174929:-1:exon

COL6A1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59894
gene: COL6A1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: collagen alpha-1(VI) chain isoform X1
translation: MKLRDFLLTLLLPAGFLWEGSCAQRPEIITQVSSAEDCPVDLFFVLDTSESVALRVKPFGDLVTQVKDFTNRFIDKLTRRYYRCDRNLVWNAGALHYSDEVVLIKSLTPMPSGQSELKNRVSAVNYIGKGTYTDCAIKRGIEELLIGGSHHKENKYLIVVTDGHPLEGYKEPCGGLDDAANEAKLLGIKVFSVAISPNHLDQRLNIIATDHAYRRNFRGGGGGGGAYRRNFTATSLKPTREMDVEETINTIIDMIKLNTEQSCCSFECQPPRGPPGPPGDPGHEGERGKPGLPGQKGEAGDPGRPGDMGPVGYQGMKGDKGSRGEKGSRGAKGAKGEKGRRGIDGIDGMKGEAGYPGLPGCKGSPGFDGAQGPPGPKGDPGAFGPKGAKGEPGNDGKPGRQGIPGNPGEKGAPGNRGEPGPAGETGDEGALGEDGPPGERGSNGERGPPGSPGERGPRGQPGEPGPSGDQGREGPLGPPGDQGEPGPPGPKGYRGDDGPPGSEGPKGLPGAPGLPGDPGLMGERGEDGPPGNGTIGFTGAPGQPGDRGNPGINGTKGYVGPKGDEGEAGDPGNDNLIPGPSGIKGAKGHRGREGPPGPPGPVGPPGPDECEILDIIMKMCSCCECTCGPVDLLFVLDSSESIGLQNFQIAKDFIIKVIDRLSKDERVKFEAGESRVGVVQYSHDNTQELVAMGDANIDNIGALKQAVKNLQWIAGGTYTGEALQFTKDNLLRRFTSDKRVAIVITDGRSDTLRDPTPLNSLCDVTPVVSLGIGDIFRNPPNPDHLNDIACLSRPTRPGLSIQRDNYAELLDDTFLQNITSYVCQEKKCPDYTCPITFTGPADITLLVDSSTSVGSKNFETTKKFVKQLAGRFLEAGKPADDSVRISVVQYSGRNQQKVEAQFQYNYTVIAKAIDSMEFMNDATDVNSALQFITELYRRSARAAAKKRVLVFSDGHSQGITARAIERAVQDAQRADIEIYVLAVGSQANEPNIRVLVTGKSTDYDVAYGERHLFRVPDYTSLLRGVFYQTVSRKIAVD
SIO_010081: COL6A1
subclass of: SO_0000673
so part of: COL6A1
location: complement(join(174319..174929,175687..175716,176080..176254,176454..176637,176879..176988,178064..178197,179032..179040,179786..179822,179914..179949,180311..180376,180822..180884,181437..181472,181557..181607,181720..181782,182564..182626,185910..185972,187874..187936,188074..188109,188191..188244,188406..188468,188962..189024,189546..189599,189836..189880,189976..190002,190282..190308,190413..190457,191206..191259,191544..191588,191686..191706,191890..191910,192002..192166,192302..192461,192732..192932,194995..195124,195833..195941))
location: region:174319-195941:-1
so has part: feature:195833-195941:-1:exon
so has part: feature:194995-195124:-1:exon
so has part: feature:192732-192932:-1:exon
so has part: feature:192302-192461:-1:exon
so has part: feature:192002-192166:-1:exon
so has part: feature:191890-191910:-1:exon
so has part: feature:191686-191706:-1:exon
so has part: feature:191544-191588:-1:exon
so has part: feature:191206-191259:-1:exon
so has part: feature:190413-190457:-1:exon
so has part: feature:190282-190308:-1:exon
so has part: feature:189976-190002:-1:exon
so has part: feature:189836-189880:-1:exon
so has part: feature:189546-189599:-1:exon
so has part: feature:188962-189024:-1:exon
so has part: feature:188406-188468:-1:exon
so has part: feature:188191-188244:-1:exon
so has part: feature:188074-188109:-1:exon
so has part: feature:187874-187936:-1:exon
so has part: feature:185910-185972:-1:exon
so has part: feature:182564-182626:-1:exon
so has part: feature:181720-181782:-1:exon
so has part: feature:181557-181607:-1:exon
so has part: feature:181437-181472:-1:exon
so has part: feature:180822-180884:-1:exon
so has part: feature:180311-180376:-1:exon
so has part: feature:179914-179949:-1:exon
so has part: feature:179786-179822:-1:exon
so has part: feature:179032-179040:-1:exon
so has part: feature:178064-178197:-1:exon
so has part: feature:176879-176988:-1:exon
so has part: feature:176454-176637:-1:exon
so has part: feature:176080-176254:-1:exon
so has part: feature:175687-175716:-1:exon
so has part: feature:174319-174929:-1:exon

XP_005048987.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:195833-195941:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:194995-195124:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:192732-192932:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:192302-192461:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:192002-192166:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:191890-191910:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:191686-191706:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:191544-191588:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:191206-191259:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:190413-190457:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:190282-190308:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:189976-190002:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:189836-189880:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:189546-189599:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:188962-189024:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:188406-188468:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:188191-188244:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:188074-188109:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:187874-187936:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:185910-185972:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:182564-182626:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:181720-181782:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:181557-181607:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:181437-181472:-1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:180822-180884:-1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:180311-180376:-1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:179914-179949:-1:exon

urn:…
SIO_000300: 28
SIO_000628: feature:179786-179822:-1:exon

urn:…
SIO_000300: 29
SIO_000628: feature:179032-179040:-1:exon

urn:…
SIO_000300: 30
SIO_000628: feature:178064-178197:-1:exon

urn:…
SIO_000300: 31
SIO_000628: feature:176879-176988:-1:exon

urn:…
SIO_000300: 32
SIO_000628: feature:176454-176637:-1:exon

urn:…
SIO_000300: 33
SIO_000628: feature:176080-176254:-1:exon

urn:…
SIO_000300: 34
SIO_000628: feature:175687-175716:-1:exon

urn:…
SIO_000300: 35
SIO_000628: feature:174319-174929:-1:exon

PCBP3
type: Gene
subclass of: SO_0000704
RO_0002162: 59894
gene: PCBP3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(203671..258222)
location: region:203671-258222:-1
so has part: feature:203671-258222:-1:exon
subclass of: SO_0000010

101818851
type: Gene
SIO_000068: ncbigene

position:203671:-1
position: 203671
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:258222:-1
position: 258222
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:203671-258222:-1:exon

PCBP3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59894
gene: PCBP3
product: poly(rC) binding protein 3, transcript variant X9
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 14 samples with support for all annotated introns
transcript id: XM_005048928.1
SIO_010081: PCBP3
subclass of: SO_0000673
so part of: PCBP3
location: complement(join(203671..204081,212394..212563,215326..215378,218532..218591,219242..219317,223346..223387,228279..228407,228676..228807,229312..229428,229950..229982,230727..230750,231028..231099,248019..248124,249282..249356,254988..255078,258086..258222))
location: region:203671-258222:-1
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so has part: feature:218532-218591:-1:exon
so has part: feature:215326-215378:-1:exon
so has part: feature:212394-212563:-1:exon
so has part: feature:203671-204081:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:258086-258222:-1:exon

position:258086:-1
position: 258086
reference: sequence
type: ReverseStrandPosition
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urn:…
SIO_000300: 2
SIO_000628: feature:254988-255078:-1:exon

position:254988:-1
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position:255078:-1
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reference: sequence
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urn:…
SIO_000300: 3
SIO_000628: feature:249282-249356:-1:exon

position:249282:-1
position: 249282
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position:249356:-1
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urn:…
SIO_000300: 4
SIO_000628: feature:248019-248124:-1:exon

position:248019:-1
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reference: sequence
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position:248124:-1
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urn:…
SIO_000300: 5
SIO_000628: feature:231028-231099:-1:exon

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urn:…
SIO_000300: 6
SIO_000628: feature:230727-230750:-1:exon

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urn:…
SIO_000300: 7
SIO_000628: feature:229950-229982:-1:exon

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urn:…
SIO_000300: 8
SIO_000628: feature:229312-229428:-1:exon

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urn:…
SIO_000300: 9
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reference: sequence
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urn:…
SIO_000300: 10
SIO_000628: feature:228279-228407:-1:exon

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reference: sequence
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urn:…
SIO_000300: 11
SIO_000628: feature:223346-223387:-1:exon

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urn:…
SIO_000300: 12
SIO_000628: feature:219242-219317:-1:exon

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reference: sequence
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position:219317:-1
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reference: sequence
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urn:…
SIO_000300: 13
SIO_000628: feature:218532-218591:-1:exon

position:218532:-1
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reference: sequence
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urn:…
SIO_000300: 14
SIO_000628: feature:215326-215378:-1:exon

position:215326:-1
position: 215326
reference: sequence
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position:215378:-1
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reference: sequence
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urn:…
SIO_000300: 15
SIO_000628: feature:212394-212563:-1:exon

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reference: sequence
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position:212563:-1
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urn:…
SIO_000300: 16
SIO_000628: feature:203671-204081:-1:exon

position:204081:-1
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reference: sequence
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PCBP3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59894
gene: PCBP3
product: poly(rC) binding protein 3, transcript variant X8
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 14 samples with support for all annotated introns
transcript id: XM_005048927.1
SIO_010081: PCBP3
subclass of: SO_0000673
so part of: PCBP3
location: complement(join(203671..204081,212394..212563,215326..215378,218532..218591,219242..219320,223346..223387,228279..228407,228676..228807,229312..229428,229950..229982,230727..230750,231028..231099,248019..248124,249282..249356,254988..255078,258086..258222))
location: region:203671-258222:-1
so has part: feature:258086-258222:-1:exon
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so has part: feature:230727-230750:-1:exon
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so has part: feature:219242-219320:-1:exon
so has part: feature:218532-218591:-1:exon
so has part: feature:215326-215378:-1:exon
so has part: feature:212394-212563:-1:exon
so has part: feature:203671-204081:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:258086-258222:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:254988-255078:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:249282-249356:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:248019-248124:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:231028-231099:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:230727-230750:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:229950-229982:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:229312-229428:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:228676-228807:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:228279-228407:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:223346-223387:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:219242-219320:-1:exon

position:219320:-1
position: 219320
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:218532-218591:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:215326-215378:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:212394-212563:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:203671-204081:-1:exon

PCBP3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59894
gene: PCBP3
product: poly(rC) binding protein 3, transcript variant X6
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns
transcript id: XM_016299814.1
SIO_010081: PCBP3
subclass of: SO_0000673
so part of: PCBP3
location: complement(join(203671..204081,212394..212563,215326..215378,219242..219317,223346..223387,225932..226006,228279..228407,228676..228807,229312..229428,229950..229982,230727..230750,231028..231099,248019..248124,249282..249356,254988..255078,258086..258222))
location: region:203671-258222:-1
so has part: feature:258086-258222:-1:exon
so has part: feature:254988-255078:-1:exon
so has part: feature:249282-249356:-1:exon
so has part: feature:248019-248124:-1:exon
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so has part: feature:230727-230750:-1:exon
so has part: feature:229950-229982:-1:exon
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so has part: feature:228676-228807:-1:exon
so has part: feature:228279-228407:-1:exon
so has part: feature:225932-226006:-1:exon
so has part: feature:223346-223387:-1:exon
so has part: feature:219242-219317:-1:exon
so has part: feature:215326-215378:-1:exon
so has part: feature:212394-212563:-1:exon
so has part: feature:203671-204081:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:258086-258222:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:254988-255078:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:249282-249356:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:248019-248124:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:231028-231099:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:230727-230750:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:229950-229982:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:229312-229428:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:228676-228807:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:228279-228407:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:225932-226006:-1:exon

position:225932:-1
position: 225932
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:226006:-1
position: 226006
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:223346-223387:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:219242-219317:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:215326-215378:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:212394-212563:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:203671-204081:-1:exon

PCBP3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59894
gene: PCBP3
product: poly(rC) binding protein 3, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 13 samples with support for all annotated introns
transcript id: XM_005048924.1
SIO_010081: PCBP3
subclass of: SO_0000673
so part of: PCBP3
location: complement(join(203671..204081,212394..212563,215326..215378,218532..218591,219242..219317,223346..223387,225932..226006,228279..228407,228676..228807,229312..229428,229950..229982,230727..230750,231028..231099,248019..248124,249282..249356,254988..255078,258086..258222))
location: region:203671-258222:-1
so has part: feature:258086-258222:-1:exon
so has part: feature:254988-255078:-1:exon
so has part: feature:249282-249356:-1:exon
so has part: feature:248019-248124:-1:exon
so has part: feature:231028-231099:-1:exon
so has part: feature:230727-230750:-1:exon
so has part: feature:229950-229982:-1:exon
so has part: feature:229312-229428:-1:exon
so has part: feature:228676-228807:-1:exon
so has part: feature:228279-228407:-1:exon
so has part: feature:225932-226006:-1:exon
so has part: feature:223346-223387:-1:exon
so has part: feature:219242-219317:-1:exon
so has part: feature:218532-218591:-1:exon
so has part: feature:215326-215378:-1:exon
so has part: feature:212394-212563:-1:exon
so has part: feature:203671-204081:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:258086-258222:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:254988-255078:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:249282-249356:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:248019-248124:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:231028-231099:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:230727-230750:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:229950-229982:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:229312-229428:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:228676-228807:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:228279-228407:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:225932-226006:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:223346-223387:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:219242-219317:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:218532-218591:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:215326-215378:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:212394-212563:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:203671-204081:-1:exon

PCBP3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59894
gene: PCBP3
product: poly(rC) binding protein 3, transcript variant X5
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns
transcript id: XM_016299813.1
SIO_010081: PCBP3
subclass of: SO_0000673
so part of: PCBP3
location: complement(join(203671..204081,212394..212563,215326..215378,219242..219320,223346..223387,225932..226006,228279..228407,228676..228807,229312..229428,229950..229982,230727..230750,231028..231099,248019..248124,249282..249356,254988..255078,258086..258222))
location: region:203671-258222:-1
so has part: feature:258086-258222:-1:exon
so has part: feature:254988-255078:-1:exon
so has part: feature:249282-249356:-1:exon
so has part: feature:248019-248124:-1:exon
so has part: feature:231028-231099:-1:exon
so has part: feature:230727-230750:-1:exon
so has part: feature:229950-229982:-1:exon
so has part: feature:229312-229428:-1:exon
so has part: feature:228676-228807:-1:exon
so has part: feature:228279-228407:-1:exon
so has part: feature:225932-226006:-1:exon
so has part: feature:223346-223387:-1:exon
so has part: feature:219242-219320:-1:exon
so has part: feature:215326-215378:-1:exon
so has part: feature:212394-212563:-1:exon
so has part: feature:203671-204081:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:258086-258222:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:254988-255078:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:249282-249356:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:248019-248124:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:231028-231099:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:230727-230750:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:229950-229982:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:229312-229428:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:228676-228807:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:228279-228407:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:225932-226006:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:223346-223387:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:219242-219320:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:215326-215378:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:212394-212563:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:203671-204081:-1:exon

PCBP3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59894
gene: PCBP3
product: poly(rC) binding protein 3, transcript variant X16
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 13 samples with support for all annotated introns
transcript id: XM_016299821.1
SIO_010081: PCBP3
subclass of: SO_0000673
so part of: PCBP3
location: complement(join(203671..204081,215326..215378,218532..218591,219242..219320,223346..223387,225932..226006,228279..228407,228676..228807,229312..229428,229950..229982,230727..230750,231028..231099,248019..248124,249282..249356,254988..255078,258086..258222))
location: region:203671-258222:-1
so has part: feature:258086-258222:-1:exon
so has part: feature:254988-255078:-1:exon
so has part: feature:249282-249356:-1:exon
so has part: feature:248019-248124:-1:exon
so has part: feature:231028-231099:-1:exon
so has part: feature:230727-230750:-1:exon
so has part: feature:229950-229982:-1:exon
so has part: feature:229312-229428:-1:exon
so has part: feature:228676-228807:-1:exon
so has part: feature:228279-228407:-1:exon
so has part: feature:225932-226006:-1:exon
so has part: feature:223346-223387:-1:exon
so has part: feature:219242-219320:-1:exon
so has part: feature:218532-218591:-1:exon
so has part: feature:215326-215378:-1:exon
so has part: feature:203671-204081:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:258086-258222:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:254988-255078:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:249282-249356:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:248019-248124:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:231028-231099:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:230727-230750:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:229950-229982:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:229312-229428:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:228676-228807:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:228279-228407:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:225932-226006:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:223346-223387:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:219242-219320:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:218532-218591:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:215326-215378:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:203671-204081:-1:exon

PCBP3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59894
gene: PCBP3
product: poly(rC) binding protein 3, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 13 samples with support for all annotated introns
transcript id: XM_005048923.1
SIO_010081: PCBP3
subclass of: SO_0000673
so part of: PCBP3
location: complement(join(203671..204081,212394..212563,215326..215378,218532..218591,219242..219320,223346..223387,225932..226006,228279..228407,228676..228807,229312..229428,229950..229982,230727..230750,231028..231099,248019..248124,249282..249356,254988..255078,258086..258222))
location: region:203671-258222:-1
so has part: feature:258086-258222:-1:exon
so has part: feature:254988-255078:-1:exon
so has part: feature:249282-249356:-1:exon
so has part: feature:248019-248124:-1:exon
so has part: feature:231028-231099:-1:exon
so has part: feature:230727-230750:-1:exon
so has part: feature:229950-229982:-1:exon
so has part: feature:229312-229428:-1:exon
so has part: feature:228676-228807:-1:exon
so has part: feature:228279-228407:-1:exon
so has part: feature:225932-226006:-1:exon
so has part: feature:223346-223387:-1:exon
so has part: feature:219242-219320:-1:exon
so has part: feature:218532-218591:-1:exon
so has part: feature:215326-215378:-1:exon
so has part: feature:212394-212563:-1:exon
so has part: feature:203671-204081:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:258086-258222:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:254988-255078:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:249282-249356:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:248019-248124:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:231028-231099:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:230727-230750:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:229950-229982:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:229312-229428:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:228676-228807:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:228279-228407:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:225932-226006:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:223346-223387:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:219242-219320:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:218532-218591:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:215326-215378:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:212394-212563:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:203671-204081:-1:exon

PCBP3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59894
gene: PCBP3
product: poly(rC) binding protein 3, transcript variant X13
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 13 samples with support for all annotated introns
transcript id: XM_016299817.1
SIO_010081: PCBP3
subclass of: SO_0000673
so part of: PCBP3
location: complement(join(203671..204081,212394..212563,215326..215378,218532..218591,219242..219320,223346..223387,225932..226006,228279..228407,228676..228807,229312..229428,229950..229982,230727..230750,231028..231170,248019..248105))
location: region:203671-248105:-1
so has part: feature:248019-248105:-1:exon
so has part: feature:231028-231170:-1:exon
so has part: feature:230727-230750:-1:exon
so has part: feature:229950-229982:-1:exon
so has part: feature:229312-229428:-1:exon
so has part: feature:228676-228807:-1:exon
so has part: feature:228279-228407:-1:exon
so has part: feature:225932-226006:-1:exon
so has part: feature:223346-223387:-1:exon
so has part: feature:219242-219320:-1:exon
so has part: feature:218532-218591:-1:exon
so has part: feature:215326-215378:-1:exon
so has part: feature:212394-212563:-1:exon
so has part: feature:203671-204081:-1:exon

position:248105:-1
position: 248105
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:248019-248105:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:231028-231170:-1:exon

position:231170:-1
position: 231170
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:230727-230750:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:229950-229982:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:229312-229428:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:228676-228807:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:228279-228407:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:225932-226006:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:223346-223387:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:219242-219320:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:218532-218591:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:215326-215378:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:212394-212563:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:203671-204081:-1:exon

PCBP3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59894
gene: PCBP3
product: poly(rC) binding protein 3, transcript variant X14
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 13 samples with support for all annotated introns
transcript id: XM_016299819.1
SIO_010081: PCBP3
subclass of: SO_0000673
so part of: PCBP3
location: complement(join(203671..204081,212394..212563,215326..215378,218532..218591,219242..219320,223346..223387,225932..226006,228279..228407,228676..228807,229312..229428,229950..229982,230727..230750,231028..231099,248014..248100))
location: region:203671-248100:-1
so has part: feature:248014-248100:-1:exon
so has part: feature:231028-231099:-1:exon
so has part: feature:230727-230750:-1:exon
so has part: feature:229950-229982:-1:exon
so has part: feature:229312-229428:-1:exon
so has part: feature:228676-228807:-1:exon
so has part: feature:228279-228407:-1:exon
so has part: feature:225932-226006:-1:exon
so has part: feature:223346-223387:-1:exon
so has part: feature:219242-219320:-1:exon
so has part: feature:218532-218591:-1:exon
so has part: feature:215326-215378:-1:exon
so has part: feature:212394-212563:-1:exon
so has part: feature:203671-204081:-1:exon

position:248100:-1
position: 248100
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:248014-248100:-1:exon

position:248014:-1
position: 248014
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:231028-231099:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:230727-230750:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:229950-229982:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:229312-229428:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:228676-228807:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:228279-228407:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:225932-226006:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:223346-223387:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:219242-219320:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:218532-218591:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:215326-215378:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:212394-212563:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:203671-204081:-1:exon

PCBP3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59894
gene: PCBP3
product: poly(rC) binding protein 3, transcript variant X11
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 13 samples with support for all annotated introns
transcript id: XM_016299815.1
SIO_010081: PCBP3
subclass of: SO_0000673
so part of: PCBP3
location: complement(join(203671..204081,212394..212563,215326..215378,218532..218591,219242..219320,223346..223387,225932..226006,228279..228407,228676..228807,229312..229428,229950..229982,230727..230750,231028..231170,248014..248100))
location: region:203671-248100:-1
so has part: feature:248014-248100:-1:exon
so has part: feature:231028-231170:-1:exon
so has part: feature:230727-230750:-1:exon
so has part: feature:229950-229982:-1:exon
so has part: feature:229312-229428:-1:exon
so has part: feature:228676-228807:-1:exon
so has part: feature:228279-228407:-1:exon
so has part: feature:225932-226006:-1:exon
so has part: feature:223346-223387:-1:exon
so has part: feature:219242-219320:-1:exon
so has part: feature:218532-218591:-1:exon
so has part: feature:215326-215378:-1:exon
so has part: feature:212394-212563:-1:exon
so has part: feature:203671-204081:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:248014-248100:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:231028-231170:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:230727-230750:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:229950-229982:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:229312-229428:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:228676-228807:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:228279-228407:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:225932-226006:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:223346-223387:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:219242-219320:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:218532-218591:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:215326-215378:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:212394-212563:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:203671-204081:-1:exon

PCBP3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59894
gene: PCBP3
product: poly(rC) binding protein 3, transcript variant X12
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XM_016299816.1
SIO_010081: PCBP3
subclass of: SO_0000673
so part of: PCBP3
location: complement(join(203671..204081,212394..212563,215326..215378,218532..218591,219242..219320,223346..223387,225932..226006,228279..228407,228676..228807,229312..229428,229950..229982,230727..230750,231028..231170,243511..243601,248014..248098))
location: region:203671-248098:-1
so has part: feature:248014-248098:-1:exon
so has part: feature:243511-243601:-1:exon
so has part: feature:231028-231170:-1:exon
so has part: feature:230727-230750:-1:exon
so has part: feature:229950-229982:-1:exon
so has part: feature:229312-229428:-1:exon
so has part: feature:228676-228807:-1:exon
so has part: feature:228279-228407:-1:exon
so has part: feature:225932-226006:-1:exon
so has part: feature:223346-223387:-1:exon
so has part: feature:219242-219320:-1:exon
so has part: feature:218532-218591:-1:exon
so has part: feature:215326-215378:-1:exon
so has part: feature:212394-212563:-1:exon
so has part: feature:203671-204081:-1:exon

position:248098:-1
position: 248098
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:248014-248098:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:243511-243601:-1:exon

position:243511:-1
position: 243511
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:243601:-1
position: 243601
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:231028-231170:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:230727-230750:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:229950-229982:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:229312-229428:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:228676-228807:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:228279-228407:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:225932-226006:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:223346-223387:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:219242-219320:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:218532-218591:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:215326-215378:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:212394-212563:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:203671-204081:-1:exon

PCBP3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59894
gene: PCBP3
product: poly(rC) binding protein 3, transcript variant X15
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XM_016299820.1
SIO_010081: PCBP3
subclass of: SO_0000673
so part of: PCBP3
location: complement(join(203671..204081,212394..212563,215326..215378,218532..218591,219242..219320,223346..223387,225932..226006,228279..228407,228676..228807,229312..229428,229950..229982,230727..230750,231028..231099,247363..247413,248014..248092))
location: region:203671-248092:-1
so has part: feature:248014-248092:-1:exon
so has part: feature:247363-247413:-1:exon
so has part: feature:231028-231099:-1:exon
so has part: feature:230727-230750:-1:exon
so has part: feature:229950-229982:-1:exon
so has part: feature:229312-229428:-1:exon
so has part: feature:228676-228807:-1:exon
so has part: feature:228279-228407:-1:exon
so has part: feature:225932-226006:-1:exon
so has part: feature:223346-223387:-1:exon
so has part: feature:219242-219320:-1:exon
so has part: feature:218532-218591:-1:exon
so has part: feature:215326-215378:-1:exon
so has part: feature:212394-212563:-1:exon
so has part: feature:203671-204081:-1:exon

position:248092:-1
position: 248092
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:248014-248092:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:247363-247413:-1:exon

position:247363:-1
position: 247363
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:247413:-1
position: 247413
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:231028-231099:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:230727-230750:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:229950-229982:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:229312-229428:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:228676-228807:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:228279-228407:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:225932-226006:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:223346-223387:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:219242-219320:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:218532-218591:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:215326-215378:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:212394-212563:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:203671-204081:-1:exon

PCBP3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59894
gene: PCBP3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: poly(rC)-binding protein 3 isoform X9
translation: MPWTAGLPAVLSMLFSGVARPSQESLWSSRPSCREMESKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFKAFAMIAYKFEEDITNSMSNSTATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAIIQCVKQICVVMLEAYTIQGQYAIPHPDLTKLHQLAMQQTPFTPLGQTTPAFPGEKLPLHSSEEAQNLMGQSSGLDASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINASSADPDPHGRNTFTA
SIO_010081: PCBP3
subclass of: SO_0000673
so part of: PCBP3
location: complement(join(204036..204081,212394..212563,215326..215378,218532..218591,219242..219317,223346..223387,228279..228407,228676..228807,229312..229428,229950..229982,230727..230750,231028..231099,248019..248120))
location: region:204036-248120:-1
so has part: feature:248019-248120:-1:exon
so has part: feature:231028-231099:-1:exon
so has part: feature:230727-230750:-1:exon
so has part: feature:229950-229982:-1:exon
so has part: feature:229312-229428:-1:exon
so has part: feature:228676-228807:-1:exon
so has part: feature:228279-228407:-1:exon
so has part: feature:223346-223387:-1:exon
so has part: feature:219242-219317:-1:exon
so has part: feature:218532-218591:-1:exon
so has part: feature:215326-215378:-1:exon
so has part: feature:212394-212563:-1:exon
so has part: feature:204036-204081:-1:exon

XP_005048985.1
type: Protein
SIO_000068: ncbiprotein

position:204036:-1
position: 204036
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:248120:-1
position: 248120
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:248019-248120:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:231028-231099:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:230727-230750:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:229950-229982:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:229312-229428:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:228676-228807:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:228279-228407:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:223346-223387:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:219242-219317:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:218532-218591:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:215326-215378:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:212394-212563:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:204036-204081:-1:exon

PCBP3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59894
gene: PCBP3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: poly(rC)-binding protein 3 isoform X8
translation: MPWTAGLPAVLSMLFSGVARPSQESLWSSRPSCREMESKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFKAFAMIAYKFEEDITNSMSNSTATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAIIQCVKQICVVMLEAYTIQGQYAIPHPDQLTKLHQLAMQQTPFTPLGQTTPAFPGEKLPLHSSEEAQNLMGQSSGLDASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINASSADPDPHGRNTFTA
SIO_010081: PCBP3
subclass of: SO_0000673
so part of: PCBP3
location: complement(join(204036..204081,212394..212563,215326..215378,218532..218591,219242..219320,223346..223387,228279..228407,228676..228807,229312..229428,229950..229982,230727..230750,231028..231099,248019..248120))
location: region:204036-248120:-1
so has part: feature:248019-248120:-1:exon
so has part: feature:231028-231099:-1:exon
so has part: feature:230727-230750:-1:exon
so has part: feature:229950-229982:-1:exon
so has part: feature:229312-229428:-1:exon
so has part: feature:228676-228807:-1:exon
so has part: feature:228279-228407:-1:exon
so has part: feature:223346-223387:-1:exon
so has part: feature:219242-219320:-1:exon
so has part: feature:218532-218591:-1:exon
so has part: feature:215326-215378:-1:exon
so has part: feature:212394-212563:-1:exon
so has part: feature:204036-204081:-1:exon

XP_005048984.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:248019-248120:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:231028-231099:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:230727-230750:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:229950-229982:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:229312-229428:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:228676-228807:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:228279-228407:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:223346-223387:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:219242-219320:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:218532-218591:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:215326-215378:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:212394-212563:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:204036-204081:-1:exon

PCBP3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59894
gene: PCBP3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: poly(rC)-binding protein 3 isoform X6
translation: MPWTAGLPAVLSMLFSGVARPSQESLWSSRPSCREMESKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFKAFAMIAYKFEEDITNSMSNSTATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYRPKPASTPVIFAGGQAYTIQGQYAIPHPDLTKLHQLAMQQTPFTPLGQTTPAFPGLDASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINASSADPDPHGRNTFTA
SIO_010081: PCBP3
subclass of: SO_0000673
so part of: PCBP3
location: complement(join(204036..204081,212394..212563,215326..215378,219242..219317,223346..223387,225932..226006,228279..228407,228676..228807,229312..229428,229950..229982,230727..230750,231028..231099,248019..248120))
location: region:204036-248120:-1
so has part: feature:248019-248120:-1:exon
so has part: feature:231028-231099:-1:exon
so has part: feature:230727-230750:-1:exon
so has part: feature:229950-229982:-1:exon
so has part: feature:229312-229428:-1:exon
so has part: feature:228676-228807:-1:exon
so has part: feature:228279-228407:-1:exon
so has part: feature:225932-226006:-1:exon
so has part: feature:223346-223387:-1:exon
so has part: feature:219242-219317:-1:exon
so has part: feature:215326-215378:-1:exon
so has part: feature:212394-212563:-1:exon
so has part: feature:204036-204081:-1:exon

XP_016155300.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:248019-248120:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:231028-231099:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:230727-230750:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:229950-229982:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:229312-229428:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:228676-228807:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:228279-228407:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:225932-226006:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:223346-223387:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:219242-219317:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:215326-215378:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:212394-212563:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:204036-204081:-1:exon

PCBP3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59894
gene: PCBP3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: poly(rC)-binding protein 3 isoform X2
translation: MPWTAGLPAVLSMLFSGVARPSQESLWSSRPSCREMESKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFKAFAMIAYKFEEDITNSMSNSTATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYRPKPASTPVIFAGGQAYTIQGQYAIPHPDLTKLHQLAMQQTPFTPLGQTTPAFPGEKLPLHSSEEAQNLMGQSSGLDASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINASSADPDPHGRNTFTA
SIO_010081: PCBP3
subclass of: SO_0000673
so part of: PCBP3
location: complement(join(204036..204081,212394..212563,215326..215378,218532..218591,219242..219317,223346..223387,225932..226006,228279..228407,228676..228807,229312..229428,229950..229982,230727..230750,231028..231099,248019..248120))
location: region:204036-248120:-1
so has part: feature:248019-248120:-1:exon
so has part: feature:231028-231099:-1:exon
so has part: feature:230727-230750:-1:exon
so has part: feature:229950-229982:-1:exon
so has part: feature:229312-229428:-1:exon
so has part: feature:228676-228807:-1:exon
so has part: feature:228279-228407:-1:exon
so has part: feature:225932-226006:-1:exon
so has part: feature:223346-223387:-1:exon
so has part: feature:219242-219317:-1:exon
so has part: feature:218532-218591:-1:exon
so has part: feature:215326-215378:-1:exon
so has part: feature:212394-212563:-1:exon
so has part: feature:204036-204081:-1:exon

XP_005048981.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:248019-248120:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:231028-231099:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:230727-230750:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:229950-229982:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:229312-229428:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:228676-228807:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:228279-228407:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:225932-226006:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:223346-223387:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:219242-219317:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:218532-218591:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:215326-215378:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:212394-212563:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:204036-204081:-1:exon

PCBP3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59894
gene: PCBP3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: poly(rC)-binding protein 3 isoform X5
translation: MPWTAGLPAVLSMLFSGVARPSQESLWSSRPSCREMESKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFKAFAMIAYKFEEDITNSMSNSTATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYRPKPASTPVIFAGGQAYTIQGQYAIPHPDQLTKLHQLAMQQTPFTPLGQTTPAFPGLDASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINASSADPDPHGRNTFTA
SIO_010081: PCBP3
subclass of: SO_0000673
so part of: PCBP3
location: complement(join(204036..204081,212394..212563,215326..215378,219242..219320,223346..223387,225932..226006,228279..228407,228676..228807,229312..229428,229950..229982,230727..230750,231028..231099,248019..248120))
location: region:204036-248120:-1
so has part: feature:248019-248120:-1:exon
so has part: feature:231028-231099:-1:exon
so has part: feature:230727-230750:-1:exon
so has part: feature:229950-229982:-1:exon
so has part: feature:229312-229428:-1:exon
so has part: feature:228676-228807:-1:exon
so has part: feature:228279-228407:-1:exon
so has part: feature:225932-226006:-1:exon
so has part: feature:223346-223387:-1:exon
so has part: feature:219242-219320:-1:exon
so has part: feature:215326-215378:-1:exon
so has part: feature:212394-212563:-1:exon
so has part: feature:204036-204081:-1:exon

XP_016155299.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:248019-248120:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:231028-231099:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:230727-230750:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:229950-229982:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:229312-229428:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:228676-228807:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:228279-228407:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:225932-226006:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:223346-223387:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:219242-219320:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:215326-215378:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:212394-212563:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:204036-204081:-1:exon

PCBP3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59894
gene: PCBP3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: poly(rC)-binding protein 3 isoform X1
translation: MPWTAGLPAVLSMLFSGVARPSQESLWSSRPSCREMESKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFKAFAMIAYKFEEDITNSMSNSTATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYRPKPASTPVIFAGGQAYTIQGQYAIPHPDQLTKLHQLAMQQTPFTPLGQTTPAFPGEKLPLHSSEEAQNLMGQSSGLDASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINASSADPDPHGRNTFTA
SIO_010081: PCBP3
subclass of: SO_0000673
so part of: PCBP3
location: complement(join(204036..204081,212394..212563,215326..215378,218532..218591,219242..219320,223346..223387,225932..226006,228279..228407,228676..228807,229312..229428,229950..229982,230727..230750,231028..231099,248019..248120))
location: region:204036-248120:-1
so has part: feature:248019-248120:-1:exon
so has part: feature:231028-231099:-1:exon
so has part: feature:230727-230750:-1:exon
so has part: feature:229950-229982:-1:exon
so has part: feature:229312-229428:-1:exon
so has part: feature:228676-228807:-1:exon
so has part: feature:228279-228407:-1:exon
so has part: feature:225932-226006:-1:exon
so has part: feature:223346-223387:-1:exon
so has part: feature:219242-219320:-1:exon
so has part: feature:218532-218591:-1:exon
so has part: feature:215326-215378:-1:exon
so has part: feature:212394-212563:-1:exon
so has part: feature:204036-204081:-1:exon

XP_005048980.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:248019-248120:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:231028-231099:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:230727-230750:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:229950-229982:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:229312-229428:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:228676-228807:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:228279-228407:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:225932-226006:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:223346-223387:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:219242-219320:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:218532-218591:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:215326-215378:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:212394-212563:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:204036-204081:-1:exon

PCBP3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59894
gene: PCBP3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: poly(rC)-binding protein 3 isoform X11
translation: MESKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFKAFAMIAYKFEEDITNSMSNSTATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYRPKPASTPVIFAGGQAYTIQGQYAIPHPDQLTKLHQLAMQQTPFTPLGQTTPAFPGEKLPLHSSEEAQNLMGQSSGLDASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINASSADPDPHGRNTFTA
SIO_010081: PCBP3
subclass of: SO_0000673
so part of: PCBP3
location: complement(join(204036..204081,212394..212563,215326..215378,218532..218591,219242..219320,223346..223387,225932..226006,228279..228407,228676..228807,229312..229428,229950..229982,230727..230750,231028..231096))
location: region:204036-231096:-1
so has part: feature:231028-231096:-1:exon
so has part: feature:230727-230750:-1:exon
so has part: feature:229950-229982:-1:exon
so has part: feature:229312-229428:-1:exon
so has part: feature:228676-228807:-1:exon
so has part: feature:228279-228407:-1:exon
so has part: feature:225932-226006:-1:exon
so has part: feature:223346-223387:-1:exon
so has part: feature:219242-219320:-1:exon
so has part: feature:218532-218591:-1:exon
so has part: feature:215326-215378:-1:exon
so has part: feature:212394-212563:-1:exon
so has part: feature:204036-204081:-1:exon

XP_016155301.1
type: Protein
SIO_000068: ncbiprotein

position:231096:-1
position: 231096
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:231028-231096:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:230727-230750:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:229950-229982:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:229312-229428:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:228676-228807:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:228279-228407:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:225932-226006:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:223346-223387:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:219242-219320:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:218532-218591:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:215326-215378:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:212394-212563:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:204036-204081:-1:exon

PCBP3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59894
gene: PCBP3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: poly(rC)-binding protein 3 isoform X11
translation: MESKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFKAFAMIAYKFEEDITNSMSNSTATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYRPKPASTPVIFAGGQAYTIQGQYAIPHPDQLTKLHQLAMQQTPFTPLGQTTPAFPGEKLPLHSSEEAQNLMGQSSGLDASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINASSADPDPHGRNTFTA
SIO_010081: PCBP3
subclass of: SO_0000673
so part of: PCBP3
location: complement(join(204036..204081,212394..212563,215326..215378,218532..218591,219242..219320,223346..223387,225932..226006,228279..228407,228676..228807,229312..229428,229950..229982,230727..230750,231028..231096))
location: region:204036-231096:-1
so has part: feature:231028-231096:-1:exon
so has part: feature:230727-230750:-1:exon
so has part: feature:229950-229982:-1:exon
so has part: feature:229312-229428:-1:exon
so has part: feature:228676-228807:-1:exon
so has part: feature:228279-228407:-1:exon
so has part: feature:225932-226006:-1:exon
so has part: feature:223346-223387:-1:exon
so has part: feature:219242-219320:-1:exon
so has part: feature:218532-218591:-1:exon
so has part: feature:215326-215378:-1:exon
so has part: feature:212394-212563:-1:exon
so has part: feature:204036-204081:-1:exon

XP_016155302.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:231028-231096:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:230727-230750:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:229950-229982:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:229312-229428:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:228676-228807:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:228279-228407:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:225932-226006:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:223346-223387:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:219242-219320:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:218532-218591:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:215326-215378:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:212394-212563:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:204036-204081:-1:exon

PCBP3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59894
gene: PCBP3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: poly(rC)-binding protein 3 isoform X11
translation: MESKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFKAFAMIAYKFEEDITNSMSNSTATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYRPKPASTPVIFAGGQAYTIQGQYAIPHPDQLTKLHQLAMQQTPFTPLGQTTPAFPGEKLPLHSSEEAQNLMGQSSGLDASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINASSADPDPHGRNTFTA
SIO_010081: PCBP3
subclass of: SO_0000673
so part of: PCBP3
location: complement(join(204036..204081,212394..212563,215326..215378,218532..218591,219242..219320,223346..223387,225932..226006,228279..228407,228676..228807,229312..229428,229950..229982,230727..230750,231028..231096))
location: region:204036-231096:-1
so has part: feature:231028-231096:-1:exon
so has part: feature:230727-230750:-1:exon
so has part: feature:229950-229982:-1:exon
so has part: feature:229312-229428:-1:exon
so has part: feature:228676-228807:-1:exon
so has part: feature:228279-228407:-1:exon
so has part: feature:225932-226006:-1:exon
so has part: feature:223346-223387:-1:exon
so has part: feature:219242-219320:-1:exon
so has part: feature:218532-218591:-1:exon
so has part: feature:215326-215378:-1:exon
so has part: feature:212394-212563:-1:exon
so has part: feature:204036-204081:-1:exon

XP_016155303.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:231028-231096:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:230727-230750:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:229950-229982:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:229312-229428:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:228676-228807:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:228279-228407:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:225932-226006:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:223346-223387:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:219242-219320:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:218532-218591:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:215326-215378:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:212394-212563:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:204036-204081:-1:exon

PCBP3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59894
gene: PCBP3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: poly(rC)-binding protein 3 isoform X11
translation: MESKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFKAFAMIAYKFEEDITNSMSNSTATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYRPKPASTPVIFAGGQAYTIQGQYAIPHPDQLTKLHQLAMQQTPFTPLGQTTPAFPGEKLPLHSSEEAQNLMGQSSGLDASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINASSADPDPHGRNTFTA
SIO_010081: PCBP3
subclass of: SO_0000673
so part of: PCBP3
location: complement(join(204036..204081,212394..212563,215326..215378,218532..218591,219242..219320,223346..223387,225932..226006,228279..228407,228676..228807,229312..229428,229950..229982,230727..230750,231028..231096))
location: region:204036-231096:-1
so has part: feature:231028-231096:-1:exon
so has part: feature:230727-230750:-1:exon
so has part: feature:229950-229982:-1:exon
so has part: feature:229312-229428:-1:exon
so has part: feature:228676-228807:-1:exon
so has part: feature:228279-228407:-1:exon
so has part: feature:225932-226006:-1:exon
so has part: feature:223346-223387:-1:exon
so has part: feature:219242-219320:-1:exon
so has part: feature:218532-218591:-1:exon
so has part: feature:215326-215378:-1:exon
so has part: feature:212394-212563:-1:exon
so has part: feature:204036-204081:-1:exon

XP_016155305.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:231028-231096:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:230727-230750:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:229950-229982:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:229312-229428:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:228676-228807:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:228279-228407:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:225932-226006:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:223346-223387:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:219242-219320:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:218532-218591:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:215326-215378:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:212394-212563:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:204036-204081:-1:exon

PCBP3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59894
gene: PCBP3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: poly(rC)-binding protein 3 isoform X11
translation: MESKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFKAFAMIAYKFEEDITNSMSNSTATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYRPKPASTPVIFAGGQAYTIQGQYAIPHPDQLTKLHQLAMQQTPFTPLGQTTPAFPGEKLPLHSSEEAQNLMGQSSGLDASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINASSADPDPHGRNTFTA
SIO_010081: PCBP3
subclass of: SO_0000673
so part of: PCBP3
location: complement(join(204036..204081,212394..212563,215326..215378,218532..218591,219242..219320,223346..223387,225932..226006,228279..228407,228676..228807,229312..229428,229950..229982,230727..230750,231028..231096))
location: region:204036-231096:-1
so has part: feature:231028-231096:-1:exon
so has part: feature:230727-230750:-1:exon
so has part: feature:229950-229982:-1:exon
so has part: feature:229312-229428:-1:exon
so has part: feature:228676-228807:-1:exon
so has part: feature:228279-228407:-1:exon
so has part: feature:225932-226006:-1:exon
so has part: feature:223346-223387:-1:exon
so has part: feature:219242-219320:-1:exon
so has part: feature:218532-218591:-1:exon
so has part: feature:215326-215378:-1:exon
so has part: feature:212394-212563:-1:exon
so has part: feature:204036-204081:-1:exon

XP_016155306.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:231028-231096:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:230727-230750:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:229950-229982:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:229312-229428:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:228676-228807:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:228279-228407:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:225932-226006:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:223346-223387:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:219242-219320:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:218532-218591:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:215326-215378:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:212394-212563:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:204036-204081:-1:exon

PCBP3
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 59894
gene: PCBP3
product: poly(rC) binding protein 3, transcript variant X18
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XR_001611551.1
SIO_010081: PCBP3
so part of: PCBP3
location: complement(join(204066..204081,215326..215378,217838..217905,218532..218591,219242..219320,223346..223387,225932..226006,228279..228407,228676..228807,229312..229428,229950..229982,230727..230750,231028..231099,248019..248124,249282..249356,254988..255078,258086..258222))
location: region:204066-258222:-1
so has part: feature:258086-258222:-1:exon
so has part: feature:254988-255078:-1:exon
so has part: feature:249282-249356:-1:exon
so has part: feature:248019-248124:-1:exon
so has part: feature:231028-231099:-1:exon
so has part: feature:230727-230750:-1:exon
so has part: feature:229950-229982:-1:exon
so has part: feature:229312-229428:-1:exon
so has part: feature:228676-228807:-1:exon
so has part: feature:228279-228407:-1:exon
so has part: feature:225932-226006:-1:exon
so has part: feature:223346-223387:-1:exon
so has part: feature:219242-219320:-1:exon
so has part: feature:218532-218591:-1:exon
so has part: feature:217838-217905:-1:exon
so has part: feature:215326-215378:-1:exon
so has part: feature:204066-204081:-1:exon

position:204066:-1
position: 204066
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:258086-258222:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:254988-255078:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:249282-249356:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:248019-248124:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:231028-231099:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:230727-230750:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:229950-229982:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:229312-229428:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:228676-228807:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:228279-228407:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:225932-226006:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:223346-223387:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:219242-219320:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:218532-218591:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:217838-217905:-1:exon

position:217838:-1
position: 217838
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:217905:-1
position: 217905
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:215326-215378:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:204066-204081:-1:exon

PCBP3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59894
gene: PCBP3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: poly(rC)-binding protein 3 isoform X12
translation: MPWTAGLPAVLSMLFSGVARPSQESLWSSRPSCREMESKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFKAFAMIAYKFEEDITNSMSNSTATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYRPKPASTPVIFAGGQAYTIQGQYAIPHPDQLTKLHQLAMQQTPFTPLGQTTPAFPGEKLPLHSSEEAQNLMGQSSGLDASPPASTHELTIPNDLRRP
SIO_010081: PCBP3
subclass of: SO_0000673
so part of: PCBP3
location: complement(join(204067..204081,215326..215378,218532..218591,219242..219320,223346..223387,225932..226006,228279..228407,228676..228807,229312..229428,229950..229982,230727..230750,231028..231099,248019..248120))
location: region:204067-248120:-1
so has part: feature:248019-248120:-1:exon
so has part: feature:231028-231099:-1:exon
so has part: feature:230727-230750:-1:exon
so has part: feature:229950-229982:-1:exon
so has part: feature:229312-229428:-1:exon
so has part: feature:228676-228807:-1:exon
so has part: feature:228279-228407:-1:exon
so has part: feature:225932-226006:-1:exon
so has part: feature:223346-223387:-1:exon
so has part: feature:219242-219320:-1:exon
so has part: feature:218532-218591:-1:exon
so has part: feature:215326-215378:-1:exon
so has part: feature:204067-204081:-1:exon

XP_016155307.1
type: Protein
SIO_000068: ncbiprotein

position:204067:-1
position: 204067
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:248019-248120:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:231028-231099:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:230727-230750:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:229950-229982:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:229312-229428:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:228676-228807:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:228279-228407:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:225932-226006:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:223346-223387:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:219242-219320:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:218532-218591:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:215326-215378:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:204067-204081:-1:exon

PCBP3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59894
gene: PCBP3
product: poly(rC) binding protein 3, transcript variant X10
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 14 samples with support for all annotated introns
transcript id: XM_005048929.1
SIO_010081: PCBP3
subclass of: SO_0000673
so part of: PCBP3
location: complement(join(209759..210702,212394..212563,215326..215378,218532..218591,219242..219317,223346..223387,228279..228407,228676..228807,229312..229428,229950..229982,230727..230750,231028..231099,248019..248124,249282..249356,254988..255078,258086..258222))
location: region:209759-258222:-1
so has part: feature:258086-258222:-1:exon
so has part: feature:254988-255078:-1:exon
so has part: feature:249282-249356:-1:exon
so has part: feature:248019-248124:-1:exon
so has part: feature:231028-231099:-1:exon
so has part: feature:230727-230750:-1:exon
so has part: feature:229950-229982:-1:exon
so has part: feature:229312-229428:-1:exon
so has part: feature:228676-228807:-1:exon
so has part: feature:228279-228407:-1:exon
so has part: feature:223346-223387:-1:exon
so has part: feature:219242-219317:-1:exon
so has part: feature:218532-218591:-1:exon
so has part: feature:215326-215378:-1:exon
so has part: feature:212394-212563:-1:exon
so has part: feature:209759-210702:-1:exon

position:209759:-1
position: 209759
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:258086-258222:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:254988-255078:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:249282-249356:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:248019-248124:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:231028-231099:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:230727-230750:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:229950-229982:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:229312-229428:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:228676-228807:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:228279-228407:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:223346-223387:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:219242-219317:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:218532-218591:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:215326-215378:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:212394-212563:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:209759-210702:-1:exon

position:210702:-1
position: 210702
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

PCBP3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59894
gene: PCBP3
product: poly(rC) binding protein 3, transcript variant X7
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns
transcript id: XM_005048926.1
SIO_010081: PCBP3
subclass of: SO_0000673
so part of: PCBP3
location: complement(join(209759..210702,212394..212563,215326..215378,219242..219317,223346..223387,225932..226006,228279..228407,228676..228807,229312..229428,229950..229982,230727..230750,231028..231099,248019..248124,249282..249356,254988..255078,258086..258222))
location: region:209759-258222:-1
so has part: feature:258086-258222:-1:exon
so has part: feature:254988-255078:-1:exon
so has part: feature:249282-249356:-1:exon
so has part: feature:248019-248124:-1:exon
so has part: feature:231028-231099:-1:exon
so has part: feature:230727-230750:-1:exon
so has part: feature:229950-229982:-1:exon
so has part: feature:229312-229428:-1:exon
so has part: feature:228676-228807:-1:exon
so has part: feature:228279-228407:-1:exon
so has part: feature:225932-226006:-1:exon
so has part: feature:223346-223387:-1:exon
so has part: feature:219242-219317:-1:exon
so has part: feature:215326-215378:-1:exon
so has part: feature:212394-212563:-1:exon
so has part: feature:209759-210702:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:258086-258222:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:254988-255078:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:249282-249356:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:248019-248124:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:231028-231099:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:230727-230750:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:229950-229982:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:229312-229428:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:228676-228807:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:228279-228407:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:225932-226006:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:223346-223387:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:219242-219317:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:215326-215378:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:212394-212563:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:209759-210702:-1:exon

PCBP3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59894
gene: PCBP3
product: poly(rC) binding protein 3, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 13 samples with support for all annotated introns
transcript id: XM_016299812.1
SIO_010081: PCBP3
subclass of: SO_0000673
so part of: PCBP3
location: complement(join(209759..210702,212394..212563,215326..215378,218532..218591,219242..219317,223346..223387,225932..226006,228279..228407,228676..228807,229312..229428,229950..229982,230727..230750,231028..231099,248019..248124,249282..249356,254988..255078,258086..258222))
location: region:209759-258222:-1
so has part: feature:258086-258222:-1:exon
so has part: feature:254988-255078:-1:exon
so has part: feature:249282-249356:-1:exon
so has part: feature:248019-248124:-1:exon
so has part: feature:231028-231099:-1:exon
so has part: feature:230727-230750:-1:exon
so has part: feature:229950-229982:-1:exon
so has part: feature:229312-229428:-1:exon
so has part: feature:228676-228807:-1:exon
so has part: feature:228279-228407:-1:exon
so has part: feature:225932-226006:-1:exon
so has part: feature:223346-223387:-1:exon
so has part: feature:219242-219317:-1:exon
so has part: feature:218532-218591:-1:exon
so has part: feature:215326-215378:-1:exon
so has part: feature:212394-212563:-1:exon
so has part: feature:209759-210702:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:258086-258222:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:254988-255078:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:249282-249356:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:248019-248124:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:231028-231099:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:230727-230750:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:229950-229982:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:229312-229428:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:228676-228807:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:228279-228407:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:225932-226006:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:223346-223387:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:219242-219317:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:218532-218591:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:215326-215378:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:212394-212563:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:209759-210702:-1:exon

PCBP3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59894
gene: PCBP3
product: poly(rC) binding protein 3, transcript variant X17
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns
transcript id: XM_016299822.1
SIO_010081: PCBP3
subclass of: SO_0000673
so part of: PCBP3
location: complement(join(209759..210702,215326..215378,218532..218591,219242..219320,223346..223387,225932..226006,228279..228407,228676..228807,229312..229428,229950..229982,230727..230750,231028..231099,248019..248124,249282..249356,254988..255078,258086..258222))
location: region:209759-258222:-1
so has part: feature:258086-258222:-1:exon
so has part: feature:254988-255078:-1:exon
so has part: feature:249282-249356:-1:exon
so has part: feature:248019-248124:-1:exon
so has part: feature:231028-231099:-1:exon
so has part: feature:230727-230750:-1:exon
so has part: feature:229950-229982:-1:exon
so has part: feature:229312-229428:-1:exon
so has part: feature:228676-228807:-1:exon
so has part: feature:228279-228407:-1:exon
so has part: feature:225932-226006:-1:exon
so has part: feature:223346-223387:-1:exon
so has part: feature:219242-219320:-1:exon
so has part: feature:218532-218591:-1:exon
so has part: feature:215326-215378:-1:exon
so has part: feature:209759-210702:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:258086-258222:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:254988-255078:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:249282-249356:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:248019-248124:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:231028-231099:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:230727-230750:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:229950-229982:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:229312-229428:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:228676-228807:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:228279-228407:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:225932-226006:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:223346-223387:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:219242-219320:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:218532-218591:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:215326-215378:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:209759-210702:-1:exon

PCBP3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59894
gene: PCBP3
product: poly(rC) binding protein 3, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 13 samples with support for all annotated introns
transcript id: XM_005048925.1
SIO_010081: PCBP3
subclass of: SO_0000673
so part of: PCBP3
location: complement(join(209759..210702,212394..212563,215326..215378,218532..218591,219242..219320,223346..223387,225932..226006,228279..228407,228676..228807,229312..229428,229950..229982,230727..230750,231028..231099,248019..248124,249282..249356,254988..255078,258086..258222))
location: region:209759-258222:-1
so has part: feature:258086-258222:-1:exon
so has part: feature:254988-255078:-1:exon
so has part: feature:249282-249356:-1:exon
so has part: feature:248019-248124:-1:exon
so has part: feature:231028-231099:-1:exon
so has part: feature:230727-230750:-1:exon
so has part: feature:229950-229982:-1:exon
so has part: feature:229312-229428:-1:exon
so has part: feature:228676-228807:-1:exon
so has part: feature:228279-228407:-1:exon
so has part: feature:225932-226006:-1:exon
so has part: feature:223346-223387:-1:exon
so has part: feature:219242-219320:-1:exon
so has part: feature:218532-218591:-1:exon
so has part: feature:215326-215378:-1:exon
so has part: feature:212394-212563:-1:exon
so has part: feature:209759-210702:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:258086-258222:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:254988-255078:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:249282-249356:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:248019-248124:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:231028-231099:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:230727-230750:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:229950-229982:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:229312-229428:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:228676-228807:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:228279-228407:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:225932-226006:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:223346-223387:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:219242-219320:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:218532-218591:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:215326-215378:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:212394-212563:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:209759-210702:-1:exon

PCBP3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59894
gene: PCBP3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: poly(rC)-binding protein 3 isoform X10
translation: MPWTAGLPAVLSMLFSGVARPSQESLWSSRPSCREMESKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFKAFAMIAYKFEEDITNSMSNSTATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAIIQCVKQICVVMLEAYTIQGQYAIPHPDLTKLHQLAMQQTPFTPLGQTTPAFPGEKLPLHSSEEAQNLMGQSSGLDASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINARLTSEVTGMGAI
SIO_010081: PCBP3
subclass of: SO_0000673
so part of: PCBP3
location: complement(join(210666..210702,212394..212563,215326..215378,218532..218591,219242..219317,223346..223387,228279..228407,228676..228807,229312..229428,229950..229982,230727..230750,231028..231099,248019..248120))
location: region:210666-248120:-1
so has part: feature:248019-248120:-1:exon
so has part: feature:231028-231099:-1:exon
so has part: feature:230727-230750:-1:exon
so has part: feature:229950-229982:-1:exon
so has part: feature:229312-229428:-1:exon
so has part: feature:228676-228807:-1:exon
so has part: feature:228279-228407:-1:exon
so has part: feature:223346-223387:-1:exon
so has part: feature:219242-219317:-1:exon
so has part: feature:218532-218591:-1:exon
so has part: feature:215326-215378:-1:exon
so has part: feature:212394-212563:-1:exon
so has part: feature:210666-210702:-1:exon

XP_005048986.1
type: Protein
SIO_000068: ncbiprotein

position:210666:-1
position: 210666
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:248019-248120:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:231028-231099:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:230727-230750:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:229950-229982:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:229312-229428:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:228676-228807:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:228279-228407:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:223346-223387:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:219242-219317:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:218532-218591:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:215326-215378:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:212394-212563:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:210666-210702:-1:exon

PCBP3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59894
gene: PCBP3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: poly(rC)-binding protein 3 isoform X7
translation: MPWTAGLPAVLSMLFSGVARPSQESLWSSRPSCREMESKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFKAFAMIAYKFEEDITNSMSNSTATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYRPKPASTPVIFAGGQAYTIQGQYAIPHPDLTKLHQLAMQQTPFTPLGQTTPAFPGLDASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINARLTSEVTGMGAI
SIO_010081: PCBP3
subclass of: SO_0000673
so part of: PCBP3
location: complement(join(210666..210702,212394..212563,215326..215378,219242..219317,223346..223387,225932..226006,228279..228407,228676..228807,229312..229428,229950..229982,230727..230750,231028..231099,248019..248120))
location: region:210666-248120:-1
so has part: feature:248019-248120:-1:exon
so has part: feature:231028-231099:-1:exon
so has part: feature:230727-230750:-1:exon
so has part: feature:229950-229982:-1:exon
so has part: feature:229312-229428:-1:exon
so has part: feature:228676-228807:-1:exon
so has part: feature:228279-228407:-1:exon
so has part: feature:225932-226006:-1:exon
so has part: feature:223346-223387:-1:exon
so has part: feature:219242-219317:-1:exon
so has part: feature:215326-215378:-1:exon
so has part: feature:212394-212563:-1:exon
so has part: feature:210666-210702:-1:exon

XP_005048983.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:248019-248120:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:231028-231099:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:230727-230750:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:229950-229982:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:229312-229428:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:228676-228807:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:228279-228407:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:225932-226006:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:223346-223387:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:219242-219317:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:215326-215378:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:212394-212563:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:210666-210702:-1:exon

PCBP3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59894
gene: PCBP3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: poly(rC)-binding protein 3 isoform X4
translation: MPWTAGLPAVLSMLFSGVARPSQESLWSSRPSCREMESKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFKAFAMIAYKFEEDITNSMSNSTATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYRPKPASTPVIFAGGQAYTIQGQYAIPHPDLTKLHQLAMQQTPFTPLGQTTPAFPGEKLPLHSSEEAQNLMGQSSGLDASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINARLTSEVTGMGAI
SIO_010081: PCBP3
subclass of: SO_0000673
so part of: PCBP3
location: complement(join(210666..210702,212394..212563,215326..215378,218532..218591,219242..219317,223346..223387,225932..226006,228279..228407,228676..228807,229312..229428,229950..229982,230727..230750,231028..231099,248019..248120))
location: region:210666-248120:-1
so has part: feature:248019-248120:-1:exon
so has part: feature:231028-231099:-1:exon
so has part: feature:230727-230750:-1:exon
so has part: feature:229950-229982:-1:exon
so has part: feature:229312-229428:-1:exon
so has part: feature:228676-228807:-1:exon
so has part: feature:228279-228407:-1:exon
so has part: feature:225932-226006:-1:exon
so has part: feature:223346-223387:-1:exon
so has part: feature:219242-219317:-1:exon
so has part: feature:218532-218591:-1:exon
so has part: feature:215326-215378:-1:exon
so has part: feature:212394-212563:-1:exon
so has part: feature:210666-210702:-1:exon

XP_016155298.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:248019-248120:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:231028-231099:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:230727-230750:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:229950-229982:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:229312-229428:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:228676-228807:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:228279-228407:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:225932-226006:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:223346-223387:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:219242-219317:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:218532-218591:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:215326-215378:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:212394-212563:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:210666-210702:-1:exon

PCBP3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59894
gene: PCBP3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: poly(rC)-binding protein 3 isoform X3
translation: MPWTAGLPAVLSMLFSGVARPSQESLWSSRPSCREMESKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFKAFAMIAYKFEEDITNSMSNSTATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYRPKPASTPVIFAGGQAYTIQGQYAIPHPDQLTKLHQLAMQQTPFTPLGQTTPAFPGEKLPLHSSEEAQNLMGQSSGLDASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINARLTSEVTGMGAI
SIO_010081: PCBP3
subclass of: SO_0000673
so part of: PCBP3
location: complement(join(210666..210702,212394..212563,215326..215378,218532..218591,219242..219320,223346..223387,225932..226006,228279..228407,228676..228807,229312..229428,229950..229982,230727..230750,231028..231099,248019..248120))
location: region:210666-248120:-1
so has part: feature:248019-248120:-1:exon
so has part: feature:231028-231099:-1:exon
so has part: feature:230727-230750:-1:exon
so has part: feature:229950-229982:-1:exon
so has part: feature:229312-229428:-1:exon
so has part: feature:228676-228807:-1:exon
so has part: feature:228279-228407:-1:exon
so has part: feature:225932-226006:-1:exon
so has part: feature:223346-223387:-1:exon
so has part: feature:219242-219320:-1:exon
so has part: feature:218532-218591:-1:exon
so has part: feature:215326-215378:-1:exon
so has part: feature:212394-212563:-1:exon
so has part: feature:210666-210702:-1:exon

XP_005048982.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:248019-248120:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:231028-231099:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:230727-230750:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:229950-229982:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:229312-229428:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:228676-228807:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:228279-228407:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:225932-226006:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:223346-223387:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:219242-219320:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:218532-218591:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:215326-215378:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:212394-212563:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:210666-210702:-1:exon

PCBP3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59894
gene: PCBP3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: poly(rC)-binding protein 3 isoform X13
translation: MPWTAGLPAVLSMLFSGVARPSQESLWSSRPSCREMESKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFKAFAMIAYKFEEDITNSMSNSTATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYRPKPASTPVIFAGGQAYTIQGQYAIPHPDQLTKLHQLAMQQTPFTPLGQTTPAFPGEKLPLHSSEEAQNLMGQSSGLDASPPASTHELTIPNDADV
SIO_010081: PCBP3
subclass of: SO_0000673
so part of: PCBP3
location: complement(join(210691..210702,215326..215378,218532..218591,219242..219320,223346..223387,225932..226006,228279..228407,228676..228807,229312..229428,229950..229982,230727..230750,231028..231099,248019..248120))
location: region:210691-248120:-1
so has part: feature:248019-248120:-1:exon
so has part: feature:231028-231099:-1:exon
so has part: feature:230727-230750:-1:exon
so has part: feature:229950-229982:-1:exon
so has part: feature:229312-229428:-1:exon
so has part: feature:228676-228807:-1:exon
so has part: feature:228279-228407:-1:exon
so has part: feature:225932-226006:-1:exon
so has part: feature:223346-223387:-1:exon
so has part: feature:219242-219320:-1:exon
so has part: feature:218532-218591:-1:exon
so has part: feature:215326-215378:-1:exon
so has part: feature:210691-210702:-1:exon

XP_016155308.1
type: Protein
SIO_000068: ncbiprotein

position:210691:-1
position: 210691
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:248019-248120:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:231028-231099:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:230727-230750:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:229950-229982:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:229312-229428:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:228676-228807:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:228279-228407:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:225932-226006:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:223346-223387:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:219242-219320:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:218532-218591:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:215326-215378:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:210691-210702:-1:exon

SLC19A1
type: Gene
subclass of: SO_0000704
RO_0002162: 59894
gene: SLC19A1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 259720..266301
location: region:259720-266301:1
so has part: feature:259720-266301:1:exon
subclass of: SO_0000010

101818308
type: Gene
SIO_000068: ncbigene

position:259720:1
position: 259720
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:266301:1
position: 266301
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:259720-266301:1:exon

SLC19A1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59894
gene: SLC19A1
product: solute carrier family 19 member 1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 97% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_005048920.2
SIO_010081: SLC19A1
subclass of: SO_0000673
so part of: SLC19A1
location: join(259720..259859,262386..262684,263386..263804,263895..264017,264710..264927,265182..265374,265459..265600,265700..266301)
location: region:259720-266301:1
so has part: feature:259720-259859:1:exon
so has part: feature:262386-262684:1:exon
so has part: feature:263386-263804:1:exon
so has part: feature:263895-264017:1:exon
so has part: feature:264710-264927:1:exon
so has part: feature:265182-265374:1:exon
so has part: feature:265459-265600:1:exon
so has part: feature:265700-266301:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:259720-259859:1:exon

position:259859:1
position: 259859
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:262386-262684:1:exon

position:262386:1
position: 262386
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:262684:1
position: 262684
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:263386-263804:1:exon

position:263386:1
position: 263386
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:263804:1
position: 263804
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:263895-264017:1:exon

position:263895:1
position: 263895
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:264017:1
position: 264017
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:264710-264927:1:exon

position:264710:1
position: 264710
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:264927:1
position: 264927
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:265182-265374:1:exon

position:265182:1
position: 265182
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:265374:1
position: 265374
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:265459-265600:1:exon

position:265459:1
position: 265459
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:265600:1
position: 265600
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:265700-266301:1:exon

position:265700:1
position: 265700
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

SLC19A1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59894
gene: SLC19A1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: folate transporter 1
translation: MAPGIMPLSCCRAVPKGDGAKKPASETMPDQRWKLQVFYLCFYGFMTQIRPGESFITPYLLGTDKNFTKAEVTNMITPVLSYSYMAVLVPIFLLTDYLRYKPVLVLQSLSHISIWLLLVLGTSVLAMQLMEFFYGITMAARIAYSSYIFSLVAPSRYQRMASYSRSAVLLGVFTSSVLGQLCVSLGGVRFLTLNYVSLGFVSFGLILTLFLERPRRSLFFNRPRGAGDATVPTELERISGGHGGGGTRGWREGWRDMVLCRMLRELGALARQPQLRLWSLWWVFNSAGYYLVLYYAHILWNEISPTTDNRRVYNGGVDAASTLLGAIASFAAGYVKIRWTLWSELVIGVVTAFQAGLLLLMNSTTNIWMCYVAYILFRGSHQFLVPIAIFQIATSLSKELCALVFGVNTFFATVLKTIITIIVADKGGLGLSVHPQFYVYFGYFALLAVVYLLAAIGVGVQHSHRRQPVELALAKEPCQAPVEIPAQEKSPEAGTMRA
SIO_010081: SLC19A1
subclass of: SO_0000673
so part of: SLC19A1
location: join(262472..262684,263386..263804,263895..264017,264710..264927,265182..265374,265459..265600,265700..265888)
location: region:262472-265888:1
so has part: feature:262472-262684:1:exon
so has part: feature:263386-263804:1:exon
so has part: feature:263895-264017:1:exon
so has part: feature:264710-264927:1:exon
so has part: feature:265182-265374:1:exon
so has part: feature:265459-265600:1:exon
so has part: feature:265700-265888:1:exon

XP_005048977.1
type: Protein
SIO_000068: ncbiprotein

position:262472:1
position: 262472
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:265888:1
position: 265888
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:262472-262684:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:263386-263804:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:263895-264017:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:264710-264927:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:265182-265374:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:265459-265600:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:265700-265888:1:exon

COL18A1
type: Gene
subclass of: SO_0000704
RO_0002162: 59894
gene: COL18A1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(266396..288174)
location: region:266396-288174:-1
so has part: feature:266396-288174:-1:exon
subclass of: SO_0000010

101818519
type: Gene
SIO_000068: ncbigene

position:266396:-1
position: 266396
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:288174:-1
position: 288174
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:266396-288174:-1:exon

COL18A1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59894
gene: COL18A1
product: collagen type XVIII alpha 1, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 14 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XM_005048921.2
SIO_010081: COL18A1
subclass of: SO_0000673
so part of: COL18A1
location: complement(join(266396..267543,267626..267741,268083..268280,268364..268624,270233..270268,270445..270573,270653..270726,270882..271026,271122..271244,271339..271382,271472..271534,271665..271698,271892..271963,272148..272213,272426..272479,272597..272632,272726..272800,272943..273005,273164..273190,273297..273326,273466..273555,273626..273661,274014..274076,274198..274242,274336..274362,274474..274536,274618..274758,275689..275733,275911..275973,276095..276244,276322..276375,276515..276601,276682..276744,276835..276861,276953..277123,277223..277249,277337..277440,277538..277676,277857..277916,278008..278088,280727..281271,284951..288174))
location: region:266396-288174:-1
so has part: feature:284951-288174:-1:exon
so has part: feature:280727-281271:-1:exon
so has part: feature:278008-278088:-1:exon
so has part: feature:277857-277916:-1:exon
so has part: feature:277538-277676:-1:exon
so has part: feature:277337-277440:-1:exon
so has part: feature:277223-277249:-1:exon
so has part: feature:276953-277123:-1:exon
so has part: feature:276835-276861:-1:exon
so has part: feature:276682-276744:-1:exon
so has part: feature:276515-276601:-1:exon
so has part: feature:276322-276375:-1:exon
so has part: feature:276095-276244:-1:exon
so has part: feature:275911-275973:-1:exon
so has part: feature:275689-275733:-1:exon
so has part: feature:274618-274758:-1:exon
so has part: feature:274474-274536:-1:exon
so has part: feature:274336-274362:-1:exon
so has part: feature:274198-274242:-1:exon
so has part: feature:274014-274076:-1:exon
so has part: feature:273626-273661:-1:exon
so has part: feature:273466-273555:-1:exon
so has part: feature:273297-273326:-1:exon
so has part: feature:273164-273190:-1:exon
so has part: feature:272943-273005:-1:exon
so has part: feature:272726-272800:-1:exon
so has part: feature:272597-272632:-1:exon
so has part: feature:272426-272479:-1:exon
so has part: feature:272148-272213:-1:exon
so has part: feature:271892-271963:-1:exon
so has part: feature:271665-271698:-1:exon
so has part: feature:271472-271534:-1:exon
so has part: feature:271339-271382:-1:exon
so has part: feature:271122-271244:-1:exon
so has part: feature:270882-271026:-1:exon
so has part: feature:270653-270726:-1:exon
so has part: feature:270445-270573:-1:exon
so has part: feature:270233-270268:-1:exon
so has part: feature:268364-268624:-1:exon
so has part: feature:268083-268280:-1:exon
so has part: feature:267626-267741:-1:exon
so has part: feature:266396-267543:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:284951-288174:-1:exon

position:284951:-1
position: 284951
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:280727-281271:-1:exon

position:280727:-1
position: 280727
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:281271:-1
position: 281271
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:278008-278088:-1:exon

position:278008:-1
position: 278008
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:278088:-1
position: 278088
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:277857-277916:-1:exon

position:277857:-1
position: 277857
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:277916:-1
position: 277916
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:277538-277676:-1:exon

position:277538:-1
position: 277538
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:277676:-1
position: 277676
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:277337-277440:-1:exon

position:277337:-1
position: 277337
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:277440:-1
position: 277440
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:277223-277249:-1:exon

position:277223:-1
position: 277223
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:277249:-1
position: 277249
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:276953-277123:-1:exon

position:276953:-1
position: 276953
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:277123:-1
position: 277123
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:276835-276861:-1:exon

position:276835:-1
position: 276835
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:276861:-1
position: 276861
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:276682-276744:-1:exon

position:276682:-1
position: 276682
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:276744:-1
position: 276744
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:276515-276601:-1:exon

position:276515:-1
position: 276515
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:276601:-1
position: 276601
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:276322-276375:-1:exon

position:276322:-1
position: 276322
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:276375:-1
position: 276375
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:276095-276244:-1:exon

position:276095:-1
position: 276095
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:276244:-1
position: 276244
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:275911-275973:-1:exon

position:275911:-1
position: 275911
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:275973:-1
position: 275973
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:275689-275733:-1:exon

position:275689:-1
position: 275689
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:275733:-1
position: 275733
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:274618-274758:-1:exon

position:274618:-1
position: 274618
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:274758:-1
position: 274758
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:274474-274536:-1:exon

position:274474:-1
position: 274474
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:274536:-1
position: 274536
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:274336-274362:-1:exon

position:274336:-1
position: 274336
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:274362:-1
position: 274362
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:274198-274242:-1:exon

position:274198:-1
position: 274198
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:274242:-1
position: 274242
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:274014-274076:-1:exon

position:274014:-1
position: 274014
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:274076:-1
position: 274076
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:273626-273661:-1:exon

position:273626:-1
position: 273626
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:273661:-1
position: 273661
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 22
SIO_000628: feature:273466-273555:-1:exon

position:273466:-1
position: 273466
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:273555:-1
position: 273555
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 23
SIO_000628: feature:273297-273326:-1:exon

position:273297:-1
position: 273297
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:273326:-1
position: 273326
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 24
SIO_000628: feature:273164-273190:-1:exon

position:273164:-1
position: 273164
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:273190:-1
position: 273190
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 25
SIO_000628: feature:272943-273005:-1:exon

position:272943:-1
position: 272943
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:273005:-1
position: 273005
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 26
SIO_000628: feature:272726-272800:-1:exon

position:272726:-1
position: 272726
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:272800:-1
position: 272800
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 27
SIO_000628: feature:272597-272632:-1:exon

position:272597:-1
position: 272597
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:272632:-1
position: 272632
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 28
SIO_000628: feature:272426-272479:-1:exon

position:272426:-1
position: 272426
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:272479:-1
position: 272479
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 29
SIO_000628: feature:272148-272213:-1:exon

position:272148:-1
position: 272148
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:272213:-1
position: 272213
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 30
SIO_000628: feature:271892-271963:-1:exon

position:271892:-1
position: 271892
reference: sequence
type: ReverseStrandPosition
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position:271963:-1
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reference: sequence
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urn:…
SIO_000300: 31
SIO_000628: feature:271665-271698:-1:exon

position:271665:-1
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reference: sequence
type: ReverseStrandPosition
type: ExactPosition

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reference: sequence
type: ReverseStrandPosition
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urn:…
SIO_000300: 32
SIO_000628: feature:271472-271534:-1:exon

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reference: sequence
type: ReverseStrandPosition
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position:271534:-1
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reference: sequence
type: ReverseStrandPosition
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urn:…
SIO_000300: 33
SIO_000628: feature:271339-271382:-1:exon

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reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:271382:-1
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reference: sequence
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urn:…
SIO_000300: 34
SIO_000628: feature:271122-271244:-1:exon

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reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:271244:-1
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reference: sequence
type: ReverseStrandPosition
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urn:…
SIO_000300: 35
SIO_000628: feature:270882-271026:-1:exon

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reference: sequence
type: ReverseStrandPosition
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position:271026:-1
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reference: sequence
type: ReverseStrandPosition
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urn:…
SIO_000300: 36
SIO_000628: feature:270653-270726:-1:exon

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reference: sequence
type: ReverseStrandPosition
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position:270726:-1
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reference: sequence
type: ReverseStrandPosition
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urn:…
SIO_000300: 37
SIO_000628: feature:270445-270573:-1:exon

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reference: sequence
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type: ExactPosition

position:270573:-1
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reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 38
SIO_000628: feature:270233-270268:-1:exon

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reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:270268:-1
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reference: sequence
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type: ExactPosition

urn:…
SIO_000300: 39
SIO_000628: feature:268364-268624:-1:exon

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reference: sequence
type: ReverseStrandPosition
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position:268624:-1
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reference: sequence
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urn:…
SIO_000300: 40
SIO_000628: feature:268083-268280:-1:exon

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reference: sequence
type: ReverseStrandPosition
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position:268280:-1
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reference: sequence
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urn:…
SIO_000300: 41
SIO_000628: feature:267626-267741:-1:exon

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reference: sequence
type: ReverseStrandPosition
type: ExactPosition

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reference: sequence
type: ReverseStrandPosition
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urn:…
SIO_000300: 42
SIO_000628: feature:266396-267543:-1:exon

position:267543:-1
position: 267543
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

COL18A1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59894
gene: COL18A1
product: collagen type XVIII alpha 1, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XM_005048922.2
SIO_010081: COL18A1
subclass of: SO_0000673
so part of: COL18A1
location: complement(join(266396..267543,267626..267741,268083..268280,268364..268624,270233..270268,270445..270573,270653..270726,270882..271026,271122..271244,271339..271382,271472..271534,271665..271698,271892..271963,272148..272213,272426..272479,272597..272632,272726..272800,272943..273005,273164..273190,273297..273326,273466..273555,273626..273661,274014..274076,274198..274242,274336..274362,274474..274536,274618..274758,275689..275733,275911..275973,276095..276244,276322..276375,276515..276601,276682..276744,276835..276861,276953..277123,277223..277249,277337..277440,277538..277676,277857..277916,278008..278088,280727..281271,285641..288172))
location: region:266396-288172:-1
so has part: feature:285641-288172:-1:exon
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so has part: feature:273297-273326:-1:exon
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so has part: feature:272148-272213:-1:exon
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so has part: feature:271472-271534:-1:exon
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so has part: feature:270882-271026:-1:exon
so has part: feature:270653-270726:-1:exon
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so has part: feature:268083-268280:-1:exon
so has part: feature:267626-267741:-1:exon
so has part: feature:266396-267543:-1:exon

position:288172:-1
position: 288172
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:285641-288172:-1:exon

position:285641:-1
position: 285641
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:280727-281271:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:278008-278088:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:277857-277916:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:277538-277676:-1:exon

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SIO_000300: 6
SIO_000628: feature:277337-277440:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:277223-277249:-1:exon

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SIO_000300: 8
SIO_000628: feature:276953-277123:-1:exon

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SIO_000300: 9
SIO_000628: feature:276835-276861:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:276682-276744:-1:exon

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SIO_000300: 11
SIO_000628: feature:276515-276601:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:276322-276375:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:276095-276244:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:275911-275973:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:275689-275733:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:274618-274758:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:274474-274536:-1:exon

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SIO_000300: 18
SIO_000628: feature:274336-274362:-1:exon

urn:…
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SIO_000628: feature:274198-274242:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:274014-274076:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:273626-273661:-1:exon

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SIO_000300: 22
SIO_000628: feature:273466-273555:-1:exon

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SIO_000300: 23
SIO_000628: feature:273297-273326:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:273164-273190:-1:exon

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SIO_000300: 25
SIO_000628: feature:272943-273005:-1:exon

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SIO_000300: 26
SIO_000628: feature:272726-272800:-1:exon

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SIO_000300: 27
SIO_000628: feature:272597-272632:-1:exon

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SIO_000300: 28
SIO_000628: feature:272426-272479:-1:exon

urn:…
SIO_000300: 29
SIO_000628: feature:272148-272213:-1:exon

urn:…
SIO_000300: 30
SIO_000628: feature:271892-271963:-1:exon

urn:…
SIO_000300: 31
SIO_000628: feature:271665-271698:-1:exon

urn:…
SIO_000300: 32
SIO_000628: feature:271472-271534:-1:exon

urn:…
SIO_000300: 33
SIO_000628: feature:271339-271382:-1:exon

urn:…
SIO_000300: 34
SIO_000628: feature:271122-271244:-1:exon

urn:…
SIO_000300: 35
SIO_000628: feature:270882-271026:-1:exon

urn:…
SIO_000300: 36
SIO_000628: feature:270653-270726:-1:exon

urn:…
SIO_000300: 37
SIO_000628: feature:270445-270573:-1:exon

urn:…
SIO_000300: 38
SIO_000628: feature:270233-270268:-1:exon

urn:…
SIO_000300: 39
SIO_000628: feature:268364-268624:-1:exon

urn:…
SIO_000300: 40
SIO_000628: feature:268083-268280:-1:exon

urn:…
SIO_000300: 41
SIO_000628: feature:267626-267741:-1:exon

urn:…
SIO_000300: 42
SIO_000628: feature:266396-267543:-1:exon

COL18A1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59894
gene: COL18A1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: collagen alpha-1(XVIII) chain isoform X2
translation: MAPPRLGFLLLLACCFSCSEPQLLDWVWDSAKTTGSPAAPGKGIPASEPPTSAAAPAPSPSPVRWGGEAAGNVTTPRRQEPDPATAAPVGEGTTEQWDRSATGLLESTARASIAPPHIMSPAPGQQVASSPRNKPQLLGTGTPKDLQLLGSGTTEDPQLLGSGSTEDLQLLRMKTTKELQFLGSVSPTEHLGTGTTEDLQLLGSGTTENPQLLGSGTSKDLQLLGSGTTEDLQLLGLGTTEDLQLLGMVSTADLGSVSPKELLGTGTTENLQLLGSGTTENPQLLGSGTSKDLQLLGSGTTEDLQLLGLGTTEDLQLLGMVSTADLGSVSPKELLGTGTTENLQLLGSGTTENPQLLGSGTSKDLQLLGSGTTEDLQLLGLGTTEDLQLLGMVSTADLGSVSPKELLGTGTTENLQLLGSGTTENPQLLGSGTSKDLQLLGSGTTEDLQLLGLGTTEDLQLLGMVSTADLGSVSPKELLGTGTTENLQLLGSGTTENPQLLGSGTSKDLQLLGSGTTEDLQLLGLGTTEDLQLLGMVSTADLGSVSPKELLGTGTTENLQLLGSGTTENPQLLGSGTSKDLQLLGSGTTEDLQLLGLGTTEDLQLLGMVSTADLGSVSPKELLGTGTTENLQLLGSGTTENPQLLGSGTSKDLQLLGSGTTEDLQLLVMERTKDPQLLRTTKDPQLLGQGTTENLQLVAMRSTEETQLPRTVTSERPELLGNTENPQLVRMVTTENPEFLGTGTPTAIETQVSLQRPAGPQTESLSAEVSLLELIGDPLTEEIHRIYGPDNNPGYVFGPNANTGQVARYHLPSPFYRDFSLLFHIQPTTPRAGVLFAVTDSSQSIIYVGVKLSELRAGQQQIIFYYTEPGSPSSYPAATFTVPTLLNQWTRFAISVEEEEVILYLDCEEHERVRFERSPDEMELEEGSGLFVAQAGGADPDKYQGVIADLKLRGDPRAAERQCEEEEDDAEVSGDFGSGMEGGQQPSGKVEAVPGLVDAVPVTSPPVAGGSGPRSGGGSPQQAERTRAEERLRVSTGDTSRKGEKGEKGERGLKGDSGTSGIIGPGSVKGQKGEKGDLGVKGSAGFGYPGSKGQKGEPGDPGPPGTHSRHGDGLVVEQVTGPPGPPGKDGAPGRDGEPGDPGEDGKPGEMGPPGFPGMPGEPGLKGEKGDPGVGPRGPPGPPGPPGPPAPPSKNDKLTFIDMEGSGFGGDLESLRGPRGPPGPPGPPGVPGLPGEPGRFGMNRTDLPGPPGLPGRDGIPGPQGPVGPQGPPGRDGEAGQPGPKGEQGDVGDLGLPGLPGPKGSKGETGPAGPPGEMGLAGLPGPIGPRGQPGPPGPPGPPGPGYEAGFSDMEGSGLPFTPGPPGPEGPQGVPGLPGVKGEVGSPGQPGLPGPKGDAGMPGVDGRPGLEGFPGPQGPKGDKGSTGEKGERGQDGVGLPGPPGPPGPPGQIITVSSEDKSLLAFPGPEGRPGHAGFPGPVGPKGDQGSTGLQGAPGLKGEKGEPGVIISPDGTVVTAKVKGEKGEPGLRGPVGPSGPPGRAGMKGEIGFPGRPGRPGMNGLKGEKGDPADVLGSRGLPGPPGPPGPPGPPGSIVYNNGNTFSDSSHPAFPGFHQFQGQKGEKGDTGPPGPPGQFPYDASHFGASMRGDKGDAGPKGEKGEPGSTPLYSPGVSGLPGPPGPQGYPGLPGPKGDSIVGPPGPPGPQGPPGIGYEGRQGPPGPPGPPGPPSFPGPHRQAVSIPGPPGPPGPPGPPGISGMSLGLRAVPTYQAMLSAAHELPEGSLVFLTDRQELYVRLRGGFRRVLLEEQNLIPSSALDNEVYDKPPTLHYAGPQPRGPLHPLRNHVPPATARPWRGDEVVANQHRLPEQPLLHHQHELINGYYVQRRPDPAPVAAHVHQDFQPALHLVALNTPLSGSMRGIRGADFQCFQQARQVGLAGTFRAFLSSRLQDLYSIVRRADRAAVPIVNLQDEVLFNNWEALFTGSGAPLRAGTRILSFDGRDVL…
SIO_010081: COL18A1
subclass of: SO_0000673
so part of: COL18A1
location: complement(join(267330..267543,267626..267741,268083..268280,268364..268624,270233..270268,270445..270573,270653..270726,270882..271026,271122..271244,271339..271382,271472..271534,271665..271698,271892..271963,272148..272213,272426..272479,272597..272632,272726..272800,272943..273005,273164..273190,273297..273326,273466..273555,273626..273661,274014..274076,274198..274242,274336..274362,274474..274536,274618..274758,275689..275733,275911..275973,276095..276244,276322..276375,276515..276601,276682..276744,276835..276861,276953..277123,277223..277249,277337..277440,277538..277676,277857..277916,278008..278088,280727..281271,285641..287927))
location: region:267330-287927:-1
so has part: feature:285641-287927:-1:exon
so has part: feature:280727-281271:-1:exon
so has part: feature:278008-278088:-1:exon
so has part: feature:277857-277916:-1:exon
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so has part: feature:272148-272213:-1:exon
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so has part: feature:271665-271698:-1:exon
so has part: feature:271472-271534:-1:exon
so has part: feature:271339-271382:-1:exon
so has part: feature:271122-271244:-1:exon
so has part: feature:270882-271026:-1:exon
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so has part: feature:267626-267741:-1:exon
so has part: feature:267330-267543:-1:exon

XP_005048979.1
type: Protein
SIO_000068: ncbiprotein

position:267330:-1
position: 267330
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:287927:-1
position: 287927
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:285641-287927:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:280727-281271:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:278008-278088:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:277857-277916:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:277538-277676:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:277337-277440:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:277223-277249:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:276953-277123:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:276835-276861:-1:exon

urn:…
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SIO_000628: feature:276682-276744:-1:exon

urn:…
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SIO_000628: feature:276515-276601:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:276322-276375:-1:exon

urn:…
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SIO_000628: feature:275911-275973:-1:exon

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SIO_000628: feature:275689-275733:-1:exon

urn:…
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SIO_000628: feature:274618-274758:-1:exon

urn:…
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SIO_000628: feature:274474-274536:-1:exon

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SIO_000628: feature:274198-274242:-1:exon

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urn:…
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SIO_000628: feature:273626-273661:-1:exon

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SIO_000628: feature:273297-273326:-1:exon

urn:…
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urn:…
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SIO_000628: feature:272726-272800:-1:exon

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urn:…
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SIO_000628: feature:271892-271963:-1:exon

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SIO_000628: feature:271665-271698:-1:exon

urn:…
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SIO_000628: feature:271472-271534:-1:exon

urn:…
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SIO_000628: feature:271339-271382:-1:exon

urn:…
SIO_000300: 34
SIO_000628: feature:271122-271244:-1:exon

urn:…
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SIO_000628: feature:270882-271026:-1:exon

urn:…
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SIO_000628: feature:270653-270726:-1:exon

urn:…
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SIO_000628: feature:270445-270573:-1:exon

urn:…
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SIO_000628: feature:270233-270268:-1:exon

urn:…
SIO_000300: 39
SIO_000628: feature:268364-268624:-1:exon

urn:…
SIO_000300: 40
SIO_000628: feature:268083-268280:-1:exon

urn:…
SIO_000300: 41
SIO_000628: feature:267626-267741:-1:exon

urn:…
SIO_000300: 42
SIO_000628: feature:267330-267543:-1:exon

COL18A1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59894
gene: COL18A1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: collagen alpha-1(XVIII) chain isoform X1
translation: MAPPRLGFLLLLACCFSCSEPQLLDWVWDSAKTTGSPAAPGKGIPASEPPTSAAAPAPSPSPVRWGGEAAGNVTTPRRQEPDPATAAPVGEGTTEQWDRSATGLLESTARASIAPPHIMSPAPGQQVASSPRNKPQLLGTGTPKDLQLLGSGTTEDPQLLGSGSTEDLQLLRMKTTKELQFLGSVSPTEHLGTGTTEDLQLLGSGTTENPQLLGSGTSKDLQLLGSGTTEDLQLLGLGTTEDLQLLGMVSTADLGSVSPKELLGTGTTENLQLLGSGTTENPQLLGSGTSKDLQLLGSGTTEDLQLLGLGTTEDLQLLGMVSTADLGSVSPKELLGTGTTENLQLLGSGTTENPQLLGSGTSKDLQLLGSGTTEDLQLLGLGTTEDLQLLGMVSTADLGSVSPKELLGTGTTENLQLLGSGTTENPQLLGSGTSKDLQLLGSGTTEDLQLLGLGTTEDLQLLGMVSTADLGSVSPKELLGTGTTENLQLLGSGTTENPQLLGSGTSKDLQLLGSGTTEDLQLLGLGTTEDLQLLGMVSTADLGSVSPKELLGTGTTENLQLLGSGTTENPQLLGSGTSKDLQLLGSGTTEDLQLLGLGTTEDLQLLGMVSTADLGSVSPKELLGTGTTENLQLLGSGTTENPQLLGSGTSKDLQLLGSGTTEDLQLLVMERTKDPQLLRTTKDPQLLGQGTTENLQLVAMRSTEETQLPRTVTSERPELLGNTENPQLVRMVTTENPEFLGTGTPTAIETQVSLQRPAGPQTGSAPFPFSPGDSTHERAVPFQDPLAQPPHHLHGASPNLWHGTGHLRLALASRNGSQSPPWPDQRVDKGVDPPAAYSSVPLDFDLLTATMQLYGSGGTGLSSFFPGLMPIAGRCQPIPTHLPVCSVLGTSHVRLPNYLRHSSEEEIQAALHEWEGLLKSRCHRYLEWFLCLLLLPGCSPSVPVTPPPCQGFCEAVRDLCWTHLAGGRLPLPCDALPEEDEGVSCVFINASAESLSAEVSLLELIGDPLTEEIHRIYGPDNNPGYVFGPNANTGQVARYHLPSPFYRDFSLLFHIQPTTPRAGVLFAVTDSSQSIIYVGVKLSELRAGQQQIIFYYTEPGSPSSYPAATFTVPTLLNQWTRFAISVEEEEVILYLDCEEHERVRFERSPDEMELEEGSGLFVAQAGGADPDKYQGVIADLKLRGDPRAAERQCEEEEDDAEVSGDFGSGMEGGQQPSGKVEAVPGLVDAVPVTSPPVAGGSGPRSGGGSPQQAERTRAEERLRVSTGDTSRKGEKGEKGERGLKGDSGTSGIIGPGSVKGQKGEKGDLGVKGSAGFGYPGSKGQKGEPGDPGPPGTHSRHGDGLVVEQVTGPPGPPGKDGAPGRDGEPGDPGEDGKPGEMGPPGFPGMPGEPGLKGEKGDPGVGPRGPPGPPGPPGPPAPPSKNDKLTFIDMEGSGFGGDLESLRGPRGPPGPPGPPGVPGLPGEPGRFGMNRTDLPGPPGLPGRDGIPGPQGPVGPQGPPGRDGEAGQPGPKGEQGDVGDLGLPGLPGPKGSKGETGPAGPPGEMGLAGLPGPIGPRGQPGPPGPPGPPGPGYEAGFSDMEGSGLPFTPGPPGPEGPQGVPGLPGVKGEVGSPGQPGLPGPKGDAGMPGVDGRPGLEGFPGPQGPKGDKGSTGEKGERGQDGVGLPGPPGPPGPPGQIITVSSEDKSLLAFPGPEGRPGHAGFPGPVGPKGDQGSTGLQGAPGLKGEKGEPGVIISPDGTVVTAKVKGEKGEPGLRGPVGPSGPPGRAGMKGEIGFPGRPGRPGMNGLKGEKGDPADVLGSRGLPGPPGPPGPPGPPGSIVYNNGNTFSDSSHPAFPGFHQFQGQKGEKGDTGPPGPPGQFPYDASHFGASMRGDKGDAGPKGEKGEPGSTPLYSPGVSGLPGPPGPQGYPGLPGPKGDSIVGPPGPPGPQGPPGIGYEGRQGPPGPPGPPGPPSFPGPHRQAVSIPGPPGPPGPPGPPGISGMSLGLRAVPTYQAMLS…
SIO_010081: COL18A1
subclass of: SO_0000673
so part of: COL18A1
location: complement(join(267330..267543,267626..267741,268083..268280,268364..268624,270233..270268,270445..270573,270653..270726,270882..271026,271122..271244,271339..271382,271472..271534,271665..271698,271892..271963,272148..272213,272426..272479,272597..272632,272726..272800,272943..273005,273164..273190,273297..273326,273466..273555,273626..273661,274014..274076,274198..274242,274336..274362,274474..274536,274618..274758,275689..275733,275911..275973,276095..276244,276322..276375,276515..276601,276682..276744,276835..276861,276953..277123,277223..277249,277337..277440,277538..277676,277857..277916,278008..278088,280727..281271,284951..287927))
location: region:267330-287927:-1
so has part: feature:284951-287927:-1:exon
so has part: feature:280727-281271:-1:exon
so has part: feature:278008-278088:-1:exon
so has part: feature:277857-277916:-1:exon
so has part: feature:277538-277676:-1:exon
so has part: feature:277337-277440:-1:exon
so has part: feature:277223-277249:-1:exon
so has part: feature:276953-277123:-1:exon
so has part: feature:276835-276861:-1:exon
so has part: feature:276682-276744:-1:exon
so has part: feature:276515-276601:-1:exon
so has part: feature:276322-276375:-1:exon
so has part: feature:276095-276244:-1:exon
so has part: feature:275911-275973:-1:exon
so has part: feature:275689-275733:-1:exon
so has part: feature:274618-274758:-1:exon
so has part: feature:274474-274536:-1:exon
so has part: feature:274336-274362:-1:exon
so has part: feature:274198-274242:-1:exon
so has part: feature:274014-274076:-1:exon
so has part: feature:273626-273661:-1:exon
so has part: feature:273466-273555:-1:exon
so has part: feature:273297-273326:-1:exon
so has part: feature:273164-273190:-1:exon
so has part: feature:272943-273005:-1:exon
so has part: feature:272726-272800:-1:exon
so has part: feature:272597-272632:-1:exon
so has part: feature:272426-272479:-1:exon
so has part: feature:272148-272213:-1:exon
so has part: feature:271892-271963:-1:exon
so has part: feature:271665-271698:-1:exon
so has part: feature:271472-271534:-1:exon
so has part: feature:271339-271382:-1:exon
so has part: feature:271122-271244:-1:exon
so has part: feature:270882-271026:-1:exon
so has part: feature:270653-270726:-1:exon
so has part: feature:270445-270573:-1:exon
so has part: feature:270233-270268:-1:exon
so has part: feature:268364-268624:-1:exon
so has part: feature:268083-268280:-1:exon
so has part: feature:267626-267741:-1:exon
so has part: feature:267330-267543:-1:exon

XP_005048978.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:284951-287927:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:280727-281271:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:278008-278088:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:277857-277916:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:277538-277676:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:277337-277440:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:277223-277249:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:276953-277123:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:276835-276861:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:276682-276744:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:276515-276601:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:276322-276375:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:276095-276244:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:275911-275973:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:275689-275733:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:274618-274758:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:274474-274536:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:274336-274362:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:274198-274242:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:274014-274076:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:273626-273661:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:273466-273555:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:273297-273326:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:273164-273190:-1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:272943-273005:-1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:272726-272800:-1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:272597-272632:-1:exon

urn:…
SIO_000300: 28
SIO_000628: feature:272426-272479:-1:exon

urn:…
SIO_000300: 29
SIO_000628: feature:272148-272213:-1:exon

urn:…
SIO_000300: 30
SIO_000628: feature:271892-271963:-1:exon

urn:…
SIO_000300: 31
SIO_000628: feature:271665-271698:-1:exon

urn:…
SIO_000300: 32
SIO_000628: feature:271472-271534:-1:exon

urn:…
SIO_000300: 33
SIO_000628: feature:271339-271382:-1:exon

urn:…
SIO_000300: 34
SIO_000628: feature:271122-271244:-1:exon

urn:…
SIO_000300: 35
SIO_000628: feature:270882-271026:-1:exon

urn:…
SIO_000300: 36
SIO_000628: feature:270653-270726:-1:exon

urn:…
SIO_000300: 37
SIO_000628: feature:270445-270573:-1:exon

urn:…
SIO_000300: 38
SIO_000628: feature:270233-270268:-1:exon

urn:…
SIO_000300: 39
SIO_000628: feature:268364-268624:-1:exon

urn:…
SIO_000300: 40
SIO_000628: feature:268083-268280:-1:exon

urn:…
SIO_000300: 41
SIO_000628: feature:267626-267741:-1:exon

urn:…
SIO_000300: 42
SIO_000628: feature:267330-267543:-1:exon

LOC101805668
type: Gene
subclass of: SO_0000704
RO_0002162: 59894
gene: LOC101805668
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 317358..323072
location: region:317358-323072:1
so has part: feature:317358-323072:1:exon
subclass of: SO_0000010

101805668
type: Gene
SIO_000068: ncbigene

position:317358:1
position: 317358
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:323072:1
position: 323072
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:317358-323072:1:exon

LOC101805668
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59894
gene: LOC101805668
product: maestro heat-like repeat-containing protein family member 6
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 98% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_005048941.2
SIO_010081: LOC101805668
subclass of: SO_0000673
so part of: LOC101805668
location: join(317358..317664,317848..317996,318269..318416,318661..318848,318929..319066,319339..319495,319668..319805,320967..321143,321276..321431,321606..321686,321872..321973,322301..322403,322484..322531,322806..323072)
location: region:317358-323072:1
so has part: feature:317358-317664:1:exon
so has part: feature:317848-317996:1:exon
so has part: feature:318269-318416:1:exon
so has part: feature:318661-318848:1:exon
so has part: feature:318929-319066:1:exon
so has part: feature:319339-319495:1:exon
so has part: feature:319668-319805:1:exon
so has part: feature:320967-321143:1:exon
so has part: feature:321276-321431:1:exon
so has part: feature:321606-321686:1:exon
so has part: feature:321872-321973:1:exon
so has part: feature:322301-322403:1:exon
so has part: feature:322484-322531:1:exon
so has part: feature:322806-323072:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:317358-317664:1:exon

position:317664:1
position: 317664
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:317848-317996:1:exon

position:317848:1
position: 317848
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:317996:1
position: 317996
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:318269-318416:1:exon

position:318269:1
position: 318269
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:318416:1
position: 318416
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:318661-318848:1:exon

position:318661:1
position: 318661
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:318848:1
position: 318848
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:318929-319066:1:exon

position:318929:1
position: 318929
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:319066:1
position: 319066
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:319339-319495:1:exon

position:319339:1
position: 319339
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:319495:1
position: 319495
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:319668-319805:1:exon

position:319668:1
position: 319668
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:319805:1
position: 319805
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:320967-321143:1:exon

position:320967:1
position: 320967
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:321143:1
position: 321143
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:321276-321431:1:exon

position:321276:1
position: 321276
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:321431:1
position: 321431
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:321606-321686:1:exon

position:321606:1
position: 321606
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:321686:1
position: 321686
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:321872-321973:1:exon

position:321872:1
position: 321872
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:321973:1
position: 321973
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:322301-322403:1:exon

position:322301:1
position: 322301
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:322403:1
position: 322403
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:322484-322531:1:exon

position:322484:1
position: 322484
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:322531:1
position: 322531
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:322806-323072:1:exon

position:322806:1
position: 322806
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC101805668
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59894
gene: LOC101805668
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: maestro heat-like repeat-containing protein family member 6
translation: MANTDITATQSMANTKDSAPSMDFFGERVVSHPNEVPDFVRNMHQRLVSNASPNDRMLMDIVRLAEAHPADVAVTLLRRAPSCDRAARIMWRTIASSEMALEKVLPTLLCVLEDWPLHRVSASDGDKTKVFALAATVVVWEILCLPWCPAPFMEYSPRLLVALLFQVFVSTLDMPEEVNTFWKGYQEQLSLPISINRFAVQTVRALFRHLRCLDLLVAVERKCGWDTLLCAATHHYAMGLLAREMHRTSNPLCSCIAEIRHVLMPLCSHVALHLLQLLSTQEPRWDLPALAFLVEVLECHDMKEWSDSALEIISRRLQSKSKEKRRLALRGLVVLSKDPSLAEGIRSLTQSLMGLLQDADGEVVALILSVFLNELEDRATLISSPTALQLAEVLRQLFDYDNSHVPLLSIRLFRAVMELVMDKGKKPLKKHVSQSLLPLFFHYHDQNWHVAEASRETLLCAAKFLKRRRLKQLVKKESTASRETLLCAAKFLNKRDLKKQVKEEKLWKFAECLLAEDRSRAAEHLRQALPYLQSPQEPLREAAVRFIGRYLRKQQEETWLIYKALQDLSDDISPTISSLALQTLQLLRAAQRAPYSSGFRRCKTTSKRVGGRGSPKAALWGSLWKSMNN
SIO_010081: LOC101805668
subclass of: SO_0000673
so part of: LOC101805668
location: join(317560..317664,317848..317996,318269..318416,318661..318848,318929..319066,319339..319495,319668..319805,320967..321143,321276..321431,321606..321686,321872..321973,322301..322403,322484..322531,322806..323005)
location: region:317560-323005:1
so has part: feature:317560-317664:1:exon
so has part: feature:317848-317996:1:exon
so has part: feature:318269-318416:1:exon
so has part: feature:318661-318848:1:exon
so has part: feature:318929-319066:1:exon
so has part: feature:319339-319495:1:exon
so has part: feature:319668-319805:1:exon
so has part: feature:320967-321143:1:exon
so has part: feature:321276-321431:1:exon
so has part: feature:321606-321686:1:exon
so has part: feature:321872-321973:1:exon
so has part: feature:322301-322403:1:exon
so has part: feature:322484-322531:1:exon
so has part: feature:322806-323005:1:exon

XP_005048998.2
type: Protein
SIO_000068: ncbiprotein

position:317560:1
position: 317560
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:323005:1
position: 323005
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:317560-317664:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:317848-317996:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:318269-318416:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:318661-318848:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:318929-319066:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:319339-319495:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:319668-319805:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:320967-321143:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:321276-321431:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:321606-321686:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:321872-321973:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:322301-322403:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:322484-322531:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:322806-323005:1:exon

LOC101822131
type: Gene
subclass of: SO_0000704
RO_0002162: 59894
gene: LOC101822131
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(<336453..354140)
location: region:336453-354140:-1
so has part: feature:336453-354140:-1:exon
subclass of: SO_0000010

101822131
type: Gene
SIO_000068: ncbigene

position:336453:-1
position: 336453
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:354140:-1
position: 354140
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:336453-354140:-1:exon

LOC101822131
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59894
gene: LOC101822131
product: aryl hydrocarbon receptor-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 47 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XM_005048940.2
SIO_010081: LOC101822131
subclass of: SO_0000673
so part of: LOC101822131
location: complement(join(<336453..337629,337987..338128,338394..338503,338582..338784,339351..339481,339740..339845,340746..340835,344282..344388,353805..354140))
location: region:336453-354140:-1
so has part: feature:353805-354140:-1:exon
so has part: feature:344282-344388:-1:exon
so has part: feature:340746-340835:-1:exon
so has part: feature:339740-339845:-1:exon
so has part: feature:339351-339481:-1:exon
so has part: feature:338582-338784:-1:exon
so has part: feature:338394-338503:-1:exon
so has part: feature:337987-338128:-1:exon
so has part: feature:336453-337629:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:353805-354140:-1:exon

position:353805:-1
position: 353805
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:344282-344388:-1:exon

position:344282:-1
position: 344282
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:344388:-1
position: 344388
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:340746-340835:-1:exon

position:340746:-1
position: 340746
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:340835:-1
position: 340835
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:339740-339845:-1:exon

position:339740:-1
position: 339740
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:339845:-1
position: 339845
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:339351-339481:-1:exon

position:339351:-1
position: 339351
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:339481:-1
position: 339481
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:338582-338784:-1:exon

position:338582:-1
position: 338582
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:338784:-1
position: 338784
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:338394-338503:-1:exon

position:338394:-1
position: 338394
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:338503:-1
position: 338503
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:337987-338128:-1:exon

position:337987:-1
position: 337987
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:338128:-1
position: 338128
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:336453-337629:-1:exon

position:337629:-1
position: 337629
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC101822131
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59894
gene: LOC101822131
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: aryl hydrocarbon receptor-like
translation: MRGFPFPINAAAPGRTGPGLAEGGGSNPSKRHRERLNRELERLAGLLPFPPDVVAGLDKLSVLRLSAAFLRARSFLGVALKNPGAKEAQRDGTCGTGPALGLAAVPEGELLLQALNGFVLVVTSEGLIFYSSHTIQDYLGFHQTDVMHQSIFELIHTEDQPEFRRNLHWALDPPRTPKVGKSVDSCAAIYKPEQLPPENSSFLERSFVCRFRCLLDNSSGFLALNLQGRLKFLHGQNRRSEDGSAMPPQLALFAISTPLQPPSLLQIQTKNMIFRTKHKLDFTPLACDAKGKIVLGYTEAELRMCGTGYQFVHAADTLYCAENHVRMMRTGESGLTVFRLLTKDNRWKWVQANARLVYKNGKPDYIVVTQRPLVDEEGGEHLRKRSTHLPFTFTTGEALLYQSTCPLPGFPGLYQSKGKPCKSKKPSCSHVGSSQKNGIDPRSLLGTVMRQDEAVYASHPPPTANPSFSSAFQLGGVSLPGAGGGAGSIGTAPASSSGNSLQEKLLDLQQEDPLLATMNSLSIKSDESCSNELFSALEGLGLNAEDLELLLLDEKMVMVDMDPGQSPSLNDSLASEQILSSVPSRPVDEHEGGQQVSHLPGTASCHMESKDSRCHLAQHAGQPSTALGQPPALLWEQALGAVPGLLVELAKQEEPSSGSQWRPAGEQTVLHFLQPGQGTPWDRAPSSAPRALCLQEPPQAGQLQGDVPAVQPVLGDAHQSFSLPSQCQDQLKHCHLLMNGVCGHSPSSSPHPSRWQDYAYPLLESL
SIO_010081: LOC101822131
subclass of: SO_0000673
so part of: LOC101822131
location: complement(join(<336453..337629,337987..338128,338394..338503,338582..338784,339351..339481,339740..339845,340746..340835,344282..344388,353805..354036))
location: region:336453-354036:-1
so has part: feature:353805-354036:-1:exon
so has part: feature:344282-344388:-1:exon
so has part: feature:340746-340835:-1:exon
so has part: feature:339740-339845:-1:exon
so has part: feature:339351-339481:-1:exon
so has part: feature:338582-338784:-1:exon
so has part: feature:338394-338503:-1:exon
so has part: feature:337987-338128:-1:exon
so has part: feature:336453-337629:-1:exon

XP_005048997.2
type: Protein
SIO_000068: ncbiprotein

position:354036:-1
position: 354036
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:353805-354036:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:344282-344388:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:340746-340835:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:339740-339845:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:339351-339481:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:338582-338784:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:338394-338503:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:337987-338128:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:336453-337629:-1:exon

LOC101817470
type: Gene
subclass of: SO_0000704
RO_0002162: 59894
gene: LOC101817470
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(361323..378632)
location: region:361323-378632:-1
so has part: feature:361323-378632:-1:exon
subclass of: SO_0000010

101817470
type: Gene
SIO_000068: ncbigene

position:361323:-1
position: 361323
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:378632:-1
position: 378632
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:361323-378632:-1:exon

LOC101817470
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59894
gene: LOC101817470
product: aryl hydrocarbon receptor-like
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 65 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XM_005048917.2
SIO_010081: LOC101817470
subclass of: SO_0000673
so part of: LOC101817470
location: complement(join(361323..362944,363317..363458,363748..363857,364169..364359,364498..364640,364749..364848,365099..365188,367467..367582,375281..375468,378547..378632))
location: region:361323-378632:-1
so has part: feature:378547-378632:-1:exon
so has part: feature:375281-375468:-1:exon
so has part: feature:367467-367582:-1:exon
so has part: feature:365099-365188:-1:exon
so has part: feature:364749-364848:-1:exon
so has part: feature:364498-364640:-1:exon
so has part: feature:364169-364359:-1:exon
so has part: feature:363748-363857:-1:exon
so has part: feature:363317-363458:-1:exon
so has part: feature:361323-362944:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:378547-378632:-1:exon

position:378547:-1
position: 378547
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:375281-375468:-1:exon

position:375281:-1
position: 375281
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:375468:-1
position: 375468
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:367467-367582:-1:exon

position:367467:-1
position: 367467
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:367582:-1
position: 367582
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:365099-365188:-1:exon

position:365099:-1
position: 365099
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:365188:-1
position: 365188
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:364749-364848:-1:exon

position:364749:-1
position: 364749
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:364848:-1
position: 364848
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:364498-364640:-1:exon

position:364498:-1
position: 364498
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:364640:-1
position: 364640
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:364169-364359:-1:exon

position:364169:-1
position: 364169
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:364359:-1
position: 364359
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:363748-363857:-1:exon

position:363748:-1
position: 363748
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:363857:-1
position: 363857
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:363317-363458:-1:exon

position:363317:-1
position: 363317
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:363458:-1
position: 363458
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:361323-362944:-1:exon

position:362944:-1
position: 362944
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC101817470
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59894
gene: LOC101817470
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: aryl hydrocarbon receptor-like
translation: MYAGRKRKKPVPKSPKPPPPEGVKSNPSKRHRDRLNQELNTLTGLLPFPEDVRSRLDKLSILRLTVGYLKVKSYLRAAAPKVGNCVDQLRAPGGDRWMEPQGDRELFPEGELLLQALNGFVIAVTGDGYIFYISPTVQDYLGFHQSDLIYQSVYELIHADDRAAFRCQLHRSPLHTADTFPPEQPLLAGHGASSSPQHLRAEKQSFVERSFTCRFRCLLDNSSGFLALNFRGRLKFLLGQQKSAADKSPVALFAIATLLQPLSILELRTKTLIFQTKHKLDFTPMACDSRGKVVLGYTEVELCRRGSGYQFVHAADMMHCAEHHVRMMKTGESGLTVFRLLTKRGRWVWVQANARLVYKGDKPDCIIARQRALSNEEGEEHLRKRNLQLPFSFATGEAVLYGNYVPGFLDSFQAKEELQVQANSNPEQHLVDPNSLLGAVMRQDASIYNCHADNVPQFSLPGFPPEPDGLSQYEDASSAKVDSDPLLVVIQRLFEKREVAGNVCPSLGMGSTELQQWEEALLGLEAAQEPPAQGFSQRLATKVTSCVEQMMWSSALREDFPPCHEENSVVAHFQRCRAAGSVSPAQPRAAGTQGGQGAVGSVASIASEGSSAQPEQQVPFNPARLVAGTGLGIPISSSTSSAALQLANQAIQAGATSSAPVDNTAPTAQSQPRCQLVGSNTLVTMWHNVPLQANPASCPSDAWLAIAPKRLEAAGAHMESQKSAGSPESPPGAELWLPPPSQSIPCPTQGLHDSLFSGDGKLCDVEAALPAPLGASTLPGHGDFPRQPLAAHVEPSFSWEEEQAALREDKCFSQLWLPQSGAAPQRSHGAGPVHSSLSTDPSVHQMDCVVLPECQYGNSLFRHESSFLRDAAEXTPSPAARCSALLC
SIO_010081: LOC101817470
subclass of: SO_0000673
so part of: LOC101817470
location: complement(join(361403..362944,363317..363458,363748..363857,364169..364359,364498..364640,364749..364848,365099..365188,367467..367582,375281..375468,378547..378587))
location: region:361403-378587:-1
so has part: feature:378547-378587:-1:exon
so has part: feature:375281-375468:-1:exon
so has part: feature:367467-367582:-1:exon
so has part: feature:365099-365188:-1:exon
so has part: feature:364749-364848:-1:exon
so has part: feature:364498-364640:-1:exon
so has part: feature:364169-364359:-1:exon
so has part: feature:363748-363857:-1:exon
so has part: feature:363317-363458:-1:exon
so has part: feature:361403-362944:-1:exon

XP_005048974.2
type: Protein
SIO_000068: ncbiprotein

position:361403:-1
position: 361403
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:378587:-1
position: 378587
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:378547-378587:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:375281-375468:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:367467-367582:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:365099-365188:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:364749-364848:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:364498-364640:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:364169-364359:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:363748-363857:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:363317-363458:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:361403-362944:-1:exon

NDUFA10
type: Gene
subclass of: SO_0000704
RO_0002162: 59894
gene: NDUFA10
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 380805..409051
location: region:380805-409051:1
so has part: feature:380805-409051:1:exon
subclass of: SO_0000010

101817664
type: Gene
SIO_000068: ncbigene

position:380805:1
position: 380805
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:409051:1
position: 409051
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:380805-409051:1:exon

NDUFA10
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59894
gene: NDUFA10
product: NADH:ubiquinone oxidoreductase subunit A10
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 93% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_005048919.2
SIO_010081: NDUFA10
subclass of: SO_0000673
so part of: NDUFA10
location: join(380805..380883,381461..381634,382051..382266,382350..382436,383373..383494,384921..385000,388139..388193,391704..391789,397396..397504,408587..409051)
location: region:380805-409051:1
so has part: feature:380805-380883:1:exon
so has part: feature:381461-381634:1:exon
so has part: feature:382051-382266:1:exon
so has part: feature:382350-382436:1:exon
so has part: feature:383373-383494:1:exon
so has part: feature:384921-385000:1:exon
so has part: feature:388139-388193:1:exon
so has part: feature:391704-391789:1:exon
so has part: feature:397396-397504:1:exon
so has part: feature:408587-409051:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:380805-380883:1:exon

position:380883:1
position: 380883
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:381461-381634:1:exon

position:381461:1
position: 381461
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:381634:1
position: 381634
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:382051-382266:1:exon

position:382051:1
position: 382051
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:382266:1
position: 382266
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:382350-382436:1:exon

position:382350:1
position: 382350
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:382436:1
position: 382436
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:383373-383494:1:exon

position:383373:1
position: 383373
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:383494:1
position: 383494
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:384921-385000:1:exon

position:384921:1
position: 384921
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:385000:1
position: 385000
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:388139-388193:1:exon

position:388139:1
position: 388139
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:388193:1
position: 388193
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:391704-391789:1:exon

position:391704:1
position: 391704
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:391789:1
position: 391789
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:397396-397504:1:exon

position:397396:1
position: 397396
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:397504:1
position: 397504
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:408587-409051:1:exon

position:408587:1
position: 408587
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

NDUFA10
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59894
gene: NDUFA10
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial
translation: MRGRLEQMRESGVQRPSVVAVVSGAAIQARIHTSPEQRLQYGWLAYMLGERASKKFTERSKVFTVEGNLSSGKGKLAQQIAEKLGMKHFPEADIHYQDRISGDGQLLAEKFNGFCNLEKFYMDPKSPDGHSYRMQSWIFGNRVLQYADALEHLLSTGQGVVLERSPYSDFVFLDAMLKQGYVHRRCLDHYKEVKEISISELLPPHLVIYIDTPVPEVQKRIQEKGKPYEKKVSPSYLQSIEDAYKRTFLPEISESSEVLQYSATAAEDVEKVIEDIEYLKFDKGPWVEQDDVSFHQLRLHVQDKSAVLDSVSIPRFIPEITIGGSQFDKIYYEYRALPGRKYRPGYNADAGDKWIWLK
SIO_010081: NDUFA10
subclass of: SO_0000673
so part of: NDUFA10
location: join(380805..380883,381461..381634,382051..382266,382350..382436,383373..383494,384921..385000,388139..388193,391704..391789,397396..397504,408587..408655)
location: region:380805-408655:1
so has part: feature:380805-380883:1:exon
so has part: feature:381461-381634:1:exon
so has part: feature:382051-382266:1:exon
so has part: feature:382350-382436:1:exon
so has part: feature:383373-383494:1:exon
so has part: feature:384921-385000:1:exon
so has part: feature:388139-388193:1:exon
so has part: feature:391704-391789:1:exon
so has part: feature:397396-397504:1:exon
so has part: feature:408587-408655:1:exon

XP_005048976.2
type: Protein
SIO_000068: ncbiprotein

position:408655:1
position: 408655
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:380805-380883:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:381461-381634:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:382051-382266:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:382350-382436:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:383373-383494:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:384921-385000:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:388139-388193:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:391704-391789:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:397396-397504:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:408587-408655:1:exon

HDAC4
type: Gene
subclass of: SO_0000704
RO_0002162: 59894
gene: HDAC4
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 526968..690522
location: region:526968-690522:1
so has part: feature:526968-690522:1:exon
subclass of: SO_0000010

101816758
type: Gene
SIO_000068: ncbigene

position:526968:1
position: 526968
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:690522:1
position: 690522
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:526968-690522:1:exon

HDAC4
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59894
gene: HDAC4
product: histone deacetylase 4, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_005048915.2
SIO_010081: HDAC4
subclass of: SO_0000673
so part of: HDAC4
location: join(526968..527252,537599..537848,582890..582961,606118..606362,619869..620019,622961..623081,628329..628450,636481..636621,638481..638593,642189..642305,644423..644621,646977..647206,653140..653391,654631..654817,660631..660764,662051..662171,665661..665707,671840..671947,672187..672242,672732..672819,673730..673849,675638..675735,682238..682356,684085..684218,687875..687959,689148..689289,689742..690522)
location: region:526968-690522:1
so has part: feature:526968-527252:1:exon
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urn:…
SIO_000300: 1
SIO_000628: feature:526968-527252:1:exon

position:527252:1
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reference: sequence
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urn:…
SIO_000300: 2
SIO_000628: feature:537599-537848:1:exon

position:537599:1
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position:537848:1
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urn:…
SIO_000300: 3
SIO_000628: feature:582890-582961:1:exon

position:582890:1
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position:582961:1
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reference: sequence
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urn:…
SIO_000300: 4
SIO_000628: feature:606118-606362:1:exon

position:606118:1
position: 606118
reference: sequence
type: ForwardStrandPosition
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position:606362:1
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reference: sequence
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urn:…
SIO_000300: 5
SIO_000628: feature:619869-620019:1:exon

position:619869:1
position: 619869
reference: sequence
type: ForwardStrandPosition
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position:620019:1
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reference: sequence
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urn:…
SIO_000300: 6
SIO_000628: feature:622961-623081:1:exon

position:622961:1
position: 622961
reference: sequence
type: ForwardStrandPosition
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position:623081:1
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urn:…
SIO_000300: 7
SIO_000628: feature:628329-628450:1:exon

position:628329:1
position: 628329
reference: sequence
type: ForwardStrandPosition
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position:628450:1
position: 628450
reference: sequence
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urn:…
SIO_000300: 8
SIO_000628: feature:636481-636621:1:exon

position:636481:1
position: 636481
reference: sequence
type: ForwardStrandPosition
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position:636621:1
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reference: sequence
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urn:…
SIO_000300: 9
SIO_000628: feature:638481-638593:1:exon

position:638481:1
position: 638481
reference: sequence
type: ForwardStrandPosition
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position:638593:1
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reference: sequence
type: ForwardStrandPosition
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urn:…
SIO_000300: 10
SIO_000628: feature:642189-642305:1:exon

position:642189:1
position: 642189
reference: sequence
type: ForwardStrandPosition
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position:642305:1
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reference: sequence
type: ForwardStrandPosition
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urn:…
SIO_000300: 11
SIO_000628: feature:644423-644621:1:exon

position:644423:1
position: 644423
reference: sequence
type: ForwardStrandPosition
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position:644621:1
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reference: sequence
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urn:…
SIO_000300: 12
SIO_000628: feature:646977-647206:1:exon

position:646977:1
position: 646977
reference: sequence
type: ForwardStrandPosition
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position:647206:1
position: 647206
reference: sequence
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urn:…
SIO_000300: 13
SIO_000628: feature:653140-653391:1:exon

position:653140:1
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reference: sequence
type: ForwardStrandPosition
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position:653391:1
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urn:…
SIO_000300: 14
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reference: sequence
type: ForwardStrandPosition
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position:654817:1
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urn:…
SIO_000300: 15
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position:660764:1
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urn:…
SIO_000300: 16
SIO_000628: feature:662051-662171:1:exon

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type: ForwardStrandPosition
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position:662171:1
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urn:…
SIO_000300: 17
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reference: sequence
type: ForwardStrandPosition
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position:665707:1
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urn:…
SIO_000300: 18
SIO_000628: feature:671840-671947:1:exon

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type: ForwardStrandPosition
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position:671947:1
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urn:…
SIO_000300: 19
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position:672187:1
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reference: sequence
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position:672242:1
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urn:…
SIO_000300: 20
SIO_000628: feature:672732-672819:1:exon

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position:672819:1
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urn:…
SIO_000300: 21
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type: ForwardStrandPosition
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position:673849:1
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urn:…
SIO_000300: 22
SIO_000628: feature:675638-675735:1:exon

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urn:…
SIO_000300: 23
SIO_000628: feature:682238-682356:1:exon

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SIO_000300: 24
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urn:…
SIO_000300: 25
SIO_000628: feature:687875-687959:1:exon

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urn:…
SIO_000300: 26
SIO_000628: feature:689148-689289:1:exon

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urn:…
SIO_000300: 27
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position:689742:1
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reference: sequence
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HDAC4
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59894
gene: HDAC4
product: histone deacetylase 4, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_005048914.2
SIO_010081: HDAC4
subclass of: SO_0000673
so part of: HDAC4
location: join(526968..527252,537599..537848,582890..582961,606118..606362,619869..620019,622961..623081,628329..628450,636481..636621,638481..638593,642189..642305,644423..644621,646992..647206,653140..653391,654631..654817,660631..660764,662051..662171,665661..665707,671840..671947,672187..672242,672732..672819,673730..673849,675638..675735,682238..682356,684085..684218,687875..687959,689148..690522)
location: region:526968-690522:1
so has part: feature:526968-527252:1:exon
so has part: feature:537599-537848:1:exon
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so has part: feature:606118-606362:1:exon
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so has part: feature:636481-636621:1:exon
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so has part: feature:644423-644621:1:exon
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so has part: feature:653140-653391:1:exon
so has part: feature:654631-654817:1:exon
so has part: feature:660631-660764:1:exon
so has part: feature:662051-662171:1:exon
so has part: feature:665661-665707:1:exon
so has part: feature:671840-671947:1:exon
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so has part: feature:672732-672819:1:exon
so has part: feature:673730-673849:1:exon
so has part: feature:675638-675735:1:exon
so has part: feature:682238-682356:1:exon
so has part: feature:684085-684218:1:exon
so has part: feature:687875-687959:1:exon
so has part: feature:689148-690522:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:526968-527252:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:537599-537848:1:exon

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SIO_000300: 3
SIO_000628: feature:582890-582961:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:606118-606362:1:exon

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SIO_000300: 5
SIO_000628: feature:619869-620019:1:exon

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SIO_000300: 6
SIO_000628: feature:622961-623081:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:628329-628450:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:636481-636621:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:638481-638593:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:642189-642305:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:644423-644621:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:646992-647206:1:exon

position:646992:1
position: 646992
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:653140-653391:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:654631-654817:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:660631-660764:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:662051-662171:1:exon

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SIO_000300: 17
SIO_000628: feature:665661-665707:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:671840-671947:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:672187-672242:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:672732-672819:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:673730-673849:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:675638-675735:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:682238-682356:1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:684085-684218:1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:687875-687959:1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:689148-690522:1:exon

HDAC4
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59894
gene: HDAC4
product: histone deacetylase 4, transcript variant X5
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_016299857.1
SIO_010081: HDAC4
subclass of: SO_0000673
so part of: HDAC4
location: join(526968..527252,537599..537848,582890..582961,606118..606362,619869..620019,622961..623081,628329..628450,636481..636621,638481..638593,642189..642305,644423..644621,646992..647206,653140..653391,654631..654817,660631..660764,662051..662171,665661..665707,671840..671947,672187..672242,672732..672819,673730..673849,675638..675735,682238..682356,684085..684218,687875..687959,689148..689289,689742..690522)
location: region:526968-690522:1
so has part: feature:526968-527252:1:exon
so has part: feature:537599-537848:1:exon
so has part: feature:582890-582961:1:exon
so has part: feature:606118-606362:1:exon
so has part: feature:619869-620019:1:exon
so has part: feature:622961-623081:1:exon
so has part: feature:628329-628450:1:exon
so has part: feature:636481-636621:1:exon
so has part: feature:638481-638593:1:exon
so has part: feature:642189-642305:1:exon
so has part: feature:644423-644621:1:exon
so has part: feature:646992-647206:1:exon
so has part: feature:653140-653391:1:exon
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so has part: feature:660631-660764:1:exon
so has part: feature:662051-662171:1:exon
so has part: feature:665661-665707:1:exon
so has part: feature:671840-671947:1:exon
so has part: feature:672187-672242:1:exon
so has part: feature:672732-672819:1:exon
so has part: feature:673730-673849:1:exon
so has part: feature:675638-675735:1:exon
so has part: feature:682238-682356:1:exon
so has part: feature:684085-684218:1:exon
so has part: feature:687875-687959:1:exon
so has part: feature:689148-689289:1:exon
so has part: feature:689742-690522:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:526968-527252:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:537599-537848:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:582890-582961:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:606118-606362:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:619869-620019:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:622961-623081:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:628329-628450:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:636481-636621:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:638481-638593:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:642189-642305:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:644423-644621:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:646992-647206:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:653140-653391:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:654631-654817:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:660631-660764:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:662051-662171:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:665661-665707:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:671840-671947:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:672187-672242:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:672732-672819:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:673730-673849:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:675638-675735:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:682238-682356:1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:684085-684218:1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:687875-687959:1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:689148-689289:1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:689742-690522:1:exon

HDAC4
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59894
gene: HDAC4
product: histone deacetylase 4, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_016299856.1
SIO_010081: HDAC4
subclass of: SO_0000673
so part of: HDAC4
location: join(526968..527252,537599..537693,537809..537848,582890..582961,606118..606362,619869..620019,622961..623081,628329..628450,636481..636621,638481..638593,642189..642305,644423..644621,646977..647206,653140..653391,654631..654817,660631..660764,662051..662171,665661..665707,671840..671947,672187..672242,672732..672819,673730..673849,675638..675735,682238..682356,684085..684218,687875..687959,689148..690522)
location: region:526968-690522:1
so has part: feature:526968-527252:1:exon
so has part: feature:537599-537693:1:exon
so has part: feature:537809-537848:1:exon
so has part: feature:582890-582961:1:exon
so has part: feature:606118-606362:1:exon
so has part: feature:619869-620019:1:exon
so has part: feature:622961-623081:1:exon
so has part: feature:628329-628450:1:exon
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so has part: feature:665661-665707:1:exon
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so has part: feature:672187-672242:1:exon
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so has part: feature:684085-684218:1:exon
so has part: feature:687875-687959:1:exon
so has part: feature:689148-690522:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:526968-527252:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:537599-537693:1:exon

position:537693:1
position: 537693
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:537809-537848:1:exon

position:537809:1
position: 537809
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:582890-582961:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:606118-606362:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:619869-620019:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:622961-623081:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:628329-628450:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:636481-636621:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:638481-638593:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:642189-642305:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:644423-644621:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:646977-647206:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:653140-653391:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:654631-654817:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:660631-660764:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:662051-662171:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:665661-665707:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:671840-671947:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:672187-672242:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:672732-672819:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:673730-673849:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:675638-675735:1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:682238-682356:1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:684085-684218:1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:687875-687959:1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:689148-690522:1:exon

HDAC4
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59894
gene: HDAC4
product: histone deacetylase 4, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_005048912.2
SIO_010081: HDAC4
subclass of: SO_0000673
so part of: HDAC4
location: join(526968..527252,537599..537693,582890..582961,606118..606362,619869..620019,622961..623081,628329..628450,636481..636621,638481..638593,642189..642305,644423..644621,646977..647206,653140..653391,654631..654817,660631..660764,662051..662171,665661..665707,671840..671947,672187..672242,672732..672819,673730..673849,675638..675735,682238..682356,684085..684218,687875..687959,689148..690522)
location: region:526968-690522:1
so has part: feature:526968-527252:1:exon
so has part: feature:537599-537693:1:exon
so has part: feature:582890-582961:1:exon
so has part: feature:606118-606362:1:exon
so has part: feature:619869-620019:1:exon
so has part: feature:622961-623081:1:exon
so has part: feature:628329-628450:1:exon
so has part: feature:636481-636621:1:exon
so has part: feature:638481-638593:1:exon
so has part: feature:642189-642305:1:exon
so has part: feature:644423-644621:1:exon
so has part: feature:646977-647206:1:exon
so has part: feature:653140-653391:1:exon
so has part: feature:654631-654817:1:exon
so has part: feature:660631-660764:1:exon
so has part: feature:662051-662171:1:exon
so has part: feature:665661-665707:1:exon
so has part: feature:671840-671947:1:exon
so has part: feature:672187-672242:1:exon
so has part: feature:672732-672819:1:exon
so has part: feature:673730-673849:1:exon
so has part: feature:675638-675735:1:exon
so has part: feature:682238-682356:1:exon
so has part: feature:684085-684218:1:exon
so has part: feature:687875-687959:1:exon
so has part: feature:689148-690522:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:526968-527252:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:537599-537693:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:582890-582961:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:606118-606362:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:619869-620019:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:622961-623081:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:628329-628450:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:636481-636621:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:638481-638593:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:642189-642305:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:644423-644621:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:646977-647206:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:653140-653391:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:654631-654817:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:660631-660764:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:662051-662171:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:665661-665707:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:671840-671947:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:672187-672242:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:672732-672819:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:673730-673849:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:675638-675735:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:682238-682356:1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:684085-684218:1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:687875-687959:1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:689148-690522:1:exon

HDAC4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59894
gene: HDAC4
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: histone deacetylase 4 isoform X4
translation: MSSQSHPDGLSGRDQPVELLNPPRVNHMPSSVDVSTALPLQVAPSSVPMDLRLDHQFSMPVTEPTLREQQLQQELLALKQKQQIQRQILIAEFQRQHEQLSRQHEAQLHEHIKQQQEMLAMKHQQELLEHQRKLEQHRQEQELEKQHREQKLQQLKNKEKGKESAVASTEVKMKLQEFVLNKKKALAHRNLNHCISSDPRFWYGKTQHSSLDQSSPPQSGVSGTYNHPVLGMYDSKDDFPLRKTASEPNLKLRSRLKQKVAERRSSPLLRRKDGPVVTALKKRPLDVTGTADSACNSAPGSGPSSPNNSSNNISTENGIAGSVTSIQAETSLAHRLVNREGSVTQLPLYTSPSLPNITLGLPATGPSSAGQAQQDAERLAIPTLQQRISLFPGTHLTPYLSTTTLERDGGTAHNPLLQHMVLLEQPTAQTPLVTDWYLSGLPLHAQPLVGGERVSPSIHKLRQHRPLGRTQSAPLPQNAQALQQLVIQQQHQQFLEKHKQQFQQQQLHINKIISKPAEPARQHESHPEETEEELREHQALLEEPYGERGQKEPPGLASVVQVKQEPIESDEEEAEPQQELEAGQRQAEQELLFRQQALLLEQQRIHQLRNYQASLEAAGMPVSFGGHRPLSRAQSSPASATFPMSVQEPPTKPRFTTGLVYDTLMLKHQCTCGNTNSHPEHAGRIQSIWSRLQETGLRGKCECIRGRKATLEELQTVHSEAHTLLYGTNPLNRQKLDSKKLLGSLTSMFVRLPCGGVGVDSDTIWNEVHSSGAARLAVGCVIELVFKVATGELKNGFAVVRPPGHHAEESTPMGFCYFNSVAIAAKLLQQRLNVSKILIVDWDVHHGNGTQQAFYNDPNVLYISLHRYDDGNFFPGSGAPDEVGTGAGVGFNVNMAFTGGLDPPMGDTEYLTAFRTVVMPIANEFAPDVVLVSSGFDAVEGHPTPLGGYNLSAKCFGYLTKQLMGLAGGRVVLALEGGHDLTAICDASEACVSALLGNELDPLPEKVFQQRANANAVHSMEKVIEIHSKYWHSLQRFASTVGYSLVEAQKCENEEAETVTAMASLSVGVKPAEKRPEDEPMEEEPPL
SIO_010081: HDAC4
subclass of: SO_0000673
so part of: HDAC4
location: join(537827..537848,582890..582961,606118..606362,619869..620019,622961..623081,628329..628450,636481..636621,638481..638593,642189..642305,644423..644621,646977..647206,653140..653391,654631..654817,660631..660764,662051..662171,665661..665707,671840..671947,672187..672242,672732..672819,673730..673849,675638..675735,682238..682356,684085..684218,687875..687959,689148..689289,689742..689781)
location: region:537827-689781:1
so has part: feature:537827-537848:1:exon
so has part: feature:582890-582961:1:exon
so has part: feature:606118-606362:1:exon
so has part: feature:619869-620019:1:exon
so has part: feature:622961-623081:1:exon
so has part: feature:628329-628450:1:exon
so has part: feature:636481-636621:1:exon
so has part: feature:638481-638593:1:exon
so has part: feature:642189-642305:1:exon
so has part: feature:644423-644621:1:exon
so has part: feature:646977-647206:1:exon
so has part: feature:653140-653391:1:exon
so has part: feature:654631-654817:1:exon
so has part: feature:660631-660764:1:exon
so has part: feature:662051-662171:1:exon
so has part: feature:665661-665707:1:exon
so has part: feature:671840-671947:1:exon
so has part: feature:672187-672242:1:exon
so has part: feature:672732-672819:1:exon
so has part: feature:673730-673849:1:exon
so has part: feature:675638-675735:1:exon
so has part: feature:682238-682356:1:exon
so has part: feature:684085-684218:1:exon
so has part: feature:687875-687959:1:exon
so has part: feature:689148-689289:1:exon
so has part: feature:689742-689781:1:exon

XP_005048972.2
type: Protein
SIO_000068: ncbiprotein

position:537827:1
position: 537827
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:689781:1
position: 689781
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:537827-537848:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:582890-582961:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:606118-606362:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:619869-620019:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:622961-623081:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:628329-628450:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:636481-636621:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:638481-638593:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:642189-642305:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:644423-644621:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:646977-647206:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:653140-653391:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:654631-654817:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:660631-660764:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:662051-662171:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:665661-665707:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:671840-671947:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:672187-672242:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:672732-672819:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:673730-673849:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:675638-675735:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:682238-682356:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:684085-684218:1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:687875-687959:1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:689148-689289:1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:689742-689781:1:exon

HDAC4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59894
gene: HDAC4
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: histone deacetylase 4 isoform X5
translation: MSSQSHPDGLSGRDQPVELLNPPRVNHMPSSVDVSTALPLQVAPSSVPMDLRLDHQFSMPVTEPTLREQQLQQELLALKQKQQIQRQILIAEFQRQHEQLSRQHEAQLHEHIKQQQEMLAMKHQQELLEHQRKLEQHRQEQELEKQHREQKLQQLKNKEKGKESAVASTEVKMKLQEFVLNKKKALAHRNLNHCISSDPRFWYGKTQHSSLDQSSPPQSGVSGTYNHPVLGMYDSKDDFPLRKTASEPNLKLRSRLKQKVAERRSSPLLRRKDGPVVTALKKRPLDVTGTADSACNSAPGSGPSSPNNSSNNISTENGIAGSVTSIQAETSLAHRLVNREGSVTQLPLYTSPSLPNITLGLPATGPSSAGQAQQDAERLAIPTLQQRISLFPGTHLTPYLSTTTLERDGGTAHNPLLQHMVLLEQPTAQTPLVTGLPLHAQPLVGGERVSPSIHKLRQHRPLGRTQSAPLPQNAQALQQLVIQQQHQQFLEKHKQQFQQQQLHINKIISKPAEPARQHESHPEETEEELREHQALLEEPYGERGQKEPPGLASVVQVKQEPIESDEEEAEPQQELEAGQRQAEQELLFRQQALLLEQQRIHQLRNYQASLEAAGMPVSFGGHRPLSRAQSSPASATFPMSVQEPPTKPRFTTGLVYDTLMLKHQCTCGNTNSHPEHAGRIQSIWSRLQETGLRGKCECIRGRKATLEELQTVHSEAHTLLYGTNPLNRQKLDSKKLLGSLTSMFVRLPCGGVGVDSDTIWNEVHSSGAARLAVGCVIELVFKVATGELKNGFAVVRPPGHHAEESTPMGFCYFNSVAIAAKLLQQRLNVSKILIVDWDVHHGNGTQQAFYNDPNVLYISLHRYDDGNFFPGSGAPDEVGTGAGVGFNVNMAFTGGLDPPMGDTEYLTAFRTVVMPIANEFAPDVVLVSSGFDAVEGHPTPLGGYNLSAKCFGYLTKQLMGLAGGRVVLALEGGHDLTAICDASEACVSALLGNELDPLPEKVFQQRANANAVHSMEKVIEIHSKYWHSLQRFASTVGYSLVEAQKCENEEAETVTAMASLSVGVKPAEKRPEDEPMEEEPPL
SIO_010081: HDAC4
subclass of: SO_0000673
so part of: HDAC4
location: join(537827..537848,582890..582961,606118..606362,619869..620019,622961..623081,628329..628450,636481..636621,638481..638593,642189..642305,644423..644621,646992..647206,653140..653391,654631..654817,660631..660764,662051..662171,665661..665707,671840..671947,672187..672242,672732..672819,673730..673849,675638..675735,682238..682356,684085..684218,687875..687959,689148..689289,689742..689781)
location: region:537827-689781:1
so has part: feature:537827-537848:1:exon
so has part: feature:582890-582961:1:exon
so has part: feature:606118-606362:1:exon
so has part: feature:619869-620019:1:exon
so has part: feature:622961-623081:1:exon
so has part: feature:628329-628450:1:exon
so has part: feature:636481-636621:1:exon
so has part: feature:638481-638593:1:exon
so has part: feature:642189-642305:1:exon
so has part: feature:644423-644621:1:exon
so has part: feature:646992-647206:1:exon
so has part: feature:653140-653391:1:exon
so has part: feature:654631-654817:1:exon
so has part: feature:660631-660764:1:exon
so has part: feature:662051-662171:1:exon
so has part: feature:665661-665707:1:exon
so has part: feature:671840-671947:1:exon
so has part: feature:672187-672242:1:exon
so has part: feature:672732-672819:1:exon
so has part: feature:673730-673849:1:exon
so has part: feature:675638-675735:1:exon
so has part: feature:682238-682356:1:exon
so has part: feature:684085-684218:1:exon
so has part: feature:687875-687959:1:exon
so has part: feature:689148-689289:1:exon
so has part: feature:689742-689781:1:exon

XP_016155343.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:537827-537848:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:582890-582961:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:606118-606362:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:619869-620019:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:622961-623081:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:628329-628450:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:636481-636621:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:638481-638593:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:642189-642305:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:644423-644621:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:646992-647206:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:653140-653391:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:654631-654817:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:660631-660764:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:662051-662171:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:665661-665707:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:671840-671947:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:672187-672242:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:672732-672819:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:673730-673849:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:675638-675735:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:682238-682356:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:684085-684218:1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:687875-687959:1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:689148-689289:1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:689742-689781:1:exon

HDAC4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59894
gene: HDAC4
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: histone deacetylase 4 isoform X1
translation: MSSQSHPDGLSGRDQPVELLNPPRVNHMPSSVDVSTALPLQVAPSSVPMDLRLDHQFSMPVTEPTLREQQLQQELLALKQKQQIQRQILIAEFQRQHEQLSRQHEAQLHEHIKQQQEMLAMKHQQELLEHQRKLEQHRQEQELEKQHREQKLQQLKNKEKGKESAVASTEVKMKLQEFVLNKKKALAHRNLNHCISSDPRFWYGKTQHSSLDQSSPPQSGVSGTYNHPVLGMYDSKDDFPLRKTASEPNLKLRSRLKQKVAERRSSPLLRRKDGPVVTALKKRPLDVTGTADSACNSAPGSGPSSPNNSSNNISTENGIAGSVTSIQAETSLAHRLVNREGSVTQLPLYTSPSLPNITLGLPATGPSSAGQAQQDAERLAIPTLQQRISLFPGTHLTPYLSTTTLERDGGTAHNPLLQHMVLLEQPTAQTPLVTDWYLSGLPLHAQPLVGGERVSPSIHKLRQHRPLGRTQSAPLPQNAQALQQLVIQQQHQQFLEKHKQQFQQQQLHINKIISKPAEPARQHESHPEETEEELREHQALLEEPYGERGQKEPPGLASVVQVKQEPIESDEEEAEPQQELEAGQRQAEQELLFRQQALLLEQQRIHQLRNYQASLEAAGMPVSFGGHRPLSRAQSSPASATFPMSVQEPPTKPRFTTGLVYDTLMLKHQCTCGNTNSHPEHAGRIQSIWSRLQETGLRGKCECIRGRKATLEELQTVHSEAHTLLYGTNPLNRQKLDSKKLLGSLTSMFVRLPCGGVGVDSDTIWNEVHSSGAARLAVGCVIELVFKVATGELKNGFAVVRPPGHHAEESTPMGFCYFNSVAIAAKLLQQRLNVSKILIVDWDVHHGNGTQQAFYNDPNVLYISLHRYDDGNFFPGSGAPDEVGTGAGVGFNVNMAFTGGLDPPMGDTEYLTAFRTVVMPIANEFAPDVVLVSSGFDAVEGHPTPLGGYNLSAKCFGYLTKQLMGLAGGRVVLALEGGHDLTAICDASEACVSALLGNELDPLPEKVFQQRANANAVHSMEKVIEIHSKYWHSLQRFASTVGYSLVEAQKCENEEAETVTAMASLSVGVKPAEKRSVVSLHISRSAQAGGAALQVNPLLSVTATASPTSPVLCGGFPKPSWAAGEQQSHKLCACTLCLSLLL
SIO_010081: HDAC4
subclass of: SO_0000673
so part of: HDAC4
location: join(537827..537848,582890..582961,606118..606362,619869..620019,622961..623081,628329..628450,636481..636621,638481..638593,642189..642305,644423..644621,646977..647206,653140..653391,654631..654817,660631..660764,662051..662171,665661..665707,671840..671947,672187..672242,672732..672819,673730..673849,675638..675735,682238..682356,684085..684218,687875..687959,689148..689494)
location: region:537827-689494:1
so has part: feature:537827-537848:1:exon
so has part: feature:582890-582961:1:exon
so has part: feature:606118-606362:1:exon
so has part: feature:619869-620019:1:exon
so has part: feature:622961-623081:1:exon
so has part: feature:628329-628450:1:exon
so has part: feature:636481-636621:1:exon
so has part: feature:638481-638593:1:exon
so has part: feature:642189-642305:1:exon
so has part: feature:644423-644621:1:exon
so has part: feature:646977-647206:1:exon
so has part: feature:653140-653391:1:exon
so has part: feature:654631-654817:1:exon
so has part: feature:660631-660764:1:exon
so has part: feature:662051-662171:1:exon
so has part: feature:665661-665707:1:exon
so has part: feature:671840-671947:1:exon
so has part: feature:672187-672242:1:exon
so has part: feature:672732-672819:1:exon
so has part: feature:673730-673849:1:exon
so has part: feature:675638-675735:1:exon
so has part: feature:682238-682356:1:exon
so has part: feature:684085-684218:1:exon
so has part: feature:687875-687959:1:exon
so has part: feature:689148-689494:1:exon

XP_016155342.1
type: Protein
SIO_000068: ncbiprotein

position:689494:1
position: 689494
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:537827-537848:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:582890-582961:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:606118-606362:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:619869-620019:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:622961-623081:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:628329-628450:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:636481-636621:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:638481-638593:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:642189-642305:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:644423-644621:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:646977-647206:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:653140-653391:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:654631-654817:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:660631-660764:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:662051-662171:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:665661-665707:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:671840-671947:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:672187-672242:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:672732-672819:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:673730-673849:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:675638-675735:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:682238-682356:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:684085-684218:1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:687875-687959:1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:689148-689494:1:exon

HDAC4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59894
gene: HDAC4
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: histone deacetylase 4 isoform X2
translation: MSSQSHPDGLSGRDQPVELLNPPRVNHMPSSVDVSTALPLQVAPSSVPMDLRLDHQFSMPVTEPTLREQQLQQELLALKQKQQIQRQILIAEFQRQHEQLSRQHEAQLHEHIKQQQEMLAMKHQQELLEHQRKLEQHRQEQELEKQHREQKLQQLKNKEKGKESAVASTEVKMKLQEFVLNKKKALAHRNLNHCISSDPRFWYGKTQHSSLDQSSPPQSGVSGTYNHPVLGMYDSKDDFPLRKTASEPNLKLRSRLKQKVAERRSSPLLRRKDGPVVTALKKRPLDVTGTADSACNSAPGSGPSSPNNSSNNISTENGIAGSVTSIQAETSLAHRLVNREGSVTQLPLYTSPSLPNITLGLPATGPSSAGQAQQDAERLAIPTLQQRISLFPGTHLTPYLSTTTLERDGGTAHNPLLQHMVLLEQPTAQTPLVTGLPLHAQPLVGGERVSPSIHKLRQHRPLGRTQSAPLPQNAQALQQLVIQQQHQQFLEKHKQQFQQQQLHINKIISKPAEPARQHESHPEETEEELREHQALLEEPYGERGQKEPPGLASVVQVKQEPIESDEEEAEPQQELEAGQRQAEQELLFRQQALLLEQQRIHQLRNYQASLEAAGMPVSFGGHRPLSRAQSSPASATFPMSVQEPPTKPRFTTGLVYDTLMLKHQCTCGNTNSHPEHAGRIQSIWSRLQETGLRGKCECIRGRKATLEELQTVHSEAHTLLYGTNPLNRQKLDSKKLLGSLTSMFVRLPCGGVGVDSDTIWNEVHSSGAARLAVGCVIELVFKVATGELKNGFAVVRPPGHHAEESTPMGFCYFNSVAIAAKLLQQRLNVSKILIVDWDVHHGNGTQQAFYNDPNVLYISLHRYDDGNFFPGSGAPDEVGTGAGVGFNVNMAFTGGLDPPMGDTEYLTAFRTVVMPIANEFAPDVVLVSSGFDAVEGHPTPLGGYNLSAKCFGYLTKQLMGLAGGRVVLALEGGHDLTAICDASEACVSALLGNELDPLPEKVFQQRANANAVHSMEKVIEIHSKYWHSLQRFASTVGYSLVEAQKCENEEAETVTAMASLSVGVKPAEKRSVVSLHISRSAQAGGAALQVNPLLSVTATASPTSPVLCGGFPKPSWAAGEQQSHKLCACTLCLSLLL
SIO_010081: HDAC4
subclass of: SO_0000673
so part of: HDAC4
location: join(537827..537848,582890..582961,606118..606362,619869..620019,622961..623081,628329..628450,636481..636621,638481..638593,642189..642305,644423..644621,646992..647206,653140..653391,654631..654817,660631..660764,662051..662171,665661..665707,671840..671947,672187..672242,672732..672819,673730..673849,675638..675735,682238..682356,684085..684218,687875..687959,689148..689494)
location: region:537827-689494:1
so has part: feature:537827-537848:1:exon
so has part: feature:582890-582961:1:exon
so has part: feature:606118-606362:1:exon
so has part: feature:619869-620019:1:exon
so has part: feature:622961-623081:1:exon
so has part: feature:628329-628450:1:exon
so has part: feature:636481-636621:1:exon
so has part: feature:638481-638593:1:exon
so has part: feature:642189-642305:1:exon
so has part: feature:644423-644621:1:exon
so has part: feature:646992-647206:1:exon
so has part: feature:653140-653391:1:exon
so has part: feature:654631-654817:1:exon
so has part: feature:660631-660764:1:exon
so has part: feature:662051-662171:1:exon
so has part: feature:665661-665707:1:exon
so has part: feature:671840-671947:1:exon
so has part: feature:672187-672242:1:exon
so has part: feature:672732-672819:1:exon
so has part: feature:673730-673849:1:exon
so has part: feature:675638-675735:1:exon
so has part: feature:682238-682356:1:exon
so has part: feature:684085-684218:1:exon
so has part: feature:687875-687959:1:exon
so has part: feature:689148-689494:1:exon

XP_005048971.2
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:537827-537848:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:582890-582961:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:606118-606362:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:619869-620019:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:622961-623081:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:628329-628450:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:636481-636621:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:638481-638593:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:642189-642305:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:644423-644621:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:646992-647206:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:653140-653391:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:654631-654817:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:660631-660764:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:662051-662171:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:665661-665707:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:671840-671947:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:672187-672242:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:672732-672819:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:673730-673849:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:675638-675735:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:682238-682356:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:684085-684218:1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:687875-687959:1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:689148-689494:1:exon

HDAC4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59894
gene: HDAC4
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: histone deacetylase 4 isoform X3
translation: MPSSVDVSTALPLQVAPSSVPMDLRLDHQFSMPVTEPTLREQQLQQELLALKQKQQIQRQILIAEFQRQHEQLSRQHEAQLHEHIKQQQEMLAMKHQQELLEHQRKLEQHRQEQELEKQHREQKLQQLKNKEKGKESAVASTEVKMKLQEFVLNKKKALAHRNLNHCISSDPRFWYGKTQHSSLDQSSPPQSGVSGTYNHPVLGMYDSKDDFPLRKTASEPNLKLRSRLKQKVAERRSSPLLRRKDGPVVTALKKRPLDVTGTADSACNSAPGSGPSSPNNSSNNISTENGIAGSVTSIQAETSLAHRLVNREGSVTQLPLYTSPSLPNITLGLPATGPSSAGQAQQDAERLAIPTLQQRISLFPGTHLTPYLSTTTLERDGGTAHNPLLQHMVLLEQPTAQTPLVTDWYLSGLPLHAQPLVGGERVSPSIHKLRQHRPLGRTQSAPLPQNAQALQQLVIQQQHQQFLEKHKQQFQQQQLHINKIISKPAEPARQHESHPEETEEELREHQALLEEPYGERGQKEPPGLASVVQVKQEPIESDEEEAEPQQELEAGQRQAEQELLFRQQALLLEQQRIHQLRNYQASLEAAGMPVSFGGHRPLSRAQSSPASATFPMSVQEPPTKPRFTTGLVYDTLMLKHQCTCGNTNSHPEHAGRIQSIWSRLQETGLRGKCECIRGRKATLEELQTVHSEAHTLLYGTNPLNRQKLDSKKLLGSLTSMFVRLPCGGVGVDSDTIWNEVHSSGAARLAVGCVIELVFKVATGELKNGFAVVRPPGHHAEESTPMGFCYFNSVAIAAKLLQQRLNVSKILIVDWDVHHGNGTQQAFYNDPNVLYISLHRYDDGNFFPGSGAPDEVGTGAGVGFNVNMAFTGGLDPPMGDTEYLTAFRTVVMPIANEFAPDVVLVSSGFDAVEGHPTPLGGYNLSAKCFGYLTKQLMGLAGGRVVLALEGGHDLTAICDASEACVSALLGNELDPLPEKVFQQRANANAVHSMEKVIEIHSKYWHSLQRFASTVGYSLVEAQKCENEEAETVTAMASLSVGVKPAEKRSVVSLHISRSAQAGGAALQVNPLLSVTATASPTSPVLCGGFPKPSWAAGEQQSHKLCACTLCLSLLL
SIO_010081: HDAC4
subclass of: SO_0000673
so part of: HDAC4
location: join(582949..582961,606118..606362,619869..620019,622961..623081,628329..628450,636481..636621,638481..638593,642189..642305,644423..644621,646977..647206,653140..653391,654631..654817,660631..660764,662051..662171,665661..665707,671840..671947,672187..672242,672732..672819,673730..673849,675638..675735,682238..682356,684085..684218,687875..687959,689148..689494)
location: region:582949-689494:1
so has part: feature:582949-582961:1:exon
so has part: feature:606118-606362:1:exon
so has part: feature:619869-620019:1:exon
so has part: feature:622961-623081:1:exon
so has part: feature:628329-628450:1:exon
so has part: feature:636481-636621:1:exon
so has part: feature:638481-638593:1:exon
so has part: feature:642189-642305:1:exon
so has part: feature:644423-644621:1:exon
so has part: feature:646977-647206:1:exon
so has part: feature:653140-653391:1:exon
so has part: feature:654631-654817:1:exon
so has part: feature:660631-660764:1:exon
so has part: feature:662051-662171:1:exon
so has part: feature:665661-665707:1:exon
so has part: feature:671840-671947:1:exon
so has part: feature:672187-672242:1:exon
so has part: feature:672732-672819:1:exon
so has part: feature:673730-673849:1:exon
so has part: feature:675638-675735:1:exon
so has part: feature:682238-682356:1:exon
so has part: feature:684085-684218:1:exon
so has part: feature:687875-687959:1:exon
so has part: feature:689148-689494:1:exon

XP_005048969.2
type: Protein
SIO_000068: ncbiprotein

position:582949:1
position: 582949
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:582949-582961:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:606118-606362:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:619869-620019:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:622961-623081:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:628329-628450:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:636481-636621:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:638481-638593:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:642189-642305:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:644423-644621:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:646977-647206:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:653140-653391:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:654631-654817:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:660631-660764:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:662051-662171:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:665661-665707:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:671840-671947:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:672187-672242:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:672732-672819:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:673730-673849:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:675638-675735:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:682238-682356:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:684085-684218:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:687875-687959:1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:689148-689494:1:exon

LOC107603736
type: Gene
subclass of: SO_0000704
RO_0002162: 59894
gene: LOC107603736
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 690581..709983
location: region:690581-709983:1
so has part: feature:690581-709983:1:exon

107603736
type: Gene
SIO_000068: ncbigene

position:690581:1
position: 690581
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:709983:1
position: 709983
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:690581-709983:1:exon

LOC107603736
type: Exon
subclass of: SO_0000147
RO_0002162: 59894
gene: LOC107603736
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 81% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC107603736
subclass of: SO_0000673
so part of: LOC107603736
location: 690581..693833
location: region:690581-693833:1
so has part: feature:690581-693833:1:exon

position:693833:1
position: 693833
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:690581-693833:1:exon

LOC107603736
type: Exon
subclass of: SO_0000147
RO_0002162: 59894
gene: LOC107603736
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 81% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC107603736
subclass of: SO_0000673
so part of: LOC107603736
location: 694037..695202
location: region:694037-695202:1
so has part: feature:694037-695202:1:exon

position:694037:1
position: 694037
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:695202:1
position: 695202
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:694037-695202:1:exon

LOC107603736
type: Exon
subclass of: SO_0000147
RO_0002162: 59894
gene: LOC107603736
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 81% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC107603736
subclass of: SO_0000673
so part of: LOC107603736
location: 707983..708060
location: region:707983-708060:1
so has part: feature:707983-708060:1:exon

position:707983:1
position: 707983
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:708060:1
position: 708060
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:707983-708060:1:exon

LOC107603736
type: Exon
subclass of: SO_0000147
RO_0002162: 59894
gene: LOC107603736
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 81% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC107603736
subclass of: SO_0000673
so part of: LOC107603736
location: 709501..709570
location: region:709501-709570:1
so has part: feature:709501-709570:1:exon

position:709501:1
position: 709501
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:709570:1
position: 709570
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:709501-709570:1:exon

LOC107603736
type: Exon
subclass of: SO_0000147
RO_0002162: 59894
gene: LOC107603736
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 81% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC107603736
subclass of: SO_0000673
so part of: LOC107603736
location: 709906..709983
location: region:709906-709983:1
so has part: feature:709906-709983:1:exon

position:709906:1
position: 709906
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:709906-709983:1:exon

TWIST2
type: Gene
subclass of: SO_0000704
RO_0002162: 59894
gene: TWIST2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(712333..744937)
location: region:712333-744937:-1
so has part: feature:712333-744937:-1:exon
subclass of: SO_0000010

101816458
type: Gene
SIO_000068: ncbigene

position:712333:-1
position: 712333
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:744937:-1
position: 744937
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:712333-744937:-1:exon

TWIST2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59894
gene: TWIST2
product: twist family bHLH transcription factor 2, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XM_005048911.2
SIO_010081: TWIST2
subclass of: SO_0000673
so part of: TWIST2
location: complement(join(712333..712380,744280..744937))
location: region:712333-744937:-1
so has part: feature:744280-744937:-1:exon
so has part: feature:712333-712380:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:744280-744937:-1:exon

position:744280:-1
position: 744280
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:712333-712380:-1:exon

position:712380:-1
position: 712380
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

TWIST2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59894
gene: TWIST2
product: twist family bHLH transcription factor 2, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 17 samples with support for all annotated introns
transcript id: XM_005048910.1
SIO_010081: TWIST2
subclass of: SO_0000673
so part of: TWIST2
location: complement(join(718786..719578,744280..744937))
location: region:718786-744937:-1
so has part: feature:744280-744937:-1:exon
so has part: feature:718786-719578:-1:exon

position:718786:-1
position: 718786
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:744280-744937:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:718786-719578:-1:exon

position:719578:-1
position: 719578
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

TWIST2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59894
gene: TWIST2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: twist-related protein 2
translation: MEESSSSPVSPVDSLGTSEEELERQPKRFGRKRRYSKKSSEDGSPNPGKRGKKSSPSSQSYEELQSQRILANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQVLQSDEMDSKMTSCSYVAHERLSYAFSVWRMEGAWSMSASH
SIO_010081: TWIST2
subclass of: SO_0000673
so part of: TWIST2
location: complement(744309..744791)
location: region:744309-744791:-1
so has part: feature:744309-744791:-1:exon

XP_005048967.1
type: Protein
SIO_000068: ncbiprotein

position:744309:-1
position: 744309
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:744791:-1
position: 744791
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:744309-744791:-1:exon

TWIST2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59894
gene: TWIST2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: twist-related protein 2
translation: MEESSSSPVSPVDSLGTSEEELERQPKRFGRKRRYSKKSSEDGSPNPGKRGKKSSPSSQSYEELQSQRILANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQVLQSDEMDSKMTSCSYVAHERLSYAFSVWRMEGAWSMSASH
SIO_010081: TWIST2
subclass of: SO_0000673
so part of: TWIST2
location: complement(744309..744791)
location: region:744309-744791:-1
so has part: feature:744309-744791:-1:exon

XP_005048968.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:744309-744791:-1:exon

ASB1
type: Gene
subclass of: SO_0000704
RO_0002162: 59894
gene: ASB1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(880071..891818)
location: region:880071-891818:-1
so has part: feature:880071-891818:-1:exon
subclass of: SO_0000010

101816253
type: Gene
SIO_000068: ncbigene

position:880071:-1
position: 880071
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:891818:-1
position: 891818
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:880071-891818:-1:exon

ASB1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59894
gene: ASB1
product: ankyrin repeat and SOCS box containing 1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_005048909.1
SIO_010081: ASB1
subclass of: SO_0000673
so part of: ASB1
location: complement(join(880071..882497,883861..884246,887740..888046,891557..891699,891779..891818))
location: region:880071-891818:-1
so has part: feature:891779-891818:-1:exon
so has part: feature:891557-891699:-1:exon
so has part: feature:887740-888046:-1:exon
so has part: feature:883861-884246:-1:exon
so has part: feature:880071-882497:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:891779-891818:-1:exon

position:891779:-1
position: 891779
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:891557-891699:-1:exon

position:891557:-1
position: 891557
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:891699:-1
position: 891699
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:887740-888046:-1:exon

position:887740:-1
position: 887740
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:888046:-1
position: 888046
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:883861-884246:-1:exon

position:883861:-1
position: 883861
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:884246:-1
position: 884246
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:880071-882497:-1:exon

position:882497:-1
position: 882497
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

ASB1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59894
gene: ASB1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ankyrin repeat and SOCS box protein 1
translation: MAEGGGAPAPGSAGRNLKEWLREQFCDHPLEHCEDTRLHDAAFVGDLPTLRSLRSDPPPRSRINEKSVWCCGWLPCTPLRIAATAGHGPCVDFLLRKGAEIDLVDVKGQTALYVAVVNGHLECARILLEAGADPNGSRHHRSTPVYHAARVGRADILQELIRYGADVDVNHQPASRGPGQALRPLTTLVVCPLYISAAYHNLPCFRLLLQAGAHPDFNCWGPVDVRGFSRGSPVCVLEAVLRHGCEPAFVRLLVDFGADLNLVKAEALGAEAAGRVRVNAEALEVFKEARGRARSLLSLCRIAVRRILGKSRLHLIRSLPVPDPIKQFLLHEHS
SIO_010081: ASB1
subclass of: SO_0000673
so part of: ASB1
location: complement(join(882364..882497,883861..884246,887740..888046,891557..891699,891779..891813))
location: region:882364-891813:-1
so has part: feature:891779-891813:-1:exon
so has part: feature:891557-891699:-1:exon
so has part: feature:887740-888046:-1:exon
so has part: feature:883861-884246:-1:exon
so has part: feature:882364-882497:-1:exon

XP_005048966.1
type: Protein
SIO_000068: ncbiprotein

position:882364:-1
position: 882364
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:891813:-1
position: 891813
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:891779-891813:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:891557-891699:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:887740-888046:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:883861-884246:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:882364-882497:-1:exon

TRAF3IP1
type: Gene
subclass of: SO_0000704
RO_0002162: 59894
gene: TRAF3IP1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(915454..944829)
location: region:915454-944829:-1
so has part: feature:915454-944829:-1:exon
subclass of: SO_0000010

101815788
type: Gene
SIO_000068: ncbigene

position:915454:-1
position: 915454
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:944829:-1
position: 944829
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:915454-944829:-1:exon

TRAF3IP1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59894
gene: TRAF3IP1
product: TRAF3 interacting protein 1, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
transcript id: XM_005048906.2
SIO_010081: TRAF3IP1
subclass of: SO_0000673
so part of: TRAF3IP1
location: complement(join(915454..915846,918132..918355,929763..929839,930370..930406,930892..931003,931287..931370,931763..931844,933539..933637,935525..935600,940227..940304,940961..941407,941554..941694,942525..942686,943981..944049,944622..944829))
location: region:915454-944829:-1
so has part: feature:944622-944829:-1:exon
so has part: feature:943981-944049:-1:exon
so has part: feature:942525-942686:-1:exon
so has part: feature:941554-941694:-1:exon
so has part: feature:940961-941407:-1:exon
so has part: feature:940227-940304:-1:exon
so has part: feature:935525-935600:-1:exon
so has part: feature:933539-933637:-1:exon
so has part: feature:931763-931844:-1:exon
so has part: feature:931287-931370:-1:exon
so has part: feature:930892-931003:-1:exon
so has part: feature:930370-930406:-1:exon
so has part: feature:929763-929839:-1:exon
so has part: feature:918132-918355:-1:exon
so has part: feature:915454-915846:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:944622-944829:-1:exon

position:944622:-1
position: 944622
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:943981-944049:-1:exon

position:943981:-1
position: 943981
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:944049:-1
position: 944049
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:942525-942686:-1:exon

position:942525:-1
position: 942525
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:942686:-1
position: 942686
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:941554-941694:-1:exon

position:941554:-1
position: 941554
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:941694:-1
position: 941694
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:940961-941407:-1:exon

position:940961:-1
position: 940961
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:941407:-1
position: 941407
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:940227-940304:-1:exon

position:940227:-1
position: 940227
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:940304:-1
position: 940304
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:935525-935600:-1:exon

position:935525:-1
position: 935525
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:935600:-1
position: 935600
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:933539-933637:-1:exon

position:933539:-1
position: 933539
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:933637:-1
position: 933637
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:931763-931844:-1:exon

position:931763:-1
position: 931763
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:931844:-1
position: 931844
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:931287-931370:-1:exon

position:931287:-1
position: 931287
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:931370:-1
position: 931370
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:930892-931003:-1:exon

position:930892:-1
position: 930892
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:931003:-1
position: 931003
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:930370-930406:-1:exon

position:930370:-1
position: 930370
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:930406:-1
position: 930406
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:929763-929839:-1:exon

position:929763:-1
position: 929763
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:929839:-1
position: 929839
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:918132-918355:-1:exon

position:918132:-1
position: 918132
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:918355:-1
position: 918355
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:915454-915846:-1:exon

position:915846:-1
position: 915846
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

TRAF3IP1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59894
gene: TRAF3IP1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: TRAF3-interacting protein 1 isoform X1
translation: MNEAVSRQTRETLGQVIRKPPLTDALLSKPPFRYLHDLISEVIRVTGFLKGLYTDFELKSDNVKDKDSKINFLQKAIDAVVMVTGEPLSVKPARVVAGHEPEKTNEFLQAIGKCCLNKLSSDAAVKKVLAGEKADVKGKPPPSKPRDKESREPKAEEQKTHRNKESRRDTEIKDRSPSRDRKPKGDLKESREREKEKDKKKNNEEKHKEPERDTSKEGQKQERERSKSRTAKQGREIEKTKGKGDPELRGDSGQDKGKEREKRHEEGREKDRLKGRDKNRDREGEKDRERGRDRDREKDGEHFREHGKEKAEKKPSDSEESMLRKPQRPTKDSKCQPDTENETPARISEQPSAKGSRHRSKPGGEGAVDTRSVADGISEDGAAELQEKNEPGLAEKLKEREVENVAPEKPENGEAPPDVPPQPAQRRIPRPGSARPAPPRVKRQESTELLIPERSGSARTTPNVIREQQVSDEEDEQFVVESAVPLPEMPKETEVELLEDQKHGGLVKRILETKKDYEASQKSSQTTDREKPVVLEASRKKERDLVAKEIEKFQVSIQTVCQNAFRLGRIVDYIQEDMDAMRNELHTWRQENREHAEALQREQSITDSAVEPLKADLAELEQLIKDQQDKICAVKANILRNEEKIQRMVLSINLSSRR
SIO_010081: TRAF3IP1
subclass of: SO_0000673
so part of: TRAF3IP1
location: complement(join(915681..915846,918132..918355,929763..929839,930370..930406,930892..931003,931287..931370,931763..931844,933539..933637,935525..935600,940227..940304,940961..941407,941554..941694,942525..942686,943981..944049,944622..944744))
location: region:915681-944744:-1
so has part: feature:944622-944744:-1:exon
so has part: feature:943981-944049:-1:exon
so has part: feature:942525-942686:-1:exon
so has part: feature:941554-941694:-1:exon
so has part: feature:940961-941407:-1:exon
so has part: feature:940227-940304:-1:exon
so has part: feature:935525-935600:-1:exon
so has part: feature:933539-933637:-1:exon
so has part: feature:931763-931844:-1:exon
so has part: feature:931287-931370:-1:exon
so has part: feature:930892-931003:-1:exon
so has part: feature:930370-930406:-1:exon
so has part: feature:929763-929839:-1:exon
so has part: feature:918132-918355:-1:exon
so has part: feature:915681-915846:-1:exon

XP_005048963.1
type: Protein
SIO_000068: ncbiprotein

position:915681:-1
position: 915681
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:944744:-1
position: 944744
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:944622-944744:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:943981-944049:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:942525-942686:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:941554-941694:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:940961-941407:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:940227-940304:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:935525-935600:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:933539-933637:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:931763-931844:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:931287-931370:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:930892-931003:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:930370-930406:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:929763-929839:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:918132-918355:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:915681-915846:-1:exon

TRAF3IP1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59894
gene: TRAF3IP1
product: TRAF3 interacting protein 1, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns
transcript id: XM_005048908.2
SIO_010081: TRAF3IP1
subclass of: SO_0000673
so part of: TRAF3IP1
location: complement(join(927795..927928,929763..929839,930370..930406,930892..931003,931287..931370,931763..931844,933539..933637,935525..935600,940227..940304,940961..941407,941554..941694,942525..942686,943981..944049,944622..944829))
location: region:927795-944829:-1
so has part: feature:944622-944829:-1:exon
so has part: feature:943981-944049:-1:exon
so has part: feature:942525-942686:-1:exon
so has part: feature:941554-941694:-1:exon
so has part: feature:940961-941407:-1:exon
so has part: feature:940227-940304:-1:exon
so has part: feature:935525-935600:-1:exon
so has part: feature:933539-933637:-1:exon
so has part: feature:931763-931844:-1:exon
so has part: feature:931287-931370:-1:exon
so has part: feature:930892-931003:-1:exon
so has part: feature:930370-930406:-1:exon
so has part: feature:929763-929839:-1:exon
so has part: feature:927795-927928:-1:exon

position:927795:-1
position: 927795
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:944622-944829:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:943981-944049:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:942525-942686:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:941554-941694:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:940961-941407:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:940227-940304:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:935525-935600:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:933539-933637:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:931763-931844:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:931287-931370:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:930892-931003:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:930370-930406:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:929763-929839:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:927795-927928:-1:exon

position:927928:-1
position: 927928
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

TRAF3IP1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59894
gene: TRAF3IP1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: TRAF3-interacting protein 1 isoform X2
translation: MNEAVSRQTRETLGQVIRKPPLTDALLSKPPFRYLHDLISEVIRVTGFLKGLYTDFELKSDNVKDKDSKINFLQKAIDAVVMVTGEPLSVKPARVVAGHEPEKTNEFLQAIGKCCLNKLSSDAAVKKVLAGEKADVKGKPPPSKPRDKESREPKAEEQKTHRNKESRRDTEIKDRSPSRDRKPKGDLKESREREKEKDKKKNNEEKHKEPERDTSKEGQKQERERSKSRTAKQGREIEKTKGKGDPELRGDSGQDKGKEREKRHEEGREKDRLKGRDKNRDREGEKDRERGRDRDREKDGEHFREHGKEKAEKKPSDSEESMLRKPQRPTKDSKCQPDTENETPARISEQPSAKGSRHRSKPGGEGAVDTRSVADGISEDGAAELQEKNEPGLAEKLKEREVENVAPEKPENGEAPPDVPPQPAQRRIPRPGSARPAPPRVKRQESTELLIPERSGSARTTPNVIREQQVSDEEDEQFVVESAVPLPEMPKETEVELLEDQKHGGLVKRILETKKDYEASQKSSQTTDRF
SIO_010081: TRAF3IP1
subclass of: SO_0000673
so part of: TRAF3IP1
location: complement(join(927923..927928,929763..929839,930370..930406,930892..931003,931287..931370,931763..931844,933539..933637,935525..935600,940227..940304,940961..941407,941554..941694,942525..942686,943981..944049,944622..944744))
location: region:927923-944744:-1
so has part: feature:944622-944744:-1:exon
so has part: feature:943981-944049:-1:exon
so has part: feature:942525-942686:-1:exon
so has part: feature:941554-941694:-1:exon
so has part: feature:940961-941407:-1:exon
so has part: feature:940227-940304:-1:exon
so has part: feature:935525-935600:-1:exon
so has part: feature:933539-933637:-1:exon
so has part: feature:931763-931844:-1:exon
so has part: feature:931287-931370:-1:exon
so has part: feature:930892-931003:-1:exon
so has part: feature:930370-930406:-1:exon
so has part: feature:929763-929839:-1:exon
so has part: feature:927923-927928:-1:exon

XP_005048965.1
type: Protein
SIO_000068: ncbiprotein

position:927923:-1
position: 927923
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:944622-944744:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:943981-944049:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:942525-942686:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:941554-941694:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:940961-941407:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:940227-940304:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:935525-935600:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:933539-933637:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:931763-931844:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:931287-931370:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:930892-931003:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:930370-930406:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:929763-929839:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:927923-927928:-1:exon

USP40
type: Gene
subclass of: SO_0000704
RO_0002162: 59894
gene: USP40
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(948784..973377)
location: region:948784-973377:-1
so has part: feature:948784-973377:-1:exon
subclass of: SO_0000010

101815337
type: Gene
SIO_000068: ncbigene

position:948784:-1
position: 948784
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:973377:-1
position: 973377
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:948784-973377:-1:exon

USP40
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59894
gene: USP40
product: ubiquitin specific peptidase 40, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
transcript id: XM_005048904.2
SIO_010081: USP40
subclass of: SO_0000673
so part of: USP40
location: complement(join(948784..950095,950593..950687,951507..951602,951726..951936,952153..952218,952683..952801,953919..954013,955120..955246,956331..956405,956494..956558,957038..957074,957539..957625,958040..958128,958548..958601,958865..958922,959252..959378,959836..960155,961104..961174,961988..962072,962557..962728,963541..963622,964037..964358,964988..965095,965621..965722,965957..966085,967058..967201,968770..968916,969386..969550,970356..970469,971660..971727,971956..972172,972476..973376))
location: region:948784-973376:-1
so has part: feature:972476-973376:-1:exon
so has part: feature:971956-972172:-1:exon
so has part: feature:971660-971727:-1:exon
so has part: feature:970356-970469:-1:exon
so has part: feature:969386-969550:-1:exon
so has part: feature:968770-968916:-1:exon
so has part: feature:967058-967201:-1:exon
so has part: feature:965957-966085:-1:exon
so has part: feature:965621-965722:-1:exon
so has part: feature:964988-965095:-1:exon
so has part: feature:964037-964358:-1:exon
so has part: feature:963541-963622:-1:exon
so has part: feature:962557-962728:-1:exon
so has part: feature:961988-962072:-1:exon
so has part: feature:961104-961174:-1:exon
so has part: feature:959836-960155:-1:exon
so has part: feature:959252-959378:-1:exon
so has part: feature:958865-958922:-1:exon
so has part: feature:958548-958601:-1:exon
so has part: feature:958040-958128:-1:exon
so has part: feature:957539-957625:-1:exon
so has part: feature:957038-957074:-1:exon
so has part: feature:956494-956558:-1:exon
so has part: feature:956331-956405:-1:exon
so has part: feature:955120-955246:-1:exon
so has part: feature:953919-954013:-1:exon
so has part: feature:952683-952801:-1:exon
so has part: feature:952153-952218:-1:exon
so has part: feature:951726-951936:-1:exon
so has part: feature:951507-951602:-1:exon
so has part: feature:950593-950687:-1:exon
so has part: feature:948784-950095:-1:exon

position:973376:-1
position: 973376
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:972476-973376:-1:exon

position:972476:-1
position: 972476
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:971956-972172:-1:exon

position:971956:-1
position: 971956
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:972172:-1
position: 972172
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:971660-971727:-1:exon

position:971660:-1
position: 971660
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:971727:-1
position: 971727
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:970356-970469:-1:exon

position:970356:-1
position: 970356
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:970469:-1
position: 970469
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:969386-969550:-1:exon

position:969386:-1
position: 969386
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:969550:-1
position: 969550
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:968770-968916:-1:exon

position:968770:-1
position: 968770
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:968916:-1
position: 968916
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:967058-967201:-1:exon

position:967058:-1
position: 967058
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:967201:-1
position: 967201
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:965957-966085:-1:exon

position:965957:-1
position: 965957
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:966085:-1
position: 966085
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:965621-965722:-1:exon

position:965621:-1
position: 965621
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:965722:-1
position: 965722
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:964988-965095:-1:exon

position:964988:-1
position: 964988
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:965095:-1
position: 965095
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:964037-964358:-1:exon

position:964037:-1
position: 964037
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:964358:-1
position: 964358
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:963541-963622:-1:exon

position:963541:-1
position: 963541
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:963622:-1
position: 963622
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:962557-962728:-1:exon

position:962557:-1
position: 962557
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:962728:-1
position: 962728
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:961988-962072:-1:exon

position:961988:-1
position: 961988
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:962072:-1
position: 962072
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:961104-961174:-1:exon

position:961104:-1
position: 961104
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:961174:-1
position: 961174
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:959836-960155:-1:exon

position:959836:-1
position: 959836
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:960155:-1
position: 960155
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:959252-959378:-1:exon

position:959252:-1
position: 959252
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:959378:-1
position: 959378
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:958865-958922:-1:exon

position:958865:-1
position: 958865
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:958922:-1
position: 958922
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:958548-958601:-1:exon

position:958548:-1
position: 958548
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:958601:-1
position: 958601
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:958040-958128:-1:exon

position:958040:-1
position: 958040
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:958128:-1
position: 958128
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:957539-957625:-1:exon

position:957539:-1
position: 957539
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:957625:-1
position: 957625
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 22
SIO_000628: feature:957038-957074:-1:exon

position:957038:-1
position: 957038
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:957074:-1
position: 957074
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 23
SIO_000628: feature:956494-956558:-1:exon

position:956494:-1
position: 956494
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:956558:-1
position: 956558
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 24
SIO_000628: feature:956331-956405:-1:exon

position:956331:-1
position: 956331
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:956405:-1
position: 956405
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 25
SIO_000628: feature:955120-955246:-1:exon

position:955120:-1
position: 955120
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:955246:-1
position: 955246
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 26
SIO_000628: feature:953919-954013:-1:exon

position:953919:-1
position: 953919
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:954013:-1
position: 954013
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 27
SIO_000628: feature:952683-952801:-1:exon

position:952683:-1
position: 952683
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:952801:-1
position: 952801
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 28
SIO_000628: feature:952153-952218:-1:exon

position:952153:-1
position: 952153
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:952218:-1
position: 952218
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 29
SIO_000628: feature:951726-951936:-1:exon

position:951726:-1
position: 951726
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:951936:-1
position: 951936
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 30
SIO_000628: feature:951507-951602:-1:exon

position:951507:-1
position: 951507
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:951602:-1
position: 951602
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 31
SIO_000628: feature:950593-950687:-1:exon

position:950593:-1
position: 950593
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:950687:-1
position: 950687
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 32
SIO_000628: feature:948784-950095:-1:exon

position:950095:-1
position: 950095
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

USP40
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59894
gene: USP40
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ubiquitin carboxyl-terminal hydrolase 40 isoform X1
translation: MFGDLFEEDFSFISNNHCGKGKKSKPRESEPPAPRDFTNLSGIKNQGGTCYLNSLLQTLLFTPEFREALFSLGPEELGTLDDSRKPDAKVRIIPLQLQRLFAQLLLLDQQAASTTDLTESFGWSSQEEMRQHDVQELNRILFSALETSLVGTSGHDLINRLYHGIVVNQIVCKECKNVSERQEDFLDLTVAVKGMAGLEEALWNMYVEEEYFENDNLYRCGACDKLVEASKSAKLRKLPPFLTISLLRFNFDFEKCERYKETSCYTFPTQINLRPFCEQTEMDDSEYMYELFSVIIHKGGCYGGHYHVYIRDVDELGNWQLQEEEDGLIEEKVLRDTENAKETENPLAVLKGILSEEEAKQIAVDQLGQKLLEKKGVSWNKKYRKQYGALRKYLQNHPQIFQLSPDGNKVSLKETHKLLFKLDSHGQNLQSPSQKNDVQWNCEKTPPRPMASSAGCHWFDLNDCKVQPIKEKDIEKQFQGKESAYMLFYRKAQLKRPPEAHGNPRYQIPAHLLNEMNAANTELQKKRAECDSANNGIDLHLHLSCCYKFHNGALHPSLSWKESVVDLTIDRRKTLGDLRHAVFQMLESWEGDMVLSMAKPLPAGLHLYQVLDGDELSLDGIGLADGADIFVWNGKEVGGTKVLTGPEHEPVVLNVLRLAEHNEGGKGQHFSEAQLVFSCSTSLGQLHSALAPAGGIILKNGSGADTEAKNWEVFHEEDMKETVRSVGLRDGCSVLILDSHDQSFVNVASGNLTAFTYDISWLQVKNFCGVGEEEKHVKITATIETVMSDIKMKAIREFQLEEELANESCLRPVSGNGKLLSPVPEDYTVKEAELKMGSLLGLCRGKAPTSTQLFLYFMVGSDQNCSPEMEIVVEETASVRECLNLMLEKSGLSGDNWHLRRLDWCYEAGEALSQENATLKELNVCRGDTLVITEGKLPEKGFLKIPIWWLKPSSHKKHGEHAQDQVNGITWKMEALQVSAAAAPPEPTHPGLDLCYAGRIEIAAEAPLEELKMQALTLPCFQEQVVPLPSFLRAWTVDSKRPGKLLRDNKRRLSDYRLGARVEICIEPLQEEENLGPQELLLRVQMGIPGERDYSDSWDLVWDISKECTTWALRQRVASHYCLPVDKIEIAKYFPERFEWLPISSWTQQISKRKRRKKQENLQSAPYHLKDGDIIGVKNLILDDTKDFSTVRDDIGKEKQRQLALEKRKSRQERVQDPFFPEEKLPMKPRKPEVALSINVGVFR
SIO_010081: USP40
subclass of: SO_0000673
so part of: USP40
location: complement(join(949990..950095,950593..950687,951507..951602,951726..951936,952153..952218,952683..952801,953919..954013,955120..955246,956331..956405,956494..956558,957038..957074,957539..957625,958040..958128,958548..958601,958865..958922,959252..959378,959836..960155,961104..961174,961988..962072,962557..962728,963541..963622,964037..964358,964988..965095,965621..965722,965957..966085,967058..967201,968770..968916,969386..969550,970356..970469,971660..971727,971956..972154))
location: region:949990-972154:-1
so has part: feature:971956-972154:-1:exon
so has part: feature:971660-971727:-1:exon
so has part: feature:970356-970469:-1:exon
so has part: feature:969386-969550:-1:exon
so has part: feature:968770-968916:-1:exon
so has part: feature:967058-967201:-1:exon
so has part: feature:965957-966085:-1:exon
so has part: feature:965621-965722:-1:exon
so has part: feature:964988-965095:-1:exon
so has part: feature:964037-964358:-1:exon
so has part: feature:963541-963622:-1:exon
so has part: feature:962557-962728:-1:exon
so has part: feature:961988-962072:-1:exon
so has part: feature:961104-961174:-1:exon
so has part: feature:959836-960155:-1:exon
so has part: feature:959252-959378:-1:exon
so has part: feature:958865-958922:-1:exon
so has part: feature:958548-958601:-1:exon
so has part: feature:958040-958128:-1:exon
so has part: feature:957539-957625:-1:exon
so has part: feature:957038-957074:-1:exon
so has part: feature:956494-956558:-1:exon
so has part: feature:956331-956405:-1:exon
so has part: feature:955120-955246:-1:exon
so has part: feature:953919-954013:-1:exon
so has part: feature:952683-952801:-1:exon
so has part: feature:952153-952218:-1:exon
so has part: feature:951726-951936:-1:exon
so has part: feature:951507-951602:-1:exon
so has part: feature:950593-950687:-1:exon
so has part: feature:949990-950095:-1:exon

XP_005048961.1
type: Protein
SIO_000068: ncbiprotein

position:949990:-1
position: 949990
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:972154:-1
position: 972154
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:971956-972154:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:971660-971727:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:970356-970469:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:969386-969550:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:968770-968916:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:967058-967201:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:965957-966085:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:965621-965722:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:964988-965095:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:964037-964358:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:963541-963622:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:962557-962728:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:961988-962072:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:961104-961174:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:959836-960155:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:959252-959378:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:958865-958922:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:958548-958601:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:958040-958128:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:957539-957625:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:957038-957074:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:956494-956558:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:956331-956405:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:955120-955246:-1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:953919-954013:-1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:952683-952801:-1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:952153-952218:-1:exon

urn:…
SIO_000300: 28
SIO_000628: feature:951726-951936:-1:exon

urn:…
SIO_000300: 29
SIO_000628: feature:951507-951602:-1:exon

urn:…
SIO_000300: 30
SIO_000628: feature:950593-950687:-1:exon

urn:…
SIO_000300: 31
SIO_000628: feature:949990-950095:-1:exon

USP40
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59894
gene: USP40
product: ubiquitin specific peptidase 40, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XM_005048905.2
SIO_010081: USP40
subclass of: SO_0000673
so part of: USP40
location: complement(join(952708..952801,953789..953823,953919..954013,955120..955246,956331..956405,956494..956558,957038..957074,957539..957625,958040..958128,958548..958601,958865..958922,959252..959378,959836..960155,961104..961174,961988..962072,962557..962728,963541..963622,964037..964358,964988..965095,965621..965722,965957..966085,967058..967201,968770..968916,969386..969550,970356..970469,971660..971727,971956..972172,972476..973377))
location: region:952708-973377:-1
so has part: feature:972476-973377:-1:exon
so has part: feature:971956-972172:-1:exon
so has part: feature:971660-971727:-1:exon
so has part: feature:970356-970469:-1:exon
so has part: feature:969386-969550:-1:exon
so has part: feature:968770-968916:-1:exon
so has part: feature:967058-967201:-1:exon
so has part: feature:965957-966085:-1:exon
so has part: feature:965621-965722:-1:exon
so has part: feature:964988-965095:-1:exon
so has part: feature:964037-964358:-1:exon
so has part: feature:963541-963622:-1:exon
so has part: feature:962557-962728:-1:exon
so has part: feature:961988-962072:-1:exon
so has part: feature:961104-961174:-1:exon
so has part: feature:959836-960155:-1:exon
so has part: feature:959252-959378:-1:exon
so has part: feature:958865-958922:-1:exon
so has part: feature:958548-958601:-1:exon
so has part: feature:958040-958128:-1:exon
so has part: feature:957539-957625:-1:exon
so has part: feature:957038-957074:-1:exon
so has part: feature:956494-956558:-1:exon
so has part: feature:956331-956405:-1:exon
so has part: feature:955120-955246:-1:exon
so has part: feature:953919-954013:-1:exon
so has part: feature:953789-953823:-1:exon
so has part: feature:952708-952801:-1:exon

position:952708:-1
position: 952708
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:972476-973377:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:971956-972172:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:971660-971727:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:970356-970469:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:969386-969550:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:968770-968916:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:967058-967201:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:965957-966085:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:965621-965722:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:964988-965095:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:964037-964358:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:963541-963622:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:962557-962728:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:961988-962072:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:961104-961174:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:959836-960155:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:959252-959378:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:958865-958922:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:958548-958601:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:958040-958128:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:957539-957625:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:957038-957074:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:956494-956558:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:956331-956405:-1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:955120-955246:-1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:953919-954013:-1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:953789-953823:-1:exon

position:953789:-1
position: 953789
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:953823:-1
position: 953823
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 28
SIO_000628: feature:952708-952801:-1:exon

USP40
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59894
gene: USP40
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ubiquitin carboxyl-terminal hydrolase 40 isoform X2
translation: MFGDLFEEDFSFISNNHCGKGKKSKPRESEPPAPRDFTNLSGIKNQGGTCYLNSLLQTLLFTPEFREALFSLGPEELGTLDDSRKPDAKVRIIPLQLQRLFAQLLLLDQQAASTTDLTESFGWSSQEEMRQHDVQELNRILFSALETSLVGTSGHDLINRLYHGIVVNQIVCKECKNVSERQEDFLDLTVAVKGMAGLEEALWNMYVEEEYFENDNLYRCGACDKLVEASKSAKLRKLPPFLTISLLRFNFDFEKCERYKETSCYTFPTQINLRPFCEQTEMDDSEYMYELFSVIIHKGGCYGGHYHVYIRDVDELGNWQLQEEEDGLIEEKVLRDTENAKETENPLAVLKGILSEEEAKQIAVDQLGQKLLEKKGVSWNKKYRKQYGALRKYLQNHPQIFQLSPDGNKVSLKETHKLLFKLDSHGQNLQSPSQKNDVQWNCEKTPPRPMASSAGCHWFDLNDCKVQPIKEKDIEKQFQGKESAYMLFYRKAQLKRPPEAHGNPRYQIPAHLLNEMNAANTELQKKRAECDSANNGIDLHLHLSCCYKFHNGALHPSLSWKESVVDLTIDRRKTLGDLRHAVFQMLESWEGDMVLSMAKPLPAGLHLYQVLDGDELSLDGIGLADGADIFVWNGKEVGGTKVLTGPEHEPVVLNVLRLAEHNEGGKGQHFSEAQLVFSCSTSLGQLHSALAPAGGIILKNGSGADTEAKNWEVFHEEDMKETVRSVGLRDGCSVLILDSHDQSFVNVASGNLTAFTYDISWLQVKNFCGVGEEEKHVKITATIETVMSDIKMKAIREFQLEEELANESCLRPVSGNGKLLSPVPEDYTVKEAELKMGSLLGLCRGKAPTSTQLFLYFMVGSDQNCSPEMEIVVEETASVRECLNLMLEKSGLSGDNWHLRRLDWCYEAGEALSQENATLKELNVCRGDTLVITEGKLPEKGFLKIPIWWLKPSSHKKHGEHAQDQVNGITWKMEALQVSAAAAPPEPTHPGLDLCYAGRIEIAAEAPLEELKMQSVVPWHLCHGHWL
SIO_010081: USP40
subclass of: SO_0000673
so part of: USP40
location: complement(join(952795..952801,953789..953823,953919..954013,955120..955246,956331..956405,956494..956558,957038..957074,957539..957625,958040..958128,958548..958601,958865..958922,959252..959378,959836..960155,961104..961174,961988..962072,962557..962728,963541..963622,964037..964358,964988..965095,965621..965722,965957..966085,967058..967201,968770..968916,969386..969550,970356..970469,971660..971727,971956..972154))
location: region:952795-972154:-1
so has part: feature:971956-972154:-1:exon
so has part: feature:971660-971727:-1:exon
so has part: feature:970356-970469:-1:exon
so has part: feature:969386-969550:-1:exon
so has part: feature:968770-968916:-1:exon
so has part: feature:967058-967201:-1:exon
so has part: feature:965957-966085:-1:exon
so has part: feature:965621-965722:-1:exon
so has part: feature:964988-965095:-1:exon
so has part: feature:964037-964358:-1:exon
so has part: feature:963541-963622:-1:exon
so has part: feature:962557-962728:-1:exon
so has part: feature:961988-962072:-1:exon
so has part: feature:961104-961174:-1:exon
so has part: feature:959836-960155:-1:exon
so has part: feature:959252-959378:-1:exon
so has part: feature:958865-958922:-1:exon
so has part: feature:958548-958601:-1:exon
so has part: feature:958040-958128:-1:exon
so has part: feature:957539-957625:-1:exon
so has part: feature:957038-957074:-1:exon
so has part: feature:956494-956558:-1:exon
so has part: feature:956331-956405:-1:exon
so has part: feature:955120-955246:-1:exon
so has part: feature:953919-954013:-1:exon
so has part: feature:953789-953823:-1:exon
so has part: feature:952795-952801:-1:exon

XP_005048962.1
type: Protein
SIO_000068: ncbiprotein

position:952795:-1
position: 952795
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:971956-972154:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:971660-971727:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:970356-970469:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:969386-969550:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:968770-968916:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:967058-967201:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:965957-966085:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:965621-965722:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:964988-965095:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:964037-964358:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:963541-963622:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:962557-962728:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:961988-962072:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:961104-961174:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:959836-960155:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:959252-959378:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:958865-958922:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:958548-958601:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:958040-958128:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:957539-957625:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:957038-957074:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:956494-956558:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:956331-956405:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:955120-955246:-1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:953919-954013:-1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:953789-953823:-1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:952795-952801:-1:exon

LOC101821535
type: Gene
subclass of: SO_0000704
RO_0002162: 59894
gene: LOC101821535
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 974263..980959
location: region:974263-980959:1
so has part: feature:974263-980959:1:exon
subclass of: SO_0000010

101821535
type: Gene
SIO_000068: ncbigene

position:974263:1
position: 974263
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:980959:1
position: 980959
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:974263-980959:1:exon

LOC101821535
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59894
gene: LOC101821535
product: UDP-glucuronosyltransferase 1-3-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 79% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_016299627.1
SIO_010081: LOC101821535
subclass of: SO_0000673
so part of: LOC101821535
location: join(974263..974388,977588..977728,978106..978864,980897..980959)
location: region:974263-980959:1
so has part: feature:974263-974388:1:exon
so has part: feature:977588-977728:1:exon
so has part: feature:978106-978864:1:exon
so has part: feature:980897-980959:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:974263-974388:1:exon

position:974388:1
position: 974388
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:977588-977728:1:exon

position:977588:1
position: 977588
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:977728:1
position: 977728
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:978106-978864:1:exon

position:978106:1
position: 978106
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:978864:1
position: 978864
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:980897-980959:1:exon

position:980897:1
position: 980897
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC101821535
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59894
gene: LOC101821535
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: UDP-glucuronosyltransferase 1-3-like
translation: MTDLLSHGSVWLRRIDFVFEYPMPVMPNMVFIGGIHCKPLAQATTCRSLFHSHYCDHSNMALRLCCAWISILLLLPGLSHGGKLLVVPMVGSHWLSMQEVVEELSRRGHEVVVLVPEVSWQMETTQAYKVVTYPVRQTLEELDNAFREYVAVHLTEKPFPLNALAMYKASVHVFSTFLGQCTDLFQSQETLRFLNQSHFDAVLTDPFFMCGAILAHHLSLPFVFFMRGLPCNLHFSAPQSPSPLSYVPRTFSFNSDRMTFFQRVENALISLLELDYCNGLYAEALKLSSEILQRDVSLTDLVNSAAVSILRFDFVFEYVRPVMPNMVFIGGINCAKKKPLPKERARERASTSNSPPPSFTCF
SIO_010081: LOC101821535
subclass of: SO_0000673
so part of: LOC101821535
location: join(974263..974388,977588..977728,978106..978864,980897..980959)
location: region:974263-980959:1
so has part: feature:974263-974388:1:exon
so has part: feature:977588-977728:1:exon
so has part: feature:978106-978864:1:exon
so has part: feature:980897-980959:1:exon

XP_016155113.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:974263-974388:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:977588-977728:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:978106-978864:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:980897-980959:1:exon

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 59894
estimated length: 5000
gap type: between scaffolds
so part of: sequence
location: 997962..1002961
location: region:997962-1002961:1
so has part: feature:997962-1002961:1:region

position:997962:1
position: 997962
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1002961:1
position: 1002961
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:997962-1002961:1:region

TRPM8
type: Gene
subclass of: SO_0000704
RO_0002162: 59894
gene: TRPM8
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(1008035..1042821)
location: region:1008035-1042821:-1
so has part: feature:1008035-1042821:-1:exon
subclass of: SO_0000010

101808218
type: Gene
SIO_000068: ncbigene

position:1008035:-1
position: 1008035
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1042821:-1
position: 1042821
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1008035-1042821:-1:exon

TRPM8
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59894
gene: TRPM8
product: transient receptor potential cation channel subfamily M member 8, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 79% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_005048946.1
SIO_010081: TRPM8
subclass of: SO_0000673
so part of: TRPM8
location: complement(join(1008035..1008104,1009394..1009480,1010414..1010447,1011802..1011901,1014002..1014192,1017004..1017181,1017353..1017524,1018189..1018327,1019052..1019143,1022812..1023028,1023585..1023697,1024165..1024310,1025310..1025439,1026760..1026855,1027185..1027475,1028309..1028427,1028974..1029076,1029876..1030073,1033537..1033604,1034511..1034685,1035282..1035454,1035784..1035961,1039955..1040111,1041003..1041076,1042732..1042821))
location: region:1008035-1042821:-1
so has part: feature:1042732-1042821:-1:exon
so has part: feature:1041003-1041076:-1:exon
so has part: feature:1039955-1040111:-1:exon
so has part: feature:1035784-1035961:-1:exon
so has part: feature:1035282-1035454:-1:exon
so has part: feature:1034511-1034685:-1:exon
so has part: feature:1033537-1033604:-1:exon
so has part: feature:1029876-1030073:-1:exon
so has part: feature:1028974-1029076:-1:exon
so has part: feature:1028309-1028427:-1:exon
so has part: feature:1027185-1027475:-1:exon
so has part: feature:1026760-1026855:-1:exon
so has part: feature:1025310-1025439:-1:exon
so has part: feature:1024165-1024310:-1:exon
so has part: feature:1023585-1023697:-1:exon
so has part: feature:1022812-1023028:-1:exon
so has part: feature:1019052-1019143:-1:exon
so has part: feature:1018189-1018327:-1:exon
so has part: feature:1017353-1017524:-1:exon
so has part: feature:1017004-1017181:-1:exon
so has part: feature:1014002-1014192:-1:exon
so has part: feature:1011802-1011901:-1:exon
so has part: feature:1010414-1010447:-1:exon
so has part: feature:1009394-1009480:-1:exon
so has part: feature:1008035-1008104:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1042732-1042821:-1:exon

position:1042732:-1
position: 1042732
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1041003-1041076:-1:exon

position:1041003:-1
position: 1041003
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1041076:-1
position: 1041076
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1039955-1040111:-1:exon

position:1039955:-1
position: 1039955
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1040111:-1
position: 1040111
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1035784-1035961:-1:exon

position:1035784:-1
position: 1035784
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1035961:-1
position: 1035961
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:1035282-1035454:-1:exon

position:1035282:-1
position: 1035282
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1035454:-1
position: 1035454
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:1034511-1034685:-1:exon

position:1034511:-1
position: 1034511
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1034685:-1
position: 1034685
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:1033537-1033604:-1:exon

position:1033537:-1
position: 1033537
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1033604:-1
position: 1033604
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:1029876-1030073:-1:exon

position:1029876:-1
position: 1029876
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1030073:-1
position: 1030073
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:1028974-1029076:-1:exon

position:1028974:-1
position: 1028974
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1029076:-1
position: 1029076
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:1028309-1028427:-1:exon

position:1028309:-1
position: 1028309
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1028427:-1
position: 1028427
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:1027185-1027475:-1:exon

position:1027185:-1
position: 1027185
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1027475:-1
position: 1027475
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:1026760-1026855:-1:exon

position:1026760:-1
position: 1026760
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1026855:-1
position: 1026855
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:1025310-1025439:-1:exon

position:1025310:-1
position: 1025310
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1025439:-1
position: 1025439
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:1024165-1024310:-1:exon

position:1024165:-1
position: 1024165
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1024310:-1
position: 1024310
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:1023585-1023697:-1:exon

position:1023585:-1
position: 1023585
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1023697:-1
position: 1023697
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:1022812-1023028:-1:exon

position:1022812:-1
position: 1022812
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1023028:-1
position: 1023028
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:1019052-1019143:-1:exon

position:1019052:-1
position: 1019052
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1019143:-1
position: 1019143
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:1018189-1018327:-1:exon

position:1018189:-1
position: 1018189
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1018327:-1
position: 1018327
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:1017353-1017524:-1:exon

position:1017353:-1
position: 1017353
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1017524:-1
position: 1017524
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:1017004-1017181:-1:exon

position:1017004:-1
position: 1017004
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1017181:-1
position: 1017181
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:1014002-1014192:-1:exon

position:1014002:-1
position: 1014002
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1014192:-1
position: 1014192
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 22
SIO_000628: feature:1011802-1011901:-1:exon

position:1011802:-1
position: 1011802
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1011901:-1
position: 1011901
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 23
SIO_000628: feature:1010414-1010447:-1:exon

position:1010414:-1
position: 1010414
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1010447:-1
position: 1010447
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 24
SIO_000628: feature:1009394-1009480:-1:exon

position:1009394:-1
position: 1009394
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1009480:-1
position: 1009480
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 25
SIO_000628: feature:1008035-1008104:-1:exon

position:1008104:-1
position: 1008104
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

TRPM8
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59894
gene: TRPM8
product: transient receptor potential cation channel subfamily M member 8, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 79% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_005048945.1
SIO_010081: TRPM8
subclass of: SO_0000673
so part of: TRPM8
location: complement(join(1009321..1009480,1010414..1010447,1011802..1011901,1014002..1014192,1017004..1017181,1017353..1017524,1018189..1018327,1019052..1019143,1022812..1023028,1023585..1023697,1024165..1024310,1025310..1025439,1026760..1026855,1027185..1027475,1028309..1028427,1028974..1029076,1029876..1030073,1033537..1033604,1034511..1034685,1035282..1035454,1035784..1035961,1039955..1040111,1041003..1041076,1042732..1042821))
location: region:1009321-1042821:-1
so has part: feature:1042732-1042821:-1:exon
so has part: feature:1041003-1041076:-1:exon
so has part: feature:1039955-1040111:-1:exon
so has part: feature:1035784-1035961:-1:exon
so has part: feature:1035282-1035454:-1:exon
so has part: feature:1034511-1034685:-1:exon
so has part: feature:1033537-1033604:-1:exon
so has part: feature:1029876-1030073:-1:exon
so has part: feature:1028974-1029076:-1:exon
so has part: feature:1028309-1028427:-1:exon
so has part: feature:1027185-1027475:-1:exon
so has part: feature:1026760-1026855:-1:exon
so has part: feature:1025310-1025439:-1:exon
so has part: feature:1024165-1024310:-1:exon
so has part: feature:1023585-1023697:-1:exon
so has part: feature:1022812-1023028:-1:exon
so has part: feature:1019052-1019143:-1:exon
so has part: feature:1018189-1018327:-1:exon
so has part: feature:1017353-1017524:-1:exon
so has part: feature:1017004-1017181:-1:exon
so has part: feature:1014002-1014192:-1:exon
so has part: feature:1011802-1011901:-1:exon
so has part: feature:1010414-1010447:-1:exon
so has part: feature:1009321-1009480:-1:exon

position:1009321:-1
position: 1009321
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1042732-1042821:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1041003-1041076:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1039955-1040111:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1035784-1035961:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1035282-1035454:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1034511-1034685:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1033537-1033604:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1029876-1030073:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1028974-1029076:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1028309-1028427:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1027185-1027475:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1026760-1026855:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:1025310-1025439:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:1024165-1024310:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:1023585-1023697:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:1022812-1023028:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:1019052-1019143:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:1018189-1018327:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:1017353-1017524:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:1017004-1017181:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:1014002-1014192:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:1011802-1011901:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:1010414-1010447:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:1009321-1009480:-1:exon

TRPM8
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59894
gene: TRPM8
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: transient receptor potential cation channel subfamily M member 8
translation: MRHRRNGNFESSRLLYSSMSRSIDVACSDADLANFIQENFKKRECVFFTKDTKSMGNLCKCGYPENQHIEGTQVNTTEKWNYKKHTKELPTDAFGDIQFENLGKRGKYIRLSCDTDSETLYDLMTQHWHLKTPNLVISVTGGAKNFALKPRMRKIFSRLIYIAQSKGAWIFTGGTHYGLMKYIGEVVRDNTISRSSEENVVAIGIAAWGMISNRETLIRTADSDGSYLAHYIMDDLKRDPLYCLDNNHTHLLLVDNGTHGHPTIEAKVRTQLEKYISERVIPESNYGGKIPIVCFAQGGGKETLKSINVAIKSKIPCVVVEGSGRIADVIASLVEAEGTLASSCVKESLLRFLPRTISRLSEEETESWIKWIKEVLESPHLLTVIKIEEAGDEIVSNAISFALYKAFSTNEHDRDNWNGQLKLLLEWNQLDLASDEIFTNDRNWESADLQDVMFTALVKDRPKFVRLFLENGLNLRKFLTTEVLRELYTNNFSSLVFKNLQIAKNSYNDALLTFVWKMVEDFRRGFKRYYKNSKDEMEIELSEECPITRHPLQALFIWSVLQNKKELSKVIWEQTRGCTLAALGASKLLKSMAKVKNDINAAGESEELANEYETRAVELFTECYSNDEDLAEQLLTYSCEAWGGSNCLELAVEARDQQFIAQPGVQNFLSKQWYGEISRDTKNWKIILCLFFFPLIGCGFISFRKKPVEKTKKLFLYYVSFFTSPFVVFSWNVIFYIAFLLLFAYVLLMDFQKEPTALEIILYVLVFILLCDEVRQWYMNGSKYFSDLWNVMDTLAIFYFIAGIVFRLHSDESSWYSGRVIFCLDYIVFTLRLIHIFTVSRNLGPKIIMLQRMMIDVFFFLFLFAVWMVAFGVARQGILRKNEHRWEWIFRSVIYEPYLAMFGQYPDDIDGTTYNFDHCTFSGNESKPLCVELDANNQPRFPEWITIPLVCIYMLSTNILLVNLLVAMFGYTVGSVQENNDQVWKFQRFFLVQEYCSRLTIPFPFVIFAYIFMVMRKCFKCCCKKESKEPSVCCSRNEDNEILAWEAVMKENYLVKINTKASDSSEEMVHRFRQLDAKLSDLKGLLKEISSKIK
SIO_010081: TRPM8
subclass of: SO_0000673
so part of: TRPM8
location: complement(join(1009430..1009480,1010414..1010447,1011802..1011901,1014002..1014192,1017004..1017181,1017353..1017524,1018189..1018327,1019052..1019143,1022812..1023028,1023585..1023697,1024165..1024310,1025310..1025439,1026760..1026855,1027185..1027475,1028309..1028427,1028974..1029076,1029876..1030073,1033537..1033604,1034511..1034685,1035282..1035454,1035784..1035961,1039955..1040111,1041003..1041076,1042732..1042821))
location: region:1009430-1042821:-1
so has part: feature:1042732-1042821:-1:exon
so has part: feature:1041003-1041076:-1:exon
so has part: feature:1039955-1040111:-1:exon
so has part: feature:1035784-1035961:-1:exon
so has part: feature:1035282-1035454:-1:exon
so has part: feature:1034511-1034685:-1:exon
so has part: feature:1033537-1033604:-1:exon
so has part: feature:1029876-1030073:-1:exon
so has part: feature:1028974-1029076:-1:exon
so has part: feature:1028309-1028427:-1:exon
so has part: feature:1027185-1027475:-1:exon
so has part: feature:1026760-1026855:-1:exon
so has part: feature:1025310-1025439:-1:exon
so has part: feature:1024165-1024310:-1:exon
so has part: feature:1023585-1023697:-1:exon
so has part: feature:1022812-1023028:-1:exon
so has part: feature:1019052-1019143:-1:exon
so has part: feature:1018189-1018327:-1:exon
so has part: feature:1017353-1017524:-1:exon
so has part: feature:1017004-1017181:-1:exon
so has part: feature:1014002-1014192:-1:exon
so has part: feature:1011802-1011901:-1:exon
so has part: feature:1010414-1010447:-1:exon
so has part: feature:1009430-1009480:-1:exon

XP_005049002.1
type: Protein
SIO_000068: ncbiprotein

position:1009430:-1
position: 1009430
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1042732-1042821:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1041003-1041076:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1039955-1040111:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1035784-1035961:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1035282-1035454:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1034511-1034685:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1033537-1033604:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1029876-1030073:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1028974-1029076:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1028309-1028427:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1027185-1027475:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1026760-1026855:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:1025310-1025439:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:1024165-1024310:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:1023585-1023697:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:1022812-1023028:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:1019052-1019143:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:1018189-1018327:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:1017353-1017524:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:1017004-1017181:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:1014002-1014192:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:1011802-1011901:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:1010414-1010447:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:1009430-1009480:-1:exon

TRPM8
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59894
gene: TRPM8
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: transient receptor potential cation channel subfamily M member 8
translation: MRHRRNGNFESSRLLYSSMSRSIDVACSDADLANFIQENFKKRECVFFTKDTKSMGNLCKCGYPENQHIEGTQVNTTEKWNYKKHTKELPTDAFGDIQFENLGKRGKYIRLSCDTDSETLYDLMTQHWHLKTPNLVISVTGGAKNFALKPRMRKIFSRLIYIAQSKGAWIFTGGTHYGLMKYIGEVVRDNTISRSSEENVVAIGIAAWGMISNRETLIRTADSDGSYLAHYIMDDLKRDPLYCLDNNHTHLLLVDNGTHGHPTIEAKVRTQLEKYISERVIPESNYGGKIPIVCFAQGGGKETLKSINVAIKSKIPCVVVEGSGRIADVIASLVEAEGTLASSCVKESLLRFLPRTISRLSEEETESWIKWIKEVLESPHLLTVIKIEEAGDEIVSNAISFALYKAFSTNEHDRDNWNGQLKLLLEWNQLDLASDEIFTNDRNWESADLQDVMFTALVKDRPKFVRLFLENGLNLRKFLTTEVLRELYTNNFSSLVFKNLQIAKNSYNDALLTFVWKMVEDFRRGFKRYYKNSKDEMEIELSEECPITRHPLQALFIWSVLQNKKELSKVIWEQTRGCTLAALGASKLLKSMAKVKNDINAAGESEELANEYETRAVELFTECYSNDEDLAEQLLTYSCEAWGGSNCLELAVEARDQQFIAQPGVQNFLSKQWYGEISRDTKNWKIILCLFFFPLIGCGFISFRKKPVEKTKKLFLYYVSFFTSPFVVFSWNVIFYIAFLLLFAYVLLMDFQKEPTALEIILYVLVFILLCDEVRQWYMNGSKYFSDLWNVMDTLAIFYFIAGIVFRLHSDESSWYSGRVIFCLDYIVFTLRLIHIFTVSRNLGPKIIMLQRMMIDVFFFLFLFAVWMVAFGVARQGILRKNEHRWEWIFRSVIYEPYLAMFGQYPDDIDGTTYNFDHCTFSGNESKPLCVELDANNQPRFPEWITIPLVCIYMLSTNILLVNLLVAMFGYTVGSVQENNDQVWKFQRFFLVQEYCSRLTIPFPFVIFAYIFMVMRKCFKCCCKKESKEPSVCCSRNEDNEILAWEAVMKENYLVKINTKASDSSEEMVHRFRQLDAKLSDLKGLLKEISSKIK
SIO_010081: TRPM8
subclass of: SO_0000673
so part of: TRPM8
location: complement(join(1009430..1009480,1010414..1010447,1011802..1011901,1014002..1014192,1017004..1017181,1017353..1017524,1018189..1018327,1019052..1019143,1022812..1023028,1023585..1023697,1024165..1024310,1025310..1025439,1026760..1026855,1027185..1027475,1028309..1028427,1028974..1029076,1029876..1030073,1033537..1033604,1034511..1034685,1035282..1035454,1035784..1035961,1039955..1040111,1041003..1041076,1042732..1042821))
location: region:1009430-1042821:-1
so has part: feature:1042732-1042821:-1:exon
so has part: feature:1041003-1041076:-1:exon
so has part: feature:1039955-1040111:-1:exon
so has part: feature:1035784-1035961:-1:exon
so has part: feature:1035282-1035454:-1:exon
so has part: feature:1034511-1034685:-1:exon
so has part: feature:1033537-1033604:-1:exon
so has part: feature:1029876-1030073:-1:exon
so has part: feature:1028974-1029076:-1:exon
so has part: feature:1028309-1028427:-1:exon
so has part: feature:1027185-1027475:-1:exon
so has part: feature:1026760-1026855:-1:exon
so has part: feature:1025310-1025439:-1:exon
so has part: feature:1024165-1024310:-1:exon
so has part: feature:1023585-1023697:-1:exon
so has part: feature:1022812-1023028:-1:exon
so has part: feature:1019052-1019143:-1:exon
so has part: feature:1018189-1018327:-1:exon
so has part: feature:1017353-1017524:-1:exon
so has part: feature:1017004-1017181:-1:exon
so has part: feature:1014002-1014192:-1:exon
so has part: feature:1011802-1011901:-1:exon
so has part: feature:1010414-1010447:-1:exon
so has part: feature:1009430-1009480:-1:exon

XP_005049003.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1042732-1042821:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1041003-1041076:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1039955-1040111:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1035784-1035961:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1035282-1035454:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1034511-1034685:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1033537-1033604:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1029876-1030073:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1028974-1029076:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1028309-1028427:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1027185-1027475:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1026760-1026855:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:1025310-1025439:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:1024165-1024310:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:1023585-1023697:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:1022812-1023028:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:1019052-1019143:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:1018189-1018327:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:1017353-1017524:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:1017004-1017181:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:1014002-1014192:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:1011802-1011901:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:1010414-1010447:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:1009430-1009480:-1:exon

AGAP1
type: Gene
subclass of: SO_0000704
RO_0002162: 59894
gene: AGAP1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 1207181..1467993
location: region:1207181-1467993:1
so has part: feature:1207181-1467993:1:exon
subclass of: SO_0000010

101808539
type: Gene
SIO_000068: ncbigene

position:1207181:1
position: 1207181
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1467993:1
position: 1467993
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1207181-1467993:1:exon

AGAP1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59894
gene: AGAP1
product: ArfGAP with GTPase domain, ankyrin repeat and PH domain 1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 98% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_016299765.1
SIO_010081: AGAP1
subclass of: SO_0000673
so part of: AGAP1
location: join(1207181..1207593,1243386..1243444,1248792..1248879,1249945..1249956,1263628..1263713,1267280..1267421,1271142..1271276,1289384..1289511,1296093..1296248,1302591..1302683,1343256..1343360,1355970..1356138,1369026..1369187,1388273..1388434,1416995..1417072,1426116..1426270,1427714..1427804,1433855..1434077,1466362..1466617,1467769..1467993)
location: region:1207181-1467993:1
so has part: feature:1207181-1207593:1:exon
so has part: feature:1243386-1243444:1:exon
so has part: feature:1248792-1248879:1:exon
so has part: feature:1249945-1249956:1:exon
so has part: feature:1263628-1263713:1:exon
so has part: feature:1267280-1267421:1:exon
so has part: feature:1271142-1271276:1:exon
so has part: feature:1289384-1289511:1:exon
so has part: feature:1296093-1296248:1:exon
so has part: feature:1302591-1302683:1:exon
so has part: feature:1343256-1343360:1:exon
so has part: feature:1355970-1356138:1:exon
so has part: feature:1369026-1369187:1:exon
so has part: feature:1388273-1388434:1:exon
so has part: feature:1416995-1417072:1:exon
so has part: feature:1426116-1426270:1:exon
so has part: feature:1427714-1427804:1:exon
so has part: feature:1433855-1434077:1:exon
so has part: feature:1466362-1466617:1:exon
so has part: feature:1467769-1467993:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1207181-1207593:1:exon

position:1207593:1
position: 1207593
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1243386-1243444:1:exon

position:1243386:1
position: 1243386
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1243444:1
position: 1243444
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1248792-1248879:1:exon

position:1248792:1
position: 1248792
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1248879:1
position: 1248879
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1249945-1249956:1:exon

position:1249945:1
position: 1249945
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1249956:1
position: 1249956
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:1263628-1263713:1:exon

position:1263628:1
position: 1263628
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1263713:1
position: 1263713
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:1267280-1267421:1:exon

position:1267280:1
position: 1267280
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1267421:1
position: 1267421
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:1271142-1271276:1:exon

position:1271142:1
position: 1271142
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1271276:1
position: 1271276
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:1289384-1289511:1:exon

position:1289384:1
position: 1289384
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1289511:1
position: 1289511
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:1296093-1296248:1:exon

position:1296093:1
position: 1296093
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1296248:1
position: 1296248
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:1302591-1302683:1:exon

position:1302591:1
position: 1302591
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1302683:1
position: 1302683
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:1343256-1343360:1:exon

position:1343256:1
position: 1343256
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1343360:1
position: 1343360
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:1355970-1356138:1:exon

position:1355970:1
position: 1355970
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1356138:1
position: 1356138
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:1369026-1369187:1:exon

position:1369026:1
position: 1369026
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1369187:1
position: 1369187
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:1388273-1388434:1:exon

position:1388273:1
position: 1388273
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1388434:1
position: 1388434
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:1416995-1417072:1:exon

position:1416995:1
position: 1416995
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1417072:1
position: 1417072
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:1426116-1426270:1:exon

position:1426116:1
position: 1426116
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1426270:1
position: 1426270
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:1427714-1427804:1:exon

position:1427714:1
position: 1427714
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1427804:1
position: 1427804
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:1433855-1434077:1:exon

position:1433855:1
position: 1433855
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1434077:1
position: 1434077
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:1466362-1466617:1:exon

position:1466362:1
position: 1466362
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1466617:1
position: 1466617
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:1467769-1467993:1:exon

position:1467769:1
position: 1467769
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

AGAP1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59894
gene: AGAP1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: arf-GAP with GTPase, ANK repeat and PH domain-containing protein 1
translation: MGTAGAPGDGLCTSSTGGCHTTHPPHKKLHKKLQGDAFVNSQEWTLSRSVPELKVGIVGNLASGKSALVHRYLTGTYVQEESPEDMDAGGRFKKEIVVDGQSYLLLIRDEGGPPEAQFAMWVDAVIFVFSLEDEVSFQTVYHYYSRMANYRNTSEIPMVLVGTQDAISSTNPRVIDDARARKLSNDLKRCTYYETCATYGLNVERVFHDVAQKIVSTKKKQQLSIGPCKSLPNSPSHSSVCSAQVSAVHISQTSNGGGSLSDYSSSVPSTPSTSQKELRIDVPPTANTPTPVRKQSKRRSNLFTSRKGSDPDKEKKVLESRTDSIGSGRAIPIKQGMLLKRSGKSLNKEWKKKYVTLCDNGVLTYHPSLHDYMQNVHGKEIDLLRTTVKVPGKRPPRATSACAPISSPKTNGLSKDMSSLHISPNSGNVTTSTSVSQMASGISLVSFNSRPDGMHQRSYSVSSADQWSEATVIANSGISSDTGLGDSVCSSPSISSTTSPKLDPPPSPHANRKKHRRKKSTSNFKADGISGTAEAKRKAWKLNRVGSLRNIYSSSSTNTEEQEENFEFIIVSLTGQTWHFEATTYEERDAWVQAIESQILASLQSCESSKNKSRLTSQNEAMALQSIRNIRGNSHCVDCEAQNPDWASLNLGALICIECSGIHRNLGTHLSRVRSLDLDDWPIELIKVMSAIGNELANSVWEENSQGHVKPSPDSTREEKELWIRAKYEQKLFLAPLQCLELSLGQHLLRATAEEDLRAVILLLAHGTRDEVNETCGDGDGRTALHLACRKGSVVLLQLLIWYGVDVMARDAHGNTALAYARQASSQECIDVLLQYGCPDERFALMATPNLSRKNNNRNNGGGRMPTII
SIO_010081: AGAP1
subclass of: SO_0000673
so part of: AGAP1
location: join(1207488..1207593,1243386..1243444,1248792..1248879,1249945..1249956,1263628..1263713,1267280..1267421,1271142..1271276,1289384..1289511,1296093..1296248,1302591..1302683,1343256..1343360,1355970..1356138,1369026..1369187,1388273..1388434,1416995..1417072,1426116..1426270,1427714..1427804,1433855..1434077,1466362..1466617,1467769..1467972)
location: region:1207488-1467972:1
so has part: feature:1207488-1207593:1:exon
so has part: feature:1243386-1243444:1:exon
so has part: feature:1248792-1248879:1:exon
so has part: feature:1249945-1249956:1:exon
so has part: feature:1263628-1263713:1:exon
so has part: feature:1267280-1267421:1:exon
so has part: feature:1271142-1271276:1:exon
so has part: feature:1289384-1289511:1:exon
so has part: feature:1296093-1296248:1:exon
so has part: feature:1302591-1302683:1:exon
so has part: feature:1343256-1343360:1:exon
so has part: feature:1355970-1356138:1:exon
so has part: feature:1369026-1369187:1:exon
so has part: feature:1388273-1388434:1:exon
so has part: feature:1416995-1417072:1:exon
so has part: feature:1426116-1426270:1:exon
so has part: feature:1427714-1427804:1:exon
so has part: feature:1433855-1434077:1:exon
so has part: feature:1466362-1466617:1:exon
so has part: feature:1467769-1467972:1:exon

XP_016155251.1
type: Protein
SIO_000068: ncbiprotein

position:1207488:1
position: 1207488
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1467972:1
position: 1467972
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1207488-1207593:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1243386-1243444:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1248792-1248879:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1249945-1249956:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1263628-1263713:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1267280-1267421:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1271142-1271276:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1289384-1289511:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1296093-1296248:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1302591-1302683:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1343256-1343360:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1355970-1356138:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:1369026-1369187:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:1388273-1388434:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:1416995-1417072:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:1426116-1426270:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:1427714-1427804:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:1433855-1434077:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:1466362-1466617:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:1467769-1467972:1:exon

GBX2
type: Gene
subclass of: SO_0000704
RO_0002162: 59894
gene: GBX2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(1489388..1497785)
location: region:1489388-1497785:-1
so has part: feature:1489388-1497785:-1:exon
subclass of: SO_0000010

101809536
type: Gene
SIO_000068: ncbigene

position:1489388:-1
position: 1489388
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1497785:-1
position: 1497785
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1489388-1497785:-1:exon

GBX2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59894
gene: GBX2
product: gastrulation brain homeobox 2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins, and 74% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_005048951.2
SIO_010081: GBX2
subclass of: SO_0000673
so part of: GBX2
location: complement(join(1489388..1490037,1490305..1490414,1494335..1494471,1497699..1497785))
location: region:1489388-1497785:-1
so has part: feature:1497699-1497785:-1:exon
so has part: feature:1494335-1494471:-1:exon
so has part: feature:1490305-1490414:-1:exon
so has part: feature:1489388-1490037:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1497699-1497785:-1:exon

position:1497699:-1
position: 1497699
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1494335-1494471:-1:exon

position:1494335:-1
position: 1494335
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1494471:-1
position: 1494471
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1490305-1490414:-1:exon

position:1490305:-1
position: 1490305
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1490414:-1
position: 1490414
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1489388-1490037:-1:exon

position:1490037:-1
position: 1490037
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

GBX2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59894
gene: GBX2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: homeobox protein GBX-2
translation: MFSGTGGRGVISLRFAPFCRRRGDAPGGMDFGGKTCQKPPCSSAVRVTRQQRFGATSQAFGATRNRVWSFIRGESPEGVPAEGGGDDGKAFLGKDGALLPFPAADAVQASLALRGQGKEDPKAEEDAKGKEESFSMDSDLDYSSDDNIAGQAAHKEEDSGNALEENPQNPPNSTNTTSTGKNRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKRVKAGNANSKTGEPSRNPKIVVPIPVHVSRFAIRSQHQQLEQARP
SIO_010081: GBX2
subclass of: SO_0000673
so part of: GBX2
location: complement(join(1489520..1490037,1490305..1490414,1494335..1494471,1497699..1497785))
location: region:1489520-1497785:-1
so has part: feature:1497699-1497785:-1:exon
so has part: feature:1494335-1494471:-1:exon
so has part: feature:1490305-1490414:-1:exon
so has part: feature:1489520-1490037:-1:exon

XP_005049008.1
type: Protein
SIO_000068: ncbiprotein

position:1489520:-1
position: 1489520
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1497699-1497785:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1494335-1494471:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1490305-1490414:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1489520-1490037:-1:exon

ASB18
type: Gene
subclass of: SO_0000704
RO_0002162: 59894
gene: ASB18
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(1499559..1517256)
location: region:1499559-1517256:-1
so has part: feature:1499559-1517256:-1:exon
subclass of: SO_0000010

101809737
type: Gene
SIO_000068: ncbigene

position:1499559:-1
position: 1499559
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1517256:-1
position: 1517256
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1499559-1517256:-1:exon

ASB18
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59894
gene: ASB18
product: ankyrin repeat and SOCS box containing 18
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 93% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_016299628.1
SIO_010081: ASB18
subclass of: SO_0000673
so part of: ASB18
location: complement(join(1499559..1500508,1501304..1501417,1501900..1502031,1502553..1502658,1510250..1510517,1513855..1514369,1517079..1517256))
location: region:1499559-1517256:-1
so has part: feature:1517079-1517256:-1:exon
so has part: feature:1513855-1514369:-1:exon
so has part: feature:1510250-1510517:-1:exon
so has part: feature:1502553-1502658:-1:exon
so has part: feature:1501900-1502031:-1:exon
so has part: feature:1501304-1501417:-1:exon
so has part: feature:1499559-1500508:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1517079-1517256:-1:exon

position:1517079:-1
position: 1517079
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1513855-1514369:-1:exon

position:1513855:-1
position: 1513855
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1514369:-1
position: 1514369
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1510250-1510517:-1:exon

position:1510250:-1
position: 1510250
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1510517:-1
position: 1510517
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1502553-1502658:-1:exon

position:1502553:-1
position: 1502553
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1502658:-1
position: 1502658
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:1501900-1502031:-1:exon

position:1501900:-1
position: 1501900
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1502031:-1
position: 1502031
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:1501304-1501417:-1:exon

position:1501304:-1
position: 1501304
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1501417:-1
position: 1501417
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:1499559-1500508:-1:exon

position:1500508:-1
position: 1500508
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

ASB18
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59894
gene: ASB18
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ankyrin repeat and SOCS box protein 18
translation: METMDYKSLAIPPGRTCTLGSTGMGESPAAVTAKLRISSKLDPEHPSAPRAPIARFYTALVKGDLRSLQVLTERYHQDVNLVFEISRNELEWQVKSQASYGLSGLWALEERQELSTPLCLAARHGHPECLRHLLRRGADPNLAPGGQGPLHEACRGGHSHCVELLLEYKANPNLRSEEGLAPLHLCASPGSLRCARLLLRRGAAVDLPSEAGGDTALHVAARHRLWHHPDGVSPLGWALHGAAGHRELRPHLTVQLLLNHGSQRIWPHAFAKVLKSCAAVPEVIEVLFNSYSQIPVCQEWAKAVPQEVFQQHRVFYESLRGLAGTARCLQHWCRSALRSSLGSRCHSLVPLLPLPRALQGFLLLEPQGVVL
SIO_010081: ASB18
subclass of: SO_0000673
so part of: ASB18
location: complement(join(1500323..1500508,1501304..1501417,1501900..1502031,1502553..1502658,1510250..1510517,1513855..1514164))
location: region:1500323-1514164:-1
so has part: feature:1513855-1514164:-1:exon
so has part: feature:1510250-1510517:-1:exon
so has part: feature:1502553-1502658:-1:exon
so has part: feature:1501900-1502031:-1:exon
so has part: feature:1501304-1501417:-1:exon
so has part: feature:1500323-1500508:-1:exon

XP_016155114.1
type: Protein
SIO_000068: ncbiprotein

position:1500323:-1
position: 1500323
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1514164:-1
position: 1514164
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1513855-1514164:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1510250-1510517:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1502553-1502658:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1501900-1502031:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1501304-1501417:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1500323-1500508:-1:exon

IQCA1
type: Gene
subclass of: SO_0000704
RO_0002162: 59894
gene: IQCA1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(1525411..1629184)
location: region:1525411-1629184:-1
so has part: feature:1525411-1629184:-1:exon
subclass of: SO_0000010

101808735
type: Gene
SIO_000068: ncbigene

position:1525411:-1
position: 1525411
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1629184:-1
position: 1629184
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1525411-1629184:-1:exon

IQCA1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59894
gene: IQCA1
product: IQ motif containing with AAA domain 1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XM_005048949.1
SIO_010081: IQCA1
subclass of: SO_0000673
so part of: IQCA1
location: complement(join(1525411..1525946,1530008..1530246,1532895..1533072,1536226..1536312,1545264..1545463,1547895..1548002,1550349..1550431,1553201..1553265,1559512..1559607,1559823..1559929,1565279..1565354,1568928..1569029,1576693..1576777,1599988..1600160,1612005..1612076,1612862..1613047,1614923..1615036,1618029..1618353,1629056..1629184))
location: region:1525411-1629184:-1
so has part: feature:1629056-1629184:-1:exon
so has part: feature:1618029-1618353:-1:exon
so has part: feature:1614923-1615036:-1:exon
so has part: feature:1612862-1613047:-1:exon
so has part: feature:1612005-1612076:-1:exon
so has part: feature:1599988-1600160:-1:exon
so has part: feature:1576693-1576777:-1:exon
so has part: feature:1568928-1569029:-1:exon
so has part: feature:1565279-1565354:-1:exon
so has part: feature:1559823-1559929:-1:exon
so has part: feature:1559512-1559607:-1:exon
so has part: feature:1553201-1553265:-1:exon
so has part: feature:1550349-1550431:-1:exon
so has part: feature:1547895-1548002:-1:exon
so has part: feature:1545264-1545463:-1:exon
so has part: feature:1536226-1536312:-1:exon
so has part: feature:1532895-1533072:-1:exon
so has part: feature:1530008-1530246:-1:exon
so has part: feature:1525411-1525946:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1629056-1629184:-1:exon

position:1629056:-1
position: 1629056
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1618029-1618353:-1:exon

position:1618029:-1
position: 1618029
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1618353:-1
position: 1618353
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1614923-1615036:-1:exon

position:1614923:-1
position: 1614923
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1615036:-1
position: 1615036
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1612862-1613047:-1:exon

position:1612862:-1
position: 1612862
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1613047:-1
position: 1613047
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:1612005-1612076:-1:exon

position:1612005:-1
position: 1612005
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1612076:-1
position: 1612076
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:1599988-1600160:-1:exon

position:1599988:-1
position: 1599988
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1600160:-1
position: 1600160
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:1576693-1576777:-1:exon

position:1576693:-1
position: 1576693
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1576777:-1
position: 1576777
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:1568928-1569029:-1:exon

position:1568928:-1
position: 1568928
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1569029:-1
position: 1569029
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:1565279-1565354:-1:exon

position:1565279:-1
position: 1565279
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1565354:-1
position: 1565354
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:1559823-1559929:-1:exon

position:1559823:-1
position: 1559823
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1559929:-1
position: 1559929
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:1559512-1559607:-1:exon

position:1559512:-1
position: 1559512
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1559607:-1
position: 1559607
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:1553201-1553265:-1:exon

position:1553201:-1
position: 1553201
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1553265:-1
position: 1553265
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:1550349-1550431:-1:exon

position:1550349:-1
position: 1550349
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1550431:-1
position: 1550431
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:1547895-1548002:-1:exon

position:1547895:-1
position: 1547895
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1548002:-1
position: 1548002
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:1545264-1545463:-1:exon

position:1545264:-1
position: 1545264
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1545463:-1
position: 1545463
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:1536226-1536312:-1:exon

position:1536226:-1
position: 1536226
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1536312:-1
position: 1536312
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:1532895-1533072:-1:exon

position:1532895:-1
position: 1532895
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1533072:-1
position: 1533072
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:1530008-1530246:-1:exon

position:1530008:-1
position: 1530008
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1530246:-1
position: 1530246
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:1525411-1525946:-1:exon

position:1525946:-1
position: 1525946
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

IQCA1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59894
gene: IQCA1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: IQ and AAA domain-containing protein 1
translation: MSQATYIKLWADTQRELDTMLQREREEFLQPQEDREKVWKMLATAYVRYLEIFRRLEASHAHLIHQQKRAAVRQVLDGVMGRLLEIKREMVALESSECHCMDGILLELQRVPEDIEIPIPEYFVKENLRVLQEREKYLQEILLNAGLLEEEPVRAMTLEEAIRVIQVAERARQGRARAAFMRRIYLEEKRQSKKQQKTTRINPDAAATCIQKVWRGYHQRMETEKLREEEMVFLGMSLPPEVEARSVLQKANVLQGEVQEREDYSFRQELREAEGSHIKETLQDEITQCFVECRHITGRFPDYPPEKTGGSKAIFIEKHPEQVAEELAGKKEAVKKEEKSRKEDKEEAKAQKAGKKVVDEGWKMSPSNFLSILEEGSSQYQVFWENRDNKSDFLQDHDPELIKGGEREEVEEEIRVQVDEVMQEKLLKVKQAVDGEIGPHGKKPGKGDKGSRKTPGKKKISELERDLTPDRTIDSLFQELAEEGLLIQVKNVNLSDYIGYYNCQRNILRETGAQPVPSIPEVRQLVALYGILPLGSQTVHENAPLVKSLLLAGPAGVGKKMLVHAICTEAGANLFKLTSSSIAGKYPGRDALMMMLHMILKVGKELQPSVLWIGDTERMFAKGAPKGEDELNFRRLAKLLPQFLRAVKPQDRVLLVGTTSRPFDANLGPFCKVYQKIILIPKPDYLTRFALWKHYILQGGGTLTKLVNLNCLAQVSDGFTQGHVVEVVHTVLTELRLLQMARKPLRTAEFVTALARHDPVYIEEEEAFQAWYAKTPLGKAWIATMAARDAEKEKAKKKGKKGKKGKGKK
SIO_010081: IQCA1
subclass of: SO_0000673
so part of: IQCA1
location: complement(join(1525824..1525946,1530008..1530246,1532895..1533072,1536226..1536312,1545264..1545463,1547895..1548002,1550349..1550431,1553201..1553265,1559512..1559607,1559823..1559929,1565279..1565354,1568928..1569029,1576693..1576777,1599988..1600160,1612005..1612076,1612862..1613047,1614923..1615036,1618029..1618353,1629056..1629066))
location: region:1525824-1629066:-1
so has part: feature:1629056-1629066:-1:exon
so has part: feature:1618029-1618353:-1:exon
so has part: feature:1614923-1615036:-1:exon
so has part: feature:1612862-1613047:-1:exon
so has part: feature:1612005-1612076:-1:exon
so has part: feature:1599988-1600160:-1:exon
so has part: feature:1576693-1576777:-1:exon
so has part: feature:1568928-1569029:-1:exon
so has part: feature:1565279-1565354:-1:exon
so has part: feature:1559823-1559929:-1:exon
so has part: feature:1559512-1559607:-1:exon
so has part: feature:1553201-1553265:-1:exon
so has part: feature:1550349-1550431:-1:exon
so has part: feature:1547895-1548002:-1:exon
so has part: feature:1545264-1545463:-1:exon
so has part: feature:1536226-1536312:-1:exon
so has part: feature:1532895-1533072:-1:exon
so has part: feature:1530008-1530246:-1:exon
so has part: feature:1525824-1525946:-1:exon

XP_005049006.1
type: Protein
SIO_000068: ncbiprotein

position:1525824:-1
position: 1525824
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1629066:-1
position: 1629066
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1629056-1629066:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1618029-1618353:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1614923-1615036:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1612862-1613047:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1612005-1612076:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1599988-1600160:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1576693-1576777:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1568928-1569029:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1565279-1565354:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1559823-1559929:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1559512-1559607:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1553201-1553265:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:1550349-1550431:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:1547895-1548002:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:1545264-1545463:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:1536226-1536312:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:1532895-1533072:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:1530008-1530246:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:1525824-1525946:-1:exon

ACKR3
type: Gene
subclass of: SO_0000704
RO_0002162: 59894
gene: ACKR3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 1676705..1682886
location: region:1676705-1682886:1
so has part: feature:1676705-1682886:1:exon
subclass of: SO_0000010

101809183
type: Gene
SIO_000068: ncbigene

position:1676705:1
position: 1676705
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1682886:1
position: 1682886
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1676705-1682886:1:exon

ACKR3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59894
gene: ACKR3
product: atypical chemokine receptor 3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 18 samples with support for all annotated introns
transcript id: XM_005048950.2
SIO_010081: ACKR3
subclass of: SO_0000673
so part of: ACKR3
location: join(1676705..1676766,1680891..1682886)
location: region:1676705-1682886:1
so has part: feature:1676705-1676766:1:exon
so has part: feature:1680891-1682886:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1676705-1676766:1:exon

position:1676766:1
position: 1676766
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1680891-1682886:1:exon

position:1680891:1
position: 1680891
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ACKR3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59894
gene: ACKR3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: atypical chemokine receptor 3
translation: MSALDLTSILDFLETANLTEINWTCNNSECITVDATTCSGTLNKSALLYTLSFFYIFIFVIGLVANSVVVWVNLQAKMTGYETHLYIFNLAIADLCVVITLPVWVVSLVQHNQWHMGEITCKITHLIFSINLYSSIFFLACMSVDRYLSVAYFTNSSSRKKKIVRRCICVLVWLLAFSASLPDTYYLKTVSSTSETYCRPVYPEESFKEWLIGMELISVVLGFLIPFPVIAVFYFLLAKSVSASGDQERKSNGRIIFSYVVVFLVCWLPYHVAVLLDIFYSLHFIPFSCQMENFLYATLHVTQCFSLVHCCVNPILYSFINRNYRYELMKAFIFKYSAKTGLTKLIDASRVSEAEYSALEQNAK
SIO_010081: ACKR3
subclass of: SO_0000673
so part of: ACKR3
location: 1680918..1682012
location: region:1680918-1682012:1
so has part: feature:1680918-1682012:1:exon

XP_005049007.1
type: Protein
SIO_000068: ncbiprotein

position:1680918:1
position: 1680918
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1682012:1
position: 1682012
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1680918-1682012:1:exon

COPS8
type: Gene
subclass of: SO_0000704
RO_0002162: 59894
gene: COPS8
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 1802612..1811120
location: region:1802612-1811120:1
so has part: feature:1802612-1811120:1:exon
subclass of: SO_0000010

101809916
type: Gene
SIO_000068: ncbigene

position:1802612:1
position: 1802612
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1811120:1
position: 1811120
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1802612-1811120:1:exon

COPS8
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59894
gene: COPS8
product: COP9 signalosome subunit 8
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 87% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_005048953.2
SIO_010081: COPS8
subclass of: SO_0000673
so part of: COPS8
location: join(1802612..1802718,1804160..1804326,1805455..1805641,1806271..1806319,1806475..1806607,1807354..1807461,1807717..1807779,1808907..1808948,1809603..1811120)
location: region:1802612-1811120:1
so has part: feature:1802612-1802718:1:exon
so has part: feature:1804160-1804326:1:exon
so has part: feature:1805455-1805641:1:exon
so has part: feature:1806271-1806319:1:exon
so has part: feature:1806475-1806607:1:exon
so has part: feature:1807354-1807461:1:exon
so has part: feature:1807717-1807779:1:exon
so has part: feature:1808907-1808948:1:exon
so has part: feature:1809603-1811120:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1802612-1802718:1:exon

position:1802718:1
position: 1802718
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1804160-1804326:1:exon

position:1804160:1
position: 1804160
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1804326:1
position: 1804326
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1805455-1805641:1:exon

position:1805455:1
position: 1805455
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1805641:1
position: 1805641
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1806271-1806319:1:exon

position:1806271:1
position: 1806271
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1806319:1
position: 1806319
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:1806475-1806607:1:exon

position:1806475:1
position: 1806475
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1806607:1
position: 1806607
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:1807354-1807461:1:exon

position:1807354:1
position: 1807354
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1807461:1
position: 1807461
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:1807717-1807779:1:exon

position:1807717:1
position: 1807717
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1807779:1
position: 1807779
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:1808907-1808948:1:exon

position:1808907:1
position: 1808907
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1808948:1
position: 1808948
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:1809603-1811120:1:exon

position:1809603:1
position: 1809603
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

COPS8
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59894
gene: COPS8
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: COP9 signalosome complex subunit 8
translation: MLRAKLPPPASSQATARFAPLLASRKREIIGNGGKSARRPQPLTGRGHAPAVLQDHRDAALATPPRSSRTPEKLLWPRLPRSSRTIESRAEKITISVVLERSLYIKLGFLLPFVSHPSLKSVTQEPVRFQAPGGIATPLVYGQLLALYLLHNDMNNARYLWKRIPPAIKSANAELGAVWSVGQRIWQRDFPGIYTAISAHQWSETIQPIMEALRDATRRRAFGLVSQAYTSIVADDFAAFVGLPVEEAVKGVLEQGWQADFATRMVMPKKPGVLEASFNRFIPSSDPAPVPPIPNEQQLARLTDYVAFLEN
SIO_010081: COPS8
subclass of: SO_0000673
so part of: COPS8
location: join(1802612..1802718,1804160..1804326,1805455..1805641,1806271..1806319,1806475..1806607,1807354..1807461,1807717..1807779,1808907..1808948,1809603..1809682)
location: region:1802612-1809682:1
so has part: feature:1802612-1802718:1:exon
so has part: feature:1804160-1804326:1:exon
so has part: feature:1805455-1805641:1:exon
so has part: feature:1806271-1806319:1:exon
so has part: feature:1806475-1806607:1:exon
so has part: feature:1807354-1807461:1:exon
so has part: feature:1807717-1807779:1:exon
so has part: feature:1808907-1808948:1:exon
so has part: feature:1809603-1809682:1:exon

XP_005049010.1
type: Protein
SIO_000068: ncbiprotein

position:1809682:1
position: 1809682
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1802612-1802718:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1804160-1804326:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1805455-1805641:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1806271-1806319:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1806475-1806607:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1807354-1807461:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1807717-1807779:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1808907-1808948:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1809603-1809682:1:exon

MRO
type: Gene
subclass of: SO_0000704
RO_0002162: 59894
gene: MRO
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(1825384..1826336)
location: region:1825384-1826336:-1
so has part: feature:1825384-1826336:-1:exon
subclass of: SO_0000010

107603737
type: Gene
SIO_000068: ncbigene

position:1825384:-1
position: 1825384
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1826336:-1
position: 1826336
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1825384-1826336:-1:exon

MRO
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59894
gene: MRO
product: maestro
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 95% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XM_016299629.1
SIO_010081: MRO
subclass of: SO_0000673
so part of: MRO
location: complement(join(1825384..1825684,1825843..1825998,1826241..1826336))
location: region:1825384-1826336:-1
so has part: feature:1826241-1826336:-1:exon
so has part: feature:1825843-1825998:-1:exon
so has part: feature:1825384-1825684:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1826241-1826336:-1:exon

position:1826241:-1
position: 1826241
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1825843-1825998:-1:exon

position:1825843:-1
position: 1825843
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1825998:-1
position: 1825998
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1825384-1825684:-1:exon

position:1825684:-1
position: 1825684
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

MRO
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59894
gene: MRO
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: protein maestro
translation: MVLSSIVYHNNMLIASPITLHLVEALLPLFDHDNSQVQEVSILLYETLMTLALEKGKKALKTQVRQSLLPLFIHCHDENPDVAEASQQALHSAAKFLKRRDLENLVKKEQLWQFAECLVRTAWKRQAEAGAAP
SIO_010081: MRO
subclass of: SO_0000673
so part of: MRO
location: complement(join(1825535..1825684,1825843..1825998,1826241..1826336))
location: region:1825535-1826336:-1
so has part: feature:1826241-1826336:-1:exon
so has part: feature:1825843-1825998:-1:exon
so has part: feature:1825535-1825684:-1:exon

XP_016155115.1
type: Protein
SIO_000068: ncbiprotein

position:1825535:-1
position: 1825535
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1826241-1826336:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1825843-1825998:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1825535-1825684:-1:exon

LOC101809403
type: Gene
subclass of: SO_0000704
RO_0002162: 59894
gene: LOC101809403
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(1827587..1828125)
location: region:1827587-1828125:-1
so has part: feature:1827587-1828125:-1:exon
subclass of: SO_0000011

101809403
type: Gene
SIO_000068: ncbigene

position:1827587:-1
position: 1827587
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1828125:-1
position: 1828125
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1827587-1828125:-1:exon

LOC101809403
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 59894
nc RNA class: lncRNA
gene: LOC101809403
product: uncharacterized LOC101809403
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XR_218892.1
SIO_010081: LOC101809403
subclass of: SO_0000673
so part of: LOC101809403
location: complement(join(1827587..1827610,1827700..1827887,1828088..1828125))
location: region:1827587-1828125:-1
so has part: feature:1828088-1828125:-1:exon
so has part: feature:1827700-1827887:-1:exon
so has part: feature:1827587-1827610:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1828088-1828125:-1:exon

position:1828088:-1
position: 1828088
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1827700-1827887:-1:exon

position:1827700:-1
position: 1827700
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1827887:-1
position: 1827887
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1827587-1827610:-1:exon

position:1827610:-1
position: 1827610
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC101810298
type: Gene
subclass of: SO_0000704
RO_0002162: 59894
gene: LOC101810298
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(1863681..1867640)
location: region:1863681-1867640:-1
so has part: feature:1863681-1867640:-1:exon
subclass of: SO_0000010

101810298
type: Gene
SIO_000068: ncbigene

position:1863681:-1
position: 1863681
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1867640:-1
position: 1867640
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1863681-1867640:-1:exon

LOC101810298
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59894
gene: LOC101810298
product: maestro heat-like repeat-containing protein family member 1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 93% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_005048954.2
SIO_010081: LOC101810298
subclass of: SO_0000673
so part of: LOC101810298
location: complement(join(1863681..1864069,1865632..1865733,1865892..1866047,1866234..1866410,1866619..1866759,1866811..1866958,1867238..1867375,1867465..1867640))
location: region:1863681-1867640:-1
so has part: feature:1867465-1867640:-1:exon
so has part: feature:1867238-1867375:-1:exon
so has part: feature:1866811-1866958:-1:exon
so has part: feature:1866619-1866759:-1:exon
so has part: feature:1866234-1866410:-1:exon
so has part: feature:1865892-1866047:-1:exon
so has part: feature:1865632-1865733:-1:exon
so has part: feature:1863681-1864069:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1867465-1867640:-1:exon

position:1867465:-1
position: 1867465
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1867238-1867375:-1:exon

position:1867238:-1
position: 1867238
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1867375:-1
position: 1867375
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1866811-1866958:-1:exon

position:1866811:-1
position: 1866811
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1866958:-1
position: 1866958
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1866619-1866759:-1:exon

position:1866619:-1
position: 1866619
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1866759:-1
position: 1866759
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:1866234-1866410:-1:exon

position:1866234:-1
position: 1866234
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1866410:-1
position: 1866410
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:1865892-1866047:-1:exon

position:1865892:-1
position: 1865892
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1866047:-1
position: 1866047
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:1865632-1865733:-1:exon

position:1865632:-1
position: 1865632
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1865733:-1
position: 1865733
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:1863681-1864069:-1:exon

position:1864069:-1
position: 1864069
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC101810298
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59894
gene: LOC101810298
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: maestro heat-like repeat-containing protein family member 1
translation: MWKILQEPCIPQIVTLYFTRLFVHLLFQAYFSTLHTPEEVDEFWKTCQKEHGFAASPNRFALETLKSLLCRMQCEGVVMAMERKCGWDMLLSADTQHYAVGLLVRVMRSSSIPLSSGIALYLLRLLSMATSLASCSHSCLRRCPCPVFLSGPSPVLGCLDVTKYGASLLEIISTNLQSECRERRHLALRCLMVLGPMNPAMAKKMWNLTENLVDVLQENDSFMVRMTIVVLRYLFLYNGAPIRSPVALRLAEALLPLFDSDDSQVQLGSITVFEEMIDLLRKEERKALKTQVWQRLLPLFIHCHDENPRVAEASQQALLRVAEFLKRRNLMQLVNTAELWQFAECLPFKS
SIO_010081: LOC101810298
subclass of: SO_0000673
so part of: LOC101810298
location: complement(join(1864055..1864069,1865632..1865733,1865892..1866047,1866234..1866410,1866619..1866759,1866811..1866958,1867238..1867375,1867465..1867640))
location: region:1864055-1867640:-1
so has part: feature:1867465-1867640:-1:exon
so has part: feature:1867238-1867375:-1:exon
so has part: feature:1866811-1866958:-1:exon
so has part: feature:1866619-1866759:-1:exon
so has part: feature:1866234-1866410:-1:exon
so has part: feature:1865892-1866047:-1:exon
so has part: feature:1865632-1865733:-1:exon
so has part: feature:1864055-1864069:-1:exon

XP_005049011.2
type: Protein
SIO_000068: ncbiprotein

position:1864055:-1
position: 1864055
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1867465-1867640:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1867238-1867375:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1866811-1866958:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1866619-1866759:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1866234-1866410:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1865892-1866047:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1865632-1865733:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1864055-1864069:-1:exon

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 59894
estimated length: 5000
gap type: between scaffolds
so part of: sequence
location: 1886918..1891917
location: region:1886918-1891917:1
so has part: feature:1886918-1891917:1:region

position:1886918:1
position: 1886918
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1891917:1
position: 1891917
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1886918-1891917:1:region

LOC101807205
type: Gene
subclass of: SO_0000704
RO_0002162: 59894
gene: LOC101807205
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 1903125..1907882
location: region:1903125-1907882:1
so has part: feature:1903125-1907882:1:exon
subclass of: SO_0000010

101807205
type: Gene
SIO_000068: ncbigene

position:1903125:1
position: 1903125
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1907882:1
position: 1907882
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1903125-1907882:1:exon

LOC101807205
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59894
gene: LOC101807205
product: uncharacterized LOC101807205
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 98% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_016299630.1
SIO_010081: LOC101807205
subclass of: SO_0000673
so part of: LOC101807205
location: join(1903125..1903540,1904201..1904259,1904367..1904501,1904803..1904951,1905201..1905215,1905273..1905405,1905614..1905801,1905890..1906027,1906290..1906359,1906403..1906441,1906614..1906751,1906960..1907136,1907268..1907423,1907582..1907882)
location: region:1903125-1907882:1
so has part: feature:1903125-1903540:1:exon
so has part: feature:1904201-1904259:1:exon
so has part: feature:1904367-1904501:1:exon
so has part: feature:1904803-1904951:1:exon
so has part: feature:1905201-1905215:1:exon
so has part: feature:1905273-1905405:1:exon
so has part: feature:1905614-1905801:1:exon
so has part: feature:1905890-1906027:1:exon
so has part: feature:1906290-1906359:1:exon
so has part: feature:1906403-1906441:1:exon
so has part: feature:1906614-1906751:1:exon
so has part: feature:1906960-1907136:1:exon
so has part: feature:1907268-1907423:1:exon
so has part: feature:1907582-1907882:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1903125-1903540:1:exon

position:1903540:1
position: 1903540
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1904201-1904259:1:exon

position:1904201:1
position: 1904201
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1904259:1
position: 1904259
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1904367-1904501:1:exon

position:1904367:1
position: 1904367
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1904501:1
position: 1904501
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1904803-1904951:1:exon

position:1904803:1
position: 1904803
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1904951:1
position: 1904951
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:1905201-1905215:1:exon

position:1905201:1
position: 1905201
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1905215:1
position: 1905215
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:1905273-1905405:1:exon

position:1905273:1
position: 1905273
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1905405:1
position: 1905405
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:1905614-1905801:1:exon

position:1905614:1
position: 1905614
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1905801:1
position: 1905801
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:1905890-1906027:1:exon

position:1905890:1
position: 1905890
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1906027:1
position: 1906027
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:1906290-1906359:1:exon

position:1906290:1
position: 1906290
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1906359:1
position: 1906359
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:1906403-1906441:1:exon

position:1906403:1
position: 1906403
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1906441:1
position: 1906441
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:1906614-1906751:1:exon

position:1906614:1
position: 1906614
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1906751:1
position: 1906751
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:1906960-1907136:1:exon

position:1906960:1
position: 1906960
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1907136:1
position: 1907136
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:1907268-1907423:1:exon

position:1907268:1
position: 1907268
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1907423:1
position: 1907423
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:1907582-1907882:1:exon

position:1907582:1
position: 1907582
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC101807205
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59894
gene: LOC101807205
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: uncharacterized protein LOC101807205
translation: MAEKRQGLSGVNSKKGSSASPAKKPNVVPRSQDGKKQTQEQDPGQSRFRRALEMFLKFKGRREKTTEDSDKFSSRPTDASIASIECAEMSNYIVKADQVPAMVRIMHERLASPETADVRLFMNILRMAEEHPAGVVLTLLRCAPTCDRAAAMMWRAIGTSGSTVGKVLPILLCVMEDWPLHSMCTSDGDNEDVFALAATLVIWVMVQVPKSHEAMYIYAPHLLVALLAQIFDSTVHGTEEVDNFWTQCQAEHNLQTNPSRFAVQTMKSLLCRLRCDNVVMAMERKRGWDTLLSADTQHYATGLLAREMHRDLTLLCSRIACHLLGMLSTPRWDLPALAFLVEVLDCLDLCECRDGVLEMMSRYLQSECKERRRLALRGLVVLIKDTFMARRIGMLSQRLVDVLGDADGEMVRMSLSVFMNVLHYKGIMVSCTTAPRLAEALLPLFDHDNSHVRVLSIQLFHKVMDLVVDEGKKAMKRIVSESLLPLFLHCHEENQRLAEASIETLLHAAGFLKKRGLKQVVKKEKLWKFAKRLVRTAWKRQAEAGAAP
SIO_010081: LOC101807205
subclass of: SO_0000673
so part of: LOC101807205
location: join(1903441..1903540,1904201..1904259,1904367..1904501,1904803..1904951,1905201..1905215,1905273..1905405,1905614..1905801,1905890..1906027,1906290..1906359,1906403..1906441,1906614..1906751,1906960..1907136,1907268..1907423,1907582..1907731)
location: region:1903441-1907731:1
so has part: feature:1903441-1903540:1:exon
so has part: feature:1904201-1904259:1:exon
so has part: feature:1904367-1904501:1:exon
so has part: feature:1904803-1904951:1:exon
so has part: feature:1905201-1905215:1:exon
so has part: feature:1905273-1905405:1:exon
so has part: feature:1905614-1905801:1:exon
so has part: feature:1905890-1906027:1:exon
so has part: feature:1906290-1906359:1:exon
so has part: feature:1906403-1906441:1:exon
so has part: feature:1906614-1906751:1:exon
so has part: feature:1906960-1907136:1:exon
so has part: feature:1907268-1907423:1:exon
so has part: feature:1907582-1907731:1:exon

XP_016155116.1
type: Protein
SIO_000068: ncbiprotein

position:1903441:1
position: 1903441
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1907731:1
position: 1907731
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1903441-1903540:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1904201-1904259:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1904367-1904501:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1904803-1904951:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1905201-1905215:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1905273-1905405:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1905614-1905801:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1905890-1906027:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1906290-1906359:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1906403-1906441:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1906614-1906751:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1906960-1907136:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:1907268-1907423:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:1907582-1907731:1:exon

COL6A3
type: Gene
subclass of: SO_0000704
RO_0002162: 59894
gene: COL6A3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(1967430..2029310)
location: region:1967430-2029310:-1
so has part: feature:1967430-2029310:-1:exon
subclass of: SO_0000010

101810477
type: Gene
SIO_000068: ncbigene

position:1967430:-1
position: 1967430
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2029310:-1
position: 2029310
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1967430-2029310:-1:exon

COL6A3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59894
gene: COL6A3
product: collagen type VI alpha 3, transcript variant X10
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 97% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_016299778.1
SIO_010081: COL6A3
subclass of: SO_0000673
so part of: COL6A3
location: complement(join(1967430..1968246,1968347..1968517,1971580..1971633,1971749..1971928,1973447..1973521,1975074..1975328,1976671..1976882,1977092..1977166,1977868..1977976,1979048..1979746,1980226..1980325,1980913..1981406,1981552..1981563,1981672..1981708,1981799..1981831,1982475..1982537,1982669..1982731,1982828..1982863,1982986..1983036,1983221..1983283,1983532..1983594,1984289..1984351,1984617..1984679,1985124..1985159,1985879..1985932,1986815..1986880,1987246..1987308,1987474..1987527,1988069..1988113,1988231..1988257,1989139..1989210,1990171..1990224,1990616..1990708,1991928..1992073,1992412..1992490,1992973..1993319,1994962..1995564,1995954..1996556,1997123..1997722,1998855..1999475,2002143..2002709,2004825..2005424,2008307..2008909,2012999..2013601,2017344..2017964,2018821..2018967,2028961..2029310))
location: region:1967430-2029310:-1
so has part: feature:2028961-2029310:-1:exon
so has part: feature:2018821-2018967:-1:exon
so has part: feature:2017344-2017964:-1:exon
so has part: feature:2012999-2013601:-1:exon
so has part: feature:2008307-2008909:-1:exon
so has part: feature:2004825-2005424:-1:exon
so has part: feature:2002143-2002709:-1:exon
so has part: feature:1998855-1999475:-1:exon
so has part: feature:1997123-1997722:-1:exon
so has part: feature:1995954-1996556:-1:exon
so has part: feature:1994962-1995564:-1:exon
so has part: feature:1992973-1993319:-1:exon
so has part: feature:1992412-1992490:-1:exon
so has part: feature:1991928-1992073:-1:exon
so has part: feature:1990616-1990708:-1:exon
so has part: feature:1990171-1990224:-1:exon
so has part: feature:1989139-1989210:-1:exon
so has part: feature:1988231-1988257:-1:exon
so has part: feature:1988069-1988113:-1:exon
so has part: feature:1987474-1987527:-1:exon
so has part: feature:1987246-1987308:-1:exon
so has part: feature:1986815-1986880:-1:exon
so has part: feature:1985879-1985932:-1:exon
so has part: feature:1985124-1985159:-1:exon
so has part: feature:1984617-1984679:-1:exon
so has part: feature:1984289-1984351:-1:exon
so has part: feature:1983532-1983594:-1:exon
so has part: feature:1983221-1983283:-1:exon
so has part: feature:1982986-1983036:-1:exon
so has part: feature:1982828-1982863:-1:exon
so has part: feature:1982669-1982731:-1:exon
so has part: feature:1982475-1982537:-1:exon
so has part: feature:1981799-1981831:-1:exon
so has part: feature:1981672-1981708:-1:exon
so has part: feature:1981552-1981563:-1:exon
so has part: feature:1980913-1981406:-1:exon
so has part: feature:1980226-1980325:-1:exon
so has part: feature:1979048-1979746:-1:exon
so has part: feature:1977868-1977976:-1:exon
so has part: feature:1977092-1977166:-1:exon
so has part: feature:1976671-1976882:-1:exon
so has part: feature:1975074-1975328:-1:exon
so has part: feature:1973447-1973521:-1:exon
so has part: feature:1971749-1971928:-1:exon
so has part: feature:1971580-1971633:-1:exon
so has part: feature:1968347-1968517:-1:exon
so has part: feature:1967430-1968246:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2028961-2029310:-1:exon

position:2028961:-1
position: 2028961
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2018821-2018967:-1:exon

position:2018821:-1
position: 2018821
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2018967:-1
position: 2018967
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2017344-2017964:-1:exon

position:2017344:-1
position: 2017344
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2017964:-1
position: 2017964
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:2012999-2013601:-1:exon

position:2012999:-1
position: 2012999
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2013601:-1
position: 2013601
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:2008307-2008909:-1:exon

position:2008307:-1
position: 2008307
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2008909:-1
position: 2008909
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:2004825-2005424:-1:exon

position:2004825:-1
position: 2004825
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2005424:-1
position: 2005424
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:2002143-2002709:-1:exon

position:2002143:-1
position: 2002143
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2002709:-1
position: 2002709
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:1998855-1999475:-1:exon

position:1998855:-1
position: 1998855
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1999475:-1
position: 1999475
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:1997123-1997722:-1:exon

position:1997123:-1
position: 1997123
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1997722:-1
position: 1997722
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:1995954-1996556:-1:exon

position:1995954:-1
position: 1995954
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1996556:-1
position: 1996556
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:1994962-1995564:-1:exon

position:1994962:-1
position: 1994962
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1995564:-1
position: 1995564
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:1992973-1993319:-1:exon

position:1992973:-1
position: 1992973
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1993319:-1
position: 1993319
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:1992412-1992490:-1:exon

position:1992412:-1
position: 1992412
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1992490:-1
position: 1992490
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:1991928-1992073:-1:exon

position:1991928:-1
position: 1991928
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1992073:-1
position: 1992073
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:1990616-1990708:-1:exon

position:1990616:-1
position: 1990616
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1990708:-1
position: 1990708
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:1990171-1990224:-1:exon

position:1990171:-1
position: 1990171
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1990224:-1
position: 1990224
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:1989139-1989210:-1:exon

position:1989139:-1
position: 1989139
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1989210:-1
position: 1989210
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:1988231-1988257:-1:exon

position:1988231:-1
position: 1988231
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1988257:-1
position: 1988257
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:1988069-1988113:-1:exon

position:1988069:-1
position: 1988069
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1988113:-1
position: 1988113
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:1987474-1987527:-1:exon

position:1987474:-1
position: 1987474
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1987527:-1
position: 1987527
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:1987246-1987308:-1:exon

position:1987246:-1
position: 1987246
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1987308:-1
position: 1987308
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 22
SIO_000628: feature:1986815-1986880:-1:exon

position:1986815:-1
position: 1986815
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1986880:-1
position: 1986880
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 23
SIO_000628: feature:1985879-1985932:-1:exon

position:1985879:-1
position: 1985879
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1985932:-1
position: 1985932
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 24
SIO_000628: feature:1985124-1985159:-1:exon

position:1985124:-1
position: 1985124
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1985159:-1
position: 1985159
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 25
SIO_000628: feature:1984617-1984679:-1:exon

position:1984617:-1
position: 1984617
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1984679:-1
position: 1984679
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 26
SIO_000628: feature:1984289-1984351:-1:exon

position:1984289:-1
position: 1984289
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1984351:-1
position: 1984351
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 27
SIO_000628: feature:1983532-1983594:-1:exon

position:1983532:-1
position: 1983532
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1983594:-1
position: 1983594
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 28
SIO_000628: feature:1983221-1983283:-1:exon

position:1983221:-1
position: 1983221
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1983283:-1
position: 1983283
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 29
SIO_000628: feature:1982986-1983036:-1:exon

position:1982986:-1
position: 1982986
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1983036:-1
position: 1983036
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 30
SIO_000628: feature:1982828-1982863:-1:exon

position:1982828:-1
position: 1982828
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1982863:-1
position: 1982863
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 31
SIO_000628: feature:1982669-1982731:-1:exon

position:1982669:-1
position: 1982669
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1982731:-1
position: 1982731
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 32
SIO_000628: feature:1982475-1982537:-1:exon

position:1982475:-1
position: 1982475
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1982537:-1
position: 1982537
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 33
SIO_000628: feature:1981799-1981831:-1:exon

position:1981799:-1
position: 1981799
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1981831:-1
position: 1981831
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 34
SIO_000628: feature:1981672-1981708:-1:exon

position:1981672:-1
position: 1981672
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1981708:-1
position: 1981708
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 35
SIO_000628: feature:1981552-1981563:-1:exon

position:1981552:-1
position: 1981552
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1981563:-1
position: 1981563
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 36
SIO_000628: feature:1980913-1981406:-1:exon

position:1980913:-1
position: 1980913
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1981406:-1
position: 1981406
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 37
SIO_000628: feature:1980226-1980325:-1:exon

position:1980226:-1
position: 1980226
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1980325:-1
position: 1980325
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 38
SIO_000628: feature:1979048-1979746:-1:exon

position:1979048:-1
position: 1979048
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1979746:-1
position: 1979746
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 39
SIO_000628: feature:1977868-1977976:-1:exon

position:1977868:-1
position: 1977868
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1977976:-1
position: 1977976
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 40
SIO_000628: feature:1977092-1977166:-1:exon

position:1977092:-1
position: 1977092
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1977166:-1
position: 1977166
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 41
SIO_000628: feature:1976671-1976882:-1:exon

position:1976671:-1
position: 1976671
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COL6A3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59894
gene: COL6A3
product: collagen type VI alpha 3, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_016299770.1
SIO_010081: COL6A3
subclass of: SO_0000673
so part of: COL6A3
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COL6A3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59894
gene: COL6A3
product: collagen type VI alpha 3, transcript variant X6
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XM_016299774.1
SIO_010081: COL6A3
subclass of: SO_0000673
so part of: COL6A3
location: complement(join(1967431..1968246,1968347..1968517,1973447..1973521,1975074..1975328,1976671..1976909,1977137..1977166,1977868..1977976,1979048..1979746,1980226..1980325,1980913..1981406,1981552..1981563,1981672..1981708,1981799..1981831,1982475..1982537,1982669..1982731,1982828..1982863,1982986..1983036,1983221..1983283,1983532..1983594,1984289..1984351,1984617..1984679,1985124..1985159,1985879..1985932,1986815..1986880,1987246..1987308,1987474..1987527,1988069..1988113,1988231..1988257,1989139..1989210,1990171..1990224,1990616..1990708,1991928..1992073,1992412..1992490,1992973..1993319,1994962..1995564,1995954..1996556,1997123..1997722,1998855..1999475,2002143..2002709,2004825..2005424,2008307..2008909,2012999..2013601,2018821..2018967,2028961..2029310))
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COL6A3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59894
gene: COL6A3
product: collagen type VI alpha 3, transcript variant X5
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_016299773.1
SIO_010081: COL6A3
subclass of: SO_0000673
so part of: COL6A3
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position:1971630:-1
position: 1971630
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

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COL6A3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59894
gene: COL6A3
product: collagen type VI alpha 3, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XM_016299772.1
SIO_010081: COL6A3
subclass of: SO_0000673
so part of: COL6A3
location: complement(join(1967431..1968246,1968347..1968517,1971580..1971633,1973447..1973521,1975074..1975328,1976671..1976909,1977137..1977166,1977868..1977976,1979048..1979746,1980226..1980325,1980913..1981406,1981552..1981563,1981672..1981708,1981799..1981831,1982475..1982537,1982669..1982731,1982828..1982863,1982986..1983036,1983221..1983283,1983532..1983594,1984289..1984351,1984617..1984679,1985124..1985159,1985879..1985932,1986815..1986880,1987246..1987308,1987474..1987527,1988069..1988113,1988231..1988257,1989139..1989210,1990171..1990224,1990616..1990708,1991928..1992073,1992412..1992490,1992973..1993319,1994962..1995564,1995954..1996556,1997123..1997722,1998855..1999475,2002143..2002709,2004825..2005424,2008307..2008909,2012999..2013601,2018821..2018967,2028961..2029310))
location: region:1967431-2029310:-1
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