Ficedula albicollis mitochondrion, complete genome.
type: Entry
definition: Ficedula albicollis mitochondrion, complete genome.
sequence version: NC_021621.1
sequence date: 2023-04-03
sequence: sequence
division: VRT
label: NC_021621.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA927338
keyword: RefSeq
source: mitochondrion Ficedula albicollis (Collared flycatcher)
organism: Ficedula albicollis
taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Muscicapidae; Ficedula.
reference: 1
references: 24923674
reference: 2
reference: 3
comment: PROVISIONAL REFSEQ: This record has not yet been subject to final\nNCBI review. The reference sequence is identical to KF293721.\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000819
sequence length: 16787
topology: circular
so has quality: SO_0000988
location: 1..16787
location: region:1-16787:1
RO_0002162: 59894

NC_021621
type: RefSeq
SIO_000068: refseq

PRJNA927338
type: BioProject
SIO_000068: bioproject

1
title: Patterns of sequencing coverage bias revealed by ultra-deep sequencing of vertebrate mitochondria
author: Ekblom, R.
author: Smeds, L.
author: Ellegren, H.
journal: BMC Genomics 15 (1), 467 (2014)
pubmed: 24923674
comments: Publication Status: Online-Only

24923674
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
journal: Submitted (29-JUN-2013) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA

3
title: Direct Submission
author: Smeds, L.
author: Ellegren, H.
journal: Submitted (25-JUN-2013) Dept of Evolutionary Biology, Uppsala University, Norbyvagen 18D, Uppsala 75236, Sweden

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16787:1
position: 16787
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-16787:1:source
so part of: sequence
organism: Ficedula albicollis
organelle: mitochondrion
mol type: genomic DNA
isolate: OC2
sex: male
country: Sweden: Oland
collection date: 2009

59894
type: Taxonomy
SIO_000068: taxonomy

trnF(gaa)
type: Gene
subclass of: SO_0000704
RO_0002162: 59894
gene: trnF(gaa)
so part of: sequence
location: 1..68
location: region:1-68:1
so has part: feature:1-68:1:exon
subclass of: SO_0000663

16027894
type: Gene
SIO_000068: ncbigene

position:68:1
position: 68
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-68:1:exon

trnF(gaa)
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 59894
gene: trnF(gaa)
product: tRNA-Phe
SIO_010081: trnF(gaa)
subclass of: SO_0000673
so part of: trnF(gaa)
location: 1..68
location: region:1-68:1
so has part: feature:1-68:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1-68:1:exon

rRNA
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 59894
product: s-rRNA
so part of: sequence
location: 68..1050
location: region:68-1050:1
so has part: feature:68-1050:1:region

position:1050:1
position: 1050
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:68-1050:1:region

trnV(tac)
type: Gene
subclass of: SO_0000704
RO_0002162: 59894
gene: trnV(tac)
so part of: sequence
location: 1050..1119
location: region:1050-1119:1
so has part: feature:1050-1119:1:exon
subclass of: SO_0000663

16027860
type: Gene
SIO_000068: ncbigene

position:1119:1
position: 1119
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1050-1119:1:exon

trnV(tac)
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 59894
gene: trnV(tac)
product: tRNA-Val
SIO_010081: trnV(tac)
subclass of: SO_0000673
so part of: trnV(tac)
location: 1050..1119
location: region:1050-1119:1
so has part: feature:1050-1119:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1050-1119:1:exon

rRNA
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 59894
product: l-rRNA
so part of: sequence
location: 1120..2715
location: region:1120-2715:1
so has part: feature:1120-2715:1:region

position:1120:1
position: 1120
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2715:1
position: 2715
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1120-2715:1:region

trnL2(taa)
type: Gene
subclass of: SO_0000704
RO_0002162: 59894
gene: trnL2(taa)
so part of: sequence
location: 2718..2792
location: region:2718-2792:1
so has part: feature:2718-2792:1:exon
subclass of: SO_0000663

16027861
type: Gene
SIO_000068: ncbigene

position:2718:1
position: 2718
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2792:1
position: 2792
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2718-2792:1:exon

trnL2(taa)
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 59894
gene: trnL2(taa)
product: tRNA-Leu
SIO_010081: trnL2(taa)
subclass of: SO_0000673
so part of: trnL2(taa)
location: 2718..2792
location: region:2718-2792:1
so has part: feature:2718-2792:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2718-2792:1:exon

ND1
type: Gene
subclass of: SO_0000704
RO_0002162: 59894
gene: ND1
so part of: sequence
location: 2798..3775
location: region:2798-3775:1
so has part: feature:2798-3775:1:exon
subclass of: SO_0000010

16027862
type: Gene
SIO_000068: ncbigene

position:2798:1
position: 2798
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3775:1
position: 3775
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2798-3775:1:exon

ND1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59894
gene: ND1
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 1
translation: MANHPLLINLIMALSYALPILIAVAFLTLVERKILSYMQGRKGPNIVGPYGLLQPLADGVKLFIKEPIRPSTSSPILFIATPMLALLLAISIWTPLPLPFSLADLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVILLSGNYTLSTLAVTQEPLYLIFACWPLAMMWYVSTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNTLTAILFFNPSALNPPQELYPVILATKVLLLSAGFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCLWHTSMPICYAGLPPYL
SIO_010081: ND1
subclass of: SO_0000673
so part of: ND1
location: 2798..3775
location: region:2798-3775:1
so has part: feature:2798-3775:1:exon

YP_008144957.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2798-3775:1:exon

trnI(gat)
type: Gene
subclass of: SO_0000704
RO_0002162: 59894
gene: trnI(gat)
so part of: sequence
location: 3781..3852
location: region:3781-3852:1
so has part: feature:3781-3852:1:exon
subclass of: SO_0000663

16027863
type: Gene
SIO_000068: ncbigene

position:3781:1
position: 3781
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3852:1
position: 3852
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3781-3852:1:exon

trnI(gat)
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 59894
gene: trnI(gat)
product: tRNA-Ile
SIO_010081: trnI(gat)
subclass of: SO_0000673
so part of: trnI(gat)
location: 3781..3852
location: region:3781-3852:1
so has part: feature:3781-3852:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3781-3852:1:exon

trnQ(ttg)
type: Gene
subclass of: SO_0000704
RO_0002162: 59894
gene: trnQ(ttg)
so part of: sequence
location: complement(3859..3929)
location: region:3859-3929:-1
so has part: feature:3859-3929:-1:exon
subclass of: SO_0000663

16027864
type: Gene
SIO_000068: ncbigene

position:3859:-1
position: 3859
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3929:-1
position: 3929
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3859-3929:-1:exon

trnQ(ttg)
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 59894
gene: trnQ(ttg)
product: tRNA-Gln
SIO_010081: trnQ(ttg)
subclass of: SO_0000673
so part of: trnQ(ttg)
location: complement(3859..3929)
location: region:3859-3929:-1
so has part: feature:3859-3929:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3859-3929:-1:exon

trnM(cat)
type: Gene
subclass of: SO_0000704
RO_0002162: 59894
gene: trnM(cat)
so part of: sequence
location: 3929..3997
location: region:3929-3997:1
so has part: feature:3929-3997:1:exon
subclass of: SO_0000663

16027865
type: Gene
SIO_000068: ncbigene

position:3929:1
position: 3929
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3997:1
position: 3997
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3929-3997:1:exon

trnM(cat)
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 59894
gene: trnM(cat)
product: tRNA-Met
SIO_010081: trnM(cat)
subclass of: SO_0000673
so part of: trnM(cat)
location: 3929..3997
location: region:3929-3997:1
so has part: feature:3929-3997:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3929-3997:1:exon

ND2
type: Gene
subclass of: SO_0000704
RO_0002162: 59894
gene: ND2
so part of: sequence
location: 3998..5037
location: region:3998-5037:1
so has part: feature:3998-5037:1:exon
subclass of: SO_0000010

16027866
type: Gene
SIO_000068: ncbigene

position:3998:1
position: 3998
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5037:1
position: 5037
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3998-5037:1:exon

ND2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59894
gene: ND2
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:5036..5037,aa:TERM)
transl table: 2
product: NADH dehydrogenase subunit 2
translation: MNPQANLVFITSLLLGTTITISSNHWIMAWAGLELNTLAILPLISKSHHPRAIEAATKYFLVQAAASTLILFSSMTNAWQTGQWDISQLTCPVSCLILTAAIAMKLGLAPFHFWFPEVLQGSSLITGLLLSTAMKFPPITLLYMTSQSLNPTLLVTMAILSAALGGWMGLNQTQTRKILAFSSISHLGWMAIIVVYSPKLALLNFYLYALMTAAAFLTLNSINTLKLSTLMTTWTKTPALSATLMLTLLSLAGLPPLTGFLPKWLIIQELTKQEMAPAATLIALLSLLSLFFYLRLAYCATITLPPHTTNHMKQWHTNKPTSILIAILTTMSITLLPASPMILTIV
SIO_010081: ND2
subclass of: SO_0000673
so part of: ND2
location: 3998..5037
location: region:3998-5037:1
so has part: feature:3998-5037:1:exon

YP_008144958.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3998-5037:1:exon

trnW(tca)
type: Gene
subclass of: SO_0000704
RO_0002162: 59894
gene: trnW(tca)
so part of: sequence
location: 5038..5108
location: region:5038-5108:1
so has part: feature:5038-5108:1:exon
subclass of: SO_0000663

16027867
type: Gene
SIO_000068: ncbigene

position:5038:1
position: 5038
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5108:1
position: 5108
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5038-5108:1:exon

trnW(tca)
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 59894
gene: trnW(tca)
product: tRNA-Trp
SIO_010081: trnW(tca)
subclass of: SO_0000673
so part of: trnW(tca)
location: 5038..5108
location: region:5038-5108:1
so has part: feature:5038-5108:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5038-5108:1:exon

trnA(tgc)
type: Gene
subclass of: SO_0000704
RO_0002162: 59894
gene: trnA(tgc)
so part of: sequence
location: complement(5110..5178)
location: region:5110-5178:-1
so has part: feature:5110-5178:-1:exon
subclass of: SO_0000663

16027868
type: Gene
SIO_000068: ncbigene

position:5110:-1
position: 5110
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5178:-1
position: 5178
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5110-5178:-1:exon

trnA(tgc)
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 59894
gene: trnA(tgc)
product: tRNA-Ala
SIO_010081: trnA(tgc)
subclass of: SO_0000673
so part of: trnA(tgc)
location: complement(5110..5178)
location: region:5110-5178:-1
so has part: feature:5110-5178:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5110-5178:-1:exon

trnN(gtt)
type: Gene
subclass of: SO_0000704
RO_0002162: 59894
gene: trnN(gtt)
so part of: sequence
location: complement(5183..5255)
location: region:5183-5255:-1
so has part: feature:5183-5255:-1:exon
subclass of: SO_0000663

16027869
type: Gene
SIO_000068: ncbigene

position:5183:-1
position: 5183
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5255:-1
position: 5255
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5183-5255:-1:exon

trnN(gtt)
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 59894
gene: trnN(gtt)
product: tRNA-Asn
SIO_010081: trnN(gtt)
subclass of: SO_0000673
so part of: trnN(gtt)
location: complement(5183..5255)
location: region:5183-5255:-1
so has part: feature:5183-5255:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5183-5255:-1:exon

trnC(gca)
type: Gene
subclass of: SO_0000704
RO_0002162: 59894
gene: trnC(gca)
so part of: sequence
location: complement(5256..5322)
location: region:5256-5322:-1
so has part: feature:5256-5322:-1:exon
subclass of: SO_0000663

16027870
type: Gene
SIO_000068: ncbigene

position:5256:-1
position: 5256
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5322:-1
position: 5322
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5256-5322:-1:exon

trnC(gca)
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 59894
gene: trnC(gca)
product: tRNA-Cys
SIO_010081: trnC(gca)
subclass of: SO_0000673
so part of: trnC(gca)
location: complement(5256..5322)
location: region:5256-5322:-1
so has part: feature:5256-5322:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5256-5322:-1:exon

trnY(gta)
type: Gene
subclass of: SO_0000704
RO_0002162: 59894
gene: trnY(gta)
so part of: sequence
location: complement(5323..5392)
location: region:5323-5392:-1
so has part: feature:5323-5392:-1:exon
subclass of: SO_0000663

16027871
type: Gene
SIO_000068: ncbigene

position:5323:-1
position: 5323
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5392:-1
position: 5392
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5323-5392:-1:exon

trnY(gta)
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 59894
gene: trnY(gta)
product: tRNA-Tyr
SIO_010081: trnY(gta)
subclass of: SO_0000673
so part of: trnY(gta)
location: complement(5323..5392)
location: region:5323-5392:-1
so has part: feature:5323-5392:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5323-5392:-1:exon

COX1
type: Gene
subclass of: SO_0000704
RO_0002162: 59894
gene: COX1
so part of: sequence
location: 5385..6944
location: region:5385-6944:1
so has part: feature:5385-6944:1:exon
subclass of: SO_0000010

16027872
type: Gene
SIO_000068: ncbigene

position:5385:1
position: 5385
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6944:1
position: 6944
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5385-6944:1:exon

COX1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59894
gene: COX1
codon start: 1
transl table: 2
product: cytochrome c oxidase subunit I
translation: MLPVTFINRWLFSTNHKDIGTLYLIFGAWAGMVGTALSLLIRAELGQPGALLGDDQVYNVVVTAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSTVEAGVGTGWTVYPPLAGNLAHAGASVDLAIFSLHLAGISSILGAINFITTAINMKPPALSQYQTPLFVWSVLITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPVLYQHLFWFFGHPEVYILILPGFGIISHVVAYYAGKKEPFGYMGMVWAMLSIGFLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGIKVFSWLATLHGGTIKWDPPMLWALGFIFLFTIGGLTGIVLANSSLDIALHDTYYVVAHFHYVLSMGAVFAILAGFTHWFPLFTGYTLHSTWAKAHFGVMFVGVNLTFFPQHFLGLAGMPRRYSDYPDAYTLWNTISSIGSLISLTAVIMLVFIIWEAFASKRKAFQPELTSTNIEWIHGCPPPFHTFEEPAFVQVQE
SIO_010081: COX1
subclass of: SO_0000673
so part of: COX1
location: 5385..6944
location: region:5385-6944:1
so has part: feature:5385-6944:1:exon

YP_008144959.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5385-6944:1:exon

trnS2(tga)
type: Gene
subclass of: SO_0000704
RO_0002162: 59894
gene: trnS2(tga)
so part of: sequence
location: complement(6936..7010)
location: region:6936-7010:-1
so has part: feature:6936-7010:-1:exon
subclass of: SO_0000663

16027873
type: Gene
SIO_000068: ncbigene

position:6936:-1
position: 6936
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7010:-1
position: 7010
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6936-7010:-1:exon

trnS2(tga)
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 59894
gene: trnS2(tga)
product: tRNA-Ser
SIO_010081: trnS2(tga)
subclass of: SO_0000673
so part of: trnS2(tga)
location: complement(6936..7010)
location: region:6936-7010:-1
so has part: feature:6936-7010:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6936-7010:-1:exon

trnD(gtc)
type: Gene
subclass of: SO_0000704
RO_0002162: 59894
gene: trnD(gtc)
so part of: sequence
location: 7014..7082
location: region:7014-7082:1
so has part: feature:7014-7082:1:exon
subclass of: SO_0000663

16027874
type: Gene
SIO_000068: ncbigene

position:7014:1
position: 7014
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7082:1
position: 7082
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7014-7082:1:exon

trnD(gtc)
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 59894
gene: trnD(gtc)
product: tRNA-Asp
SIO_010081: trnD(gtc)
subclass of: SO_0000673
so part of: trnD(gtc)
location: 7014..7082
location: region:7014-7082:1
so has part: feature:7014-7082:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:7014-7082:1:exon

COX2
type: Gene
subclass of: SO_0000704
RO_0002162: 59894
gene: COX2
so part of: sequence
location: 7092..7775
location: region:7092-7775:1
so has part: feature:7092-7775:1:exon
subclass of: SO_0000010

16027875
type: Gene
SIO_000068: ncbigene

position:7092:1
position: 7092
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7775:1
position: 7775
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7092-7775:1:exon

COX2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59894
gene: COX2
codon start: 1
transl table: 2
product: cytochrome c oxidase subunit II
translation: MANHSQFGFQDASSPIMEELMQFHDHALMVALAICSLVLYLLALMLTEKLSSSTVDAQEIELVWTILPAAVLIMLALPSLRILYMMDEVNEPDLTLKAIGHQWYWSYEYTDFKDLTFDSYMIPTSDLPLGHFRLLEVDHRVIVPTESKVRVIVTADDVLHSWAVPSLGVKTDAIPGRLNQTSFLASRPGVYYGQCSEICGANHSFMPIVVESTPLANFENWSSLLPS
SIO_010081: COX2
subclass of: SO_0000673
so part of: COX2
location: 7092..7775
location: region:7092-7775:1
so has part: feature:7092-7775:1:exon

YP_008144960.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7092-7775:1:exon

trnK(ttt)
type: Gene
subclass of: SO_0000704
RO_0002162: 59894
gene: trnK(ttt)
so part of: sequence
location: 7777..7844
location: region:7777-7844:1
so has part: feature:7777-7844:1:exon
subclass of: SO_0000663

16027876
type: Gene
SIO_000068: ncbigene

position:7777:1
position: 7777
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7844:1
position: 7844
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7777-7844:1:exon

trnK(ttt)
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 59894
gene: trnK(ttt)
product: tRNA-Lys
SIO_010081: trnK(ttt)
subclass of: SO_0000673
so part of: trnK(ttt)
location: 7777..7844
location: region:7777-7844:1
so has part: feature:7777-7844:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:7777-7844:1:exon

ATP8
type: Gene
subclass of: SO_0000704
RO_0002162: 59894
gene: ATP8
so part of: sequence
location: 7846..8013
location: region:7846-8013:1
so has part: feature:7846-8013:1:exon
subclass of: SO_0000010

16027877
type: Gene
SIO_000068: ncbigene

position:7846:1
position: 7846
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8013:1
position: 8013
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7846-8013:1:exon

ATP8
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59894
gene: ATP8
codon start: 1
transl table: 2
product: ATP synthase F0 subunit 8
translation: MPQLNPNPWFFIMLTSWLTFSLIIQPKLLTFITMNPPYNKPPMTPKTTPWSWPWT
SIO_010081: ATP8
subclass of: SO_0000673
so part of: ATP8
location: 7846..8013
location: region:7846-8013:1
so has part: feature:7846-8013:1:exon

YP_008144961.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7846-8013:1:exon

ATP6
type: Gene
subclass of: SO_0000704
RO_0002162: 59894
gene: ATP6
so part of: sequence
location: 7995..8687
location: region:7995-8687:1
so has part: feature:7995-8687:1:exon
subclass of: SO_0000010

16027878
type: Gene
SIO_000068: ncbigene

position:7995:1
position: 7995
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8687:1
position: 8687
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7995-8687:1:exon

ATP6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59894
gene: ATP6
codon start: 1
transl table: 2
product: ATP synthase F0 subunit 6
translation: MLTMNLSFFDQFSSPSLLGIPLILISMTFPALLLPSPGNRWITSRLSTLQLWFINLVTKQLMMPLHKKGHKWALILTSLMIFLLLINLLGLLPYTFTPTTQLSMNLALAFPLWLATLLTGLRNQPSASLAHLLPEGTPTPLIPALIMIETTSLLIRPLALGVRLTANLTAGHLLIQLISTATMALFSTMPVVSLLTLLVLLLLTILEVAVAMIQAYVFVLLLSLYLQENI
SIO_010081: ATP6
subclass of: SO_0000673
so part of: ATP6
location: 7995..8687
location: region:7995-8687:1
so has part: feature:7995-8687:1:exon

YP_008144962.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7995-8687:1:exon

COX3
type: Gene
subclass of: SO_0000704
RO_0002162: 59894
gene: COX3
so part of: sequence
location: 8692..9475
location: region:8692-9475:1
so has part: feature:8692-9475:1:exon
subclass of: SO_0000010

16027879
type: Gene
SIO_000068: ncbigene

position:8692:1
position: 8692
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9475:1
position: 9475
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8692-9475:1:exon

COX3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59894
gene: COX3
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:9475,aa:TERM)
transl table: 2
product: cytochrome c oxidase subunit III
translation: MAHQAHSYHMVDPSPWPILGAAAALLTTSGLTMWFHYNSPQLLIIGLTSTALVMFQWWRDIVRESTFQGHHTPTVQKGLRYGMVLFITSEAFFFLGFFWAFFHSSLAPTPELGGQWPPVGIKPLDPMDVPLLNTAILLASGVTVTWAHHSITEANRKQAIQALALTVLLGFYFTGLQAMEYYEAPFSIADGVYGSTFFVATGFHGLHVIIGSTFLLVCLFRLIKFHFTPTHHFGFEAAAWYWHFVDVVWLFLYISIYWWGS
SIO_010081: COX3
subclass of: SO_0000673
so part of: COX3
location: 8692..9475
location: region:8692-9475:1
so has part: feature:8692-9475:1:exon

YP_008144963.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8692-9475:1:exon

trnG(tcc)
type: Gene
subclass of: SO_0000704
RO_0002162: 59894
gene: trnG(tcc)
so part of: sequence
location: 9476..9544
location: region:9476-9544:1
so has part: feature:9476-9544:1:exon
subclass of: SO_0000663

16027880
type: Gene
SIO_000068: ncbigene

position:9476:1
position: 9476
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9544:1
position: 9544
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9476-9544:1:exon

trnG(tcc)
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 59894
gene: trnG(tcc)
product: tRNA-Gly
SIO_010081: trnG(tcc)
subclass of: SO_0000673
so part of: trnG(tcc)
location: 9476..9544
location: region:9476-9544:1
so has part: feature:9476-9544:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:9476-9544:1:exon

ND3
type: Gene
subclass of: SO_0000704
RO_0002162: 59894
gene: ND3
so part of: sequence
location: 9545..9895
location: region:9545-9895:1
so has part: feature:9545-9895:1:exon
subclass of: SO_0000010

16027881
type: Gene
SIO_000068: ncbigene

position:9545:1
position: 9545
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9895:1
position: 9895
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9545-9895:1:exon

ND3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59894
gene: ND3
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 3
translation: MNMIMFMITLSLGLSIALTALNFWLAQMTPDSEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWATQLQSPMTTLMWTSALILLLTLGLVYEWAQGGLEWAE
SIO_010081: ND3
subclass of: SO_0000673
so part of: ND3
location: 9545..9895
location: region:9545-9895:1
so has part: feature:9545-9895:1:exon

YP_008144964.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9545-9895:1:exon

trnR(tcg)
type: Gene
subclass of: SO_0000704
RO_0002162: 59894
gene: trnR(tcg)
so part of: sequence
location: 9897..9966
location: region:9897-9966:1
so has part: feature:9897-9966:1:exon
subclass of: SO_0000663

16027882
type: Gene
SIO_000068: ncbigene

position:9897:1
position: 9897
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9966:1
position: 9966
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9897-9966:1:exon

trnR(tcg)
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 59894
gene: trnR(tcg)
product: tRNA-Arg
SIO_010081: trnR(tcg)
subclass of: SO_0000673
so part of: trnR(tcg)
location: 9897..9966
location: region:9897-9966:1
so has part: feature:9897-9966:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:9897-9966:1:exon

ND4L
type: Gene
subclass of: SO_0000704
RO_0002162: 59894
gene: ND4L
so part of: sequence
location: 9968..10264
location: region:9968-10264:1
so has part: feature:9968-10264:1:exon
subclass of: SO_0000010

16027883
type: Gene
SIO_000068: ncbigene

position:9968:1
position: 9968
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10264:1
position: 10264
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9968-10264:1:exon

ND4L
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59894
gene: ND4L
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 4L
translation: MSHLHLSFYAAFTLSSLGLAFHRTHLISALLCLESMMLSMYVALAMWPIQMQAPSSTILPILMLTFSACEAGAGLALLVASTRTHGSDHLHNFNLLQC
SIO_010081: ND4L
subclass of: SO_0000673
so part of: ND4L
location: 9968..10264
location: region:9968-10264:1
so has part: feature:9968-10264:1:exon

YP_008144965.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9968-10264:1:exon

ND4
type: Gene
subclass of: SO_0000704
RO_0002162: 59894
gene: ND4
so part of: sequence
location: 10258..11635
location: region:10258-11635:1
so has part: feature:10258-11635:1:exon
subclass of: SO_0000010

16027884
type: Gene
SIO_000068: ncbigene

position:10258:1
position: 10258
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11635:1
position: 11635
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10258-11635:1:exon

ND4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59894
gene: ND4
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:11635,aa:TERM)
transl table: 2
product: NADH dehydrogenase subunit 4
translation: MLKIIIPTIMLLPLALLSPCKYLWTNITGHSLLIATVSLQWLVPTYYPSKALTFWTSVDQISSPLLVLSCWLLPLMIMASQNHLEQEPTIRKRIFATTLILAQPSILLAFSASELMLFYIAFEATLIPTLILITRWGNQPERLSAGIYLLFYTLASSLPLLIAILLLHNQIGTLYFPMLKLSHPMASNSWTGLMSSLALLMAFMVKAPLYGLHLWLPKAHVEAPIAGSMLLAALLLKLGGYGIMRITLLVNPSTNNLHYPFITLALWGALMTSAICLRQMDLKSLIAYSSVSHMGLVIAATMIQTQWAFSGAMILMISHGLTSSMLFCLANTNYERTHSRILLLARGLQPLLPLMATWWLLANLANMALPPTINLMAELTIVIALFNWSSLTLILTGAAILLTASYTLYMLMTTQRGVLPSHITSIQNSSTREHLLMALHMIPMILLILKPELISGTPM
SIO_010081: ND4
subclass of: SO_0000673
so part of: ND4
location: 10258..11635
location: region:10258-11635:1
so has part: feature:10258-11635:1:exon

YP_008144966.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10258-11635:1:exon

trnH(gtg)
type: Gene
subclass of: SO_0000704
RO_0002162: 59894
gene: trnH(gtg)
so part of: sequence
location: 11636..11706
location: region:11636-11706:1
so has part: feature:11636-11706:1:exon
subclass of: SO_0000663

16027885
type: Gene
SIO_000068: ncbigene

position:11636:1
position: 11636
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11706:1
position: 11706
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11636-11706:1:exon

trnH(gtg)
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 59894
gene: trnH(gtg)
product: tRNA-His
SIO_010081: trnH(gtg)
subclass of: SO_0000673
so part of: trnH(gtg)
location: 11636..11706
location: region:11636-11706:1
so has part: feature:11636-11706:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:11636-11706:1:exon

trnS1(gct)
type: Gene
subclass of: SO_0000704
RO_0002162: 59894
gene: trnS1(gct)
so part of: sequence
location: 11707..11772
location: region:11707-11772:1
so has part: feature:11707-11772:1:exon
subclass of: SO_0000663

16027886
type: Gene
SIO_000068: ncbigene

position:11707:1
position: 11707
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11772:1
position: 11772
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11707-11772:1:exon

trnS1(gct)
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 59894
gene: trnS1(gct)
product: tRNA-Ser
SIO_010081: trnS1(gct)
subclass of: SO_0000673
so part of: trnS1(gct)
location: 11707..11772
location: region:11707-11772:1
so has part: feature:11707-11772:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:11707-11772:1:exon

trnL1(tag)
type: Gene
subclass of: SO_0000704
RO_0002162: 59894
gene: trnL1(tag)
so part of: sequence
location: 11772..11842
location: region:11772-11842:1
so has part: feature:11772-11842:1:exon
subclass of: SO_0000663

16027887
type: Gene
SIO_000068: ncbigene

position:11842:1
position: 11842
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11772-11842:1:exon

trnL1(tag)
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 59894
gene: trnL1(tag)
product: tRNA-Leu
SIO_010081: trnL1(tag)
subclass of: SO_0000673
so part of: trnL1(tag)
location: 11772..11842
location: region:11772-11842:1
so has part: feature:11772-11842:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:11772-11842:1:exon

ND5
type: Gene
subclass of: SO_0000704
RO_0002162: 59894
gene: ND5
so part of: sequence
location: 11843..13660
location: region:11843-13660:1
so has part: feature:11843-13660:1:exon
subclass of: SO_0000010

16027888
type: Gene
SIO_000068: ncbigene

position:11843:1
position: 11843
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13660:1
position: 13660
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11843-13660:1:exon

ND5
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59894
gene: ND5
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 5
translation: MDLPLVLNTFMILTLATLSTPIIYPLLSDNLKNTPTTITNTVKASFLISLVPMTIYIYSGTESLTTLWEWKYIMNFKIPISLKMDFYSLTFFPIALFVSWSILQFATWYMASDPYITKFFTYLLLFLIAMLILIIANNFFILFIGWEGVGIMSFLLISWWHGRAEANTAALQAILYNRVGDIGLILCMAWLASSLNTWEIQQISAPSQTPTLPLLGLILAATGKSAQFGLHPWLPAAMEGPTPVSALLHSSTMVVAGIFLLIRTHPLFNNNQTALTLCLCLGALSTLFAATCALTQNDIKKIIAFSTSSQLGLMMVTIGLNLPQLAFLHISTHAFFKAMLFLCSGSIIHSLNGEQDIRKMGGLQKLLPTTTSCLTIGNLALMGTPFLAGFYSKDQIIECLNTSYLNAWALLLTLLATTFTAVYTIRMTVLVQAGFVRIPPLTPMNENNPAVISPITRLALGSITAGFIITSFILPTKTPPTTMPPHIKMTALIVTVLGILIALEISKMTQTMILTKQGPLSNFSTSLGYFNPLVHRFAITKLLTAGQNIASHLIDLSWYKLLGPEGLANLQTTATKAATALHSGLIKAYLGSFALSILIILMSLH
SIO_010081: ND5
subclass of: SO_0000673
so part of: ND5
location: 11843..13660
location: region:11843-13660:1
so has part: feature:11843-13660:1:exon

YP_008144967.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11843-13660:1:exon

CYTB
type: Gene
subclass of: SO_0000704
RO_0002162: 59894
gene: CYTB
so part of: sequence
location: 13669..14811
location: region:13669-14811:1
so has part: feature:13669-14811:1:exon
subclass of: SO_0000010

16027889
type: Gene
SIO_000068: ncbigene

position:13669:1
position: 13669
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14811:1
position: 14811
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13669-14811:1:exon

CYTB
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59894
gene: CYTB
codon start: 1
transl table: 2
product: cytochrome b
translation: MALNLRKNHPLFKTINDALIDLPTPSNISAWWNFGSLLGICLITQIITGLLLATHYTADTSLAFNSVAHMCRNVQFGWLIRNLHANGASFFFICIYLHIGRGFYYGSYLNKETWNVGVILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIVGITLVHLTFLHETGSNNPLGIPADCDKIPFHPYYSTKDILGFALMLILLVALALFSPNLLGDPENFTPANPLATPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLVPLLHTSKQRSLTFRPISQILFWALVANLLVLTWVGSQPVEHPFIIIGQLASLSYFTIILILFPLAAVLENKMLNL
SIO_010081: CYTB
subclass of: SO_0000673
so part of: CYTB
location: 13669..14811
location: region:13669-14811:1
so has part: feature:13669-14811:1:exon

YP_008144968.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13669-14811:1:exon

trnT(tgt)
type: Gene
subclass of: SO_0000704
RO_0002162: 59894
gene: trnT(tgt)
so part of: sequence
location: 14815..14883
location: region:14815-14883:1
so has part: feature:14815-14883:1:exon
subclass of: SO_0000663

16027890
type: Gene
SIO_000068: ncbigene

position:14815:1
position: 14815
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14883:1
position: 14883
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14815-14883:1:exon

trnT(tgt)
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 59894
gene: trnT(tgt)
product: tRNA-Thr
SIO_010081: trnT(tgt)
subclass of: SO_0000673
so part of: trnT(tgt)
location: 14815..14883
location: region:14815-14883:1
so has part: feature:14815-14883:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:14815-14883:1:exon

trnP(tgg)
type: Gene
subclass of: SO_0000704
RO_0002162: 59894
gene: trnP(tgg)
so part of: sequence
location: complement(14892..14961)
location: region:14892-14961:-1
so has part: feature:14892-14961:-1:exon
subclass of: SO_0000663

16027891
type: Gene
SIO_000068: ncbigene

position:14892:-1
position: 14892
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14961:-1
position: 14961
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14892-14961:-1:exon

trnP(tgg)
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 59894
gene: trnP(tgg)
product: tRNA-Pro
SIO_010081: trnP(tgg)
subclass of: SO_0000673
so part of: trnP(tgg)
location: complement(14892..14961)
location: region:14892-14961:-1
so has part: feature:14892-14961:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:14892-14961:-1:exon

ND6
type: Gene
subclass of: SO_0000704
RO_0002162: 59894
gene: ND6
so part of: sequence
location: complement(14969..15487)
location: region:14969-15487:-1
so has part: feature:14969-15487:-1:exon
subclass of: SO_0000010

16027892
type: Gene
SIO_000068: ncbigene

position:14969:-1
position: 14969
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15487:-1
position: 15487
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14969-15487:-1:exon

ND6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59894
gene: ND6
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 6
translation: MMQFVLFLGVCFVLGGLAVASNPSPYYGVVGLVLASIAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVSLAAEPYPEAWGDWGVVGHGLGMCLVVVVGVVVCGGVGCLVDGGTVDSGGLSSVRLDFSGVSVFYSWGAGLLLIGGWGLLLTLFVVLELVRGLSRGAIRAV
SIO_010081: ND6
subclass of: SO_0000673
so part of: ND6
location: complement(14969..15487)
location: region:14969-15487:-1
so has part: feature:14969-15487:-1:exon

YP_008144969.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14969-15487:-1:exon

trnE(ttc)
type: Gene
subclass of: SO_0000704
RO_0002162: 59894
gene: trnE(ttc)
so part of: sequence
location: complement(15489..15560)
location: region:15489-15560:-1
so has part: feature:15489-15560:-1:exon
subclass of: SO_0000663

16027893
type: Gene
SIO_000068: ncbigene

position:15489:-1
position: 15489
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15560:-1
position: 15560
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15489-15560:-1:exon

trnE(ttc)
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 59894
gene: trnE(ttc)
product: tRNA-Glu
SIO_010081: trnE(ttc)
subclass of: SO_0000673
so part of: trnE(ttc)
location: complement(15489..15560)
location: region:15489-15560:-1
so has part: feature:15489-15560:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:15489-15560:-1:exon