Coregonus clupeaformis isolate EN_2021a chromosome 32, ASM2061545v1, whole genome shotgun sequence.
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Coregoninae; Coregonus.
REFSEQ INFORMATION: The reference sequence is identical to\nCM036463.1.\nAssembly name: ASM2061545v1\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Laval University on\n2021/11/04. The original whole-genome shotgun project has the\naccession JAJAFO000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Laval University\nAssembly Date :: 14-SEP-2021\nAssembly Method :: Flye v. 2.5\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 20.0x\nSequencing Technology :: Oxford Nanopore PromethION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Status :: Full annotation\nAnnotation Name :: Coregonus clupeaformis Annotation\n Release 101\nAnnotation Version :: 101\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 9.0\nAnnotation Method :: Best-placed RefSeq; Gnomon\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\n##Genome-Annotation-Data-END##
Derived by automated computational analysis using gene prediction method: Gnomon.
COORDINATES: polyA evidence [ECO:0006239]
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: unconventional myosin-IXAa
secretory carrier-associated membrane protein 2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 23 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
Bardet-Biedl syndrome 4 protein, transcript variant X2
Bardet-Biedl syndrome 4 protein, transcript variant X1
Bardet-Biedl syndrome 4 protein, transcript variant X3
Bardet-Biedl syndrome 4 protein, transcript variant X4
Bardet-Biedl syndrome 4 protein isoform X2
Bardet-Biedl syndrome 4 protein isoform X4
Bardet-Biedl syndrome 4 protein isoform X1
Bardet-Biedl syndrome 4 protein isoform X3
vacuolar protein sorting-associated protein 13C
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 3 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 97% coverage of the annotated genomic feature by RNAseq alignments
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 3 bases in 2 codons; substituted 2 bases at 2 genomic stop codons; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: vacuolar protein sorting-associated protein 13C
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments
C2 calcium-dependent domain-containing protein 4C-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 93% coverage of the annotated genomic feature by RNAseq alignments
major histocompatibility complex class I-related gene protein, transcript variant X1
major histocompatibility complex class I-related gene protein, transcript variant X2
major histocompatibility complex class I-related gene protein
major histocompatibility complex class I-related gene protein-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
macrophage-expressed gene 1 protein-like
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: macrophage-expressed gene 1 protein-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 94% coverage of the annotated genomic feature by RNAseq alignments
pleckstrin homology domain containing, family G (with RhoGef domain) member 4, transcript variant X5
pleckstrin homology domain containing, family G (with RhoGef domain) member 4, transcript variant X4
pleckstrin homology domain containing, family G (with RhoGef domain) member 4, transcript variant X1
pleckstrin homology domain containing, family G (with RhoGef domain) member 4, transcript variant X2
pleckstrin homology domain containing, family G (with RhoGef domain) member 4, transcript variant X3
BTB/POZ domain-containing protein KCTD19, transcript variant X2
BTB/POZ domain-containing protein KCTD19, transcript variant X1
BTB/POZ domain-containing protein KCTD19 isoform X2
BTB/POZ domain-containing protein KCTD19 isoform X1
BTB/POZ domain-containing protein KCTD19, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
BTB/POZ domain-containing protein KCTD19 isoform X3
leucine-rich repeat-containing protein 36-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
leucine-rich repeat-containing protein 36-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
leucine-rich repeat-containing protein 36-like
tubulin polymerization-promoting protein family member 3, transcript variant X2
tubulin polymerization-promoting protein family member 3, transcript variant X3
tubulin polymerization-promoting protein family member 3, transcript variant X1
tubulin polymerization-promoting protein family member 3
palmitoyltransferase ZDHHC1-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 22 samples with support for all annotated introns
palmitoyltransferase ZDHHC1-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 25 samples with support for all annotated introns
palmitoyltransferase ZDHHC1-like isoform X2
palmitoyltransferase ZDHHC1-like isoform X1
iroquois homeobox 3a, transcript variant X1
iroquois homeobox 3a, transcript variant X2
iroquois-class homeodomain protein IRX-3a isoform X2
iroquois-class homeodomain protein IRX-3a isoform X1
FTO alpha-ketoglutarate dependent dioxygenase, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 19 samples with support for all annotated introns
FTO alpha-ketoglutarate dependent dioxygenase, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 23 samples with support for all annotated introns
alpha-ketoglutarate-dependent dioxygenase FTO isoform X2
alpha-ketoglutarate-dependent dioxygenase FTO isoform X1
chromodomain helicase DNA binding protein 9
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: chromodomain-helicase-DNA-binding protein 9
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
A disintegrin and metalloproteinase with thrombospondin motifs 7
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments
ceroid-lipofuscinosis neuronal protein 6 homolog, transcript variant X1
ceroid-lipofuscinosis neuronal protein 6 homolog, transcript variant X2
ceroid-lipofuscinosis neuronal protein 6 homolog
CMP-N-acetylneuraminate-beta-galactosamide- alpha-2,3-sialyltransferase 1, transcript variant X2
CMP-N-acetylneuraminate-beta-galactosamide- alpha-2,3-sialyltransferase 1 isoform X2
CMP-N-acetylneuraminate-beta-galactosamide- alpha-2,3-sialyltransferase 1, transcript variant X1
CMP-N-acetylneuraminate-beta-galactosamide- alpha-2,3-sialyltransferase 1 isoform X1
integrin, alpha 11a, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
integrin, alpha 11a, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 20 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 21 samples with support for all annotated introns
acidic (leucine-rich) nuclear phosphoprotein 32 family, member A, transcript variant X2
acidic (leucine-rich) nuclear phosphoprotein 32 family, member A, transcript variant X1
acidic leucine-rich nuclear phosphoprotein 32 family member A isoform X2
acidic leucine-rich nuclear phosphoprotein 32 family member A isoform X1
glucuronic acid epimerase b, transcript variant X1
glucuronic acid epimerase b, transcript variant X2
membrane progestin receptor gamma-B-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
membrane progestin receptor gamma-B-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
membrane progestin receptor gamma-B-like isoform X1
membrane progestin receptor gamma-B-like isoform X2
kinesin-like protein KIF23, transcript variant X1
kinesin-like protein KIF23, transcript variant X4
kinesin-like protein KIF23, transcript variant X2
kinesin-like protein KIF23, transcript variant X5
kinesin-like protein KIF23, transcript variant X7
kinesin-like protein KIF23, transcript variant X3
kinesin-like protein KIF23, transcript variant X6
serine/threonine-protein kinase/endoribonuclease IRE1a-like, transcript variant X1
serine/threonine-protein kinase/endoribonuclease IRE1a-like, transcript variant X2
serine/threonine-protein kinase/endoribonuclease IRE1a-like, transcript variant X3
serine/threonine-protein kinase/endoribonuclease IRE1a-like, transcript variant X5
serine/threonine-protein kinase/endoribonuclease IRE1a-like, transcript variant X6
serine/threonine-protein kinase/endoribonuclease IRE1a-like, transcript variant X7
serine/threonine-protein kinase/endoribonuclease IRE1a-like isoform X3
uncharacterized LOC121561314, transcript variant X2
uncharacterized LOC121561314, transcript variant X1
uncharacterized LOC121561314, transcript variant X3
uncharacterized LOC121561314, transcript variant X4
uncharacterized protein LOC121561314 isoform X4
uncharacterized protein LOC121561314 isoform X3
uncharacterized protein LOC121561314 isoform X2
uncharacterized protein LOC121561314 isoform X1
uncharacterized protein LOC121561316 isoform X1
serine/threonine-protein kinase/endoribonuclease IRE1a-like, transcript variant X4
serine/threonine-protein kinase/endoribonuclease IRE1a-like isoform X2
serine/threonine-protein kinase/endoribonuclease IRE1a-like isoform X4
interferon regulatory factor 8-like, transcript variant X8
interferon regulatory factor 8-like, transcript variant X7
interferon regulatory factor 8-like, transcript variant X6
interferon regulatory factor 8-like, transcript variant X3
interferon regulatory factor 8-like, transcript variant X2
interferon regulatory factor 8-like, transcript variant X1
interferon regulatory factor 8-like, transcript variant X5
interferon regulatory factor 8-like isoform X2
interferon regulatory factor 8-like isoform X3
interferon regulatory factor 8-like isoform X1
interferon regulatory factor 8-like isoform X5
interferon regulatory factor 8-like, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 21 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
interferon regulatory factor 8-like isoform X4
dual specificity protein phosphatase 22-A
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 51 samples with support for all annotated introns
cytochrome c oxidase subunit 4 isoform 1, mitochondrial
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 46 samples with support for all annotated introns
DNA replication complex GINS protein PSF2
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 97% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns
LOW QUALITY PROTEIN: CHRNA7-FAM7A fusion protein-like
LOW QUALITY PROTEIN: activating signal cointegrator 1
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 34 samples with support for all annotated introns
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: zinc finger protein 609
GRAM domain-containing protein 2A, transcript variant X5
GRAM domain-containing protein 2A, transcript variant X4
GRAM domain-containing protein 2A, transcript variant X3
GRAM domain-containing protein 2A, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
GRAM domain-containing protein 2A, transcript variant X1
GRAM domain-containing protein 2A, transcript variant X8
GRAM domain-containing protein 2A, transcript variant X6
GRAM domain-containing protein 2A, transcript variant X9
GRAM domain-containing protein 2A isoform X1
GRAM domain-containing protein 2A isoform X3
GRAM domain-containing protein 2A isoform X6
GRAM domain-containing protein 2A isoform X4
GRAM domain-containing protein 2A isoform X7
GRAM domain-containing protein 2A isoform X2
GRAM domain-containing protein 2A, transcript variant X7
GRAM domain-containing protein 2A isoform X5
SUMO peptidase family member, NEDD8 specific
FH1/FH2 domain-containing protein 3-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 58% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 25 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 36 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 24 samples with support for all annotated introns
cadherin-related family member 5a, transcript variant X2
cadherin-related family member 5a, transcript variant X3
cadherin-related family member 5a, transcript variant X1
cadherin-related family member 5 isoform X2
cadherin-related family member 5 isoform X3
cadherin-related family member 5 isoform X1
cadherin-related family member 5a, transcript variant X4
cadherin-related family member 5 isoform X4
dopamine receptor D4b, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns
dopamine receptor D4b, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
NAD-dependent protein deacetylase sirtuin-3, mitochondrial
26S proteasome non-ATPase regulatory subunit 13
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 20 Proteins, and 97% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
zinc finger protein 319, transcript variant X2
zinc finger protein 319, transcript variant X1
casein kinase 2, alpha prime polypeptide a
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 20 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 13 samples with support for all annotated introns
uncharacterized LOC121579572, transcript variant X2
uncharacterized LOC121579572, transcript variant X1
TOX high mobility group box family member 3, transcript variant X1
TOX high mobility group box family member 3, transcript variant X2
TOX high mobility group box family member 3 isoform X1
TOX high mobility group box family member 3 isoform X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 26 samples with support for all annotated introns
ankyrin repeat domain-containing protein 11-like
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
LOW QUALITY PROTEIN: ankyrin repeat domain-containing protein 11-like
putative solute carrier family 22 member 31, transcript variant X1
putative solute carrier family 22 member 31 isoform X1
putative solute carrier family 22 member 31, transcript variant X2
putative solute carrier family 22 member 31 isoform X2
putative solute carrier family 22 member 31, transcript variant X3
putative solute carrier family 22 member 31 isoform X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 68% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins, and 66% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 93% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 22% coverage of the annotated genomic feature by RNAseq alignments
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 2 codons
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 21 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 21 samples with support for all annotated introns
protein BEAN1-like, transcript variant X1
protein BEAN1-like, transcript variant X2
protein BEAN1-like, transcript variant X3
LOW QUALITY PROTEIN: uncharacterized protein LOC121548432
thymidine kinase 2, mitochondrial-like, transcript variant X2
thymidine kinase 2, mitochondrial-like, transcript variant X1
thymidine kinase 2, mitochondrial-like isoform X2
thymidine kinase 2, mitochondrial-like isoform X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 21 samples with support for all annotated introns
CKLF-like MARVEL transmembrane domain-containing protein 3, transcript variant X2
CKLF-like MARVEL transmembrane domain-containing protein 3, transcript variant X1
CKLF-like MARVEL transmembrane domain-containing protein 3 isoform X1
CKLF-like MARVEL transmembrane domain-containing protein 3 isoform X2
CKLF-like MARVEL transmembrane domain-containing protein 4, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 17 samples with support for all annotated introns
CKLF-like MARVEL transmembrane domain-containing protein 4, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 31 samples with support for all annotated introns
CKLF-like MARVEL transmembrane domain-containing protein 4
cytoplasmic dynein 1 light intermediate chain 2, transcript variant X2
similar to RNA sequence (same species):INSD:GFGX01039010.1
annotated by transcript or proteomic data
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: added 603 bases not found in genome assembly
cytoplasmic dynein 1 light intermediate chain 2, transcript variant X1
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: added 517 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon.
cytoplasmic dynein 1 light intermediate chain 2 isoform X1
cytoplasmic dynein 1 light intermediate chain 2 isoform X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 3 Proteins, and 91% coverage of the annotated genomic feature by RNAseq alignments, including 23 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 77% coverage of the annotated genomic feature by RNAseq alignments
eukaryotic translation initiation factor 3 subunit J-A-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 96% coverage of the annotated genomic feature by RNAseq alignments, including 15 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 95% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 55% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 74% coverage of the annotated genomic feature by RNAseq alignments
protein FAM189A1-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
protein FAM189A1-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 22 samples with support for all annotated introns
eukaryotic translation initiation factor 4, gamma 2a
eukaryotic translation initiation factor 4 gamma 2a
CTR9 homolog, Paf1/RNA polymerase II complex component
RNA polymerase-associated protein CTR9 homolog
inositol 1,4,5-triphosphate receptor associated 2-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 73% coverage of the annotated genomic feature by RNAseq alignments
eukaryotic translation initiation factor 3 subunit A-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 91% coverage of the annotated genomic feature by RNAseq alignments
murine retrovirus integration site 1 homolog
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 3 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 Proteins, and 88% coverage of the annotated genomic feature by RNAseq alignments
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 3 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: inositol 1,4,5-triphosphate receptor associated 1
lymphatic vessel endothelial hyaluronic receptor 1a
lymphatic vessel endothelial hyaluronic acid receptor 1a
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon
LOW QUALITY PROTEIN: myotubularin-related protein 13
synaptotagmin-4-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
synaptotagmin-4-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 86% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
semaphorin-4D-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns
semaphorin-4D-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 48 samples with support for all annotated introns
zinc finger, AN1-type domain 6, transcript variant X1
zinc finger, AN1-type domain 6, transcript variant X3
zinc finger, AN1-type domain 6, transcript variant X5
zinc finger, AN1-type domain 6, transcript variant X2
zinc finger, AN1-type domain 6, transcript variant X4
AN1-type zinc finger protein 6 isoform X4
AN1-type zinc finger protein 6 isoform X2
AN1-type zinc finger protein 6 isoform X3
AN1-type zinc finger protein 6 isoform X1
5,10-methenyltetrahydrofolate synthetase (5-formyltetrahydrofolate cyclo-ligase), transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 58 samples with support for all annotated introns
5,10-methenyltetrahydrofolate synthetase (5-formyltetrahydrofolate cyclo-ligase) isoform X1
5,10-methenyltetrahydrofolate synthetase (5-formyltetrahydrofolate cyclo-ligase), transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 28 samples with support for all annotated introns
5,10-methenyltetrahydrofolate synthetase (5-formyltetrahydrofolate cyclo-ligase) isoform X2
membrane integral NOTCH2 associated receptor 1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 20 samples with support for all annotated introns
major intrinsically disordered Notch2-binding receptor 1
ADAM metallopeptidase with thrombospondin type 1 motif, 17, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
ADAM metallopeptidase with thrombospondin type 1 motif, 17, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments
ADAM metallopeptidase with thrombospondin type 1 motif, 17, transcript variant X2
A disintegrin and metalloproteinase with thrombospondin motifs 17 isoform X3
A disintegrin and metalloproteinase with thrombospondin motifs 17 isoform X1
A disintegrin and metalloproteinase with thrombospondin motifs 17 isoform X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 78% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 41 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins, and 90% coverage of the annotated genomic feature by RNAseq alignments, including 30 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 78% coverage of the annotated genomic feature by RNAseq alignments
leucine-rich repeat serine/threonine-protein kinase 1-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein