Coregonus clupeaformis isolate EN_2021a chromosome 22, ASM2061545v1, whole genome shotgun sequence.
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Coregoninae; Coregonus.
REFSEQ INFORMATION: The reference sequence is identical to\nCM036453.1.\nAssembly name: ASM2061545v1\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Laval University on\n2021/11/04. The original whole-genome shotgun project has the\naccession JAJAFO000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Laval University\nAssembly Date :: 14-SEP-2021\nAssembly Method :: Flye v. 2.5\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 20.0x\nSequencing Technology :: Oxford Nanopore PromethION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Status :: Full annotation\nAnnotation Name :: Coregonus clupeaformis Annotation\n Release 101\nAnnotation Version :: 101\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 9.0\nAnnotation Method :: Best-placed RefSeq; Gnomon\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\n##Genome-Annotation-Data-END##
Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized protein LOC555481 homolog
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
GPRIN family member 3b, transcript variant X1
COORDINATES: polyA evidence [ECO:0006239]
GPRIN family member 3b, transcript variant X2
GPRIN family member 3b, transcript variant X3
G protein-regulated inducer of neurite outgrowth 3
mitochondrial brown fat uncoupling protein 1
TBC1 domain family, member 9 (with GRAM domain), transcript variant X1
TBC1 domain family, member 9 (with GRAM domain), transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
gastrula zinc finger protein XlCGF49.1-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: general vesicular transport factor p115
G3BP stress granule assembly factor 2a, transcript variant X4
G3BP stress granule assembly factor 2a, transcript variant X3
G3BP stress granule assembly factor 2a, transcript variant X2
G3BP stress granule assembly factor 2a, transcript variant X1
ras GTPase-activating protein-binding protein 2 isoform X4
ras GTPase-activating protein-binding protein 2 isoform X3
ras GTPase-activating protein-binding protein 2 isoform X2
ras GTPase-activating protein-binding protein 2 isoform X1
polycystic kidney disease 2, transcript variant X1
polycystic kidney disease 2, transcript variant X2
broad substrate specificity ATP-binding cassette transporter ABCG2-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 15 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 70% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 97% coverage of the annotated genomic feature by RNAseq alignments
uncharacterized LOC123481637, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 13 samples with support for all annotated introns
uncharacterized LOC123481637, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: nucleotide motif:Rfam:12.0:RF00092
NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 96% coverage of the annotated genomic feature by RNAseq alignments, including 33 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 98% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
cyclin-dependent kinase 5 activator 2-like
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: cyclin-dependent kinase 5 activator 2-like
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 3 bases in 3 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 97% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 3 bases in 3 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: formin-like protein 2
coiled-coil domain-containing protein 14-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 33 samples with support for all annotated introns
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 2 codons
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: IQ calmodulin-binding motif-containing protein 1
vesicle transport protein SFT2B, transcript variant X1
vesicle transport protein SFT2B isoform X1
vesicle transport protein SFT2B, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 32 samples with support for all annotated introns
vesicle transport protein SFT2B isoform X2
E3 ubiquitin-protein ligase AIRP1, transcript variant X4
E3 ubiquitin-protein ligase AIRP1, transcript variant X2
E3 ubiquitin-protein ligase AIRP1, transcript variant X3
E3 ubiquitin-protein ligase AIRP1, transcript variant X1
E3 ubiquitin-protein ligase AIRP1 isoform X4
chromatin modification-related protein EAF7 isoform X3
chromatin modification-related protein EAF7 isoform X1
chromatin modification-related protein EAF7 isoform X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 23 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 13 samples with support for all annotated introns
polycomb protein eed, transcript variant X1
polycomb protein eed, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 18% coverage of the annotated genomic feature by RNAseq alignments
LOW QUALITY PROTEIN: glycerol kinase-like
glycerol-3-phosphate dehydrogenase 2 (mitochondrial), transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 14 samples with support for all annotated introns
glycerol-3-phosphate dehydrogenase 2 (mitochondrial), transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 30 samples with support for all annotated introns
glycerol-3-phosphate dehydrogenase, mitochondrial isoform X2
glycerol-3-phosphate dehydrogenase, mitochondrial isoform X1
nuclear receptor subfamily 4 group A member 2-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 31 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 13 samples with support for all annotated introns
nuclear receptor subfamily 4 group A member 2-like, transcript variant X2
nuclear receptor subfamily 4 group A member 2-like, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 31 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 14 samples with support for all annotated introns
nuclear receptor subfamily 4 group A member 2-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 45 samples with support for all annotated introns
5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase
bifunctional purine biosynthesis protein PURH
carboxypeptidase O, transcript variant X2
carboxypeptidase O, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 97% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
nucleotide triphosphate diphosphatase NUDT15
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 1 codon
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC121536067, transcript variant X2
uncharacterized LOC121536067, transcript variant X1
uncharacterized protein LOC121536067 isoform X1
uncharacterized protein LOC121536067 isoform X2
uncharacterized LOC121536066, transcript variant X1
uncharacterized LOC121536066, transcript variant X2
uncharacterized LOC121536066, transcript variant X3
uncharacterized LOC121536066, transcript variant X4
uncharacterized protein LOC121536066 isoform X1
uncharacterized protein LOC121536066 isoform X2
uncharacterized protein LOC121536066 isoform X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, transcript variant X1
LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, transcript variant X2
U6 snRNA-associated Sm-like protein LSm6
zinc finger protein 827, transcript variant X1
zinc finger protein 827, transcript variant X3
zinc finger protein 827, transcript variant X2
zinc finger protein 827, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 29 samples with support for all annotated introns
zinc finger protein 827, transcript variant X5
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 22 samples with support for all annotated introns
methylmalonic aciduria type A protein, mitochondrial
SMAD family member 1, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 24 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
SMAD family member 1, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 37 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 15 samples with support for all annotated introns
SMAD family member 1, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 34 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 22 samples with support for all annotated introns
mothers against decapentaplegic homolog 1 isoform X3
mothers against decapentaplegic homolog 1 isoform X2
mothers against decapentaplegic homolog 1 isoform X1
ATP-binding cassette, sub-family E (OABP), member 1, transcript variant X1
ATP-binding cassette, sub-family E (OABP), member 1, transcript variant X2
ATP-binding cassette sub-family E member 1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 43 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
uncharacterized LOC121536002, transcript variant X1
uncharacterized LOC121536002, transcript variant X2
uncharacterized protein LOC121536002 isoform X1
uncharacterized protein LOC121536002 isoform X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 25 samples with support for all annotated introns
FRAS1-related extracellular matrix protein 3
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5
ubiquitin specific peptidase 38, transcript variant X1
ubiquitin specific peptidase 38, transcript variant X2
ubiquitin carboxyl-terminal hydrolase 38
GRB2-associated binding protein 1, transcript variant X13
GRB2-associated binding protein 1, transcript variant X7
GRB2-associated binding protein 1, transcript variant X5
GRB2-associated binding protein 1, transcript variant X8
GRB2-associated binding protein 1, transcript variant X2
GRB2-associated binding protein 1, transcript variant X4
GRB2-associated binding protein 1, transcript variant X1
GRB2-associated binding protein 1, transcript variant X3
GRB2-associated binding protein 1, transcript variant X6
GRB2-associated binding protein 1, transcript variant X10
GRB2-associated binding protein 1, transcript variant X9
GRB2-associated binding protein 1, transcript variant X11
GRB2-associated binding protein 1, transcript variant X12
GRB2-associated-binding protein 1 isoform X1
GRB2-associated-binding protein 1 isoform X2
GRB2-associated-binding protein 1 isoform X4
GRB2-associated-binding protein 1 isoform X5
GRB2-associated-binding protein 1 isoform X3
GRB2-associated-binding protein 1 isoform X7
GRB2-associated-binding protein 1 isoform X6
GRB2-associated-binding protein 1 isoform X8
GRB2-associated-binding protein 1 isoform X9
GRB2-associated-binding protein 1 isoform X10
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 86% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 34 samples with support for all annotated introns
glutamate receptor ionotropic, NMDA 3B-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments
phospholipid phosphatase-related protein type 3-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 25 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 97% coverage of the annotated genomic feature by RNAseq alignments
polypyrimidine tract-binding protein 1, transcript variant X2
polypyrimidine tract-binding protein 1, transcript variant X4
polypyrimidine tract-binding protein 1, transcript variant X1
polypyrimidine tract-binding protein 1, transcript variant X3
polypyrimidine tract-binding protein 1 isoform X1
polypyrimidine tract-binding protein 1 isoform X3
polypyrimidine tract-binding protein 1 isoform X2
polypyrimidine tract-binding protein 1 isoform X4
polypyrimidine tract-binding protein 1, transcript variant X5
polypyrimidine tract-binding protein 1 isoform X5
coiled-coil domain-containing protein 122, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
coiled-coil domain-containing protein 122, transcript variant X3
coiled-coil domain-containing protein 122, transcript variant X1
coiled-coil domain-containing protein 122 isoform X2
coiled-coil domain-containing protein 122 isoform X3
coiled-coil domain-containing protein 122 isoform X1
tumor necrosis factor ligand superfamily member 11-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
mitochondrial translational release factor 1, transcript variant X1
peptide chain release factor 1, mitochondrial isoform X1
mitochondrial translational release factor 1, transcript variant X2
peptide chain release factor 1, mitochondrial isoform X2
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
transfer RNA glutamic acid (anticodon UUC); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon
LOW QUALITY PROTEIN: SLAIN motif-containing protein 1
NACHT, LRR and PYD domains-containing protein 3-like
LOW QUALITY PROTEIN: NACHT, LRR and PYD domains-containing protein 3-like
POU domain, class 3, transcription factor 3-B
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 97% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 79% coverage of the annotated genomic feature by RNAseq alignments
serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 87% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 52 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 54 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 69% coverage of the annotated genomic feature by RNAseq alignments
SLAM family member 9-like, transcript variant X1
SLAM family member 9-like, transcript variant X3
SLAM family member 9-like, transcript variant X2
uncharacterized LOC121558433, transcript variant X4
uncharacterized LOC121558433, transcript variant X2
uncharacterized LOC121558433, transcript variant X1
uncharacterized LOC121558433, transcript variant X3
uncharacterized protein LOC121558433 isoform X1
uncharacterized protein LOC121558433 isoform X2
uncharacterized protein LOC121558433 isoform X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 78% coverage of the annotated genomic feature by RNAseq alignments
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 97% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
LOW QUALITY PROTEIN: UPF0575 protein C19orf67 homolog
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 67% coverage of the annotated genomic feature by RNAseq alignments
small integral membrane protein 28-like, transcript variant X3
small integral membrane protein 28-like, transcript variant X2
small integral membrane protein 28-like, transcript variant X1
uncharacterized protein LOC121533978 isoform X3
small integral membrane protein 28-like isoform X2
small integral membrane protein 28-like isoform X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 91% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 18 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 69% coverage of the annotated genomic feature by RNAseq alignments
neurotrophin receptor-interacting factor homolog
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 97% coverage of the annotated genomic feature by RNAseq alignments, including 16 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 30 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 94% coverage of the annotated genomic feature by RNAseq alignments
zinc finger protein with KRAB and SCAN domains 8-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 24 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 98% coverage of the annotated genomic feature by RNAseq alignments, including 15 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
B-cell CLL/lymphoma 6 member B protein-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments
microsomal triglyceride transfer protein
microsomal triglyceride transfer protein large subunit
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 16 samples with support for all annotated introns
leucine-rich repeat LGI family member 2, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 18 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 22 samples with support for all annotated introns
leucine-rich repeat LGI family member 2, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
leucine-rich repeat LGI family member 2, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
leucine-rich repeat LGI family member 2 isoform X1
leucine-rich repeat LGI family member 2 isoform X2
leucine-rich repeat LGI family member 2 isoform X3
coiled-coil domain-containing protein 149, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
coiled-coil domain-containing protein 149, transcript variant X3
coiled-coil domain-containing protein 149, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 13 samples with support for all annotated introns
coiled-coil domain-containing protein 149, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
coiled-coil domain-containing protein 149, transcript variant X5
coiled-coil domain-containing protein 149-B isoform X1
coiled-coil domain-containing protein 149 isoform X3
coiled-coil domain-containing protein 149-B isoform X2
coiled-coil domain-containing protein 149 isoform X4
coiled-coil domain-containing protein 149 isoform X5
extracellular superoxide dismutase [Cu-Zn]-like
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15
storkhead-box protein 2-like, transcript variant X1
storkhead-box protein 2-like, transcript variant X3
storkhead-box protein 2-like, transcript variant X2
caspase 3, apoptosis-related cysteine peptidase a
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 81 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 39 samples with support for all annotated introns
acyl-CoA synthetase long chain family member 1a, transcript variant X2
acyl-CoA synthetase long chain family member 1a, transcript variant X3
acyl-CoA synthetase long chain family member 1a, transcript variant X1
long-chain-fatty-acid--CoA ligase 1a isoform X2
long-chain-fatty-acid--CoA ligase 1a isoform X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 25 samples with support for all annotated introns
hairy and enhancer of split-related protein helt
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 40% coverage of the annotated genomic feature by RNAseq alignments
uncharacterized protein si:ch211-197n1.2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 26 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 41 samples with support for all annotated introns
cilia and flagella associated protein 97
cilia- and flagella-associated protein 97
transfer RNA arginine (anticodon UCU); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
ankyrin repeat domain 37, transcript variant X2
ankyrin repeat domain 37, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 29 samples with support for all annotated introns
ankyrin repeat domain-containing protein 37 isoform X2
ankyrin repeat domain-containing protein 37 isoform X1
similar to RNA sequence (same species):INSD:GFGX01058581.1
annotated by transcript or proteomic data
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; deleted 5 bases in 4 codons; added 137 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 86% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; deleted 5 bases in 4 codons; added 9 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: NXPE family member 3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 30 Proteins, and 7% coverage of the annotated genomic feature by RNAseq alignments
zinc finger protein 62 homolog, transcript variant X2
zinc finger protein 62 homolog, transcript variant X1
vegetative cell wall protein gp1-like isoform X1
zinc finger protein 62 homolog isoform X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 92% coverage of the annotated genomic feature by RNAseq alignments
von Willebrand factor A domain-containing protein 7-like, transcript variant X2
von Willebrand factor A domain-containing protein 7-like isoform X2
von Willebrand factor A domain-containing protein 7-like, transcript variant X1
von Willebrand factor A domain-containing protein 7-like isoform X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
1-acylglycerol-3-phosphate O-acyltransferase 3, transcript variant X2
1-acylglycerol-3-phosphate O-acyltransferase 3, transcript variant X3
1-acylglycerol-3-phosphate O-acyltransferase 3, transcript variant X1
1-acylglycerol-3-phosphate O-acyltransferase 3, transcript variant X4
1-acyl-sn-glycerol-3-phosphate acyltransferase gamma
pyridoxal (pyridoxine, vitamin B6) kinase b, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 32 samples with support for all annotated introns
pyridoxal (pyridoxine, vitamin B6) kinase b, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
pyridoxal (pyridoxine, vitamin B6) kinase b isoform X1
pyridoxal (pyridoxine, vitamin B6) kinase b isoform X3
pyridoxal (pyridoxine, vitamin B6) kinase b, transcript variant X2
pyridoxal (pyridoxine, vitamin B6) kinase b isoform X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 98% coverage of the annotated genomic feature by RNAseq alignments
ATP synthase-coupling factor 6, mitochondrial, transcript variant X2
ATP synthase-coupling factor 6, mitochondrial, transcript variant X1
ATP synthase-coupling factor 6, mitochondrial, transcript variant X4
ATP synthase-coupling factor 6, mitochondrial, transcript variant X3
ATP synthase-coupling factor 6, mitochondrial isoform X2
intersectin 1 (SH3 domain protein), transcript variant X5
intersectin 1 (SH3 domain protein), transcript variant X3
intersectin 1 (SH3 domain protein), transcript variant X2
intersectin 1 (SH3 domain protein), transcript variant X1
intersectin 1 (SH3 domain protein), transcript variant X4
crystallin, zeta (quinone reductase)-like 1, transcript variant X1
crystallin, zeta (quinone reductase)-like 1, transcript variant X2
crystallin, zeta (quinone reductase)-like 1, transcript variant X3
quinone oxidoreductase-like protein 1 isoform X1
quinone oxidoreductase-like protein 1 isoform X2
SET domain containing 4, transcript variant X2
SET domain containing 4, transcript variant X1
SET domain-containing protein 4 isoform X2
SET domain-containing protein 4 isoform X1
BCL9 transcription coactivator, transcript variant X1
BCL9 transcription coactivator, transcript variant X5
BCL9 transcription coactivator, transcript variant X6
BCL9 transcription coactivator, transcript variant X4
BCL9 transcription coactivator, transcript variant X2
BCL9 transcription coactivator, transcript variant X3
B-cell CLL/lymphoma 9 protein isoform X1
B-cell CLL/lymphoma 9 protein isoform X2
B-cell CLL/lymphoma 9 protein isoform X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 19 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins, and 97% coverage of the annotated genomic feature by RNAseq alignments, including 20 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 36 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 30 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 95% coverage of the annotated genomic feature by RNAseq alignments
zinc finger and SCAN domain-containing protein 12-like
gastrula zinc finger protein xFG20-1-like
zinc finger protein 709-like, transcript variant X2
zinc finger protein 709-like, transcript variant X1
B-cell CLL/lymphoma 6 member B protein-like isoform X1