Coregonus clupeaformis mitochondrion, complete genome.
type: Entry
definition: Coregonus clupeaformis mitochondrion, complete genome.
sequence version: NC_020762.1
sequence date: 2023-04-03
sequence: sequence
division: VRT
label: NC_020762.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA927338
keyword: RefSeq
source: mitochondrion Coregonus clupeaformis (lake whitefish)
organism: Coregonus clupeaformis
taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Coregoninae; Coregonus.
reference: 1
reference: 2
reference: 3
comment: REVIEWED REFSEQ: This record has been curated by NCBI staff. The\nreference sequence is identical to JQ390060.\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000819
sequence length: 16744
topology: circular
so has quality: SO_0000988
location: 1..16744
location: region:1-16744:1
RO_0002162: 59861

NC_020762
type: RefSeq
SIO_000068: refseq

PRJNA927338
type: BioProject
SIO_000068: bioproject

1
title: Evolution of Salmoniformes based on their mitochondrial genomes
author: Lubieniecki, K.P.
author: Saeed, D.
author: So, M.
author: Fujiki, K.
author: Koop, B.F.
author: Davidson, W.S.
journal: Unpublished

2
title: Direct Submission
journal: Submitted (22-MAR-2013) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA

3
title: Direct Submission
author: Lubieniecki, K.P.
author: Saeed, D.
author: So, M.
author: Fujiki, K.
author: Koop, B.F.
author: Davidson, W.S.
journal: Submitted (09-JAN-2012) Molecular Biology and Biochemistry, Simon Fraser University, 8888 University Drive, Burnaby, BC V5A 1S6, Canada

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16744:1
position: 16744
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-16744:1:source
so part of: sequence
organism: Coregonus clupeaformis
organelle: mitochondrion
mol type: genomic DNA

59861
type: Taxonomy
SIO_000068: taxonomy

J409_mgt01
type: Gene
subclass of: SO_0000704
RO_0002162: 59861
locus tag: J409_mgt01
so part of: sequence
location: 1..68
location: region:1-68:1
so has part: feature:1-68:1:exon
subclass of: SO_0000663

79559559
type: Gene
SIO_000068: ncbigene

position:68:1
position: 68
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-68:1:exon

J409_mgt01
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 59861
locus tag: J409_mgt01
product: tRNA-Phe
SIO_010081: J409_mgt01
subclass of: SO_0000673
so part of: J409_mgt01
location: 1..68
location: region:1-68:1
so has part: feature:1-68:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1-68:1:exon

J409_mgr02
type: Gene
subclass of: SO_0000704
RO_0002162: 59861
locus tag: J409_mgr02
so part of: sequence
location: 69..1015
location: region:69-1015:1
so has part: feature:69-1015:1:exon
subclass of: SO_0000573

79559545
type: Gene
SIO_000068: ncbigene

position:69:1
position: 69
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1015:1
position: 1015
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:69-1015:1:exon

J409_mgr02
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 59861
locus tag: J409_mgr02
product: s-rRNA
note: 12S ribosomal RNA
SIO_010081: J409_mgr02
subclass of: SO_0000673
so part of: J409_mgr02
location: 69..1015
location: region:69-1015:1
so has part: feature:69-1015:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:69-1015:1:exon

J409_mgt02
type: Gene
subclass of: SO_0000704
RO_0002162: 59861
locus tag: J409_mgt02
so part of: sequence
location: 1016..1087
location: region:1016-1087:1
so has part: feature:1016-1087:1:exon
subclass of: SO_0000663

79559546
type: Gene
SIO_000068: ncbigene

position:1016:1
position: 1016
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1087:1
position: 1087
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1016-1087:1:exon

J409_mgt02
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 59861
locus tag: J409_mgt02
product: tRNA-Val
SIO_010081: J409_mgt02
subclass of: SO_0000673
so part of: J409_mgt02
location: 1016..1087
location: region:1016-1087:1
so has part: feature:1016-1087:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1016-1087:1:exon

J409_mgr01
type: Gene
subclass of: SO_0000704
RO_0002162: 59861
locus tag: J409_mgr01
so part of: sequence
location: 1088..2766
location: region:1088-2766:1
so has part: feature:1088-2766:1:exon
subclass of: SO_0000573

79559547
type: Gene
SIO_000068: ncbigene

position:1088:1
position: 1088
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2766:1
position: 2766
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1088-2766:1:exon

J409_mgr01
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 59861
locus tag: J409_mgr01
product: l-rRNA
note: 16S ribosomal RNA
SIO_010081: J409_mgr01
subclass of: SO_0000673
so part of: J409_mgr01
location: 1088..2766
location: region:1088-2766:1
so has part: feature:1088-2766:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1088-2766:1:exon

J409_mgt03
type: Gene
subclass of: SO_0000704
RO_0002162: 59861
locus tag: J409_mgt03
so part of: sequence
location: 2767..2841
location: region:2767-2841:1
so has part: feature:2767-2841:1:exon
subclass of: SO_0000663

79559548
type: Gene
SIO_000068: ncbigene

position:2767:1
position: 2767
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2841:1
position: 2841
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2767-2841:1:exon

J409_mgt03
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 59861
locus tag: J409_mgt03
product: tRNA-Leu
codon recognized: UUR
SIO_010081: J409_mgt03
subclass of: SO_0000673
so part of: J409_mgt03
location: 2767..2841
location: region:2767-2841:1
so has part: feature:2767-2841:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2767-2841:1:exon

J409_mgp13
type: Gene
subclass of: SO_0000704
RO_0002162: 59861
alternative label: MTND1
gene: ND1
locus tag: J409_mgp13
gene synonym: MTND1
so part of: sequence
location: 2842..3816
location: region:2842-3816:1
so has part: feature:2842-3816:1:exon
subclass of: SO_0000010

14842644
type: Gene
SIO_000068: ncbigene

position:2842:1
position: 2842
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3816:1
position: 3816
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2842-3816:1:exon

J409_mgp13
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59861
alternative label: MTND1
gene: ND1
locus tag: J409_mgp13
gene synonym: MTND1
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 1
translation: MITTLITHVINPLAYIVPVLLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPVRPSTSSPFLFLATPMLALTLALTLWAPMPIPYPVTDLGLGVLFVLALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLSVIIFTGGFTLQTFNVAQESIWLLVPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNTLSTILFLGASHIPAFPELTAMNLMTKAALLSVVFLWVRASYPRFRYDQLMHLVWKSFLPMTLALVLWHLALPIALAGLPPQL
SIO_010081: J409_mgp13
subclass of: SO_0000673
so part of: J409_mgp13
location: 2842..3816
location: region:2842-3816:1
so has part: feature:2842-3816:1:exon

YP_007626862.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2842-3816:1:exon

J409_mgt04
type: Gene
subclass of: SO_0000704
RO_0002162: 59861
locus tag: J409_mgt04
so part of: sequence
location: 3824..3895
location: region:3824-3895:1
so has part: feature:3824-3895:1:exon
subclass of: SO_0000663

79559536
type: Gene
SIO_000068: ncbigene

position:3824:1
position: 3824
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3895:1
position: 3895
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3824-3895:1:exon

J409_mgt04
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 59861
locus tag: J409_mgt04
product: tRNA-Ile
SIO_010081: J409_mgt04
subclass of: SO_0000673
so part of: J409_mgt04
location: 3824..3895
location: region:3824-3895:1
so has part: feature:3824-3895:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3824-3895:1:exon

J409_mgt05
type: Gene
subclass of: SO_0000704
RO_0002162: 59861
locus tag: J409_mgt05
so part of: sequence
location: complement(3893..3963)
location: region:3893-3963:-1
so has part: feature:3893-3963:-1:exon
subclass of: SO_0000663

79559549
type: Gene
SIO_000068: ncbigene

position:3893:-1
position: 3893
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3963:-1
position: 3963
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3893-3963:-1:exon

J409_mgt05
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 59861
locus tag: J409_mgt05
product: tRNA-Gln
SIO_010081: J409_mgt05
subclass of: SO_0000673
so part of: J409_mgt05
location: complement(3893..3963)
location: region:3893-3963:-1
so has part: feature:3893-3963:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3893-3963:-1:exon

J409_mgt06
type: Gene
subclass of: SO_0000704
RO_0002162: 59861
locus tag: J409_mgt06
so part of: sequence
location: 3963..4031
location: region:3963-4031:1
so has part: feature:3963-4031:1:exon
subclass of: SO_0000663

79559550
type: Gene
SIO_000068: ncbigene

position:3963:1
position: 3963
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4031:1
position: 4031
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3963-4031:1:exon

J409_mgt06
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 59861
locus tag: J409_mgt06
product: tRNA-Met
SIO_010081: J409_mgt06
subclass of: SO_0000673
so part of: J409_mgt06
location: 3963..4031
location: region:3963-4031:1
so has part: feature:3963-4031:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3963-4031:1:exon

J409_mgp12
type: Gene
subclass of: SO_0000704
RO_0002162: 59861
alternative label: MTND2
gene: ND2
locus tag: J409_mgp12
gene synonym: MTND2
so part of: sequence
location: 4032..5081
location: region:4032-5081:1
so has part: feature:4032-5081:1:exon
subclass of: SO_0000010

14842632
type: Gene
SIO_000068: ncbigene

position:4032:1
position: 4032
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5081:1
position: 5081
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4032-5081:1:exon

J409_mgp12
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59861
alternative label: MTND2
gene: ND2
locus tag: J409_mgp12
gene synonym: MTND2
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 2
translation: MNPYVLTILLSSLGLGTVLTFASSHWLLAWMGLEINTLAIIPLMARQYHPRAVEATTKYFLTQATAAAMILFASTTNAWLVGEWDIQQLTHPIAATTAMLALALKVGLAPVHFWLPEVLQGLDLTTGLILSTWQKLAPFALMLQVAPTVNSSLVVTLGLLSTLVGGWGGLNQTQLRKILAYSSIAHLGWMVLIMQFAPSLTLLSLIMYIIMTSSAFMTLKTNNSLTINALAISWTKAPALAALAILVLLSLGGLPPLSGFMPKWLILQELTKQGLPMSATLAAMTALLSLYFYLRLCYAMTLTIWPNTLAATTPWRLDFTHITLPLSLVTMLALGLLPLTPAMAALLNL
SIO_010081: J409_mgp12
subclass of: SO_0000673
so part of: J409_mgp12
location: 4032..5081
location: region:4032-5081:1
so has part: feature:4032-5081:1:exon

YP_007626863.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4032-5081:1:exon

J409_mgt07
type: Gene
subclass of: SO_0000704
RO_0002162: 59861
locus tag: J409_mgt07
so part of: sequence
location: 5083..5154
location: region:5083-5154:1
so has part: feature:5083-5154:1:exon
subclass of: SO_0000663

79559537
type: Gene
SIO_000068: ncbigene

position:5083:1
position: 5083
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5154:1
position: 5154
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5083-5154:1:exon

J409_mgt07
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 59861
locus tag: J409_mgt07
product: tRNA-Trp
SIO_010081: J409_mgt07
subclass of: SO_0000673
so part of: J409_mgt07
location: 5083..5154
location: region:5083-5154:1
so has part: feature:5083-5154:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5083-5154:1:exon

J409_mgt08
type: Gene
subclass of: SO_0000704
RO_0002162: 59861
locus tag: J409_mgt08
so part of: sequence
location: complement(5156..5224)
location: region:5156-5224:-1
so has part: feature:5156-5224:-1:exon
subclass of: SO_0000663

79559551
type: Gene
SIO_000068: ncbigene

position:5156:-1
position: 5156
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5224:-1
position: 5224
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5156-5224:-1:exon

J409_mgt08
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 59861
locus tag: J409_mgt08
product: tRNA-Ala
SIO_010081: J409_mgt08
subclass of: SO_0000673
so part of: J409_mgt08
location: complement(5156..5224)
location: region:5156-5224:-1
so has part: feature:5156-5224:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5156-5224:-1:exon

J409_mgt09
type: Gene
subclass of: SO_0000704
RO_0002162: 59861
locus tag: J409_mgt09
so part of: sequence
location: complement(5226..5298)
location: region:5226-5298:-1
so has part: feature:5226-5298:-1:exon
subclass of: SO_0000663

79559552
type: Gene
SIO_000068: ncbigene

position:5226:-1
position: 5226
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5298:-1
position: 5298
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5226-5298:-1:exon

J409_mgt09
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 59861
locus tag: J409_mgt09
product: tRNA-Asn
SIO_010081: J409_mgt09
subclass of: SO_0000673
so part of: J409_mgt09
location: complement(5226..5298)
location: region:5226-5298:-1
so has part: feature:5226-5298:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5226-5298:-1:exon

J409_mgt10
type: Gene
subclass of: SO_0000704
RO_0002162: 59861
locus tag: J409_mgt10
so part of: sequence
location: complement(5333..5400)
location: region:5333-5400:-1
so has part: feature:5333-5400:-1:exon
subclass of: SO_0000663

79559553
type: Gene
SIO_000068: ncbigene

position:5333:-1
position: 5333
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5400:-1
position: 5400
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5333-5400:-1:exon

J409_mgt10
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 59861
locus tag: J409_mgt10
product: tRNA-Cys
SIO_010081: J409_mgt10
subclass of: SO_0000673
so part of: J409_mgt10
location: complement(5333..5400)
location: region:5333-5400:-1
so has part: feature:5333-5400:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5333-5400:-1:exon

J409_mgt11
type: Gene
subclass of: SO_0000704
RO_0002162: 59861
locus tag: J409_mgt11
so part of: sequence
location: complement(5401..5470)
location: region:5401-5470:-1
so has part: feature:5401-5470:-1:exon
subclass of: SO_0000663

79559554
type: Gene
SIO_000068: ncbigene

position:5401:-1
position: 5401
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5470:-1
position: 5470
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5401-5470:-1:exon

J409_mgt11
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 59861
locus tag: J409_mgt11
product: tRNA-Tyr
SIO_010081: J409_mgt11
subclass of: SO_0000673
so part of: J409_mgt11
location: complement(5401..5470)
location: region:5401-5470:-1
so has part: feature:5401-5470:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5401-5470:-1:exon

J409_mgp11
type: Gene
subclass of: SO_0000704
RO_0002162: 59861
alternative label: MTCO1
gene: COX1
locus tag: J409_mgp11
gene synonym: MTCO1
so part of: sequence
location: 5472..7022
location: region:5472-7022:1
so has part: feature:5472-7022:1:exon
subclass of: SO_0000010

14842633
type: Gene
SIO_000068: ncbigene

position:5472:1
position: 5472
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7022:1
position: 7022
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5472-7022:1:exon

J409_mgp11
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59861
alternative label: MTCO1
gene: COX1
locus tag: J409_mgp11
gene synonym: MTCO1
codon start: 1
transl table: 2
product: cytochrome c oxidase subunit I
translation: MAITRWFFSTNHKDIGTLYLVFGAWAGMVGTALSLLIRAELSQPGALLGDDQIYNVIVTAHAFVMIFFMVMPIMIGGFGNWLIPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSGVEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGISSILGAVNFITTIINMKPPAISQYQTPLFVWAVLITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISHIVAYYSGKKEPFGYMGMVWAMMAIGLLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGGSIKWETPLLWALGFIFLFTVGGLTGIVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFAIMGAFVHWFPLFTGYTLHSTWTKIHFGIMFIGVNLTFFPQHFLGLAGMPRRYSDYPDAYTLWNTVSSIGSLISLVAVIMFLFILWEAFAAKREVASIELTSTNVEWLHGCPPPYHTFEEPAFVQVQAA
SIO_010081: J409_mgp11
subclass of: SO_0000673
so part of: J409_mgp11
location: 5472..7022
location: region:5472-7022:1
so has part: feature:5472-7022:1:exon

YP_007626864.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5472-7022:1:exon

J409_mgt12
type: Gene
subclass of: SO_0000704
RO_0002162: 59861
locus tag: J409_mgt12
so part of: sequence
location: complement(7023..7093)
location: region:7023-7093:-1
so has part: feature:7023-7093:-1:exon
subclass of: SO_0000663

79559538
type: Gene
SIO_000068: ncbigene

position:7023:-1
position: 7023
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7093:-1
position: 7093
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7023-7093:-1:exon

J409_mgt12
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 59861
locus tag: J409_mgt12
product: tRNA-Ser
codon recognized: UCN
SIO_010081: J409_mgt12
subclass of: SO_0000673
so part of: J409_mgt12
location: complement(7023..7093)
location: region:7023-7093:-1
so has part: feature:7023-7093:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:7023-7093:-1:exon

J409_mgt13
type: Gene
subclass of: SO_0000704
RO_0002162: 59861
locus tag: J409_mgt13
so part of: sequence
location: 7098..7171
location: region:7098-7171:1
so has part: feature:7098-7171:1:exon
subclass of: SO_0000663

79559555
type: Gene
SIO_000068: ncbigene

position:7098:1
position: 7098
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7171:1
position: 7171
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7098-7171:1:exon

J409_mgt13
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 59861
locus tag: J409_mgt13
product: tRNA-Asp
SIO_010081: J409_mgt13
subclass of: SO_0000673
so part of: J409_mgt13
location: 7098..7171
location: region:7098-7171:1
so has part: feature:7098-7171:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:7098-7171:1:exon

J409_mgp10
type: Gene
subclass of: SO_0000704
RO_0002162: 59861
alternative label: MTCO2
gene: COX2
locus tag: J409_mgp10
gene synonym: MTCO2
so part of: sequence
location: 7186..7876
location: region:7186-7876:1
so has part: feature:7186-7876:1:exon
subclass of: SO_0000010

14842634
type: Gene
SIO_000068: ncbigene

position:7186:1
position: 7186
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7876:1
position: 7876
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7186-7876:1:exon

J409_mgp10
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59861
alternative label: MTCO2
gene: COX2
locus tag: J409_mgp10
gene synonym: MTCO2
note: TAA stop codon is completed by the addition of 3' A residues; TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:7876,aa:TERM)
transl table: 2
product: cytochrome c oxidase subunit II
translation: MAHPSQLGFQDAASPVMEELLHFHDHALMIVLLISTLVLYIIVAMVSTKLTNKYILDSQEIEIVWTILPAVILILIALPSLRILYLMDEINDPHLTIKAMGHQWYWSYEYTDYEDLGFDSYMIPTQDLIPGQFRLLEADHRMVVPVESPIRVLISAEDVLHSWAVPSLGVKMDAVPGRLNQTAFIASRPGVFYGQCSEICGANHSFMPIVVEAVPLEHFEKWSTMMLEDA
SIO_010081: J409_mgp10
subclass of: SO_0000673
so part of: J409_mgp10
location: 7186..7876
location: region:7186-7876:1
so has part: feature:7186-7876:1:exon

YP_007626865.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7186-7876:1:exon

J409_mgt14
type: Gene
subclass of: SO_0000704
RO_0002162: 59861
locus tag: J409_mgt14
so part of: sequence
location: 7877..7950
location: region:7877-7950:1
so has part: feature:7877-7950:1:exon
subclass of: SO_0000663

79559539
type: Gene
SIO_000068: ncbigene

position:7877:1
position: 7877
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7950:1
position: 7950
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7877-7950:1:exon

J409_mgt14
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 59861
locus tag: J409_mgt14
product: tRNA-Lys
SIO_010081: J409_mgt14
subclass of: SO_0000673
so part of: J409_mgt14
location: 7877..7950
location: region:7877-7950:1
so has part: feature:7877-7950:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:7877-7950:1:exon

J409_mgp09
type: Gene
subclass of: SO_0000704
RO_0002162: 59861
alternative label: MTATP8
gene: ATP8
locus tag: J409_mgp09
gene synonym: MTATP8
so part of: sequence
location: 7952..8119
location: region:7952-8119:1
so has part: feature:7952-8119:1:exon
subclass of: SO_0000010

14842635
type: Gene
SIO_000068: ncbigene

position:7952:1
position: 7952
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8119:1
position: 8119
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7952-8119:1:exon

J409_mgp09
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59861
alternative label: MTATP8
gene: ATP8
locus tag: J409_mgp09
gene synonym: MTATP8
codon start: 1
transl table: 2
product: ATP synthase F0 subunit 8
translation: MPQLNPAPWFAILVFSWLVFLTVIPPKVLGHTFTNEPTSQSTEKAKPEPWNWPWH
SIO_010081: J409_mgp09
subclass of: SO_0000673
so part of: J409_mgp09
location: 7952..8119
location: region:7952-8119:1
so has part: feature:7952-8119:1:exon

YP_007626866.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7952-8119:1:exon

J409_mgp08
type: Gene
subclass of: SO_0000704
RO_0002162: 59861
alternative label: MTATP6
gene: ATP6
locus tag: J409_mgp08
gene synonym: MTATP6
so part of: sequence
location: 8110..8793
location: region:8110-8793:1
so has part: feature:8110-8793:1:exon
subclass of: SO_0000010

14842636
type: Gene
SIO_000068: ncbigene

position:8110:1
position: 8110
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8793:1
position: 8793
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8110-8793:1:exon

J409_mgp08
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59861
alternative label: MTATP6
gene: ATP6
locus tag: J409_mgp08
gene synonym: MTATP6
codon start: 1
transl table: 2
product: ATP synthase F0 subunit 6
translation: MTLSFFDQFMSPTYLGIPLIAVALTLPWILFPTPSARWLNNRLITLQGWFINRFTQQLLLPLNLGGHKWAVMLTSLMLFLITLNMLGLLPYTFTPTTQLSLNMGLAVPLWLATVIIGMRNQPTAALGHLLPEGTPVPLIPVLIIIETISLFIRPLALGVRLTANLTAGHLLIQLIATAAFVLLPLMPTVAILTAIVLFLLTLLEIAVAMIQAYVFVLLLSLYLQENV
SIO_010081: J409_mgp08
subclass of: SO_0000673
so part of: J409_mgp08
location: 8110..8793
location: region:8110-8793:1
so has part: feature:8110-8793:1:exon

YP_007626867.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8110-8793:1:exon

J409_mgp07
type: Gene
subclass of: SO_0000704
RO_0002162: 59861
alternative label: MTCO3
gene: COX3
locus tag: J409_mgp07
gene synonym: MTCO3
so part of: sequence
location: 8793..9577
location: region:8793-9577:1
so has part: feature:8793-9577:1:exon
subclass of: SO_0000010

14842637
type: Gene
SIO_000068: ncbigene

position:9577:1
position: 9577
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8793-9577:1:exon

J409_mgp07
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59861
alternative label: MTCO3
gene: COX3
locus tag: J409_mgp07
gene synonym: MTCO3
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:9576..9577,aa:TERM)
transl table: 2
product: cytochrome c oxidase subunit III
translation: MAHQAHAYHMVDPSPWPLTGAIAALLLTSGTAVWFHFHSLTLLAMGNILMLLTMYQWWRDIIREGTFQGHHTPPVQKGLRYGMVLFITSEVFFFLGFFWAFYHSSLAPTPELGGCWPPTGIITLDPFEVPLLNTAVLLASGVTVTWAHHSIMEGERKQAIQSLTLTILLGFYFTFLQGMEYYEAPFTIADGVYGSTFFVATGFHGLHVIIGSTFLAVCLLRQIQYHFTSEHHFGFEAAAWYWHFVDVVWLFLYVSIYWWGS
SIO_010081: J409_mgp07
subclass of: SO_0000673
so part of: J409_mgp07
location: 8793..9577
location: region:8793-9577:1
so has part: feature:8793-9577:1:exon

YP_007626868.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8793-9577:1:exon

J409_mgt15
type: Gene
subclass of: SO_0000704
RO_0002162: 59861
locus tag: J409_mgt15
so part of: sequence
location: 9578..9647
location: region:9578-9647:1
so has part: feature:9578-9647:1:exon
subclass of: SO_0000663

79559540
type: Gene
SIO_000068: ncbigene

position:9578:1
position: 9578
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9647:1
position: 9647
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9578-9647:1:exon

J409_mgt15
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 59861
locus tag: J409_mgt15
product: tRNA-Gly
SIO_010081: J409_mgt15
subclass of: SO_0000673
so part of: J409_mgt15
location: 9578..9647
location: region:9578-9647:1
so has part: feature:9578-9647:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:9578-9647:1:exon

J409_mgp06
type: Gene
subclass of: SO_0000704
RO_0002162: 59861
alternative label: MTND3
gene: ND3
locus tag: J409_mgp06
gene synonym: MTND3
so part of: sequence
location: 9648..9996
location: region:9648-9996:1
so has part: feature:9648-9996:1:exon
subclass of: SO_0000010

14842638
type: Gene
SIO_000068: ncbigene

position:9648:1
position: 9648
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9996:1
position: 9996
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9648-9996:1:exon

J409_mgp06
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59861
alternative label: MTND3
gene: ND3
locus tag: J409_mgp06
gene synonym: MTND3
note: TAA stop codon is completed by the addition of 3' A residues; TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:9996,aa:TERM)
transl table: 2
product: NADH dehydrogenase subunit 3
translation: MNLITTIVTITIALSMVLATVSFWLPQITPDAEKLSPYECGFDPLGSARLPFSLRFFLIAILFLLFDLEIALLLPLPWGDQLDTPTLTLAWSAAVLALLTLGLIYEWTQGGLEWAE
SIO_010081: J409_mgp06
subclass of: SO_0000673
so part of: J409_mgp06
location: 9648..9996
location: region:9648-9996:1
so has part: feature:9648-9996:1:exon

YP_007626869.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9648-9996:1:exon

J409_mgt16
type: Gene
subclass of: SO_0000704
RO_0002162: 59861
locus tag: J409_mgt16
so part of: sequence
location: 9997..10067
location: region:9997-10067:1
so has part: feature:9997-10067:1:exon
subclass of: SO_0000663

79559541
type: Gene
SIO_000068: ncbigene

position:9997:1
position: 9997
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10067:1
position: 10067
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9997-10067:1:exon

J409_mgt16
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 59861
locus tag: J409_mgt16
product: tRNA-Arg
SIO_010081: J409_mgt16
subclass of: SO_0000673
so part of: J409_mgt16
location: 9997..10067
location: region:9997-10067:1
so has part: feature:9997-10067:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:9997-10067:1:exon

J409_mgp05
type: Gene
subclass of: SO_0000704
RO_0002162: 59861
alternative label: MTND4L
gene: ND4L
locus tag: J409_mgp05
gene synonym: MTND4L
so part of: sequence
location: 10068..10364
location: region:10068-10364:1
so has part: feature:10068-10364:1:exon
subclass of: SO_0000010

14842639
type: Gene
SIO_000068: ncbigene

position:10068:1
position: 10068
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10364:1
position: 10364
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10068-10364:1:exon

J409_mgp05
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59861
alternative label: MTND4L
gene: ND4L
locus tag: J409_mgp05
gene synonym: MTND4L
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 4L
translation: MTPVHFSFTSAFVLGLMGLAFHRTHLLSALLCLEGMMLSLFIALSLWALQMEATGYSVAPMLLLAFSACEASAGLALLVATARTHGTDRLQSLNLLQC
SIO_010081: J409_mgp05
subclass of: SO_0000673
so part of: J409_mgp05
location: 10068..10364
location: region:10068-10364:1
so has part: feature:10068-10364:1:exon

YP_007626870.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10068-10364:1:exon

J409_mgp04
type: Gene
subclass of: SO_0000704
RO_0002162: 59861
alternative label: MTND4L
gene: ND4
locus tag: J409_mgp04
gene synonym: MTND4L
so part of: sequence
location: 10358..11738
location: region:10358-11738:1
so has part: feature:10358-11738:1:exon
subclass of: SO_0000010

14842640
type: Gene
SIO_000068: ncbigene

position:10358:1
position: 10358
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11738:1
position: 11738
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10358-11738:1:exon

J409_mgp04
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59861
alternative label: MTND4L
gene: ND4
locus tag: J409_mgp04
gene synonym: MTND4L
note: TAA stop codon is completed by the addition of 3' A residues; TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:11738,aa:TERM)
transl table: 2
product: NADH dehydrogenase subunit 4
translation: MLKILIPTLMLFPTIWLSPAKWLWATSTAQSLLIALASLSWLKWSSETGWTSSNLYLATDPLSTPLLVLTCWLLPLMILASQNHINPEPLSRQRTYISLLVSLQMFLILAFGATEIIMFYIMFEATLLPTLIIITRWGNQTERLSAGTYFLFYTLAGSLPLLVALLLLQNDNGTLSMLTLQYTQPLHLLTWGDKLWWAACLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRMMIMLDPLTKELAYPFIVLALWGIIMTGSICLRQTDLKSLIAYSSVGHMGLVAGGILVQTPWGFTGAIILMIAHGLASSALFCLANTSYERTHSRTMLLARGMQMILPLMTTWWFVASLANLALPPLPNLMGELMIITTMFNWSHWTLLLTGVGTLITASYSLYLFLMTQRGPLPSHIIALEPTHTREHLLITLHLIPIILLILKPELMWGWCF
SIO_010081: J409_mgp04
subclass of: SO_0000673
so part of: J409_mgp04
location: 10358..11738
location: region:10358-11738:1
so has part: feature:10358-11738:1:exon

YP_007626871.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10358-11738:1:exon

J409_mgt17
type: Gene
subclass of: SO_0000704
RO_0002162: 59861
locus tag: J409_mgt17
so part of: sequence
location: 11739..11807
location: region:11739-11807:1
so has part: feature:11739-11807:1:exon
subclass of: SO_0000663

79559542
type: Gene
SIO_000068: ncbigene

position:11739:1
position: 11739
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11807:1
position: 11807
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11739-11807:1:exon

J409_mgt17
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 59861
locus tag: J409_mgt17
product: tRNA-His
SIO_010081: J409_mgt17
subclass of: SO_0000673
so part of: J409_mgt17
location: 11739..11807
location: region:11739-11807:1
so has part: feature:11739-11807:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:11739-11807:1:exon

J409_mgt18
type: Gene
subclass of: SO_0000704
RO_0002162: 59861
locus tag: J409_mgt18
so part of: sequence
location: 11808..11876
location: region:11808-11876:1
so has part: feature:11808-11876:1:exon
subclass of: SO_0000663

79559556
type: Gene
SIO_000068: ncbigene

position:11808:1
position: 11808
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11876:1
position: 11876
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11808-11876:1:exon

J409_mgt18
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 59861
locus tag: J409_mgt18
product: tRNA-Ser
codon recognized: AGY
SIO_010081: J409_mgt18
subclass of: SO_0000673
so part of: J409_mgt18
location: 11808..11876
location: region:11808-11876:1
so has part: feature:11808-11876:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:11808-11876:1:exon

J409_mgt19
type: Gene
subclass of: SO_0000704
RO_0002162: 59861
locus tag: J409_mgt19
so part of: sequence
location: 11878..11950
location: region:11878-11950:1
so has part: feature:11878-11950:1:exon
subclass of: SO_0000663

79559557
type: Gene
SIO_000068: ncbigene

position:11878:1
position: 11878
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11950:1
position: 11950
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11878-11950:1:exon

J409_mgt19
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 59861
locus tag: J409_mgt19
product: tRNA-Leu
codon recognized: CUN
SIO_010081: J409_mgt19
subclass of: SO_0000673
so part of: J409_mgt19
location: 11878..11950
location: region:11878-11950:1
so has part: feature:11878-11950:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:11878-11950:1:exon

J409_mgp03
type: Gene
subclass of: SO_0000704
RO_0002162: 59861
alternative label: MTND5
gene: ND5
locus tag: J409_mgp03
gene synonym: MTND5
so part of: sequence
location: 11951..13789
location: region:11951-13789:1
so has part: feature:11951-13789:1:exon
subclass of: SO_0000010

14842641
type: Gene
SIO_000068: ncbigene

position:11951:1
position: 11951
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13789:1
position: 13789
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11951-13789:1:exon

J409_mgp03
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59861
alternative label: MTND5
gene: ND5
locus tag: J409_mgp03
gene synonym: MTND5
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 5
translation: MHPTTLILSSTLLMILALLIYPLLTTLDPNQRPGNWALTHVKTSVKMAFLVSLLPLFIFLDQGTETIVTNWQWMNTSTFDVNLSFKFDHYSIIFTPIALYVTWSILEFASWYMHADPNMNRFFKYLLLFLVAMIVLVTANNMFQLFIGWEGVGIMSFLLIGWWYGRADANTAAMQAVVYNRVGDIGLILSMAWFATNLNSWEIQQMFASSKDLDLTLPLMGLILAATGKSAQFGLHPWLPSAMEGPTPVSALLHSSTMVVAGIFLLIRLHPLMENNQTALTTCLCLGALTTLFTATCALTQNDIKKIVAFSTSSQLGLMMVTIGLNQPQLAFPHICTHAFFKAMLLLCSGSIIHSLNDEQDIRKMGGMHNLTPLTSSCLTIGSLALTGTPFLAGFFSKDAIIEALNTSHLNAWALTLTLLATSFTAVYSLRVVFFVSMGHPRFTAISPINENNPSVINPIKRLAWGSIVAGLLITSNFLPSKTPVMTMPPALKLAALLVTILGLLVALELASLTSKQFKTTPNLVTHNFSNMLGFFPAIVHRLAPKLNLTLGQAIASQMVDQTWFEKIGPKGVVSTHLPMITTTSNMQQGMIKTYLTLFFLSTTLAVLLTST
SIO_010081: J409_mgp03
subclass of: SO_0000673
so part of: J409_mgp03
location: 11951..13789
location: region:11951-13789:1
so has part: feature:11951-13789:1:exon

YP_007626872.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11951-13789:1:exon

J409_mgp02
type: Gene
subclass of: SO_0000704
RO_0002162: 59861
alternative label: MTND6
gene: ND6
locus tag: J409_mgp02
gene synonym: MTND6
so part of: sequence
location: complement(13786..14307)
location: region:13786-14307:-1
so has part: feature:13786-14307:-1:exon
subclass of: SO_0000010

14842642
type: Gene
SIO_000068: ncbigene

position:13786:-1
position: 13786
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14307:-1
position: 14307
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13786-14307:-1:exon

J409_mgp02
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59861
alternative label: MTND6
gene: ND6
locus tag: J409_mgp02
gene synonym: MTND6
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 6
translation: MTYLVSLFLLGLVLGLVAVASNPAPYFAALGLVVAAGVGCGVLVGHGGSFLSLVLFLIYLGGMLVVFAYSAALAAEPFPESWGDRSVLGYVVAYVVGVALVAGWFWGGWYETSWVAVDEFKEFSVVRGDTSGVALMYSSGGGLLVVCAWVLLLTLFVVLELTRGLSRGALRAV
SIO_010081: J409_mgp02
subclass of: SO_0000673
so part of: J409_mgp02
location: complement(13786..14307)
location: region:13786-14307:-1
so has part: feature:13786-14307:-1:exon

YP_007626873.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13786-14307:-1:exon

J409_mgt20
type: Gene
subclass of: SO_0000704
RO_0002162: 59861
locus tag: J409_mgt20
so part of: sequence
location: complement(14308..14376)
location: region:14308-14376:-1
so has part: feature:14308-14376:-1:exon
subclass of: SO_0000663

79559543
type: Gene
SIO_000068: ncbigene

position:14308:-1
position: 14308
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14376:-1
position: 14376
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14308-14376:-1:exon

J409_mgt20
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 59861
locus tag: J409_mgt20
product: tRNA-Glu
SIO_010081: J409_mgt20
subclass of: SO_0000673
so part of: J409_mgt20
location: complement(14308..14376)
location: region:14308-14376:-1
so has part: feature:14308-14376:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:14308-14376:-1:exon

J409_mgp01
type: Gene
subclass of: SO_0000704
RO_0002162: 59861
alternative label: MTCYB
gene: CYTB
locus tag: J409_mgp01
gene synonym: MTCYB
so part of: sequence
location: 14380..15520
location: region:14380-15520:1
so has part: feature:14380-15520:1:exon
subclass of: SO_0000010

14842643
type: Gene
SIO_000068: ncbigene

position:14380:1
position: 14380
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15520:1
position: 15520
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14380-15520:1:exon

J409_mgp01
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59861
alternative label: MTCYB
gene: CYTB
locus tag: J409_mgp01
gene synonym: MTCYB
note: TAA stop codon is completed by the addition of 3' A residues; TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:15520,aa:TERM)
transl table: 2
product: cytochrome b
translation: MANLRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLATQILTGLFLAMHYTSDISTAFSSVCHICRDVSYGWLIRNIHANGASFFFICIYMHIARGLYYGSYLYKETWNIGVVLLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGGALVQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATVIHLLFLHETGSNNPAGINSDADKISFHPYFSYKDLLGFVAMLLGLTSLALFAPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQFLFWTLVADMLILTWIGGMPVEHPFIIIGQVASVIYFTIFLVLAPLAGWAENKALEWA
SIO_010081: J409_mgp01
subclass of: SO_0000673
so part of: J409_mgp01
location: 14380..15520
location: region:14380-15520:1
so has part: feature:14380-15520:1:exon

YP_007626874.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14380-15520:1:exon

J409_mgt21
type: Gene
subclass of: SO_0000704
RO_0002162: 59861
locus tag: J409_mgt21
so part of: sequence
location: 15521..15592
location: region:15521-15592:1
so has part: feature:15521-15592:1:exon
subclass of: SO_0000663

79559544
type: Gene
SIO_000068: ncbigene

position:15521:1
position: 15521
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15592:1
position: 15592
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15521-15592:1:exon

J409_mgt21
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 59861
locus tag: J409_mgt21
product: tRNA-Thr
SIO_010081: J409_mgt21
subclass of: SO_0000673
so part of: J409_mgt21
location: 15521..15592
location: region:15521-15592:1
so has part: feature:15521-15592:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:15521-15592:1:exon

J409_mgt22
type: Gene
subclass of: SO_0000704
RO_0002162: 59861
locus tag: J409_mgt22
so part of: sequence
location: complement(15592..15661)
location: region:15592-15661:-1
so has part: feature:15592-15661:-1:exon
subclass of: SO_0000663

79559558
type: Gene
SIO_000068: ncbigene

position:15592:-1
position: 15592
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15661:-1
position: 15661
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15592-15661:-1:exon

J409_mgt22
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 59861
locus tag: J409_mgt22
product: tRNA-Pro
SIO_010081: J409_mgt22
subclass of: SO_0000673
so part of: J409_mgt22
location: complement(15592..15661)
location: region:15592-15661:-1
so has part: feature:15592-15661:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:15592-15661:-1:exon

D-loop
type: Displacement Loop
subclass of: SO_0000297
RO_0002162: 59861
note: control region
so part of: sequence
location: 15662..16744
location: region:15662-16744:1
so has part: feature:15662-16744:1:region

position:15662:1
position: 15662
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15662-16744:1:region