Paracoccus marcusii strain CP157 plasmid pCP157_10, complete sequence.
type: Entry
definition: Paracoccus marcusii strain CP157 plasmid pCP157_10, complete sequence.
sequence version: NZ_CP065902.1
sequence date: 2023-03-25
sequence: sequence
division: CON
label: NZ_CP065902.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN16776174
keyword: RefSeq
source: Paracoccus marcusii
organism: Paracoccus marcusii
taxonomy: Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodobacterales; Paracoccaceae; Paracoccus.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP065902.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\nThis genome has a base modification file available.\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP SMRTPortal v. 2.3.0\nGenome Coverage :: 65x\nSequencing Technology :: PacBio; Illumina MiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/25/2023 06:10:02\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,059\nCDSs (total) :: 3,997\nGenes (coding) :: 3,913\nCDSs (with protein) :: 3,913\nGenes (RNA) :: 62\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 50\nncRNAs :: 3\nPseudo Genes (total) :: 84\nCDSs (without protein) :: 84\nPseudo Genes (ambiguous residues) :: 0 of 84\nPseudo Genes (frameshifted) :: 47 of 84\nPseudo Genes (incomplete) :: 43 of 84\nPseudo Genes (internal stop) :: 20 of 84\nPseudo Genes (multiple problems) :: 23 of 84\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 11211
topology: circular
so has quality: SO_0000988
location: 1..11211
location: region:1-11211:1
RO_0002162: 59779

NZ_CP065902
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN16776174
type: BioSample
SIO_000068: biosample

1
title: High Potential for Secondary Metabolite Production of Paracoccus marcusii CP157, Isolated From the Crustacean Cancer pagurus
author: Leinberger, J.
author: Holste, J.
author: Bunk, B.
author: Freese, H.M.
author: Sproeer, C.
author: Dlugosch, L.
author: Kueck, A.-C.
author: Schulz, S.
author: Brinkhoff, T.
journal: Front Microbiol 12 (2021)

2
title: Direct Submission
author: Leinberger, J.
author: Brinkhoff, T.
author: Bunk, B.
author: Freese, H.M.
journal: Submitted (10-DEC-2020) Institute for Chemistry and Biology of the Marine Environment, University of Oldenburg, Carl-von-Ossietzky Strasse 9-11, Oldenburg 26129, Germany

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11211:1
position: 11211
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-11211:1:source
so part of: sequence
organism: Paracoccus marcusii
mol type: genomic DNA
strain: CP157
isolation source: carapace
host: Cancer pagurus
plasmid: pCP157_10
country: Germany: Helgoland
lat lon: 54.12 N 7.53 E
collection date: 2014-10-15

59779
type: Taxonomy
SIO_000068: taxonomy

CP157_RS19720
type: Gene
subclass of: SO_0000704
RO_0002162: 59779
locus tag: CP157_RS19720
old locus tag: CP157_03966
so part of: sequence
location: 1..543
location: region:1-543:1
so has part: feature:1-543:1:exon
subclass of: SO_0000010

position:543:1
position: 543
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-543:1:exon

CP157_RS19720
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59779
locus tag: CP157_RS19720
old locus tag: CP157_03966
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006115964.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix domain-containing protein
translation: MSKLPEKKTRGTWVQTERAAHEEWAQLIIRAPKAAAVMHILTARMGDNNAVVISQRELQTATGISRPTVQRALATLRDENWIEVWQVGESGTVNAYVVNDRVAWHGSRDGIRRSLFTATVAVSEAEQKNTSRIGESTPLHRVPSVFSGEMQLPSGEGLPPVSQPFFDGMEPDLPAMIVGE
SIO_010081: CP157_RS19720
subclass of: SO_0000673
so part of: CP157_RS19720
location: 1..543
location: region:1-543:1
so has part: feature:1-543:1:exon

WP_217847049.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1-543:1:exon

CP157_RS19725
type: Gene
subclass of: SO_0000704
RO_0002162: 59779
locus tag: CP157_RS19725
so part of: sequence
location: 608..1039
location: region:608-1039:1
so has part: feature:608-1039:1:exon
subclass of: SO_0000010

position:608:1
position: 608
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1039:1
position: 1039
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:608-1039:1:exon

CP157_RS19725
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59779
locus tag: CP157_RS19725
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MQYSANQAAEVTGKNVATITRAIKSGKISATKDTSGSWQIDGAELSRVYPLHAQTLQIPTMQKNANAAQRDNFTEANALREELAALRERDKLKDTLLENYVAQMADLKEDRDKWRQQATNLLANQEAEPVAPASVKRRRWWPF
SIO_010081: CP157_RS19725
subclass of: SO_0000673
so part of: CP157_RS19725
location: 608..1039
location: region:608-1039:1
so has part: feature:608-1039:1:exon

WP_157001706.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:608-1039:1:exon

CP157_RS19730
type: Gene
subclass of: SO_0000704
RO_0002162: 59779
locus tag: CP157_RS19730
old locus tag: CP157_03967
so part of: sequence
location: 1495..1719
location: region:1495-1719:1
so has part: feature:1495-1719:1:exon
subclass of: SO_0000010

position:1495:1
position: 1495
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1719:1
position: 1719
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1495-1719:1:exon

CP157_RS19730
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59779
locus tag: CP157_RS19730
old locus tag: CP157_03967
inference: COORDINATES: protein motif:HMM:NF017691.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MCRPILIGLLLLPVPALSQECHPSYARVCVPVASDVDCASGSGNGPEYVQGPVEVVGPDVYDLDRDGDGIACEN
SIO_010081: CP157_RS19730
subclass of: SO_0000673
so part of: CP157_RS19730
location: 1495..1719
location: region:1495-1719:1
so has part: feature:1495-1719:1:exon

WP_084697655.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1495-1719:1:exon

CP157_RS19735
type: Gene
subclass of: SO_0000704
RO_0002162: 59779
locus tag: CP157_RS19735
old locus tag: CP157_03968
so part of: sequence
location: complement(2558..3490)
location: region:2558-3490:-1
so has part: feature:2558-3490:-1:exon
subclass of: SO_0000010

position:2558:-1
position: 2558
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3490:-1
position: 3490
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2558-3490:-1:exon

CP157_RS19735
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59779
locus tag: CP157_RS19735
old locus tag: CP157_03968
inference: COORDINATES: similar to AA sequence:RefSeq:WP_060835708.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS5 family transposase
translation: MPKPSPIRYRTTNWSDYNAALRKRGSLSVWFDPETVWHADKTGKRGRPETFSDAAIQTCLTLKVLFGLPLRQTVGLVESLIQMAGLDWPVPDYSTLCRRQARIAVQVPYRASGQPLNLLIDSTGIKFRGDGEWQARKHGPSRRRQWRKVHLAMDAGTGDVRAVELTSSRQGDSPLLPELLAQIPPEETIGTVTADGAYDTRRCHGAIIDRGADAVIPIRRNGRAWKEDCPAAAARNEILRATRRLGRALWKKWTGYHVRSRVEALMNCLKLFGERIMSRDPARQTAEIQIRIAIMNRFSALGRAEIEAVR
SIO_010081: CP157_RS19735
subclass of: SO_0000673
so part of: CP157_RS19735
location: complement(2558..3490)
location: region:2558-3490:-1
so has part: feature:2558-3490:-1:exon

WP_045984280.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2558-3490:-1:exon

CP157_RS19740
type: Gene
subclass of: SO_0000704
RO_0002162: 59779
locus tag: CP157_RS19740
old locus tag: CP157_03969
so part of: sequence
location: complement(3553..4182)
location: region:3553-4182:-1
so has part: feature:3553-4182:-1:exon
subclass of: SO_0000010

position:3553:-1
position: 3553
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4182:-1
position: 4182
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3553-4182:-1:exon

CP157_RS19740
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59779
locus tag: CP157_RS19740
old locus tag: CP157_03969
inference: COORDINATES: protein motif:HMM:NF022760.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: glycosyltransferase
translation: MRIVGICRYSLLGRGDWHAYRGKTDAEVEAVAREQAKLLFAKDRMNARLESFEHLTLASLRAQTDQDYTFIVLASEMMPKIYRDKLLSLCKDMPNVLVRFFPLSNAIEAQAKVYTELGLTYRDTVQFRLDDDDCLCRTFIQMLRYHAEKFDEPLPFAISVSSFLYAVSGGSGKGVYDWQTPFLGAGAAVWHPHKSIYAFGHFALGVRFP
SIO_010081: CP157_RS19740
subclass of: SO_0000673
so part of: CP157_RS19740
location: complement(3553..4182)
location: region:3553-4182:-1
so has part: feature:3553-4182:-1:exon

WP_217847050.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3553-4182:-1:exon

CP157_RS20530
type: Gene
subclass of: SO_0000704
RO_0002162: 59779
gene: mobQ
locus tag: CP157_RS20530
old locus tag: CP157_03970
so part of: sequence
location: complement(4337..5434)
location: region:4337-5434:-1
so has part: feature:4337-5434:-1:exon
subclass of: SO_0000010

position:4337:-1
position: 4337
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5434:-1
position: 5434
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4337-5434:-1:exon

CP157_RS20530
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59779
gene: mobQ
locus tag: CP157_RS20530
old locus tag: CP157_03970
inference: COORDINATES: protein motif:HMM:NF041496.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MobQ family relaxase
translation: MAIYHLRATMISRSAGRSATAAAAYRSAELIVDQRTGLAFDYRARGGVDHVETLAPADAPTWVQDRAALWNAVELAETRKNSQVAREVRVALPCELDATQRLQLVRDFCQREFVDRGMVADIALHAPGREGDERNHHAHILLTTRELGLEGFTTKNRDWNAKELLEGWREAWARDTNHALERCGAQERVDHRTLEAQRVEAQERALEARERGDEAEALRETVRAVSLDRQPLPQLSAGAWQLKERGIEVAAVQVWREIKEQAVEVARVAQELAEKARAWLERVTERAAEQVRSAVERVAPADAWGEFFAAAAPGASAAAEGLARDLEVERRLEAQREAAEREARERVQEQERRAHERDDGHDHGW
SIO_010081: CP157_RS20530
subclass of: SO_0000673
so part of: CP157_RS20530
location: complement(4337..5434)
location: region:4337-5434:-1
so has part: feature:4337-5434:-1:exon

WP_217847051.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4337-5434:-1:exon

CP157_RS19750
type: Gene
subclass of: SO_0000704
RO_0002162: 59779
locus tag: CP157_RS19750
old locus tag: CP157_03971
so part of: sequence
location: 5591..5842
location: region:5591-5842:1
so has part: feature:5591-5842:1:exon
subclass of: SO_0000010

position:5591:1
position: 5591
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5842:1
position: 5842
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5591-5842:1:exon

CP157_RS19750
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59779
locus tag: CP157_RS19750
old locus tag: CP157_03971
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009824546.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MPRTIDQQIAEAQAKLNRLKTRQKASDTRRKIIVGAIVTTEALKDPKIARWMAATLRKNATRDVDQKEIAGLLAELDAKAGTA
SIO_010081: CP157_RS19750
subclass of: SO_0000673
so part of: CP157_RS19750
location: 5591..5842
location: region:5591-5842:1
so has part: feature:5591-5842:1:exon

WP_217847052.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5591-5842:1:exon

CP157_RS19755
type: Gene
subclass of: SO_0000704
RO_0002162: 59779
locus tag: CP157_RS19755
old locus tag: CP157_03972
so part of: sequence
location: 5839..6384
location: region:5839-6384:1
so has part: feature:5839-6384:1:exon
subclass of: SO_0000010

position:5839:1
position: 5839
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6384:1
position: 6384
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5839-6384:1:exon

CP157_RS19755
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59779
locus tag: CP157_RS19755
old locus tag: CP157_03972
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSAAAKSPAELIADLTDQVRLLRQDVGNLTATATTKAEAARLRARIEKASEEAFAHAQEVIDASEHLGRRMHQDSASAAQVAAERAIKGLEHEISAAANHMRLESVRSSKEALHRFGGGLAVFGGIAALGAVLGILALLLIQGRGDAREFGKHPEVFCTSAGGEIATNSDGRRFCGIWIDR
SIO_010081: CP157_RS19755
subclass of: SO_0000673
so part of: CP157_RS19755
location: 5839..6384
location: region:5839-6384:1
so has part: feature:5839-6384:1:exon

WP_217847043.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5839-6384:1:exon

CP157_RS19760
type: Gene
subclass of: SO_0000704
RO_0002162: 59779
locus tag: CP157_RS19760
old locus tag: CP157_03973
so part of: sequence
location: 6558..6737
location: region:6558-6737:1
so has part: feature:6558-6737:1:exon
subclass of: SO_0000010

position:6558:1
position: 6558
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6737:1
position: 6737
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6558-6737:1:exon

CP157_RS19760
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59779
locus tag: CP157_RS19760
old locus tag: CP157_03973
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTLAKKGTKPVQLPKSSLVYKKHKQAEQAEQAEAERRKAEEIERMIEAKVNMALRRLLH
SIO_010081: CP157_RS19760
subclass of: SO_0000673
so part of: CP157_RS19760
location: 6558..6737
location: region:6558-6737:1
so has part: feature:6558-6737:1:exon

WP_217847044.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6558-6737:1:exon

CP157_RS19765
type: Gene
subclass of: SO_0000704
RO_0002162: 59779
locus tag: CP157_RS19765
so part of: sequence
location: 6813..7007
location: region:6813-7007:1
so has part: feature:6813-7007:1:exon
subclass of: SO_0000010

position:6813:1
position: 6813
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7007:1
position: 7007
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6813-7007:1:exon

CP157_RS19765
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59779
locus tag: CP157_RS19765
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAEVIVLRDIHSKMHVFECPPWRMVKMTSTFDGTSVDLSSGDGIATVRVSETPEDLSIQFTDET
SIO_010081: CP157_RS19765
subclass of: SO_0000673
so part of: CP157_RS19765
location: 6813..7007
location: region:6813-7007:1
so has part: feature:6813-7007:1:exon

WP_217847045.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6813-7007:1:exon

CP157_RS19770
type: Gene
subclass of: SO_0000704
RO_0002162: 59779
locus tag: CP157_RS19770
old locus tag: CP157_03974
so part of: sequence
location: 7256..7447
location: region:7256-7447:1
so has part: feature:7256-7447:1:exon
subclass of: SO_0000010

position:7256:1
position: 7256
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7447:1
position: 7447
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7256-7447:1:exon

CP157_RS19770
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59779
locus tag: CP157_RS19770
old locus tag: CP157_03974
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTQIPPRLVELVDWMNEALDRARKKREGREASLQAQSHYLPILPVTKIRQDELHTELVRLRKI
SIO_010081: CP157_RS19770
subclass of: SO_0000673
so part of: CP157_RS19770
location: 7256..7447
location: region:7256-7447:1
so has part: feature:7256-7447:1:exon

WP_217847046.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7256-7447:1:exon

CP157_RS19775
type: Gene
subclass of: SO_0000704
RO_0002162: 59779
locus tag: CP157_RS19775
old locus tag: CP157_03975
so part of: sequence
location: complement(7540..7854)
location: region:7540-7854:-1
so has part: feature:7540-7854:-1:exon
subclass of: SO_0000010

position:7540:-1
position: 7540
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7854:-1
position: 7854
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7540-7854:-1:exon

CP157_RS19775
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59779
locus tag: CP157_RS19775
old locus tag: CP157_03975
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011331338.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: H-NS histone family protein
translation: MPDLSFDTMSLDELKRLKKDLDKAIANYDDRRKAEARRDLEEKAREYGFSLSELADVKTTKRAALAPKYRNPSNPEQTWSGRGRQPTWFREAIQAGTEPDDLKI
SIO_010081: CP157_RS19775
subclass of: SO_0000673
so part of: CP157_RS19775
location: complement(7540..7854)
location: region:7540-7854:-1
so has part: feature:7540-7854:-1:exon

WP_127900035.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7540-7854:-1:exon

CP157_RS19780
type: Gene
subclass of: SO_0000704
RO_0002162: 59779
locus tag: CP157_RS19780
old locus tag: CP157_03976
so part of: sequence
location: 8125..8418
location: region:8125-8418:1
so has part: feature:8125-8418:1:exon
subclass of: SO_0000010

position:8125:1
position: 8125
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8418:1
position: 8418
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8125-8418:1:exon

CP157_RS19780
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59779
locus tag: CP157_RS19780
old locus tag: CP157_03976
inference: COORDINATES: protein motif:HMM:NF012442.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: HU family DNA-binding protein
translation: MVRSELLEKLVQAHPHLPRHVVELALEAILNEITARLAQGHRVELRRFGNFTCRVREARMGRNPRTGEPVFMETRQILHFRAGRHILDRLNRPTLPG
SIO_010081: CP157_RS19780
subclass of: SO_0000673
so part of: CP157_RS19780
location: 8125..8418
location: region:8125-8418:1
so has part: feature:8125-8418:1:exon

WP_045983912.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8125-8418:1:exon

CP157_RS19785
type: Gene
subclass of: SO_0000704
RO_0002162: 59779
locus tag: CP157_RS19785
old locus tag: CP157_03977
so part of: sequence
location: 8818..9066
location: region:8818-9066:1
so has part: feature:8818-9066:1:exon
subclass of: SO_0000010

position:8818:1
position: 8818
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9066:1
position: 9066
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8818-9066:1:exon

CP157_RS19785
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59779
locus tag: CP157_RS19785
old locus tag: CP157_03977
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002719915.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: BrnT family toxin
translation: MLMITWDAPKRQTNLAKHGLDFADLDEAFFLASVVVPAKAGRHMAIGRLADGTVAVVFAALGTQGVSVISMRPASARERSLL
SIO_010081: CP157_RS19785
subclass of: SO_0000673
so part of: CP157_RS19785
location: 8818..9066
location: region:8818-9066:1
so has part: feature:8818-9066:1:exon

WP_127900037.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8818-9066:1:exon

CP157_RS19790
type: Gene
subclass of: SO_0000704
RO_0002162: 59779
locus tag: CP157_RS19790
old locus tag: CP157_03978
so part of: sequence
location: 9063..9353
location: region:9063-9353:1
so has part: feature:9063-9353:1:exon
subclass of: SO_0000010

position:9063:1
position: 9063
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9353:1
position: 9353
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9063-9353:1:exon

CP157_RS19790
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59779
locus tag: CP157_RS19790
old locus tag: CP157_03978
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013419516.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: BrnA antitoxin family protein
translation: MSKTHLTEDQIQRMIASDPDAPEATAAQLVQARPFTEAFPALSDAMHRNMGGRPKVENPKVAVSLRLDQDVVARFKSSGPGWQTRMNRALREAAGL
SIO_010081: CP157_RS19790
subclass of: SO_0000673
so part of: CP157_RS19790
location: 9063..9353
location: region:9063-9353:1
so has part: feature:9063-9353:1:exon

WP_245008587.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9063-9353:1:exon

CP157_RS19795
type: Gene
subclass of: SO_0000704
RO_0002162: 59779
locus tag: CP157_RS19795
old locus tag: CP157_03979
so part of: sequence
location: complement(9792..10049)
location: region:9792-10049:-1
so has part: feature:9792-10049:-1:exon
subclass of: SO_0000010

position:9792:-1
position: 9792
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10049:-1
position: 10049
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9792-10049:-1:exon

CP157_RS19795
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59779
locus tag: CP157_RS19795
old locus tag: CP157_03979
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MDNYEGQLKAVTAAVSKKQLEVAFRHFFGLVPPEITSEAEYADATALYAAMDSSVPPQDLHSPVARYVVALGMQITKWEIKNIKC
SIO_010081: CP157_RS19795
subclass of: SO_0000673
so part of: CP157_RS19795
location: complement(9792..10049)
location: region:9792-10049:-1
so has part: feature:9792-10049:-1:exon

WP_217847047.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9792-10049:-1:exon

CP157_RS19800
type: Gene
subclass of: SO_0000704
RO_0002162: 59779
locus tag: CP157_RS19800
so part of: sequence
location: 10333..10626
location: region:10333-10626:1
so has part: feature:10333-10626:1:exon
subclass of: SO_0000010

position:10333:1
position: 10333
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10626:1
position: 10626
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10333-10626:1:exon

CP157_RS19800
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59779
locus tag: CP157_RS19800
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002724542.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: HU family DNA-binding protein
translation: MLRSQLIERLVETHPHLPRSVVEAALNAILNEITDSLAKGSRIEIRGFGSFFGRARQARTGRDPRTGEAVLVFAKRVPRFRASNLLLDRLNRPTTPG
SIO_010081: CP157_RS19800
subclass of: SO_0000673
so part of: CP157_RS19800
location: 10333..10626
location: region:10333-10626:1
so has part: feature:10333-10626:1:exon

WP_217847048.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10333-10626:1:exon