Paracoccus marcusii strain CP157 plasmid pCP157_08, complete sequence.
type: Entry
definition: Paracoccus marcusii strain CP157 plasmid pCP157_08, complete sequence.
sequence version: NZ_CP065900.1
sequence date: 2023-03-25
sequence: sequence
division: CON
label: NZ_CP065900.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN16776174
keyword: RefSeq
source: Paracoccus marcusii
organism: Paracoccus marcusii
taxonomy: Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodobacterales; Paracoccaceae; Paracoccus.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP065900.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\nThis genome has a base modification file available.\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP SMRTPortal v. 2.3.0\nGenome Coverage :: 65x\nSequencing Technology :: PacBio; Illumina MiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/25/2023 06:10:02\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,059\nCDSs (total) :: 3,997\nGenes (coding) :: 3,913\nCDSs (with protein) :: 3,913\nGenes (RNA) :: 62\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 50\nncRNAs :: 3\nPseudo Genes (total) :: 84\nCDSs (without protein) :: 84\nPseudo Genes (ambiguous residues) :: 0 of 84\nPseudo Genes (frameshifted) :: 47 of 84\nPseudo Genes (incomplete) :: 43 of 84\nPseudo Genes (internal stop) :: 20 of 84\nPseudo Genes (multiple problems) :: 23 of 84\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 15269
topology: circular
so has quality: SO_0000988
location: 1..15269
location: region:1-15269:1
RO_0002162: 59779

NZ_CP065900
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN16776174
type: BioSample
SIO_000068: biosample

1
title: High Potential for Secondary Metabolite Production of Paracoccus marcusii CP157, Isolated From the Crustacean Cancer pagurus
author: Leinberger, J.
author: Holste, J.
author: Bunk, B.
author: Freese, H.M.
author: Sproeer, C.
author: Dlugosch, L.
author: Kueck, A.-C.
author: Schulz, S.
author: Brinkhoff, T.
journal: Front Microbiol 12 (2021)

2
title: Direct Submission
author: Leinberger, J.
author: Brinkhoff, T.
author: Bunk, B.
author: Freese, H.M.
journal: Submitted (10-DEC-2020) Institute for Chemistry and Biology of the Marine Environment, University of Oldenburg, Carl-von-Ossietzky Strasse 9-11, Oldenburg 26129, Germany

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15269:1
position: 15269
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-15269:1:source
so part of: sequence
organism: Paracoccus marcusii
mol type: genomic DNA
strain: CP157
isolation source: carapace
host: Cancer pagurus
plasmid: pCP157_08
country: Germany: Helgoland
lat lon: 54.12 N 7.53 E
collection date: 2014-10-15

59779
type: Taxonomy
SIO_000068: taxonomy

CP157_RS19555
type: Gene
subclass of: SO_0000704
RO_0002162: 59779
locus tag: CP157_RS19555
old locus tag: CP157_03936
so part of: sequence
location: 1..810
location: region:1-810:1
so has part: feature:1-810:1:exon
subclass of: SO_0000010

position:810:1
position: 810
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-810:1:exon

CP157_RS19555
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59779
locus tag: CP157_RS19555
old locus tag: CP157_03936
inference: COORDINATES: protein motif:HMM:NF013235.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiation protein
translation: MRDELRPKSHDSSAGTLGAFQRRGEVIKPAELIEVRGGEKITLAARRIYNQLLSNAFGPEMAAEGQEYRISFSELRGNHTSNDRVTEAILSLMQTVVRVRMSDGSTRNVHLLGPTDVEKFGPGIATMLTYELHPKLLPILRDSQIFARLEMQILHGFGTKYGMALYEIIAKRIGLKHVFYNDFETDELRDYLGVPHGKLGPFAALRRKAIEPAVAEVNALAPFSCHVETIETQGRKVTKLRLSWWPKTVEEKKAQWEAQQGKQANLFVD
SIO_010081: CP157_RS19555
subclass of: SO_0000673
so part of: CP157_RS19555
location: 1..810
location: region:1-810:1
so has part: feature:1-810:1:exon

WP_217847030.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1-810:1:exon

CP157_RS19560
type: Gene
subclass of: SO_0000704
RO_0002162: 59779
locus tag: CP157_RS19560
old locus tag: CP157_03937
so part of: sequence
location: 899..1525
location: region:899-1525:1
so has part: feature:899-1525:1:exon
subclass of: SO_0000010

position:899:1
position: 899
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1525:1
position: 1525
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:899-1525:1:exon

CP157_RS19560
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59779
locus tag: CP157_RS19560
old locus tag: CP157_03937
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008878357.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family protein
translation: MQVITIAMQKGGVGKSTLARSLAVAAARDGLSVLIIDMDSQQSVSQWAERREGDMPVVVFSTENELPKKLAQAKGVADLVIIDTPPARSTEAPAAVEVADLVLIPTTPDIEPLEQMPRTLRLCRGFSRRVFAVVNMANPTGPAEVAYTREVIEAMGAKTAPVVLHRRKAHRDASASGQTVQEIDPNGKAAAELESLWEWVRAELQGSK
SIO_010081: CP157_RS19560
subclass of: SO_0000673
so part of: CP157_RS19560
location: 899..1525
location: region:899-1525:1
so has part: feature:899-1525:1:exon

WP_217847031.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:899-1525:1:exon

CP157_RS19565
type: Gene
subclass of: SO_0000704
RO_0002162: 59779
locus tag: CP157_RS19565
old locus tag: CP157_03938
so part of: sequence
location: 1596..1898
location: region:1596-1898:1
so has part: feature:1596-1898:1:exon
subclass of: SO_0000010

position:1596:1
position: 1596
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1898:1
position: 1898
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1596-1898:1:exon

CP157_RS19565
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59779
locus tag: CP157_RS19565
old locus tag: CP157_03938
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008878356.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKKPNPLLAAMMSKEPEPETAAAPVAPKPAAKRAPEPVAEKPAAKRAGQKHLGAYFDKRDPILERVAILRARLDMNNSELIEHALHELWKRHEAGRAFGE
SIO_010081: CP157_RS19565
subclass of: SO_0000673
so part of: CP157_RS19565
location: 1596..1898
location: region:1596-1898:1
so has part: feature:1596-1898:1:exon

WP_217847032.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1596-1898:1:exon

CP157_RS19570
type: Gene
subclass of: SO_0000704
RO_0002162: 59779
locus tag: CP157_RS19570
old locus tag: CP157_03939
so part of: sequence
location: 2210..2884
location: region:2210-2884:1
so has part: feature:2210-2884:1:exon
subclass of: SO_0000010

position:2210:1
position: 2210
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2884:1
position: 2884
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2210-2884:1:exon

CP157_RS19570
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59779
locus tag: CP157_RS19570
old locus tag: CP157_03939
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MATIFLTGAALSARIRKVMKGNKPRMCVAFLGPEWVTELFDGSTPSELRVICDLKMGMTPKSALIAGGAPDNKALRYLQDTEMHAKVYLSEGGAVVCSANASSRALSATNRIEDGLWIGPETDAYAQVAEQFEARYQDGTVVDQTALEVAPLSVFAPGDKQELPAGLTLDEALRRNPQAFHGIRFICTDTNVSKHIQDEANTLIDREQRAEGGLADTTPRVRMH
SIO_010081: CP157_RS19570
subclass of: SO_0000673
so part of: CP157_RS19570
location: 2210..2884
location: region:2210-2884:1
so has part: feature:2210-2884:1:exon

WP_217847033.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2210-2884:1:exon

CP157_RS19575
type: Gene
subclass of: SO_0000704
RO_0002162: 59779
locus tag: CP157_RS19575
so part of: sequence
location: 2931..3688
location: region:2931-3688:1
so has part: feature:2931-3688:1:exon
subclass of: SO_0000010

position:2931:1
position: 2931
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3688:1
position: 3688
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2931-3688:1:exon

CP157_RS19575
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59779
locus tag: CP157_RS19575
inference: COORDINATES: similar to AA sequence:RefSeq:WP_076611905.1
ribosomal slippage: true
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS5 family transposase
translation: MSDLFWLTDAQMARLAPFFPKSHGKPRVDDRRVLSGIIFIIRNGLRWRDAPAAYGPHKTLYSRWRRWSGKGIFARMMAGLAAEHGEENTVMIDATYLKAHRTATSMAGQKGGRGRLIGRTKGGMNTKLHAICDSQGRPLDLFITAGQVSDYIGARALLSGLPNVRWLLGDRGYDADWLREALQDKGIRACIPGRKQRKMPVKYDKRRYKRRNRIEIMFGRIKDWRRVATRYDRCPKVFLSAIALAALVIYWL
SIO_010081: CP157_RS19575
subclass of: SO_0000673
so part of: CP157_RS19575
location: join(2931..3252,3252..3688)
location: region:2931-3688:1
so has part: feature:2931-3252:1:exon
so has part: feature:3252-3688:1:exon

WP_217847034.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2931-3252:1:exon

position:3252:1
position: 3252
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3252-3688:1:exon

CP157_RS19580
type: Gene
subclass of: SO_0000704
RO_0002162: 59779
locus tag: CP157_RS19580
old locus tag: CP157_03942
so part of: sequence
location: 4258..4845
location: region:4258-4845:1
so has part: feature:4258-4845:1:exon
subclass of: SO_0000010

position:4258:1
position: 4258
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4845:1
position: 4845
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4258-4845:1:exon

CP157_RS19580
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59779
locus tag: CP157_RS19580
old locus tag: CP157_03942
inference: COORDINATES: protein motif:HMM:NF012798.2
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: tyrosine-type recombinase/integrase
translation: MGKKPPLTPDQVALIRLILRQEKDLRGLALFNTALDTSFRGSDLVRLRVSDVATPAGVREIVEIRQKKTENRHARPVQARLSVGTRDSLRAYLAASEQPLHGWLFTGQGARWSHTHLSESQLWRLFRSWLDKARIDPSLYGLHSLRRTFPTHIYQQTGNLRAAQLLLGHASIESTKEYIGTEQAEALEIAKKYHL
SIO_010081: CP157_RS19580
subclass of: SO_0000673
so part of: CP157_RS19580
location: 4258..4845
location: region:4258-4845:1
so has part: feature:4258-4845:1:exon

WP_217847035.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4258-4845:1:exon

CP157_RS19585
type: Gene
subclass of: SO_0000704
RO_0002162: 59779
locus tag: CP157_RS19585
old locus tag: CP157_03943
so part of: sequence
location: 4981..5967
location: region:4981-5967:1
so has part: feature:4981-5967:1:exon
subclass of: SO_0000010

position:4981:1
position: 4981
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5967:1
position: 5967
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4981-5967:1:exon

CP157_RS19585
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59779
locus tag: CP157_RS19585
old locus tag: CP157_03943
EC number: 2.4.-.-
inference: COORDINATES: protein motif:HMM:NF021616.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: glycosyltransferase family A protein
translation: MFKDSEKFLSIIIPFYNSALTVGSLIKLINSNFFFNTEIIVIDDASTDGSKEVIERELQKIDNTIFLKNETNMGAGISRNRGLEAATGKYILFFDADDMLHADAIKNAIHLMDRDSNIDVAVFQYKYMADVSDVFSGMSYIDEQIFSAILDGKRKRIVTINSHPELTRISNYPWNKVIRSSRYKDNLLFGSTKVHNDIYANWQILTKARKILVSDDVICTHILNSHGSNLTNLQSKERLELFIALTDTYEMLEASPHIRKICAIYFWDLATSLASWSRSRIEDEFESDFNLAYDKLIGKINLEDILVLRKCGYSAVLNNMTDRTLCLG
SIO_010081: CP157_RS19585
subclass of: SO_0000673
so part of: CP157_RS19585
location: 4981..5967
location: region:4981-5967:1
so has part: feature:4981-5967:1:exon

WP_217847036.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4981-5967:1:exon

CP157_RS19590
type: Gene
subclass of: SO_0000704
RO_0002162: 59779
locus tag: CP157_RS19590
so part of: sequence
location: 5960..6199
location: region:5960-6199:1
so has part: feature:5960-6199:1:exon
subclass of: SO_0000010

position:5960:1
position: 5960
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6199:1
position: 6199
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5960-6199:1:exon

CP157_RS19590
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59779
locus tag: CP157_RS19590
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAKNTNIERIAHHLKKGGFLKTVRLIIFHTKRKVFAGNGKLPSQRRKVKNEDILLSLCVLQKEIREIKLKLEQLEREKH
SIO_010081: CP157_RS19590
subclass of: SO_0000673
so part of: CP157_RS19590
location: 5960..6199
location: region:5960-6199:1
so has part: feature:5960-6199:1:exon

WP_217847037.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5960-6199:1:exon

CP157_RS19595
type: Gene
subclass of: SO_0000704
RO_0002162: 59779
locus tag: CP157_RS19595
old locus tag: CP157_03944
so part of: sequence
location: complement(6221..7393)
location: region:6221-7393:-1
so has part: feature:6221-7393:-1:exon
subclass of: SO_0000010

position:6221:-1
position: 6221
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7393:-1
position: 7393
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6221-7393:-1:exon

CP157_RS19595
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59779
locus tag: CP157_RS19595
old locus tag: CP157_03944
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010138045.1
GO function: GO:0051287 - NAD binding [Evidence IEA]; GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]; GO:0003979 - UDP-glucose 6-dehydrogenase activity [Evidence IEA]
GO process: GO:0000271 - polysaccharide biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: nucleotide sugar dehydrogenase
translation: MGKIIAVAGIGYVGLSNAVLLAARNTVRALDVDAGRVAMLNDRRCPIIDEDIAHHLATQDLDLTATTDPAAAYAGADFVIVATPTDYDPVTNYFNTSSVEDVIRDVTRLAPQAVIVVKSTVPVGFTRDVRARLGTEQVIFSPEFLREGRALHDNLHPSRIVVGEDSARGRAFADLLAEAALDDDVPVLLTGSTEAEAIKLFANTYLALRVAYFNELDSYALSLGLDSRQIIQGVGLDPRIGAHYNNPSFGYGGYCLPKDSKQLLANYNDVPQNLIAAVVEANRTRKDVIADAILARRPQVVGIHRLVMKAGSDNFRQSAVQGVMKRLKAKGLEVVVFEPALPDAQFFGSEVIRDLAAFKARADLIVANRLTDDLADVKARVYTRDIYSTD
SIO_010081: CP157_RS19595
subclass of: SO_0000673
so part of: CP157_RS19595
location: complement(6221..7393)
location: region:6221-7393:-1
so has part: feature:6221-7393:-1:exon

WP_245008586.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6221-7393:-1:exon

CP157_RS19600
type: Gene
subclass of: SO_0000704
RO_0002162: 59779
locus tag: CP157_RS19600
old locus tag: CP157_03945
so part of: sequence
location: 7662..8534
location: region:7662-8534:1
so has part: feature:7662-8534:1:exon
subclass of: SO_0000010

position:7662:1
position: 7662
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8534:1
position: 8534
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7662-8534:1:exon

CP157_RS19600
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59779
locus tag: CP157_RS19600
old locus tag: CP157_03945
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MGTLNIISGMDRSGTSLCAAISQFVGVHLGNNLIGPRDANPKGYFEDRRGVSINEQLLRHNNYGRKLASPLPNGWETGIPAKLAEIRIRKVLNDLSRNNSLFGIKDPRLCITSKLWDAGAKSLNHDVRYTMCIRNPIEVSASLNKRDGTDKASACLMWMAHTMTFLRSSHGSERLWVDYAKLMADPLETAASIKFFVQGIEKLTNEEMENISGFVDVRLWRNRSESTANNYIEEAALQLYECIKSKDQELLTKFLDNGPGLLIEKLSHHAALSLSKWVPPYHDIVIGEDS
SIO_010081: CP157_RS19600
subclass of: SO_0000673
so part of: CP157_RS19600
location: 7662..8534
location: region:7662-8534:1
so has part: feature:7662-8534:1:exon

WP_217847023.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7662-8534:1:exon

CP157_RS19605
type: Gene
subclass of: SO_0000704
RO_0002162: 59779
locus tag: CP157_RS19605
old locus tag: CP157_03946
so part of: sequence
location: 8531..9454
location: region:8531-9454:1
so has part: feature:8531-9454:1:exon
subclass of: SO_0000010

position:8531:1
position: 8531
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9454:1
position: 9454
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8531-9454:1:exon

CP157_RS19605
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59779
locus tag: CP157_RS19605
old locus tag: CP157_03946
EC number: 2.4.-.-
inference: COORDINATES: protein motif:HMM:NF012745.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: glycosyltransferase family 2 protein
translation: MKKPTLDVLVPHYQDPNGLHLSLLSIIDQEWKGRLRVIVADDGSDRENFDQLQSHCQDFQRLSKHQALILRRDKNKGRPYTRNELLDAADASHIAWLDAGDTWERTKLQCQFDYLSQMHYGGRNLQETWITCDYTWIEGNLDSRRVVQDISGDQFKNLMSGERLRAYLWTLLGTRESFTRVGYFDERLTRLQDLDYFVRFVRGGGKILKPRTNVGLATYYKNDIGRNANEVYAAYSTIIRKNTPQIIQYPRTFSKDLNYKAAKLAARFSMNNGDRSLRIKYELLGLTVKPVTTSKQIVRKIIDRLTS
SIO_010081: CP157_RS19605
subclass of: SO_0000673
so part of: CP157_RS19605
location: 8531..9454
location: region:8531-9454:1
so has part: feature:8531-9454:1:exon

WP_217847024.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8531-9454:1:exon

CP157_RS19610
type: Gene
subclass of: SO_0000704
RO_0002162: 59779
locus tag: CP157_RS19610
old locus tag: CP157_03947
so part of: sequence
location: 9451..10182
location: region:9451-10182:1
so has part: feature:9451-10182:1:exon
subclass of: SO_0000010

position:9451:1
position: 9451
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10182:1
position: 10182
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9451-10182:1:exon

CP157_RS19610
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59779
locus tag: CP157_RS19610
old locus tag: CP157_03947
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTSEPDTLIVHVAVISGNTFNGKPIPPELIAESINSKTKTFYLPWKDSSDQHNLQIVSDPNEAASIGRELAVASGWDDEALIVIYLSDRHTHGIPTPSAASKCLSQISAYAKSYGVRIVYKITSIDLGADVHRTTEALAFIETISQDNNIVYHGPISRSQQLVSFIQRNKLLCNLCNKVAAALADVDIEPVRETSCADLVNSYIEGLRDNGFVLSPKDENSLNTLALRISLTANERYAGNIND
SIO_010081: CP157_RS19610
subclass of: SO_0000673
so part of: CP157_RS19610
location: 9451..10182
location: region:9451-10182:1
so has part: feature:9451-10182:1:exon

WP_217847025.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9451-10182:1:exon

CP157_RS19615
type: Gene
subclass of: SO_0000704
RO_0002162: 59779
locus tag: CP157_RS19615
old locus tag: CP157_03948
so part of: sequence
location: 10175..11359
location: region:10175-11359:1
so has part: feature:10175-11359:1:exon
subclass of: SO_0000010

position:10175:1
position: 10175
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11359:1
position: 11359
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10175-11359:1:exon

CP157_RS19615
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59779
locus tag: CP157_RS19615
old locus tag: CP157_03948
EC number: 2.4.-.-
inference: COORDINATES: protein motif:HMM:NF024831.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: glycosyltransferase
translation: MTRKKRISFVIEKLAQRGGGAERVLIDVANALVRRGYEVEIITHEYRGKAPAYPLEPGLIVNNLRPHQRSKFKKSIQPIRKALNTAHSFPGLARLSWLNRHGSFWRRLGRHLEANRPDVAIAFMPPAIKALAYAEVSYNLLKIASTHNAPSQDYENALRWDPSRIDQQRRLSCLSKIDKVCVLLPEYASYYSFDPEKIIVLPNAVTPADRIVPTSARRKVISVSGRLEHVKRHDLAILAWKAVQDKFPNWSLEIFGEGSLRKELELLVAKNNVGRVRFMGHRADAVERVGTSSVLLHPASYEGFPLSVCEALAAGTPVVGFEDCSGLNHLVTNNINGLLSGTNDRVHDLATCLHKIISDSSLRDRLSAACPSSVEIYSPDTVIRQWEDIINLSK
SIO_010081: CP157_RS19615
subclass of: SO_0000673
so part of: CP157_RS19615
location: 10175..11359
location: region:10175-11359:1
so has part: feature:10175-11359:1:exon

WP_217847026.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10175-11359:1:exon

CP157_RS19620
type: Gene
subclass of: SO_0000704
RO_0002162: 59779
locus tag: CP157_RS19620
pseudo: true
so part of: sequence
location: <11552..>11794
location: region:11552-11794:1
so has part: feature:11552-11794:1:exon
subclass of: SO_0000010

position:11552:1
position: 11552
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:11794:1
position: 11794
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11552-11794:1:exon

CP157_RS19620
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59779
locus tag: CP157_RS19620
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007791754.1
note: internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: transposase
SIO_010081: CP157_RS19620
subclass of: SO_0000673
so part of: CP157_RS19620
location: <11552..>11794
location: region:11552-11794:1
so has part: feature:11552-11794:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:11552-11794:1:exon

CP157_RS19625
type: Gene
subclass of: SO_0000704
RO_0002162: 59779
locus tag: CP157_RS19625
old locus tag: CP157_03949
pseudo: true
so part of: sequence
location: complement(<11793..11936)
location: region:11793-11936:-1
so has part: feature:11793-11936:-1:exon
subclass of: SO_0000010

position:11793:-1
position: 11793
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:11936:-1
position: 11936
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11793-11936:-1:exon

CP157_RS19625
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59779
locus tag: CP157_RS19625
old locus tag: CP157_03949
inference: COORDINATES: similar to AA sequence:RefSeq:WP_076611723.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO process: GO:0006313 - transposition, DNA-mediated [Evidence IEA]
note: frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: transposase
SIO_010081: CP157_RS19625
subclass of: SO_0000673
so part of: CP157_RS19625
location: complement(<11793..11936)
location: region:11793-11936:-1
so has part: feature:11793-11936:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:11793-11936:-1:exon

CP157_RS19630
type: Gene
subclass of: SO_0000704
RO_0002162: 59779
gene: mobQ
locus tag: CP157_RS19630
old locus tag: CP157_03950
so part of: sequence
location: complement(12076..13137)
location: region:12076-13137:-1
so has part: feature:12076-13137:-1:exon
subclass of: SO_0000010

position:12076:-1
position: 12076
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13137:-1
position: 13137
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12076-13137:-1:exon

CP157_RS19630
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59779
gene: mobQ
locus tag: CP157_RS19630
old locus tag: CP157_03950
inference: COORDINATES: protein motif:HMM:NF041496.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MobQ family relaxase
translation: MAIYHLRATMISRSAGRSATAAAAYRSAELIVDQRTGLAFDYRARGGVDHVETLAPADAPSWVQDRAALWNAVELAETRKNSQVAREIRVALPCELDAAQRLQLVRDFCQREFVDRGMVADIALHAPGREGDERNHHAHILLTTREIGPEGFTTKNRDWNAKELLEGWREAWARDTNHALERCGTHERVDHRTLEAQRVEAQERAREARERGDEAEALRETVRAVSLDRQPLPQLSAGAWQLKERGIEVAAVQVWREIKEQAVEVARVAQELAEKARTWLERVTERAAEQVRDVVERVTPADASAAAEGLARDLEVERRQEAQREAAEREARKRVQEQERRAHERDRGDDHGW
SIO_010081: CP157_RS19630
subclass of: SO_0000673
so part of: CP157_RS19630
location: complement(12076..13137)
location: region:12076-13137:-1
so has part: feature:12076-13137:-1:exon

WP_217847027.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12076-13137:-1:exon

CP157_RS19635
type: Gene
subclass of: SO_0000704
RO_0002162: 59779
locus tag: CP157_RS19635
old locus tag: CP157_03951
so part of: sequence
location: 13187..13465
location: region:13187-13465:1
so has part: feature:13187-13465:1:exon
subclass of: SO_0000010

position:13187:1
position: 13187
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13465:1
position: 13465
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13187-13465:1:exon

CP157_RS19635
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59779
locus tag: CP157_RS19635
old locus tag: CP157_03951
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009824546.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MPTQTRSVCISGHIDQQIAEAQAKLNRLKTRQKASDTRRKIIVGAIVTTEALKDPKIARWMAATLRKNATREVDQKEIAGLLAELDAKAGTA
SIO_010081: CP157_RS19635
subclass of: SO_0000673
so part of: CP157_RS19635
location: 13187..13465
location: region:13187-13465:1
so has part: feature:13187-13465:1:exon

WP_245008585.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13187-13465:1:exon

CP157_RS19640
type: Gene
subclass of: SO_0000704
RO_0002162: 59779
locus tag: CP157_RS19640
old locus tag: CP157_03952
so part of: sequence
location: 13462..14022
location: region:13462-14022:1
so has part: feature:13462-14022:1:exon
subclass of: SO_0000010

position:13462:1
position: 13462
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14022:1
position: 14022
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13462-14022:1:exon

CP157_RS19640
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59779
locus tag: CP157_RS19640
old locus tag: CP157_03952
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSAAAKSPAELIADLTDQVRLLRQNVGNLTATATTKAEAARLMARIEKASGEAFAHAQEVIDASEHLGRRMHQDSASAAQVAAQKAIKSLEHEISAAANHMRLESVRSSKEALHRFGGGLAVFGGIAALGGVLGIVALLLIQGRGDAREFGKHPEVFCTSAGGEIATNSDGRRFCGIWIDRNPRGD
SIO_010081: CP157_RS19640
subclass of: SO_0000673
so part of: CP157_RS19640
location: 13462..14022
location: region:13462-14022:1
so has part: feature:13462-14022:1:exon

WP_217847028.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13462-14022:1:exon