Taeniopygia guttata isolate Blue55 chromosome 35, bTaeGut1.4.pri, whole genome shotgun sequence.
type: Entry
definition: Taeniopygia guttata isolate Blue55 chromosome 35, bTaeGut1.4.pri, whole genome shotgun sequence.
sequence version: NC_054767.1
sequence date: 2021-05-26
sequence: sequence
division: CON
label: NC_054767.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA558048
dblink: SAMN02981239
keyword: WGS
keyword: RefSeq
source: Taeniopygia guttata (zebra finch)
organism: Taeniopygia guttata
taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Passeroidea; Estrildidae; Estrildinae; Taeniopygia.
reference: 1
references: 33911273
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCM025864.2.\nAssembly name: bTaeGut1.4.pri\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Vertebrate Genomes Project on\n2021/05/04. The original whole-genome shotgun project has the\naccession RRCB00000000.2.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Vertebrate Genomes Project\nAssembly Date :: 09-APR-2021\nAssembly Method :: FALCON v. 5.1.1; FALCON unzip v.\n Nov2017(uc4); Purge_dups v. 1.0.1;\n Scaff10X v. 4.1.0; Bionano Solve\n BspQI/BssSI v. 3.4; Salsa2 v. 2.2.; Arrow\n polishing v. variantCaller 2.3.3; Merfin\n filtering v. 0.1; longranger align v.\n 2.2.2; freebayes polishing v. 1.3.1;\n gEVAL manual curation v. 2021-04-09; VGP\n pipeline v. 1.7\nAssembly Name :: bTaeGut1.4.pri\nDiploid :: Principal Pseudohaplotype\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 88.2x\nSequencing Technology :: PacBio RSII; 10X Genomics linked reads;\n Bionano Genomics two enzymes; Arima\n Genomics Hi-C\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Status :: Full annotation\nAnnotation Name :: Taeniopygia guttata Annotation\n Release 106\nAnnotation Version :: 106\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 8.6\nAnnotation Method :: Best-placed RefSeq; Gnomon\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\n##Genome-Annotation-Data-END##

sequence
subclass of: SO_0000340
sequence length: 2564177
topology: linear
so has quality: SO_0000987
location: 1..2564177
location: region:1-2564177:1
RO_0002162: 59729

NC_054767
type: RefSeq
SIO_000068: refseq

PRJNA558048
type: BioProject
SIO_000068: bioproject

SAMN02981239
type: BioSample
SIO_000068: biosample

1
title: Towards complete and error-free genome assemblies of all vertebrate species
author: Rhie, A.
author: McCarthy, S.A.
author: Fedrigo, O.
author: Damas, J.
author: Formenti, G.
author: Koren, S.
author: Uliano-Silva, M.
author: Chow, W.
author: Fungtammasan, A.
author: Kim, J.
author: Lee, C.
author: Ko, B.J.
author: Chaisson, M.
author: Gedman, G.L.
author: Cantin, L.J.
author: Thibaud-Nissen, F.
author: Haggerty, L.
author: Bista, I.
author: Smith, M.
author: Haase, B.
author: Mountcastle, J.
author: Winkler, S.
author: Paez, S.
author: Howard, J.
author: Vernes, S.C.
author: Lama, T.M.
author: Grutzner, F.
author: Warren, W.C.
author: Balakrishnan, C.N.
author: Burt, D.
author: George, J.M.
author: Biegler, M.T.
author: Iorns, D.
author: Digby, A.
author: Eason, D.
author: Robertson, B.
author: Edwards, T.
author: Wilkinson, M.
author: Turner, G.
author: Meyer, A.
author: Kautt, A.F.
author: Franchini, P.
author: Detrich, H.W. 3rd
author: Svardal, H.
author: Wagner, M.
author: Naylor, G.J.P.
author: Pippel, M.
author: Malinsky, M.
author: Mooney, M.
author: Simbirsky, M.
author: Hannigan, B.T.
author: Pesout, T.
author: Houck, M.
author: Misuraca, A.
author: Kingan, S.B.
author: Hall, R.
author: Kronenberg, Z.
author: Sovic, I.
author: Dunn, C.
author: Ning, Z.
author: Hastie, A.
author: Lee, J.
author: Selvaraj, S.
author: Green, R.E.
author: Putnam, N.H.
author: Gut, I.
author: Ghurye, J.
author: Garrison, E.
author: Sims, Y.
author: Collins, J.
author: Pelan, S.
author: Torrance, J.
author: Tracey, A.
author: Wood, J.
author: Dagnew, R.E.
author: Guan, D.
author: London, S.E.
author: Clayton, D.F.

33911273
type: PubMed
SIO_000068: pubmed

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2564177:1
position: 2564177
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-2564177:1:source
so part of: sequence
organism: Taeniopygia guttata
mol type: genomic DNA
isolate: Blue55
chromosome: 35
sex: female
tissue type: Muscle, blood, brain
dev stage: adult
country: USA
lat lon: 36.0014 N 78.9382 W
collected by: Matt Biegler, Duke University and Rockefeller University

59729
type: Taxonomy
SIO_000068: taxonomy

STK19
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: STK19
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(6407..16571)
location: region:6407-16571:-1
so has part: feature:6407-16571:-1:exon
subclass of: SO_0000010

121468751
type: Gene
SIO_000068: ncbigene

position:6407:-1
position: 6407
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16571:-1
position: 16571
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6407-16571:-1:exon

STK19
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: STK19
product: serine/threonine kinase 19, transcript variant X7
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 19 samples with support for all annotated introns
transcript id: XM_041712809.1
SIO_010081: STK19
subclass of: SO_0000673
so part of: STK19
location: complement(join(6407..6641,8288..8385,10743..10840,12474..12569,14171..14316,16148..16565))
location: region:6407-16565:-1
so has part: feature:16148-16565:-1:exon
so has part: feature:14171-14316:-1:exon
so has part: feature:12474-12569:-1:exon
so has part: feature:10743-10840:-1:exon
so has part: feature:8288-8385:-1:exon
so has part: feature:6407-6641:-1:exon

position:16565:-1
position: 16565
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16148-16565:-1:exon

position:16148:-1
position: 16148
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:14171-14316:-1:exon

position:14171:-1
position: 14171
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14316:-1
position: 14316
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:12474-12569:-1:exon

position:12474:-1
position: 12474
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12569:-1
position: 12569
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:10743-10840:-1:exon

position:10743:-1
position: 10743
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10840:-1
position: 10840
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:8288-8385:-1:exon

position:8288:-1
position: 8288
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8385:-1
position: 8385
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:6407-6641:-1:exon

position:6641:-1
position: 6641
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

STK19
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: STK19
product: serine/threonine kinase 19, transcript variant X5
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
transcript id: XM_041712807.1
SIO_010081: STK19
subclass of: SO_0000673
so part of: STK19
location: complement(join(6407..6641,7565..7712,8288..8385,10743..10840,14171..14316,16148..16556))
location: region:6407-16556:-1
so has part: feature:16148-16556:-1:exon
so has part: feature:14171-14316:-1:exon
so has part: feature:10743-10840:-1:exon
so has part: feature:8288-8385:-1:exon
so has part: feature:7565-7712:-1:exon
so has part: feature:6407-6641:-1:exon

position:16556:-1
position: 16556
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16148-16556:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:14171-14316:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:10743-10840:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:8288-8385:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:7565-7712:-1:exon

position:7565:-1
position: 7565
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7712:-1
position: 7712
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:6407-6641:-1:exon

STK19
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: STK19
product: serine/threonine kinase 19, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
transcript id: XM_041712806.1
SIO_010081: STK19
subclass of: SO_0000673
so part of: STK19
location: complement(join(6407..6641,7565..7712,10704..10840,12474..12569,14171..14316,16148..16555))
location: region:6407-16555:-1
so has part: feature:16148-16555:-1:exon
so has part: feature:14171-14316:-1:exon
so has part: feature:12474-12569:-1:exon
so has part: feature:10704-10840:-1:exon
so has part: feature:7565-7712:-1:exon
so has part: feature:6407-6641:-1:exon

position:16555:-1
position: 16555
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16148-16555:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:14171-14316:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:12474-12569:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:10704-10840:-1:exon

position:10704:-1
position: 10704
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:7565-7712:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:6407-6641:-1:exon

STK19
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: STK19
product: serine/threonine kinase 19, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
transcript id: XM_041712805.1
SIO_010081: STK19
subclass of: SO_0000673
so part of: STK19
location: complement(join(6407..6641,7565..7712,8288..8385,10704..10840,14171..14316,16148..16554))
location: region:6407-16554:-1
so has part: feature:16148-16554:-1:exon
so has part: feature:14171-14316:-1:exon
so has part: feature:10704-10840:-1:exon
so has part: feature:8288-8385:-1:exon
so has part: feature:7565-7712:-1:exon
so has part: feature:6407-6641:-1:exon

position:16554:-1
position: 16554
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16148-16554:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:14171-14316:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:10704-10840:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:8288-8385:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:7565-7712:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:6407-6641:-1:exon

STK19
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: STK19
product: serine/threonine kinase 19, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 29 samples with support for all annotated introns
transcript id: XM_041712804.1
SIO_010081: STK19
subclass of: SO_0000673
so part of: STK19
location: complement(join(6407..6641,7565..7712,8288..8385,10743..10840,12474..12569,14171..14316,16148..16553))
location: region:6407-16553:-1
so has part: feature:16148-16553:-1:exon
so has part: feature:14171-14316:-1:exon
so has part: feature:12474-12569:-1:exon
so has part: feature:10743-10840:-1:exon
so has part: feature:8288-8385:-1:exon
so has part: feature:7565-7712:-1:exon
so has part: feature:6407-6641:-1:exon

position:16553:-1
position: 16553
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16148-16553:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:14171-14316:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:12474-12569:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:10743-10840:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:8288-8385:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:7565-7712:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:6407-6641:-1:exon

STK19
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: STK19
product: serine/threonine kinase 19, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 23 samples with support for all annotated introns
transcript id: XM_041712803.1
SIO_010081: STK19
subclass of: SO_0000673
so part of: STK19
location: complement(join(6407..6641,7565..7712,8288..8385,10704..10840,12474..12569,14171..14316,16148..16551))
location: region:6407-16551:-1
so has part: feature:16148-16551:-1:exon
so has part: feature:14171-14316:-1:exon
so has part: feature:12474-12569:-1:exon
so has part: feature:10704-10840:-1:exon
so has part: feature:8288-8385:-1:exon
so has part: feature:7565-7712:-1:exon
so has part: feature:6407-6641:-1:exon

position:16551:-1
position: 16551
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16148-16551:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:14171-14316:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:12474-12569:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:10704-10840:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:8288-8385:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:7565-7712:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:6407-6641:-1:exon

STK19
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: STK19
product: serine/threonine kinase 19, transcript variant X6
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 13 samples with support for all annotated introns
transcript id: XM_041712808.1
SIO_010081: STK19
subclass of: SO_0000673
so part of: STK19
location: complement(join(6561..6641,8288..8385,10704..10840,12474..12569,14171..14316,16148..16571))
location: region:6561-16571:-1
so has part: feature:16148-16571:-1:exon
so has part: feature:14171-14316:-1:exon
so has part: feature:12474-12569:-1:exon
so has part: feature:10704-10840:-1:exon
so has part: feature:8288-8385:-1:exon
so has part: feature:6561-6641:-1:exon

position:6561:-1
position: 6561
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16148-16571:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:14171-14316:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:12474-12569:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:10704-10840:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:8288-8385:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:6561-6641:-1:exon

STK19
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: STK19
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: serine/threonine-protein kinase 19 isoform X7
translation: MSRRRRRLEDPRAALEAKRRRPGLPAEPPRPDGSPAAVEAALGAVAALFPRRLFGDALPPLLLRHQLYSLVPDRTAVDRHLERLRAEGRLRLLHLGLGPDALGVVSARLYREKALAAVAGSPREPLVRRFLEVAVAARPELSYGERQLVAVGLLTVRDVGSWWVAVPGIGRFVRALLRASRPPRVPCCDWLSRDPDL
SIO_010081: STK19
subclass of: SO_0000673
so part of: STK19
location: complement(join(6583..6641,8288..8385,10743..10840,12474..12569,14171..14316,16148..16244))
location: region:6583-16244:-1
so has part: feature:16148-16244:-1:exon
so has part: feature:14171-14316:-1:exon
so has part: feature:12474-12569:-1:exon
so has part: feature:10743-10840:-1:exon
so has part: feature:8288-8385:-1:exon
so has part: feature:6583-6641:-1:exon

XP_041568743.1
type: Protein
SIO_000068: ncbiprotein

position:6583:-1
position: 6583
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16244:-1
position: 16244
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16148-16244:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:14171-14316:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:12474-12569:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:10743-10840:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:8288-8385:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:6583-6641:-1:exon

STK19
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: STK19
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: serine/threonine-protein kinase 19 isoform X6
translation: MSRRRRRLEDPRAALEAKRRRPGLPAEPPRPDGSPAAVEAALGAVAALFPRRLFGDALPPLLLRHQLYSLVPDRTAVDRHLERLRAEGRLRLLHLGLGPDALGVVSARLYREKALAAVAGSPREPLVRRFLEVAVAARPELSYGERDMRDMGFGDSDVTQLVAVGLLTVRDVGSWWVAVPGIGRFVRALLRASRPPRVPCCDWLSRDPDL
SIO_010081: STK19
subclass of: SO_0000673
so part of: STK19
location: complement(join(6583..6641,8288..8385,10704..10840,12474..12569,14171..14316,16148..16244))
location: region:6583-16244:-1
so has part: feature:16148-16244:-1:exon
so has part: feature:14171-14316:-1:exon
so has part: feature:12474-12569:-1:exon
so has part: feature:10704-10840:-1:exon
so has part: feature:8288-8385:-1:exon
so has part: feature:6583-6641:-1:exon

XP_041568742.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16148-16244:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:14171-14316:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:12474-12569:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:10704-10840:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:8288-8385:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:6583-6641:-1:exon

STK19
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: STK19
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: serine/threonine-protein kinase 19 isoform X5
translation: MSRRRRRLEDPRAALEAKRRRPGLPAEPPRPDGSPAAVEAALGAVAALFPRRLFGDALPPLLLRHQLYSLVPDRTAVDRHLALAAVAGSPREPLVRRFLEVAVAARPELSYGERQLVAVGLLTVRDVGSWWVAVPGIGRFVRALLRGRRALLSLFRRARLRQLPQGALGGGKTPPGAALGVPFLLHDLLGEGRLVSVPTPAGPLLRLAEP
SIO_010081: STK19
subclass of: SO_0000673
so part of: STK19
location: complement(join(6596..6641,7565..7712,8288..8385,10743..10840,14171..14316,16148..16244))
location: region:6596-16244:-1
so has part: feature:16148-16244:-1:exon
so has part: feature:14171-14316:-1:exon
so has part: feature:10743-10840:-1:exon
so has part: feature:8288-8385:-1:exon
so has part: feature:7565-7712:-1:exon
so has part: feature:6596-6641:-1:exon

XP_041568741.1
type: Protein
SIO_000068: ncbiprotein

position:6596:-1
position: 6596
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16148-16244:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:14171-14316:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:10743-10840:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:8288-8385:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:7565-7712:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:6596-6641:-1:exon

STK19
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: STK19
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: serine/threonine-protein kinase 19 isoform X3
translation: MSRRRRRLEDPRAALEAKRRRPGLPAEPPRPDGSPAAVEAALGAVAALFPRRLFGDALPPLLLRHQLYSLVPDRTAVDRHLALAAVAGSPREPLVRRFLEVAVAARPELSYGERDMRDMGFGDSDVTQLVAVGLLTVRDVGSWWVAVPGIGRFVRALLRGRRALLSLFRRARLRQLPQGALGGGKTPPGAALGVPFLLHDLLGEGRLVSVPTPAGPLLRLAEP
SIO_010081: STK19
subclass of: SO_0000673
so part of: STK19
location: complement(join(6596..6641,7565..7712,8288..8385,10704..10840,14171..14316,16148..16244))
location: region:6596-16244:-1
so has part: feature:16148-16244:-1:exon
so has part: feature:14171-14316:-1:exon
so has part: feature:10704-10840:-1:exon
so has part: feature:8288-8385:-1:exon
so has part: feature:7565-7712:-1:exon
so has part: feature:6596-6641:-1:exon

XP_041568739.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16148-16244:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:14171-14316:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:10704-10840:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:8288-8385:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:7565-7712:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:6596-6641:-1:exon

STK19
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: STK19
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: serine/threonine-protein kinase 19 isoform X2
translation: MSRRRRRLEDPRAALEAKRRRPGLPAEPPRPDGSPAAVEAALGAVAALFPRRLFGDALPPLLLRHQLYSLVPDRTAVDRHLERLRAEGRLRLLHLGLGPDALGVVSARLYREKALAAVAGSPREPLVRRFLEVAVAARPELSYGERQLVAVGLLTVRDVGSWWVAVPGIGRFVRALLRGRRALLSLFRRARLRQLPQGALGGGKTPPGAALGVPFLLHDLLGEGRLVSVPTPAGPLLRLAEP
SIO_010081: STK19
subclass of: SO_0000673
so part of: STK19
location: complement(join(6596..6641,7565..7712,8288..8385,10743..10840,12474..12569,14171..14316,16148..16244))
location: region:6596-16244:-1
so has part: feature:16148-16244:-1:exon
so has part: feature:14171-14316:-1:exon
so has part: feature:12474-12569:-1:exon
so has part: feature:10743-10840:-1:exon
so has part: feature:8288-8385:-1:exon
so has part: feature:7565-7712:-1:exon
so has part: feature:6596-6641:-1:exon

XP_041568738.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16148-16244:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:14171-14316:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:12474-12569:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:10743-10840:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:8288-8385:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:7565-7712:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:6596-6641:-1:exon

STK19
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: STK19
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: serine/threonine-protein kinase 19 isoform X1
translation: MSRRRRRLEDPRAALEAKRRRPGLPAEPPRPDGSPAAVEAALGAVAALFPRRLFGDALPPLLLRHQLYSLVPDRTAVDRHLERLRAEGRLRLLHLGLGPDALGVVSARLYREKALAAVAGSPREPLVRRFLEVAVAARPELSYGERDMRDMGFGDSDVTQLVAVGLLTVRDVGSWWVAVPGIGRFVRALLRGRRALLSLFRRARLRQLPQGALGGGKTPPGAALGVPFLLHDLLGEGRLVSVPTPAGPLLRLAEP
SIO_010081: STK19
subclass of: SO_0000673
so part of: STK19
location: complement(join(6596..6641,7565..7712,8288..8385,10704..10840,12474..12569,14171..14316,16148..16244))
location: region:6596-16244:-1
so has part: feature:16148-16244:-1:exon
so has part: feature:14171-14316:-1:exon
so has part: feature:12474-12569:-1:exon
so has part: feature:10704-10840:-1:exon
so has part: feature:8288-8385:-1:exon
so has part: feature:7565-7712:-1:exon
so has part: feature:6596-6641:-1:exon

XP_041568737.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16148-16244:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:14171-14316:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:12474-12569:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:10704-10840:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:8288-8385:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:7565-7712:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:6596-6641:-1:exon

STK19
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: STK19
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: serine/threonine-protein kinase 19 isoform X4
translation: MSRRRRRLEDPRAALEAKRRRPGLPAEPPRPDGSPAAVEAALGAVAALFPRRLFGDALPPLLLRHQLYSLVPDRTAVDRHLERLRAEGRLRLLHLGLGPDALGVVSARLYREKALAAVAGSPREPLVRRFLEVAVAARPELSYGERDMRDMGFGDSDVTPPGAAVSVPSGAAAAAAPGGAGGGQNPPGGRPGGPVPAARPAGGGAARERPDPRGSPAAIG
SIO_010081: STK19
subclass of: SO_0000673
so part of: STK19
location: complement(join(6603..6641,7565..7712,10704..10840,12474..12569,14171..14316,16148..16244))
location: region:6603-16244:-1
so has part: feature:16148-16244:-1:exon
so has part: feature:14171-14316:-1:exon
so has part: feature:12474-12569:-1:exon
so has part: feature:10704-10840:-1:exon
so has part: feature:7565-7712:-1:exon
so has part: feature:6603-6641:-1:exon

XP_041568740.1
type: Protein
SIO_000068: ncbiprotein

position:6603:-1
position: 6603
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16148-16244:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:14171-14316:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:12474-12569:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:10704-10840:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:7565-7712:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:6603-6641:-1:exon

SKIV2L
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: SKIV2L
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(17055..>45944)
location: region:17055-45944:-1
so has part: feature:17055-45944:-1:exon
subclass of: SO_0000010

121468752
type: Gene
SIO_000068: ncbigene

position:17055:-1
position: 17055
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:45944:-1
position: 45944
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17055-45944:-1:exon

SKIV2L
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: SKIV2L
product: Ski2 like RNA helicase
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 14 samples with support for all annotated introns
transcript id: XM_041712810.1
SIO_010081: SKIV2L
subclass of: SO_0000673
so part of: SKIV2L
location: complement(join(17055..17308,18901..19041,20567..20785,23897..24007,24100..24307,25918..26044,28349..28493,31013..31114,31798..31992,33820..33957,35097..35215,37492..37603,38589..38699,40817..41029,41696..41795,42890..43036,45787..>45944))
location: region:17055-45944:-1
so has part: feature:45787-45944:-1:exon
so has part: feature:42890-43036:-1:exon
so has part: feature:41696-41795:-1:exon
so has part: feature:40817-41029:-1:exon
so has part: feature:38589-38699:-1:exon
so has part: feature:37492-37603:-1:exon
so has part: feature:35097-35215:-1:exon
so has part: feature:33820-33957:-1:exon
so has part: feature:31798-31992:-1:exon
so has part: feature:31013-31114:-1:exon
so has part: feature:28349-28493:-1:exon
so has part: feature:25918-26044:-1:exon
so has part: feature:24100-24307:-1:exon
so has part: feature:23897-24007:-1:exon
so has part: feature:20567-20785:-1:exon
so has part: feature:18901-19041:-1:exon
so has part: feature:17055-17308:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:45787-45944:-1:exon

position:45787:-1
position: 45787
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:42890-43036:-1:exon

position:42890:-1
position: 42890
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:43036:-1
position: 43036
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:41696-41795:-1:exon

position:41696:-1
position: 41696
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:41795:-1
position: 41795
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:40817-41029:-1:exon

position:40817:-1
position: 40817
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:41029:-1
position: 41029
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:38589-38699:-1:exon

position:38589:-1
position: 38589
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:38699:-1
position: 38699
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:37492-37603:-1:exon

position:37492:-1
position: 37492
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:37603:-1
position: 37603
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:35097-35215:-1:exon

position:35097:-1
position: 35097
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:35215:-1
position: 35215
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:33820-33957:-1:exon

position:33820:-1
position: 33820
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:33957:-1
position: 33957
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:31798-31992:-1:exon

position:31798:-1
position: 31798
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:31992:-1
position: 31992
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:31013-31114:-1:exon

position:31013:-1
position: 31013
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:31114:-1
position: 31114
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:28349-28493:-1:exon

position:28349:-1
position: 28349
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:28493:-1
position: 28493
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:25918-26044:-1:exon

position:25918:-1
position: 25918
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:26044:-1
position: 26044
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:24100-24307:-1:exon

position:24100:-1
position: 24100
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:24307:-1
position: 24307
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:23897-24007:-1:exon

position:23897:-1
position: 23897
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:24007:-1
position: 24007
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:20567-20785:-1:exon

position:20567:-1
position: 20567
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:20785:-1
position: 20785
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:18901-19041:-1:exon

position:18901:-1
position: 18901
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:19041:-1
position: 19041
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:17055-17308:-1:exon

position:17308:-1
position: 17308
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

SKIV2L
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: SKIV2L
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: helicase SKI2W
translation: FGGSQGVLGTPLTPSPQRGVVWEEVLILLPEHVKLVLLSATVPNALEFAQWVGRTKRRCVRVISTPRRPVPLEHFLFTGNSSRTRHQLFQLLGPGGAFSTQGYYAAVEAKKEQSSKHAQSFGARQPTLGGPNPGQERGVWLSLLETLRERELLPAVTFTFSRGRCEEQAAALGSLELLDGPERARVRQFLTRCLARLRGSDRRLPQVLQLSELLQRGIGVHHGGVLPLLKEIVEMLFSQGLVKVLFATETFAMGVNMPARTVVFDSIRKHDGNSFRDLLPGEYTQMSGRAGRRGLDATGTVIILCKGPVPELADLHRMMLGRPSPLQSRFRLTYPMILLLLRAPALRPHDLMRRSFAEFPLRRDTTAQTRRVAALREALAALGDPEGTAGDSGGDTGDSGGDTGDTGGDTGDLPQYHQAVVALRRARAVLQRCLAQPGGQRVLAPGRVVVVCTARHRNALGLVLQVSSGGSGRTFTTLVLSEKPPEDGGAPPEPPPDVPYPEDLLLTRLFLPEGPPGHCLEQLRPEDIVGVTAKTLRVNPEILLQELRPPRGPRPRSPPPGGGLGGVLQELSRLSGGATPVPLLEAFGVPPGRDPAAAAAAAELRGLSAALRGFGCVHSPRFARQYAQFAARQELLEQLEELQFQLSDQSLLLLPEYHQRLEVLSELGYVSGGAVALGGRVAALLSTEQLVLTELLLSNALSPLRPEESAALLSCLVTPGRGDPLPEGLPPALAQALERLRAVAARVARLEQQRGLGPGPDEFVAQFGFSLVQVVYEWARGMPFAEIARRAPVQEGTVVRAMQRLEELLRELRHAARLVGDPALGAKMEAAAAMIKRDIVFAASLYTQ
SIO_010081: SKIV2L
subclass of: SO_0000673
so part of: SKIV2L
location: complement(join(17108..17308,18901..19041,20567..20785,23897..24007,24100..24307,25918..26044,28349..28493,31013..31114,31798..31992,33820..33957,35097..35215,37492..37603,38589..38699,40817..41029,41696..41795,42890..43036,45787..>45944))
location: region:17108-45944:-1
so has part: feature:45787-45944:-1:exon
so has part: feature:42890-43036:-1:exon
so has part: feature:41696-41795:-1:exon
so has part: feature:40817-41029:-1:exon
so has part: feature:38589-38699:-1:exon
so has part: feature:37492-37603:-1:exon
so has part: feature:35097-35215:-1:exon
so has part: feature:33820-33957:-1:exon
so has part: feature:31798-31992:-1:exon
so has part: feature:31013-31114:-1:exon
so has part: feature:28349-28493:-1:exon
so has part: feature:25918-26044:-1:exon
so has part: feature:24100-24307:-1:exon
so has part: feature:23897-24007:-1:exon
so has part: feature:20567-20785:-1:exon
so has part: feature:18901-19041:-1:exon
so has part: feature:17108-17308:-1:exon

XP_041568744.1
type: Protein
SIO_000068: ncbiprotein

position:17108:-1
position: 17108
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:45787-45944:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:42890-43036:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:41696-41795:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:40817-41029:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:38589-38699:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:37492-37603:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:35097-35215:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:33820-33957:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:31798-31992:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:31013-31114:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:28349-28493:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:25918-26044:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:24100-24307:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:23897-24007:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:20567-20785:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:18901-19041:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:17108-17308:-1:exon

NELFE
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: NELFE
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 49582..59464
location: region:49582-59464:1
so has part: feature:49582-59464:1:exon
subclass of: SO_0000010

121468754
type: Gene
SIO_000068: ncbigene

position:49582:1
position: 49582
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:59464:1
position: 59464
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:49582-59464:1:exon

NELFE
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: NELFE
product: negative elongation factor complex member E
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 110 samples with support for all annotated introns
transcript id: XM_041712814.1
SIO_010081: NELFE
subclass of: SO_0000673
so part of: NELFE
location: join(49582..49724,50506..50578,51840..51985,53845..53919,54040..54074,55274..55413,56397..56541,57094..57148,58040..58142,59279..59464)
location: region:49582-59464:1
so has part: feature:49582-49724:1:exon
so has part: feature:50506-50578:1:exon
so has part: feature:51840-51985:1:exon
so has part: feature:53845-53919:1:exon
so has part: feature:54040-54074:1:exon
so has part: feature:55274-55413:1:exon
so has part: feature:56397-56541:1:exon
so has part: feature:57094-57148:1:exon
so has part: feature:58040-58142:1:exon
so has part: feature:59279-59464:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:49582-49724:1:exon

position:49724:1
position: 49724
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:50506-50578:1:exon

position:50506:1
position: 50506
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:50578:1
position: 50578
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:51840-51985:1:exon

position:51840:1
position: 51840
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:51985:1
position: 51985
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:53845-53919:1:exon

position:53845:1
position: 53845
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:53919:1
position: 53919
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:54040-54074:1:exon

position:54040:1
position: 54040
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:54074:1
position: 54074
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:55274-55413:1:exon

position:55274:1
position: 55274
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:55413:1
position: 55413
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:56397-56541:1:exon

position:56397:1
position: 56397
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:56541:1
position: 56541
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:57094-57148:1:exon

position:57094:1
position: 57094
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:57148:1
position: 57148
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:58040-58142:1:exon

position:58040:1
position: 58040
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:58142:1
position: 58142
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:59279-59464:1:exon

position:59279:1
position: 59279
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

NELFE
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: NELFE
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: negative elongation factor E
translation: MLSLPPGLSEEEEALQKRFGKLRKKKKALLALKKQQSGGGGSGQGGIKRSMSDQPPLDTAMATEQAKLLVKSGAISAIKAENKNSGFKRSRTLEGKLKDPEKGPTPTFQPFQRSVSADDDSQESRRPQRKSLYESFVSASERLREPEGGARGEPPERGERRLDWDPDPEAEERRERDGTFRRSDSFPERRPPRKGNTLYVHGADLSPELLRGAFGPFGAIIDLSLDTPRNCAFVTFEKMESADQAMAELNGAVVQDVQLKVSIARKQPLLDAATGKSLWGSLAVKNSAKGSHRDKRSQVVYNEDLFGGH
SIO_010081: NELFE
subclass of: SO_0000673
so part of: NELFE
location: join(49650..49724,50506..50578,51840..51985,53845..53919,54040..54074,55274..55413,56397..56541,57094..57148,58040..58142,59279..59361)
location: region:49650-59361:1
so has part: feature:49650-49724:1:exon
so has part: feature:50506-50578:1:exon
so has part: feature:51840-51985:1:exon
so has part: feature:53845-53919:1:exon
so has part: feature:54040-54074:1:exon
so has part: feature:55274-55413:1:exon
so has part: feature:56397-56541:1:exon
so has part: feature:57094-57148:1:exon
so has part: feature:58040-58142:1:exon
so has part: feature:59279-59361:1:exon

XP_041568748.1
type: Protein
SIO_000068: ncbiprotein

position:49650:1
position: 49650
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:59361:1
position: 59361
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:49650-49724:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:50506-50578:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:51840-51985:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:53845-53919:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:54040-54074:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:55274-55413:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:56397-56541:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:57094-57148:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:58040-58142:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:59279-59361:1:exon

LOC121468755
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: LOC121468755
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(59278..59544)
location: region:59278-59544:-1
so has part: feature:59278-59544:-1:exon
subclass of: SO_0000011

121468755
type: Gene
SIO_000068: ncbigene

position:59278:-1
position: 59278
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:59544:-1
position: 59544
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:59278-59544:-1:exon

LOC121468755
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 59729
nc RNA class: lncRNA
gene: LOC121468755
product: uncharacterized LOC121468755
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XR_005978570.1
SIO_010081: LOC121468755
subclass of: SO_0000673
so part of: LOC121468755
location: complement(join(59278..59371,59497..59544))
location: region:59278-59544:-1
so has part: feature:59497-59544:-1:exon
so has part: feature:59278-59371:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:59497-59544:-1:exon

position:59497:-1
position: 59497
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:59278-59371:-1:exon

position:59371:-1
position: 59371
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

CFB
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: CFB
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(59759..82514)
location: region:59759-82514:-1
so has part: feature:59759-82514:-1:exon
subclass of: SO_0000010

121468753
type: Gene
SIO_000068: ncbigene

position:59759:-1
position: 59759
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:82514:-1
position: 82514
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:59759-82514:-1:exon

CFB
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: CFB
product: complement factor B
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_041712813.1
SIO_010081: CFB
subclass of: SO_0000673
so part of: CFB
location: complement(join(59759..59813,60788..60936,61465..61514,62407..62539,64344..64447,66371..66447,66541..66691,68379..68496,70034..70131,71314..71451,72523..72624,73529..73681,74796..74934,75881..76017,76993..77088,77348..77527,79021..79206,81711..81936,82394..82514))
location: region:59759-82514:-1
so has part: feature:82394-82514:-1:exon
so has part: feature:81711-81936:-1:exon
so has part: feature:79021-79206:-1:exon
so has part: feature:77348-77527:-1:exon
so has part: feature:76993-77088:-1:exon
so has part: feature:75881-76017:-1:exon
so has part: feature:74796-74934:-1:exon
so has part: feature:73529-73681:-1:exon
so has part: feature:72523-72624:-1:exon
so has part: feature:71314-71451:-1:exon
so has part: feature:70034-70131:-1:exon
so has part: feature:68379-68496:-1:exon
so has part: feature:66541-66691:-1:exon
so has part: feature:66371-66447:-1:exon
so has part: feature:64344-64447:-1:exon
so has part: feature:62407-62539:-1:exon
so has part: feature:61465-61514:-1:exon
so has part: feature:60788-60936:-1:exon
so has part: feature:59759-59813:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:82394-82514:-1:exon

position:82394:-1
position: 82394
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:81711-81936:-1:exon

position:81711:-1
position: 81711
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:81936:-1
position: 81936
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:79021-79206:-1:exon

position:79021:-1
position: 79021
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:79206:-1
position: 79206
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:77348-77527:-1:exon

position:77348:-1
position: 77348
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:77527:-1
position: 77527
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:76993-77088:-1:exon

position:76993:-1
position: 76993
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:77088:-1
position: 77088
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:75881-76017:-1:exon

position:75881:-1
position: 75881
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:76017:-1
position: 76017
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:74796-74934:-1:exon

position:74796:-1
position: 74796
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:74934:-1
position: 74934
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:73529-73681:-1:exon

position:73529:-1
position: 73529
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:73681:-1
position: 73681
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:72523-72624:-1:exon

position:72523:-1
position: 72523
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:72624:-1
position: 72624
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:71314-71451:-1:exon

position:71314:-1
position: 71314
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:71451:-1
position: 71451
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:70034-70131:-1:exon

position:70034:-1
position: 70034
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:70131:-1
position: 70131
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:68379-68496:-1:exon

position:68379:-1
position: 68379
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:68496:-1
position: 68496
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:66541-66691:-1:exon

position:66541:-1
position: 66541
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:66691:-1
position: 66691
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:66371-66447:-1:exon

position:66371:-1
position: 66371
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:66447:-1
position: 66447
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:64344-64447:-1:exon

position:64344:-1
position: 64344
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:64447:-1
position: 64447
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:62407-62539:-1:exon

position:62407:-1
position: 62407
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:62539:-1
position: 62539
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:61465-61514:-1:exon

position:61465:-1
position: 61465
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:61514:-1
position: 61514
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:60788-60936:-1:exon

position:60788:-1
position: 60788
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:60936:-1
position: 60936
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:59759-59813:-1:exon

position:59813:-1
position: 59813
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

CFB
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: CFB
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: complement factor B
translation: MEGSRSRFAVEGLVRFRCRPGLQLVGSAERRCLEGGFWSGTEPRCRDPNSFDTPEDAAEAFMASLTQTVEAAEANSTHDPTAKRRIRLEAGGALNVFLVLDASRSVNARDYENARAALGELVEKLASLGAAPRYGVVTFGSEPRVELSPTEPNATHGGWVRQRLRELRLDAHSQAPGTNLAGALRAVYALLVQQERAERLRGLRPAPVTNSTRHVLVIMTDGRANMGGSPVPVLHQIRELLSIGRDPRDPREEFLDVYAFGLGEEAHAETLNALASHKAGEQHVFFLRDTEDLQEVFHRMIDESSTLGLCGVSLEFGRADDRERNPWEVTVTVTRPGRGQERCQGSLVSPYFVLSAAHCFSGHDLPTWLSVDIGPRERRGVRGLFLHPEFSPGGRRSRGVPEFYDFDAALLQLDRPVRPSPTHRPICIPCTEGAARALRLPEGSSCQEHRRLLLPPKNVEAFFVSPRGSAGLQRQQILLKLGEQRAPCEADALRAAPYANVTSLEDIVTPRFLCSGGHEPRVDPVACPGDSGGPVVVTWGQRHFQVGVVSWGVVPACRQRRSPAHARDFHLSVFEVLPWLRERLRDEELGFLP
SIO_010081: CFB
subclass of: SO_0000673
so part of: CFB
location: complement(join(60790..60936,61465..61514,62407..62539,64344..64447,66371..66447,66541..66691,68379..68496,70034..70131,71314..71451,72523..72624,73529..73681,74796..74934,75881..76017,76993..77088,77348..77486))
location: region:60790-77486:-1
so has part: feature:77348-77486:-1:exon
so has part: feature:76993-77088:-1:exon
so has part: feature:75881-76017:-1:exon
so has part: feature:74796-74934:-1:exon
so has part: feature:73529-73681:-1:exon
so has part: feature:72523-72624:-1:exon
so has part: feature:71314-71451:-1:exon
so has part: feature:70034-70131:-1:exon
so has part: feature:68379-68496:-1:exon
so has part: feature:66541-66691:-1:exon
so has part: feature:66371-66447:-1:exon
so has part: feature:64344-64447:-1:exon
so has part: feature:62407-62539:-1:exon
so has part: feature:61465-61514:-1:exon
so has part: feature:60790-60936:-1:exon

XP_041568747.1
type: Protein
SIO_000068: ncbiprotein

position:60790:-1
position: 60790
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:77486:-1
position: 77486
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:77348-77486:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:76993-77088:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:75881-76017:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:74796-74934:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:73529-73681:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:72523-72624:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:71314-71451:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:70034-70131:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:68379-68496:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:66541-66691:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:66371-66447:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:64344-64447:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:62407-62539:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:61465-61514:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:60790-60936:-1:exon

LOC121468759
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: LOC121468759
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(<87511..89728)
location: region:87511-89728:-1
so has part: feature:87511-89728:-1:exon
subclass of: SO_0000010

121468759
type: Gene
SIO_000068: ncbigene

position:87511:-1
position: 87511
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:89728:-1
position: 89728
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:87511-89728:-1:exon

LOC121468759
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: LOC121468759
product: uncharacterized LOC121468759
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 98% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_041712847.1
SIO_010081: LOC121468759
subclass of: SO_0000673
so part of: LOC121468759
location: complement(join(<87511..87545,87680..89257,89725..89728))
location: region:87511-89728:-1
so has part: feature:89725-89728:-1:exon
so has part: feature:87680-89257:-1:exon
so has part: feature:87511-87545:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:89725-89728:-1:exon

position:89725:-1
position: 89725
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:87680-89257:-1:exon

position:87680:-1
position: 87680
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:89257:-1
position: 89257
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:87511-87545:-1:exon

position:87545:-1
position: 87545
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC121468759
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: LOC121468759
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: uncharacterized protein LOC121468759
translation: MDIGDIGDVGDRAVPTLIVTVLRDATGDGDTGDREVATPGDTWDRDTGDGDTGDRDIGDIGDTPALALQDLGDRAVTSPGDIGDRDRGDGDIVDGDVTTPGDIWDRDTGDGDVAAVGDIGDGDRDIGDIGDSAVPAPGDIGAVTCRAGGVTITVLAPPPEEAEPGDDVIAYDVTAAGEGGDVTEGWGSPAPPPAGDVTADVIADITDDVTSDVTSDATGGDDVTSSVPEEVPAGDVIAGGDVITPRPASGVADDVSASRSDVIGDVVAPGRDLLDDVIIGPDLTGDITAKSDFPRDLDDVTDDIITTGDVITPDVADDIIKHGFPCDVISWGDVTAPLPGGDDVTPGNDIIDCASVGDVIAVCCVPPLPGDDVTDDVIPGGRRLDDVIHGGDLADDVTEDDDDDVTFPGLGLLPADDVTAADDVTSSLAGDVTGGLDAAWDDLVDDVTADDDVTADDDVTADDDITPFLPLGCPPDPDDDVSDDVTDDVAQGAEKPLLGSAPFSRRHDAGDDVSDDVTEDAPRGGGAGAPQTPPPRLPP
SIO_010081: LOC121468759
subclass of: SO_0000673
so part of: LOC121468759
location: complement(join(<87511..87545,87680..89257,89725..89728))
location: region:87511-89728:-1
so has part: feature:89725-89728:-1:exon
so has part: feature:87680-89257:-1:exon
so has part: feature:87511-87545:-1:exon

XP_041568781.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:89725-89728:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:87680-89257:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:87511-87545:-1:exon

VARS2
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: VARS2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(91065..111413)
location: region:91065-111413:-1
so has part: feature:91065-111413:-1:exon
subclass of: SO_0000010

121468708
type: Gene
SIO_000068: ncbigene

position:91065:-1
position: 91065
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:111413:-1
position: 111413
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:91065-111413:-1:exon

VARS2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: VARS2
product: valyl-tRNA synthetase 2, mitochondrial, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 32 samples with support for all annotated introns
transcript id: XM_041712717.1
SIO_010081: VARS2
subclass of: SO_0000673
so part of: VARS2
location: complement(join(91065..91236,91639..91811,92241..92355,93456..93656,94927..95079,96571..96701,97565..97643,98209..98277,99246..99350,99791..99916,101087..101157,101981..102234,102523..102599,105325..105452,106027..106117,106531..106619,107597..107708,109570..109689,111110..111191,111299..111413))
location: region:91065-111413:-1
so has part: feature:111299-111413:-1:exon
so has part: feature:111110-111191:-1:exon
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so has part: feature:107597-107708:-1:exon
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so has part: feature:99791-99916:-1:exon
so has part: feature:99246-99350:-1:exon
so has part: feature:98209-98277:-1:exon
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so has part: feature:93456-93656:-1:exon
so has part: feature:92241-92355:-1:exon
so has part: feature:91639-91811:-1:exon
so has part: feature:91065-91236:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:111299-111413:-1:exon

position:111299:-1
position: 111299
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:111110-111191:-1:exon

position:111110:-1
position: 111110
reference: sequence
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position:111191:-1
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urn:…
SIO_000300: 3
SIO_000628: feature:109570-109689:-1:exon

position:109570:-1
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type: ReverseStrandPosition
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position:109689:-1
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urn:…
SIO_000300: 4
SIO_000628: feature:107597-107708:-1:exon

position:107597:-1
position: 107597
reference: sequence
type: ReverseStrandPosition
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position:107708:-1
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urn:…
SIO_000300: 5
SIO_000628: feature:106531-106619:-1:exon

position:106531:-1
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position:106619:-1
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urn:…
SIO_000300: 6
SIO_000628: feature:106027-106117:-1:exon

position:106027:-1
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position:106117:-1
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urn:…
SIO_000300: 7
SIO_000628: feature:105325-105452:-1:exon

position:105325:-1
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reference: sequence
type: ReverseStrandPosition
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position:105452:-1
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urn:…
SIO_000300: 8
SIO_000628: feature:102523-102599:-1:exon

position:102523:-1
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reference: sequence
type: ReverseStrandPosition
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position:102599:-1
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urn:…
SIO_000300: 9
SIO_000628: feature:101981-102234:-1:exon

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urn:…
SIO_000300: 10
SIO_000628: feature:101087-101157:-1:exon

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urn:…
SIO_000300: 11
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reference: sequence
type: ReverseStrandPosition
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urn:…
SIO_000300: 12
SIO_000628: feature:99246-99350:-1:exon

position:99246:-1
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position:99350:-1
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urn:…
SIO_000300: 13
SIO_000628: feature:98209-98277:-1:exon

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urn:…
SIO_000300: 14
SIO_000628: feature:97565-97643:-1:exon

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urn:…
SIO_000300: 15
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urn:…
SIO_000300: 16
SIO_000628: feature:94927-95079:-1:exon

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urn:…
SIO_000300: 17
SIO_000628: feature:93456-93656:-1:exon

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urn:…
SIO_000300: 18
SIO_000628: feature:92241-92355:-1:exon

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position:92355:-1
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urn:…
SIO_000300: 19
SIO_000628: feature:91639-91811:-1:exon

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position:91811:-1
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urn:…
SIO_000300: 20
SIO_000628: feature:91065-91236:-1:exon

position:91236:-1
position: 91236
reference: sequence
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VARS2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: VARS2
product: valyl-tRNA synthetase 2, mitochondrial, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 73 samples with support for all annotated introns
transcript id: XM_041712714.1
SIO_010081: VARS2
subclass of: SO_0000673
so part of: VARS2
location: complement(join(91065..91236,91639..91811,92241..92355,93456..93656,94927..95079,96571..96701,97565..97643,98209..98277,99246..99350,99791..99916,101087..101157,101981..102234,102523..102599,103340..103421,104450..104553,105325..105452,106027..106117,106531..106619,107597..107708,109570..109689,111110..111191,111299..111413))
location: region:91065-111413:-1
so has part: feature:111299-111413:-1:exon
so has part: feature:111110-111191:-1:exon
so has part: feature:109570-109689:-1:exon
so has part: feature:107597-107708:-1:exon
so has part: feature:106531-106619:-1:exon
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so has part: feature:97565-97643:-1:exon
so has part: feature:96571-96701:-1:exon
so has part: feature:94927-95079:-1:exon
so has part: feature:93456-93656:-1:exon
so has part: feature:92241-92355:-1:exon
so has part: feature:91639-91811:-1:exon
so has part: feature:91065-91236:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:111299-111413:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:111110-111191:-1:exon

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SIO_000300: 3
SIO_000628: feature:109570-109689:-1:exon

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SIO_000300: 4
SIO_000628: feature:107597-107708:-1:exon

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SIO_000300: 5
SIO_000628: feature:106531-106619:-1:exon

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SIO_000300: 6
SIO_000628: feature:106027-106117:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:105325-105452:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:104450-104553:-1:exon

position:104450:-1
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reference: sequence
type: ReverseStrandPosition
type: ExactPosition

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reference: sequence
type: ReverseStrandPosition
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urn:…
SIO_000300: 9
SIO_000628: feature:103340-103421:-1:exon

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position: 103340
reference: sequence
type: ReverseStrandPosition
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position:103421:-1
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reference: sequence
type: ReverseStrandPosition
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urn:…
SIO_000300: 10
SIO_000628: feature:102523-102599:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:101981-102234:-1:exon

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SIO_000300: 12
SIO_000628: feature:101087-101157:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:99791-99916:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:99246-99350:-1:exon

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SIO_000300: 15
SIO_000628: feature:98209-98277:-1:exon

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SIO_000300: 16
SIO_000628: feature:97565-97643:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:96571-96701:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:94927-95079:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:93456-93656:-1:exon

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SIO_000300: 20
SIO_000628: feature:92241-92355:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:91639-91811:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:91065-91236:-1:exon

VARS2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: VARS2
product: valyl-tRNA synthetase 2, mitochondrial, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 54 samples with support for all annotated introns
transcript id: XM_041712715.1
SIO_010081: VARS2
subclass of: SO_0000673
so part of: VARS2
location: complement(join(91065..91236,91639..91811,92241..92355,93456..93656,94927..95079,96571..96701,97565..97643,98209..98277,99246..99350,99791..99916,101087..101157,101981..102234,102523..102599,103340..103421,104450..104553,105325..105452,106027..106117,106531..106619,107597..107708,108388..108549))
location: region:91065-108549:-1
so has part: feature:108388-108549:-1:exon
so has part: feature:107597-107708:-1:exon
so has part: feature:106531-106619:-1:exon
so has part: feature:106027-106117:-1:exon
so has part: feature:105325-105452:-1:exon
so has part: feature:104450-104553:-1:exon
so has part: feature:103340-103421:-1:exon
so has part: feature:102523-102599:-1:exon
so has part: feature:101981-102234:-1:exon
so has part: feature:101087-101157:-1:exon
so has part: feature:99791-99916:-1:exon
so has part: feature:99246-99350:-1:exon
so has part: feature:98209-98277:-1:exon
so has part: feature:97565-97643:-1:exon
so has part: feature:96571-96701:-1:exon
so has part: feature:94927-95079:-1:exon
so has part: feature:93456-93656:-1:exon
so has part: feature:92241-92355:-1:exon
so has part: feature:91639-91811:-1:exon
so has part: feature:91065-91236:-1:exon

position:108549:-1
position: 108549
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:108388-108549:-1:exon

position:108388:-1
position: 108388
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:107597-107708:-1:exon

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SIO_000300: 3
SIO_000628: feature:106531-106619:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:106027-106117:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:105325-105452:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:104450-104553:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:103340-103421:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:102523-102599:-1:exon

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SIO_000300: 9
SIO_000628: feature:101981-102234:-1:exon

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SIO_000300: 10
SIO_000628: feature:101087-101157:-1:exon

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SIO_000300: 11
SIO_000628: feature:99791-99916:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:99246-99350:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:98209-98277:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:97565-97643:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:96571-96701:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:94927-95079:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:93456-93656:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:92241-92355:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:91639-91811:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:91065-91236:-1:exon

VARS2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: VARS2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: valine--tRNA ligase, mitochondrial isoform X3
translation: MMERWLWQTRRLRRQDLGRAEFLREVWRWKERHGDEILRQLRALGASLDWSRCAFTMDPGFSRAVTEAFVRLAAAGLIRRDERVVTWSCALRSALADVEVEPRVLTGPTALSVPNCPHPVTFGLLVTFAYPVEGDDELEVPVATTRPETLFGDVAVAVHPQDPRYLHLQGRQVRHPFSGALLPVVGDPNVQPQRGTGAVKVTPGHSPQDLALARAHALPLLSVIADDGTLRPPGGGWLQAVTSGRLRLVPEFHEKNWRTWMENAGDWCLSRQLWWGHQVPAFQVTGGPRGAPGDPGGAPGGPLGAPGGPLGAPGDPQEGPWFVGRSEAEARAAAAAALGCPPQELHLQQDPDVLDTWFSSALFPFAALGWPEQSPDLRRFYPTSLLVTGSDLLFFWVARMVMLGQQLTGQLPFRQVLLHALVRDPQGRKMSKSLGNVIDPRDVIGGASLQELQEKLRTRTLDPRELQAAQEGQRRQFPQGIPECGADALRLALCTHDAHGPEIRLGVASVLTQRRFCNKVWNAVGFVLGALQGQGGPPKPPEEVVPAAPLDRWLLARLAAAGAEVGARLGALEVQGAVGAVQSFWLRCLCDVYLEVAKVSLRSPQLRPGAVLTLAAAADLGLRLLSPFAPFLAEELWQRLPRAPHAPPSISLAPFPEPRRLAHWRSPELEAQVAAMLELVRTARGLRQTLRLGGAARPPVLVQCPEADRDWLEPLGPAFQALSRAGPVRFLPPGAEPGPGWAGAAAPSGTFVHLRAQSPAGAEPGGAGDPRDPPGTPQGPPQGPLRDPPRSGGAGLVNE
SIO_010081: VARS2
subclass of: SO_0000673
so part of: VARS2
location: complement(join(91108..91236,91639..91811,92241..92355,93456..93656,94927..95079,96571..96701,97565..97643,98209..98277,99246..99350,99791..99916,101087..101157,101981..102234,102523..102599,105325..105452,106027..106117,106531..106619,107597..107708,109570..109689,111110..111191,111299..111393))
location: region:91108-111393:-1
so has part: feature:111299-111393:-1:exon
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so has part: feature:101981-102234:-1:exon
so has part: feature:101087-101157:-1:exon
so has part: feature:99791-99916:-1:exon
so has part: feature:99246-99350:-1:exon
so has part: feature:98209-98277:-1:exon
so has part: feature:97565-97643:-1:exon
so has part: feature:96571-96701:-1:exon
so has part: feature:94927-95079:-1:exon
so has part: feature:93456-93656:-1:exon
so has part: feature:92241-92355:-1:exon
so has part: feature:91639-91811:-1:exon
so has part: feature:91108-91236:-1:exon

XP_041568651.1
type: Protein
SIO_000068: ncbiprotein

position:91108:-1
position: 91108
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:111393:-1
position: 111393
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:111299-111393:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:111110-111191:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:109570-109689:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:107597-107708:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:106531-106619:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:106027-106117:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:105325-105452:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:102523-102599:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:101981-102234:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:101087-101157:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:99791-99916:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:99246-99350:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:98209-98277:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:97565-97643:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:96571-96701:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:94927-95079:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:93456-93656:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:92241-92355:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:91639-91811:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:91108-91236:-1:exon

VARS2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: VARS2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: valine--tRNA ligase, mitochondrial isoform X1
translation: MMERWLWQTRRLRRQDLGRAEFLREVWRWKERHGDEILRQLRALGASLDWSRCAFTMDPGFSRAVTEAFVRLAAAGLIRRDERVVTWSCALRSALADVEVEPRVLTGPTALSVPNCPHPVTFGLLVTFAYPVEGDDELEVPVATTRPETLFGDVAVAVHPQDPRYLHLQGRQVRHPFSGALLPVVGDPNVQPQRGTGAVKVTPGHSPQDLALARAHALPLLSVIADDGTLRPPGGGWLQGVPRFEARDRVVAALAQRGLLRGVQDHAMTLPLCSRSGDVVEFLLKRQWFLSCGDMARAALQAVTSGRLRLVPEFHEKNWRTWMENAGDWCLSRQLWWGHQVPAFQVTGGPRGAPGDPGGAPGGPLGAPGGPLGAPGDPQEGPWFVGRSEAEARAAAAAALGCPPQELHLQQDPDVLDTWFSSALFPFAALGWPEQSPDLRRFYPTSLLVTGSDLLFFWVARMVMLGQQLTGQLPFRQVLLHALVRDPQGRKMSKSLGNVIDPRDVIGGASLQELQEKLRTRTLDPRELQAAQEGQRRQFPQGIPECGADALRLALCTHDAHGPEIRLGVASVLTQRRFCNKVWNAVGFVLGALQGQGGPPKPPEEVVPAAPLDRWLLARLAAAGAEVGARLGALEVQGAVGAVQSFWLRCLCDVYLEVAKVSLRSPQLRPGAVLTLAAAADLGLRLLSPFAPFLAEELWQRLPRAPHAPPSISLAPFPEPRRLAHWRSPELEAQVAAMLELVRTARGLRQTLRLGGAARPPVLVQCPEADRDWLEPLGPAFQALSRAGPVRFLPPGAEPGPGWAGAAAPSGTFVHLRAQSPAGAEPGGAGDPRDPPGTPQGPPQGPLRDPPRSGGAGLVNE
SIO_010081: VARS2
subclass of: SO_0000673
so part of: VARS2
location: complement(join(91108..91236,91639..91811,92241..92355,93456..93656,94927..95079,96571..96701,97565..97643,98209..98277,99246..99350,99791..99916,101087..101157,101981..102234,102523..102599,103340..103421,104450..104553,105325..105452,106027..106117,106531..106619,107597..107708,109570..109689,111110..111191,111299..111393))
location: region:91108-111393:-1
so has part: feature:111299-111393:-1:exon
so has part: feature:111110-111191:-1:exon
so has part: feature:109570-109689:-1:exon
so has part: feature:107597-107708:-1:exon
so has part: feature:106531-106619:-1:exon
so has part: feature:106027-106117:-1:exon
so has part: feature:105325-105452:-1:exon
so has part: feature:104450-104553:-1:exon
so has part: feature:103340-103421:-1:exon
so has part: feature:102523-102599:-1:exon
so has part: feature:101981-102234:-1:exon
so has part: feature:101087-101157:-1:exon
so has part: feature:99791-99916:-1:exon
so has part: feature:99246-99350:-1:exon
so has part: feature:98209-98277:-1:exon
so has part: feature:97565-97643:-1:exon
so has part: feature:96571-96701:-1:exon
so has part: feature:94927-95079:-1:exon
so has part: feature:93456-93656:-1:exon
so has part: feature:92241-92355:-1:exon
so has part: feature:91639-91811:-1:exon
so has part: feature:91108-91236:-1:exon

XP_041568648.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:111299-111393:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:111110-111191:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:109570-109689:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:107597-107708:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:106531-106619:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:106027-106117:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:105325-105452:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:104450-104553:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:103340-103421:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:102523-102599:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:101981-102234:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:101087-101157:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:99791-99916:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:99246-99350:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:98209-98277:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:97565-97643:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:96571-96701:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:94927-95079:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:93456-93656:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:92241-92355:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:91639-91811:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:91108-91236:-1:exon

VARS2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: VARS2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: valine--tRNA ligase, mitochondrial isoform X2
translation: MSRCPQCPQGSPRVTRGPQGSPGVTKGPQGCPRGVTWSCALRSALADVEVEPRVLTGPTALSVPNCPHPVTFGLLVTFAYPVEGDDELEVPVATTRPETLFGDVAVAVHPQDPRYLHLQGRQVRHPFSGALLPVVGDPNVQPQRGTGAVKVTPGHSPQDLALARAHALPLLSVIADDGTLRPPGGGWLQGVPRFEARDRVVAALAQRGLLRGVQDHAMTLPLCSRSGDVVEFLLKRQWFLSCGDMARAALQAVTSGRLRLVPEFHEKNWRTWMENAGDWCLSRQLWWGHQVPAFQVTGGPRGAPGDPGGAPGGPLGAPGGPLGAPGDPQEGPWFVGRSEAEARAAAAAALGCPPQELHLQQDPDVLDTWFSSALFPFAALGWPEQSPDLRRFYPTSLLVTGSDLLFFWVARMVMLGQQLTGQLPFRQVLLHALVRDPQGRKMSKSLGNVIDPRDVIGGASLQELQEKLRTRTLDPRELQAAQEGQRRQFPQGIPECGADALRLALCTHDAHGPEIRLGVASVLTQRRFCNKVWNAVGFVLGALQGQGGPPKPPEEVVPAAPLDRWLLARLAAAGAEVGARLGALEVQGAVGAVQSFWLRCLCDVYLEVAKVSLRSPQLRPGAVLTLAAAADLGLRLLSPFAPFLAEELWQRLPRAPHAPPSISLAPFPEPRRLAHWRSPELEAQVAAMLELVRTARGLRQTLRLGGAARPPVLVQCPEADRDWLEPLGPAFQALSRAGPVRFLPPGAEPGPGWAGAAAPSGTFVHLRAQSPAGAEPGGAGDPRDPPGTPQGPPQGPLRDPPRSGGAGLVNE
SIO_010081: VARS2
subclass of: SO_0000673
so part of: VARS2
location: complement(join(91108..91236,91639..91811,92241..92355,93456..93656,94927..95079,96571..96701,97565..97643,98209..98277,99246..99350,99791..99916,101087..101157,101981..102234,102523..102599,103340..103421,104450..104553,105325..105452,106027..106117,106531..106619,107597..107708,108388..108534))
location: region:91108-108534:-1
so has part: feature:108388-108534:-1:exon
so has part: feature:107597-107708:-1:exon
so has part: feature:106531-106619:-1:exon
so has part: feature:106027-106117:-1:exon
so has part: feature:105325-105452:-1:exon
so has part: feature:104450-104553:-1:exon
so has part: feature:103340-103421:-1:exon
so has part: feature:102523-102599:-1:exon
so has part: feature:101981-102234:-1:exon
so has part: feature:101087-101157:-1:exon
so has part: feature:99791-99916:-1:exon
so has part: feature:99246-99350:-1:exon
so has part: feature:98209-98277:-1:exon
so has part: feature:97565-97643:-1:exon
so has part: feature:96571-96701:-1:exon
so has part: feature:94927-95079:-1:exon
so has part: feature:93456-93656:-1:exon
so has part: feature:92241-92355:-1:exon
so has part: feature:91639-91811:-1:exon
so has part: feature:91108-91236:-1:exon

XP_041568649.1
type: Protein
SIO_000068: ncbiprotein

position:108534:-1
position: 108534
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:108388-108534:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:107597-107708:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:106531-106619:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:106027-106117:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:105325-105452:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:104450-104553:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:103340-103421:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:102523-102599:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:101981-102234:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:101087-101157:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:99791-99916:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:99246-99350:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:98209-98277:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:97565-97643:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:96571-96701:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:94927-95079:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:93456-93656:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:92241-92355:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:91639-91811:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:91108-91236:-1:exon

DHX16
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: DHX16
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 113517..139365
location: region:113517-139365:1
so has part: feature:113517-139365:1:exon
subclass of: SO_0000010

115492235
type: Gene
SIO_000068: ncbigene

position:113517:1
position: 113517
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:139365:1
position: 139365
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:113517-139365:1:exon

DHX16
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: DHX16
product: DEAH-box helicase 16, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 ESTs, 33 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 14 samples with support for all annotated introns
transcript id: XM_041712704.1
SIO_010081: DHX16
subclass of: SO_0000673
so part of: DHX16
location: join(113517..113759,114297..114538,117024..117171,118110..118166,119432..119686,123863..124081,126596..126784,127688..127798,128762..128877,130013..130223,131658..131756,132564..132716,133180..133320,134266..134428,135317..135435,135741..135808,136522..136684,137576..137737,138689..138862,139136..139365)
location: region:113517-139365:1
so has part: feature:113517-113759:1:exon
so has part: feature:114297-114538:1:exon
so has part: feature:117024-117171:1:exon
so has part: feature:118110-118166:1:exon
so has part: feature:119432-119686:1:exon
so has part: feature:123863-124081:1:exon
so has part: feature:126596-126784:1:exon
so has part: feature:127688-127798:1:exon
so has part: feature:128762-128877:1:exon
so has part: feature:130013-130223:1:exon
so has part: feature:131658-131756:1:exon
so has part: feature:132564-132716:1:exon
so has part: feature:133180-133320:1:exon
so has part: feature:134266-134428:1:exon
so has part: feature:135317-135435:1:exon
so has part: feature:135741-135808:1:exon
so has part: feature:136522-136684:1:exon
so has part: feature:137576-137737:1:exon
so has part: feature:138689-138862:1:exon
so has part: feature:139136-139365:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:113517-113759:1:exon

position:113759:1
position: 113759
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:114297-114538:1:exon

position:114297:1
position: 114297
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:114538:1
position: 114538
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:117024-117171:1:exon

position:117024:1
position: 117024
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:117171:1
position: 117171
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:118110-118166:1:exon

position:118110:1
position: 118110
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:118166:1
position: 118166
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:119432-119686:1:exon

position:119432:1
position: 119432
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:119686:1
position: 119686
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:123863-124081:1:exon

position:123863:1
position: 123863
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:124081:1
position: 124081
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:126596-126784:1:exon

position:126596:1
position: 126596
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:126784:1
position: 126784
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:127688-127798:1:exon

position:127688:1
position: 127688
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:127798:1
position: 127798
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:128762-128877:1:exon

position:128762:1
position: 128762
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:128877:1
position: 128877
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:130013-130223:1:exon

position:130013:1
position: 130013
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:130223:1
position: 130223
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:131658-131756:1:exon

position:131658:1
position: 131658
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:131756:1
position: 131756
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:132564-132716:1:exon

position:132564:1
position: 132564
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:132716:1
position: 132716
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:133180-133320:1:exon

position:133180:1
position: 133180
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:133320:1
position: 133320
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:134266-134428:1:exon

position:134266:1
position: 134266
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:134428:1
position: 134428
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:135317-135435:1:exon

position:135317:1
position: 135317
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:135435:1
position: 135435
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:135741-135808:1:exon

position:135741:1
position: 135741
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:135808:1
position: 135808
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:136522-136684:1:exon

position:136522:1
position: 136522
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:136684:1
position: 136684
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:137576-137737:1:exon

position:137576:1
position: 137576
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:137737:1
position: 137737
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:138689-138862:1:exon

position:138689:1
position: 138689
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:138862:1
position: 138862
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:139136-139365:1:exon

position:139136:1
position: 139136
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

DHX16
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: DHX16
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 isoform X1
translation: MAAMAALERWVSGQLQELLGLSGRHVPAFLVALARRSRSLEELLERLRETEALRVEEPRVREFARQLWDKVPREAPREPPGRAAERAALELQRQNRGYRLVESDEEEEGPGPAHHGHAQEEPRPHRRHLRRRRRSESPPEAPPETAPATPPAAEPPEEPEEEWEASERERLRDLRERDAFAERLRRRDRQRDRGARGDSKAYEEAQKRLKVAEEDQKALIPELRKRSRREYLAKREREKLEELEQEIQDEELLFGEEALTAAERRELRYKRRLRDLARDYKRAGAQEELERSSRYHIPQETRDKKIPEREEAQEEALAPRDEQRRWEEQLLGAAALRFGARDAARHQRHPEYPLLLEEEEMVQFVSAARLEGTDPQKDVPEAVPEAERRRQSLQDARRALPIFPFREELLAAVGQHQVLVIEGETGSGKTTQIPQYLHEEGYTRAGMKIGVTQPRRVAAMSVAARVAVEMGTKLGNEVGYSIRFEDCTSERTVLKYMTDGMLLREFLTEPDLASYSVIMVDEAHERTLHTDVLFGLIKDIARFRPQLKVLVASATMDTERFSAFFDHAPVFRIPGRRFPVDIYYTKAPEADYLEACVVSVLQIHVTQPPGDILVFLTGQEEIEACVELLQERCRRLGSRLPELLVLPIYANLPSELQARIFQPTPPGARKVVVATNIAETSVTIDGIVYVLDPGFCKQKSYSARTGMESLVVTPCSRASANQRAGRAGRVAPGKCFRLYTAWAFQHELEETAVPEIQRADLGALVLLLKSLGINDLIHFDFLDPPPHETLVLALEQLYALGALNHLGELTTLGRRMAELPVEPMLAKMILASEQYGCTEEVLTVAAMLSVNNAVFYRPKDKVLHADSARVAFGVPGGDHLVLLNVYNQWVASGHSLQWCYEHFVQARSLRRARDVREQLQGLMERVEIAPSSCGGNLDLVRKAITAGFFYHTARLARGGYRTVKHQQPVFIHPNSALFALQPRWVLYHELVCTSKEFMRQVLEIDSSWLLEVAPHYYQAKELEDGSGRKMPKKAGKSREELG
SIO_010081: DHX16
subclass of: SO_0000673
so part of: DHX16
location: join(113550..113759,114297..114538,117024..117171,118110..118166,119432..119686,123863..124081,126596..126784,127688..127798,128762..128877,130013..130223,131658..131756,132564..132716,133180..133320,134266..134428,135317..135435,135741..135808,136522..136684,137576..137737,138689..138862,139136..139264)
location: region:113550-139264:1
so has part: feature:113550-113759:1:exon
so has part: feature:114297-114538:1:exon
so has part: feature:117024-117171:1:exon
so has part: feature:118110-118166:1:exon
so has part: feature:119432-119686:1:exon
so has part: feature:123863-124081:1:exon
so has part: feature:126596-126784:1:exon
so has part: feature:127688-127798:1:exon
so has part: feature:128762-128877:1:exon
so has part: feature:130013-130223:1:exon
so has part: feature:131658-131756:1:exon
so has part: feature:132564-132716:1:exon
so has part: feature:133180-133320:1:exon
so has part: feature:134266-134428:1:exon
so has part: feature:135317-135435:1:exon
so has part: feature:135741-135808:1:exon
so has part: feature:136522-136684:1:exon
so has part: feature:137576-137737:1:exon
so has part: feature:138689-138862:1:exon
so has part: feature:139136-139264:1:exon

XP_041568638.1
type: Protein
SIO_000068: ncbiprotein

position:113550:1
position: 113550
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:139264:1
position: 139264
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
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urn:…
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urn:…
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urn:…
SIO_000300: 4
SIO_000628: feature:118110-118166:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:119432-119686:1:exon

urn:…
SIO_000300: 6
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urn:…
SIO_000300: 7
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urn:…
SIO_000300: 8
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urn:…
SIO_000300: 9
SIO_000628: feature:128762-128877:1:exon

urn:…
SIO_000300: 10
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urn:…
SIO_000300: 11
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urn:…
SIO_000300: 12
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urn:…
SIO_000300: 13
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urn:…
SIO_000300: 14
SIO_000628: feature:134266-134428:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:135317-135435:1:exon

urn:…
SIO_000300: 16
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urn:…
SIO_000300: 17
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urn:…
SIO_000300: 18
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urn:…
SIO_000300: 19
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urn:…
SIO_000300: 20
SIO_000628: feature:139136-139264:1:exon

DHX16
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: DHX16
product: DEAH-box helicase 16, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 ESTs, 31 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
transcript id: XM_041712706.1
SIO_010081: DHX16
subclass of: SO_0000673
so part of: DHX16
location: join(119751..119790,123863..124081,126596..126784,127688..127798,128762..128877,130013..130223,131658..131756,132564..132716,133180..133320,134266..134428,135317..135435,135741..135808,136522..136684,137576..137737,138689..138862,139136..139365)
location: region:119751-139365:1
so has part: feature:119751-119790:1:exon
so has part: feature:123863-124081:1:exon
so has part: feature:126596-126784:1:exon
so has part: feature:127688-127798:1:exon
so has part: feature:128762-128877:1:exon
so has part: feature:130013-130223:1:exon
so has part: feature:131658-131756:1:exon
so has part: feature:132564-132716:1:exon
so has part: feature:133180-133320:1:exon
so has part: feature:134266-134428:1:exon
so has part: feature:135317-135435:1:exon
so has part: feature:135741-135808:1:exon
so has part: feature:136522-136684:1:exon
so has part: feature:137576-137737:1:exon
so has part: feature:138689-138862:1:exon
so has part: feature:139136-139365:1:exon

position:119751:1
position: 119751
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:119751-119790:1:exon

position:119790:1
position: 119790
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
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urn:…
SIO_000300: 3
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SIO_000300: 6
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SIO_000300: 11
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urn:…
SIO_000300: 12
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SIO_000300: 14
SIO_000628: feature:137576-137737:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:138689-138862:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:139136-139365:1:exon

DHX16
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: DHX16
product: DEAH-box helicase 16, transcript variant X5
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 ESTs, 31 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns
transcript id: XM_041712707.1
SIO_010081: DHX16
subclass of: SO_0000673
so part of: DHX16
location: join(119844..119916,123863..124081,126596..126784,127688..127798,128762..128877,130013..130223,131658..131756,132564..132716,133180..133320,134266..134428,135317..135435,135741..135808,136522..136684,137576..137737,138689..138862,139136..139365)
location: region:119844-139365:1
so has part: feature:119844-119916:1:exon
so has part: feature:123863-124081:1:exon
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so has part: feature:128762-128877:1:exon
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so has part: feature:136522-136684:1:exon
so has part: feature:137576-137737:1:exon
so has part: feature:138689-138862:1:exon
so has part: feature:139136-139365:1:exon

position:119844:1
position: 119844
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:119844-119916:1:exon

position:119916:1
position: 119916
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
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urn:…
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SIO_000628: feature:138689-138862:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:139136-139365:1:exon

DHX16
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: DHX16
product: DEAH-box helicase 16, transcript variant X10
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 ESTs, 31 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 13 samples with support for all annotated introns
transcript id: XM_041712712.1
SIO_010081: DHX16
subclass of: SO_0000673
so part of: DHX16
location: join(120514..120604,123863..124081,126596..126784,127688..127798,128762..128877,130013..130223,131658..131756,132564..132716,133180..133320,134266..134428,135317..135435,135741..135808,136522..136684,137576..137737,138689..138862,139136..139365)
location: region:120514-139365:1
so has part: feature:120514-120604:1:exon
so has part: feature:123863-124081:1:exon
so has part: feature:126596-126784:1:exon
so has part: feature:127688-127798:1:exon
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so has part: feature:137576-137737:1:exon
so has part: feature:138689-138862:1:exon
so has part: feature:139136-139365:1:exon

position:120514:1
position: 120514
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:120514-120604:1:exon

position:120604:1
position: 120604
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
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urn:…
SIO_000300: 16
SIO_000628: feature:139136-139365:1:exon

DHX16
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: DHX16
product: DEAH-box helicase 16, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 ESTs, 31 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns
transcript id: XM_032746211.2
SIO_010081: DHX16
subclass of: SO_0000673
so part of: DHX16
location: join(120987..121070,123863..124081,126596..126784,127688..127798,128762..128877,130013..130223,131658..131756,132564..132716,133180..133320,134266..134428,135317..135435,135741..135808,136522..136684,137576..137737,138689..138862,139136..139365)
location: region:120987-139365:1
so has part: feature:120987-121070:1:exon
so has part: feature:123863-124081:1:exon
so has part: feature:126596-126784:1:exon
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so has part: feature:128762-128877:1:exon
so has part: feature:130013-130223:1:exon
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so has part: feature:137576-137737:1:exon
so has part: feature:138689-138862:1:exon
so has part: feature:139136-139365:1:exon

position:120987:1
position: 120987
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:120987-121070:1:exon

position:121070:1
position: 121070
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
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SIO_000300: 3
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urn:…
SIO_000300: 16
SIO_000628: feature:139136-139365:1:exon

DHX16
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: DHX16
product: DEAH-box helicase 16, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 ESTs, 31 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 13 samples with support for all annotated introns
transcript id: XM_041712705.1
SIO_010081: DHX16
subclass of: SO_0000673
so part of: DHX16
location: join(121110..121173,123863..124081,126596..126784,127688..127798,128762..128877,130013..130223,131658..131756,132564..132716,133180..133320,134266..134428,135317..135435,135741..135808,136522..136684,137576..137737,138689..138862,139136..139365)
location: region:121110-139365:1
so has part: feature:121110-121173:1:exon
so has part: feature:123863-124081:1:exon
so has part: feature:126596-126784:1:exon
so has part: feature:127688-127798:1:exon
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so has part: feature:130013-130223:1:exon
so has part: feature:131658-131756:1:exon
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so has part: feature:135741-135808:1:exon
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so has part: feature:137576-137737:1:exon
so has part: feature:138689-138862:1:exon
so has part: feature:139136-139365:1:exon

position:121110:1
position: 121110
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:121110-121173:1:exon

position:121173:1
position: 121173
reference: sequence
type: ForwardStrandPosition
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urn:…
SIO_000300: 2
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SIO_000300: 3
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urn:…
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SIO_000628: feature:139136-139365:1:exon

DHX16
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: DHX16
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 isoform X2
translation: MVQFVSAARLEGTDPQKDVPEAVPEAERRRQSLQDARRALPIFPFREELLAAVGQHQVLVIEGETGSGKTTQIPQYLHEEGYTRAGMKIGVTQPRRVAAMSVAARVAVEMGTKLGNEVGYSIRFEDCTSERTVLKYMTDGMLLREFLTEPDLASYSVIMVDEAHERTLHTDVLFGLIKDIARFRPQLKVLVASATMDTERFSAFFDHAPVFRIPGRRFPVDIYYTKAPEADYLEACVVSVLQIHVTQPPGDILVFLTGQEEIEACVELLQERCRRLGSRLPELLVLPIYANLPSELQARIFQPTPPGARKVVVATNIAETSVTIDGIVYVLDPGFCKQKSYSARTGMESLVVTPCSRASANQRAGRAGRVAPGKCFRLYTAWAFQHELEETAVPEIQRADLGALVLLLKSLGINDLIHFDFLDPPPHETLVLALEQLYALGALNHLGELTTLGRRMAELPVEPMLAKMILASEQYGCTEEVLTVAAMLSVNNAVFYRPKDKVLHADSARVAFGVPGGDHLVLLNVYNQWVASGHSLQWCYEHFVQARSLRRARDVREQLQGLMERVEIAPSSCGGNLDLVRKAITAGFFYHTARLARGGYRTVKHQQPVFIHPNSALFALQPRWVLYHELVCTSKEFMRQVLEIDSSWLLEVAPHYYQAKELEDGSGRKMPKKAGKSREELG
SIO_010081: DHX16
subclass of: SO_0000673
so part of: DHX16
location: join(124031..124081,126596..126784,127688..127798,128762..128877,130013..130223,131658..131756,132564..132716,133180..133320,134266..134428,135317..135435,135741..135808,136522..136684,137576..137737,138689..138862,139136..139264)
location: region:124031-139264:1
so has part: feature:124031-124081:1:exon
so has part: feature:126596-126784:1:exon
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so has part: feature:128762-128877:1:exon
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so has part: feature:137576-137737:1:exon
so has part: feature:138689-138862:1:exon
so has part: feature:139136-139264:1:exon

XP_041568639.1
type: Protein
SIO_000068: ncbiprotein

position:124031:1
position: 124031
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:124031-124081:1:exon

urn:…
SIO_000300: 2
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SIO_000300: 3
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urn:…
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urn:…
SIO_000300: 9
SIO_000628: feature:134266-134428:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:135317-135435:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:135741-135808:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:136522-136684:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:137576-137737:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:138689-138862:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:139136-139264:1:exon

DHX16
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: DHX16
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 isoform X2
translation: MVQFVSAARLEGTDPQKDVPEAVPEAERRRQSLQDARRALPIFPFREELLAAVGQHQVLVIEGETGSGKTTQIPQYLHEEGYTRAGMKIGVTQPRRVAAMSVAARVAVEMGTKLGNEVGYSIRFEDCTSERTVLKYMTDGMLLREFLTEPDLASYSVIMVDEAHERTLHTDVLFGLIKDIARFRPQLKVLVASATMDTERFSAFFDHAPVFRIPGRRFPVDIYYTKAPEADYLEACVVSVLQIHVTQPPGDILVFLTGQEEIEACVELLQERCRRLGSRLPELLVLPIYANLPSELQARIFQPTPPGARKVVVATNIAETSVTIDGIVYVLDPGFCKQKSYSARTGMESLVVTPCSRASANQRAGRAGRVAPGKCFRLYTAWAFQHELEETAVPEIQRADLGALVLLLKSLGINDLIHFDFLDPPPHETLVLALEQLYALGALNHLGELTTLGRRMAELPVEPMLAKMILASEQYGCTEEVLTVAAMLSVNNAVFYRPKDKVLHADSARVAFGVPGGDHLVLLNVYNQWVASGHSLQWCYEHFVQARSLRRARDVREQLQGLMERVEIAPSSCGGNLDLVRKAITAGFFYHTARLARGGYRTVKHQQPVFIHPNSALFALQPRWVLYHELVCTSKEFMRQVLEIDSSWLLEVAPHYYQAKELEDGSGRKMPKKAGKSREELG
SIO_010081: DHX16
subclass of: SO_0000673
so part of: DHX16
location: join(124031..124081,126596..126784,127688..127798,128762..128877,130013..130223,131658..131756,132564..132716,133180..133320,134266..134428,135317..135435,135741..135808,136522..136684,137576..137737,138689..138862,139136..139264)
location: region:124031-139264:1
so has part: feature:124031-124081:1:exon
so has part: feature:126596-126784:1:exon
so has part: feature:127688-127798:1:exon
so has part: feature:128762-128877:1:exon
so has part: feature:130013-130223:1:exon
so has part: feature:131658-131756:1:exon
so has part: feature:132564-132716:1:exon
so has part: feature:133180-133320:1:exon
so has part: feature:134266-134428:1:exon
so has part: feature:135317-135435:1:exon
so has part: feature:135741-135808:1:exon
so has part: feature:136522-136684:1:exon
so has part: feature:137576-137737:1:exon
so has part: feature:138689-138862:1:exon
so has part: feature:139136-139264:1:exon

XP_032602102.2
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:124031-124081:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:126596-126784:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:127688-127798:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:128762-128877:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:130013-130223:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:131658-131756:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:132564-132716:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:133180-133320:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:134266-134428:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:135317-135435:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:135741-135808:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:136522-136684:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:137576-137737:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:138689-138862:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:139136-139264:1:exon

DHX16
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: DHX16
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 isoform X2
translation: MVQFVSAARLEGTDPQKDVPEAVPEAERRRQSLQDARRALPIFPFREELLAAVGQHQVLVIEGETGSGKTTQIPQYLHEEGYTRAGMKIGVTQPRRVAAMSVAARVAVEMGTKLGNEVGYSIRFEDCTSERTVLKYMTDGMLLREFLTEPDLASYSVIMVDEAHERTLHTDVLFGLIKDIARFRPQLKVLVASATMDTERFSAFFDHAPVFRIPGRRFPVDIYYTKAPEADYLEACVVSVLQIHVTQPPGDILVFLTGQEEIEACVELLQERCRRLGSRLPELLVLPIYANLPSELQARIFQPTPPGARKVVVATNIAETSVTIDGIVYVLDPGFCKQKSYSARTGMESLVVTPCSRASANQRAGRAGRVAPGKCFRLYTAWAFQHELEETAVPEIQRADLGALVLLLKSLGINDLIHFDFLDPPPHETLVLALEQLYALGALNHLGELTTLGRRMAELPVEPMLAKMILASEQYGCTEEVLTVAAMLSVNNAVFYRPKDKVLHADSARVAFGVPGGDHLVLLNVYNQWVASGHSLQWCYEHFVQARSLRRARDVREQLQGLMERVEIAPSSCGGNLDLVRKAITAGFFYHTARLARGGYRTVKHQQPVFIHPNSALFALQPRWVLYHELVCTSKEFMRQVLEIDSSWLLEVAPHYYQAKELEDGSGRKMPKKAGKSREELG
SIO_010081: DHX16
subclass of: SO_0000673
so part of: DHX16
location: join(124031..124081,126596..126784,127688..127798,128762..128877,130013..130223,131658..131756,132564..132716,133180..133320,134266..134428,135317..135435,135741..135808,136522..136684,137576..137737,138689..138862,139136..139264)
location: region:124031-139264:1
so has part: feature:124031-124081:1:exon
so has part: feature:126596-126784:1:exon
so has part: feature:127688-127798:1:exon
so has part: feature:128762-128877:1:exon
so has part: feature:130013-130223:1:exon
so has part: feature:131658-131756:1:exon
so has part: feature:132564-132716:1:exon
so has part: feature:133180-133320:1:exon
so has part: feature:134266-134428:1:exon
so has part: feature:135317-135435:1:exon
so has part: feature:135741-135808:1:exon
so has part: feature:136522-136684:1:exon
so has part: feature:137576-137737:1:exon
so has part: feature:138689-138862:1:exon
so has part: feature:139136-139264:1:exon

XP_041568640.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:124031-124081:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:126596-126784:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:127688-127798:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:128762-128877:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:130013-130223:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:131658-131756:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:132564-132716:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:133180-133320:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:134266-134428:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:135317-135435:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:135741-135808:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:136522-136684:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:137576-137737:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:138689-138862:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:139136-139264:1:exon

DHX16
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: DHX16
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 isoform X2
translation: MVQFVSAARLEGTDPQKDVPEAVPEAERRRQSLQDARRALPIFPFREELLAAVGQHQVLVIEGETGSGKTTQIPQYLHEEGYTRAGMKIGVTQPRRVAAMSVAARVAVEMGTKLGNEVGYSIRFEDCTSERTVLKYMTDGMLLREFLTEPDLASYSVIMVDEAHERTLHTDVLFGLIKDIARFRPQLKVLVASATMDTERFSAFFDHAPVFRIPGRRFPVDIYYTKAPEADYLEACVVSVLQIHVTQPPGDILVFLTGQEEIEACVELLQERCRRLGSRLPELLVLPIYANLPSELQARIFQPTPPGARKVVVATNIAETSVTIDGIVYVLDPGFCKQKSYSARTGMESLVVTPCSRASANQRAGRAGRVAPGKCFRLYTAWAFQHELEETAVPEIQRADLGALVLLLKSLGINDLIHFDFLDPPPHETLVLALEQLYALGALNHLGELTTLGRRMAELPVEPMLAKMILASEQYGCTEEVLTVAAMLSVNNAVFYRPKDKVLHADSARVAFGVPGGDHLVLLNVYNQWVASGHSLQWCYEHFVQARSLRRARDVREQLQGLMERVEIAPSSCGGNLDLVRKAITAGFFYHTARLARGGYRTVKHQQPVFIHPNSALFALQPRWVLYHELVCTSKEFMRQVLEIDSSWLLEVAPHYYQAKELEDGSGRKMPKKAGKSREELG
SIO_010081: DHX16
subclass of: SO_0000673
so part of: DHX16
location: join(124031..124081,126596..126784,127688..127798,128762..128877,130013..130223,131658..131756,132564..132716,133180..133320,134266..134428,135317..135435,135741..135808,136522..136684,137576..137737,138689..138862,139136..139264)
location: region:124031-139264:1
so has part: feature:124031-124081:1:exon
so has part: feature:126596-126784:1:exon
so has part: feature:127688-127798:1:exon
so has part: feature:128762-128877:1:exon
so has part: feature:130013-130223:1:exon
so has part: feature:131658-131756:1:exon
so has part: feature:132564-132716:1:exon
so has part: feature:133180-133320:1:exon
so has part: feature:134266-134428:1:exon
so has part: feature:135317-135435:1:exon
so has part: feature:135741-135808:1:exon
so has part: feature:136522-136684:1:exon
so has part: feature:137576-137737:1:exon
so has part: feature:138689-138862:1:exon
so has part: feature:139136-139264:1:exon

XP_041568641.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:124031-124081:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:126596-126784:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:127688-127798:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:128762-128877:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:130013-130223:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:131658-131756:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:132564-132716:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:133180-133320:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:134266-134428:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:135317-135435:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:135741-135808:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:136522-136684:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:137576-137737:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:138689-138862:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:139136-139264:1:exon

DHX16
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: DHX16
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 isoform X2
translation: MVQFVSAARLEGTDPQKDVPEAVPEAERRRQSLQDARRALPIFPFREELLAAVGQHQVLVIEGETGSGKTTQIPQYLHEEGYTRAGMKIGVTQPRRVAAMSVAARVAVEMGTKLGNEVGYSIRFEDCTSERTVLKYMTDGMLLREFLTEPDLASYSVIMVDEAHERTLHTDVLFGLIKDIARFRPQLKVLVASATMDTERFSAFFDHAPVFRIPGRRFPVDIYYTKAPEADYLEACVVSVLQIHVTQPPGDILVFLTGQEEIEACVELLQERCRRLGSRLPELLVLPIYANLPSELQARIFQPTPPGARKVVVATNIAETSVTIDGIVYVLDPGFCKQKSYSARTGMESLVVTPCSRASANQRAGRAGRVAPGKCFRLYTAWAFQHELEETAVPEIQRADLGALVLLLKSLGINDLIHFDFLDPPPHETLVLALEQLYALGALNHLGELTTLGRRMAELPVEPMLAKMILASEQYGCTEEVLTVAAMLSVNNAVFYRPKDKVLHADSARVAFGVPGGDHLVLLNVYNQWVASGHSLQWCYEHFVQARSLRRARDVREQLQGLMERVEIAPSSCGGNLDLVRKAITAGFFYHTARLARGGYRTVKHQQPVFIHPNSALFALQPRWVLYHELVCTSKEFMRQVLEIDSSWLLEVAPHYYQAKELEDGSGRKMPKKAGKSREELG
SIO_010081: DHX16
subclass of: SO_0000673
so part of: DHX16
location: join(124031..124081,126596..126784,127688..127798,128762..128877,130013..130223,131658..131756,132564..132716,133180..133320,134266..134428,135317..135435,135741..135808,136522..136684,137576..137737,138689..138862,139136..139264)
location: region:124031-139264:1
so has part: feature:124031-124081:1:exon
so has part: feature:126596-126784:1:exon
so has part: feature:127688-127798:1:exon
so has part: feature:128762-128877:1:exon
so has part: feature:130013-130223:1:exon
so has part: feature:131658-131756:1:exon
so has part: feature:132564-132716:1:exon
so has part: feature:133180-133320:1:exon
so has part: feature:134266-134428:1:exon
so has part: feature:135317-135435:1:exon
so has part: feature:135741-135808:1:exon
so has part: feature:136522-136684:1:exon
so has part: feature:137576-137737:1:exon
so has part: feature:138689-138862:1:exon
so has part: feature:139136-139264:1:exon

XP_041568646.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:124031-124081:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:126596-126784:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:127688-127798:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:128762-128877:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:130013-130223:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:131658-131756:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:132564-132716:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:133180-133320:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:134266-134428:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:135317-135435:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:135741-135808:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:136522-136684:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:137576-137737:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:138689-138862:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:139136-139264:1:exon

DHX16
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: DHX16
product: DEAH-box helicase 16, transcript variant X6
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 ESTs, 31 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 36 samples with support for all annotated introns
transcript id: XM_041712708.1
SIO_010081: DHX16
subclass of: SO_0000673
so part of: DHX16
location: join(124342..124406,126596..126784,127688..127798,128762..128877,130013..130223,131658..131756,132564..132716,133180..133320,134266..134428,135317..135435,135741..135808,136522..136684,137576..137737,138689..138862,139136..139365)
location: region:124342-139365:1
so has part: feature:124342-124406:1:exon
so has part: feature:126596-126784:1:exon
so has part: feature:127688-127798:1:exon
so has part: feature:128762-128877:1:exon
so has part: feature:130013-130223:1:exon
so has part: feature:131658-131756:1:exon
so has part: feature:132564-132716:1:exon
so has part: feature:133180-133320:1:exon
so has part: feature:134266-134428:1:exon
so has part: feature:135317-135435:1:exon
so has part: feature:135741-135808:1:exon
so has part: feature:136522-136684:1:exon
so has part: feature:137576-137737:1:exon
so has part: feature:138689-138862:1:exon
so has part: feature:139136-139365:1:exon

position:124342:1
position: 124342
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:124342-124406:1:exon

position:124406:1
position: 124406
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:126596-126784:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:127688-127798:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:128762-128877:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:130013-130223:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:131658-131756:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:132564-132716:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:133180-133320:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:134266-134428:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:135317-135435:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:135741-135808:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:136522-136684:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:137576-137737:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:138689-138862:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:139136-139365:1:exon

DHX16
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: DHX16
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 isoform X3
translation: MVQFVSAARLEGTDPQKDVPEAVPEAERRRQSLQDARRALPIFPFREELLAAVGQHQVLVIEGETGSGKTTQIPQYLHEEGYTRAGMKIGVTQPRRVAAMSVAARVAVEMGTKLGNEVGYSIRFEDCTSERTVLKYMTDGMLLREFLTEPDLASYSVIMVDEAHERTLHTDVLFGLIKDIARFRPQLKVLVASATMDTERFSAFFDHAPVFRIPGRRFPVDIYYTKAPEADYLEACVVSVLQIHVTQPPGDILVFLTGQEEIEACVELLQERCRRLGSRLPELLVLPIYANLPSELQARIFQPTPPGARKVVVATNIAETSVTIDGIVYVLDPGFCKQKSYSARTGMESLVVTPCSRASANQRAGRAGRVAPGKCFRLYTAWAFQHELEETAVPEIQRADLGALVLLLKSLGINDLIHFDFLDPPPHETLVLALEQLYALGALNHLGELTTLGRRMAELPVEPMLAKMILASEQYGCTEEVLTVAAMLSVNNAVFYRPKDKVLHADSARVAFGVPGGDHLVLLNVYNQWVASGHSLQWCYEHFVQARSLRRARDVREQLQGLMERVEIAPSSCGGNLDLVRKAITAGFFYHTARLARGGYRTVKHQQPVFIHPNSALFALQPRWVLYHELVCTSKEFMRQVLEIDSSWLLEVAPHYYQAKELEDGSGRKMPKKAGKSREELG
SIO_010081: DHX16
subclass of: SO_0000673
so part of: DHX16
location: join(124356..124406,126596..126784,127688..127798,128762..128877,130013..130223,131658..131756,132564..132716,133180..133320,134266..134428,135317..135435,135741..135808,136522..136684,137576..137737,138689..138862,139136..139264)
location: region:124356-139264:1
so has part: feature:124356-124406:1:exon
so has part: feature:126596-126784:1:exon
so has part: feature:127688-127798:1:exon
so has part: feature:128762-128877:1:exon
so has part: feature:130013-130223:1:exon
so has part: feature:131658-131756:1:exon
so has part: feature:132564-132716:1:exon
so has part: feature:133180-133320:1:exon
so has part: feature:134266-134428:1:exon
so has part: feature:135317-135435:1:exon
so has part: feature:135741-135808:1:exon
so has part: feature:136522-136684:1:exon
so has part: feature:137576-137737:1:exon
so has part: feature:138689-138862:1:exon
so has part: feature:139136-139264:1:exon

XP_041568642.1
type: Protein
SIO_000068: ncbiprotein

position:124356:1
position: 124356
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:124356-124406:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:126596-126784:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:127688-127798:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:128762-128877:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:130013-130223:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:131658-131756:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:132564-132716:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:133180-133320:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:134266-134428:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:135317-135435:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:135741-135808:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:136522-136684:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:137576-137737:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:138689-138862:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:139136-139264:1:exon

DHX16
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: DHX16
product: DEAH-box helicase 16, transcript variant X9
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 ESTs, 31 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
transcript id: XM_041712711.1
SIO_010081: DHX16
subclass of: SO_0000673
so part of: DHX16
location: join(124557..124621,126596..126784,127688..127798,128762..128877,130013..130223,131658..131756,132564..132716,133180..133320,134266..134428,135317..135435,135741..135808,136522..136684,137576..137737,138689..138862,139136..139365)
location: region:124557-139365:1
so has part: feature:124557-124621:1:exon
so has part: feature:126596-126784:1:exon
so has part: feature:127688-127798:1:exon
so has part: feature:128762-128877:1:exon
so has part: feature:130013-130223:1:exon
so has part: feature:131658-131756:1:exon
so has part: feature:132564-132716:1:exon
so has part: feature:133180-133320:1:exon
so has part: feature:134266-134428:1:exon
so has part: feature:135317-135435:1:exon
so has part: feature:135741-135808:1:exon
so has part: feature:136522-136684:1:exon
so has part: feature:137576-137737:1:exon
so has part: feature:138689-138862:1:exon
so has part: feature:139136-139365:1:exon

position:124557:1
position: 124557
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:124557-124621:1:exon

position:124621:1
position: 124621
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:126596-126784:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:127688-127798:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:128762-128877:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:130013-130223:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:131658-131756:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:132564-132716:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:133180-133320:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:134266-134428:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:135317-135435:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:135741-135808:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:136522-136684:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:137576-137737:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:138689-138862:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:139136-139365:1:exon

DHX16
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: DHX16
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 isoform X6
translation: MVQFVSAAHLEGTDPQKDVPEAVPEAERRRQSLQDARRALPIFPFREELLAAVGQHQVLVIEGETGSGKTTQIPQYLHEEGYTRAGMKIGVTQPRRVAAMSVAARVAVEMGTKLGNEVGYSIRFEDCTSERTVLKYMTDGMLLREFLTEPDLASYSVIMVDEAHERTLHTDVLFGLIKDIARFRPQLKVLVASATMDTERFSAFFDHAPVFRIPGRRFPVDIYYTKAPEADYLEACVVSVLQIHVTQPPGDILVFLTGQEEIEACVELLQERCRRLGSRLPELLVLPIYANLPSELQARIFQPTPPGARKVVVATNIAETSVTIDGIVYVLDPGFCKQKSYSARTGMESLVVTPCSRASANQRAGRAGRVAPGKCFRLYTAWAFQHELEETAVPEIQRADLGALVLLLKSLGINDLIHFDFLDPPPHETLVLALEQLYALGALNHLGELTTLGRRMAELPVEPMLAKMILASEQYGCTEEVLTVAAMLSVNNAVFYRPKDKVLHADSARVAFGVPGGDHLVLLNVYNQWVASGHSLQWCYEHFVQARSLRRARDVREQLQGLMERVEIAPSSCGGNLDLVRKAITAGFFYHTARLARGGYRTVKHQQPVFIHPNSALFALQPRWVLYHELVCTSKEFMRQVLEIDSSWLLEVAPHYYQAKELEDGSGRKMPKKAGKSREELG
SIO_010081: DHX16
subclass of: SO_0000673
so part of: DHX16
location: join(124571..124621,126596..126784,127688..127798,128762..128877,130013..130223,131658..131756,132564..132716,133180..133320,134266..134428,135317..135435,135741..135808,136522..136684,137576..137737,138689..138862,139136..139264)
location: region:124571-139264:1
so has part: feature:124571-124621:1:exon
so has part: feature:126596-126784:1:exon
so has part: feature:127688-127798:1:exon
so has part: feature:128762-128877:1:exon
so has part: feature:130013-130223:1:exon
so has part: feature:131658-131756:1:exon
so has part: feature:132564-132716:1:exon
so has part: feature:133180-133320:1:exon
so has part: feature:134266-134428:1:exon
so has part: feature:135317-135435:1:exon
so has part: feature:135741-135808:1:exon
so has part: feature:136522-136684:1:exon
so has part: feature:137576-137737:1:exon
so has part: feature:138689-138862:1:exon
so has part: feature:139136-139264:1:exon

XP_041568645.1
type: Protein
SIO_000068: ncbiprotein

position:124571:1
position: 124571
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:124571-124621:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:126596-126784:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:127688-127798:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:128762-128877:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:130013-130223:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:131658-131756:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:132564-132716:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:133180-133320:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:134266-134428:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:135317-135435:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:135741-135808:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:136522-136684:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:137576-137737:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:138689-138862:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:139136-139264:1:exon

DHX16
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: DHX16
product: DEAH-box helicase 16, transcript variant X7
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 ESTs, 31 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 33 samples with support for all annotated introns
transcript id: XM_041712709.1
SIO_010081: DHX16
subclass of: SO_0000673
so part of: DHX16
location: join(124777..124841,126596..126784,127688..127798,128762..128877,130013..130223,131658..131756,132564..132716,133180..133320,134266..134428,135317..135435,135741..135808,136522..136684,137576..137737,138689..138862,139136..139365)
location: region:124777-139365:1
so has part: feature:124777-124841:1:exon
so has part: feature:126596-126784:1:exon
so has part: feature:127688-127798:1:exon
so has part: feature:128762-128877:1:exon
so has part: feature:130013-130223:1:exon
so has part: feature:131658-131756:1:exon
so has part: feature:132564-132716:1:exon
so has part: feature:133180-133320:1:exon
so has part: feature:134266-134428:1:exon
so has part: feature:135317-135435:1:exon
so has part: feature:135741-135808:1:exon
so has part: feature:136522-136684:1:exon
so has part: feature:137576-137737:1:exon
so has part: feature:138689-138862:1:exon
so has part: feature:139136-139365:1:exon

position:124777:1
position: 124777
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:124777-124841:1:exon

position:124841:1
position: 124841
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:126596-126784:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:127688-127798:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:128762-128877:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:130013-130223:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:131658-131756:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:132564-132716:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:133180-133320:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:134266-134428:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:135317-135435:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:135741-135808:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:136522-136684:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:137576-137737:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:138689-138862:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:139136-139365:1:exon

DHX16
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: DHX16
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 isoform X4
translation: MVQFVSAARLEGTDPQKDVPEAVPEAERRRQSLQDARRALPIFPFREELLAAVGQHQVLVIEGETGSGKTTQIPQYLHEEGYTRAGMKIGVTQPRRVAAMSVAARVAVEMGTKLGNEVGYSIRFEDCTSERTVLKYMTDGMLLREFLTEPDLASYSVIMVDEAHERTLHTDVLFGLIKDIARFRPQLKVLVASATMDTERFSAFFDHAPVFRIPGRRFPVDIYYTKAPEADYLEACVVSVLQIHVTQPPGDILVFLTGQEEIEACVELLQERCRRLGSRLPELLVLPIYANLPSELQARIFQPTPPGARKVVVATNIAETSVTIDGIVYVLDPGFCKQKSYSARTGMESLVVTPCSRASANQRAGRAGRVAPGKCFRLYTAWAFQHELEETAVPEIQRADLGALVLLLKSLGINDLIHFDFLDPPPHETLVLALEQLYALGALNHLGELTTLGRRMAELPVEPMLAKMILASEQYGCTEEVLTVAAMLSVNNAVFYRPKDKVLHADSARVAFGVPGGDHLVLLNVYNQWVASGHSLQWCYEHFVQARSLRRARDVREQLQGLMERVEIAPSSCGGNLDLVRKAITAGFFYHTARLARGGYRTVKHQQPVFIHPNSALFALQPRWVLYHELVCTSKEFMRQVLEIDSSWLLEVAPHYYQAKELEDGSGRKMPKKAGKSREELG
SIO_010081: DHX16
subclass of: SO_0000673
so part of: DHX16
location: join(124791..124841,126596..126784,127688..127798,128762..128877,130013..130223,131658..131756,132564..132716,133180..133320,134266..134428,135317..135435,135741..135808,136522..136684,137576..137737,138689..138862,139136..139264)
location: region:124791-139264:1
so has part: feature:124791-124841:1:exon
so has part: feature:126596-126784:1:exon
so has part: feature:127688-127798:1:exon
so has part: feature:128762-128877:1:exon
so has part: feature:130013-130223:1:exon
so has part: feature:131658-131756:1:exon
so has part: feature:132564-132716:1:exon
so has part: feature:133180-133320:1:exon
so has part: feature:134266-134428:1:exon
so has part: feature:135317-135435:1:exon
so has part: feature:135741-135808:1:exon
so has part: feature:136522-136684:1:exon
so has part: feature:137576-137737:1:exon
so has part: feature:138689-138862:1:exon
so has part: feature:139136-139264:1:exon

XP_041568643.1
type: Protein
SIO_000068: ncbiprotein

position:124791:1
position: 124791
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:124791-124841:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:126596-126784:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:127688-127798:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:128762-128877:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:130013-130223:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:131658-131756:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:132564-132716:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:133180-133320:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:134266-134428:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:135317-135435:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:135741-135808:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:136522-136684:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:137576-137737:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:138689-138862:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:139136-139264:1:exon

DHX16
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: DHX16
product: DEAH-box helicase 16, transcript variant X8
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 ESTs, 31 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 31 samples with support for all annotated introns
transcript id: XM_041712710.1
SIO_010081: DHX16
subclass of: SO_0000673
so part of: DHX16
location: join(125121..125184,126596..126784,127688..127798,128762..128877,130013..130223,131658..131756,132564..132716,133180..133320,134266..134428,135317..135435,135741..135808,136522..136684,137576..137737,138689..138862,139136..139365)
location: region:125121-139365:1
so has part: feature:125121-125184:1:exon
so has part: feature:126596-126784:1:exon
so has part: feature:127688-127798:1:exon
so has part: feature:128762-128877:1:exon
so has part: feature:130013-130223:1:exon
so has part: feature:131658-131756:1:exon
so has part: feature:132564-132716:1:exon
so has part: feature:133180-133320:1:exon
so has part: feature:134266-134428:1:exon
so has part: feature:135317-135435:1:exon
so has part: feature:135741-135808:1:exon
so has part: feature:136522-136684:1:exon
so has part: feature:137576-137737:1:exon
so has part: feature:138689-138862:1:exon
so has part: feature:139136-139365:1:exon

position:125121:1
position: 125121
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:125121-125184:1:exon

position:125184:1
position: 125184
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:126596-126784:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:127688-127798:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:128762-128877:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:130013-130223:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:131658-131756:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:132564-132716:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:133180-133320:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:134266-134428:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:135317-135435:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:135741-135808:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:136522-136684:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:137576-137737:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:138689-138862:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:139136-139365:1:exon

DHX16
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: DHX16
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 isoform X5
translation: MVQFVSAARLEGTDPQKDVPEAVPEAERRRQSLQDARRALPIFPFREELLAAVGQHQVLVIEGETGSGKTTQIPQYLHEEGYTRAGMKIGVTQPRRVAAMSVAARVAVEMGTKLGNEVGYSIRFEDCTSERTVLKYMTDGMLLREFLTEPDLASYSVIMVDEAHERTLHTDVLFGLIKDIARFRPQLKVLVASATMDTERFSAFFDHAPVFRIPGRRFPVDIYYTKAPEADYLEACVVSVLQIHVTQPPGDILVFLTGQEEIEACVELLQERCRRLGSRLPELLVLPIYANLPSELQARIFQPTPPGARKVVVATNIAETSVTIDGIVYVLDPGFCKQKSYSARTGMESLVVTPCSRASANQRAGRAGRVAPGKCFRLYTAWAFQHELEETAVPEIQRADLGALVLLLKSLGINDLIHFDFLDPPPHETLVLALEQLYALGALNHLGELTTLGRRMAELPVEPMLAKMILASEQYGCTEEVLTVAAMLSVNNAVFYRPKDKVLHADSARVAFGVPGGDHLVLLNVYNQWVASGHSLQWCYEHFVQARSLRRARDVREQLQGLMERVEIAPSSCGGNLDLVRKAITAGFFYHTARLARGGYRTVKHQQPVFIHPNSALFALQPRWVLYHELVCTSKEFMRQVLEIDSSWLLEVAPHYYQAKELEDGSGRKMPKKAGKSREELG
SIO_010081: DHX16
subclass of: SO_0000673
so part of: DHX16
location: join(125134..125184,126596..126784,127688..127798,128762..128877,130013..130223,131658..131756,132564..132716,133180..133320,134266..134428,135317..135435,135741..135808,136522..136684,137576..137737,138689..138862,139136..139264)
location: region:125134-139264:1
so has part: feature:125134-125184:1:exon
so has part: feature:126596-126784:1:exon
so has part: feature:127688-127798:1:exon
so has part: feature:128762-128877:1:exon
so has part: feature:130013-130223:1:exon
so has part: feature:131658-131756:1:exon
so has part: feature:132564-132716:1:exon
so has part: feature:133180-133320:1:exon
so has part: feature:134266-134428:1:exon
so has part: feature:135317-135435:1:exon
so has part: feature:135741-135808:1:exon
so has part: feature:136522-136684:1:exon
so has part: feature:137576-137737:1:exon
so has part: feature:138689-138862:1:exon
so has part: feature:139136-139264:1:exon

XP_041568644.1
type: Protein
SIO_000068: ncbiprotein

position:125134:1
position: 125134
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:125134-125184:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:126596-126784:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:127688-127798:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:128762-128877:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:130013-130223:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:131658-131756:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:132564-132716:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:133180-133320:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:134266-134428:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:135317-135435:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:135741-135808:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:136522-136684:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:137576-137737:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:138689-138862:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:139136-139264:1:exon

C35H6orf136
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: C35H6orf136
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(139376..143053)
location: region:139376-143053:-1
so has part: feature:139376-143053:-1:exon
subclass of: SO_0000010

115492252
type: Gene
SIO_000068: ncbigene

position:139376:-1
position: 139376
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:143053:-1
position: 143053
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:139376-143053:-1:exon

C35H6orf136
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: C35H6orf136
product: chromosome 35 C6orf136 homolog
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 1 EST, 2 Proteins, and 90% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_041712678.1
SIO_010081: C35H6orf136
subclass of: SO_0000673
so part of: C35H6orf136
location: complement(join(139376..139590,140039..140108,140565..140765,141312..141400,141682..141945,142624..142864,142920..143053))
location: region:139376-143053:-1
so has part: feature:142920-143053:-1:exon
so has part: feature:142624-142864:-1:exon
so has part: feature:141682-141945:-1:exon
so has part: feature:141312-141400:-1:exon
so has part: feature:140565-140765:-1:exon
so has part: feature:140039-140108:-1:exon
so has part: feature:139376-139590:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:142920-143053:-1:exon

position:142920:-1
position: 142920
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:142624-142864:-1:exon

position:142624:-1
position: 142624
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:142864:-1
position: 142864
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:141682-141945:-1:exon

position:141682:-1
position: 141682
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:141945:-1
position: 141945
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:141312-141400:-1:exon

position:141312:-1
position: 141312
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:141400:-1
position: 141400
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:140565-140765:-1:exon

position:140565:-1
position: 140565
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:140765:-1
position: 140765
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:140039-140108:-1:exon

position:140039:-1
position: 140039
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:140108:-1
position: 140108
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:139376-139590:-1:exon

position:139590:-1
position: 139590
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

C35H6orf136
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: C35H6orf136
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: uncharacterized protein C6orf136 homolog
translation: MAPPPCVGTALPIGWRLLAPPLRSFLNERRVGGKNAGPARMRSRLARGPRRRAASGGVRGKRGGGGGAAGDERGSSGDSAASAAMYRHVTAAVTARLRPGRAWAPAASAAPGAAPPRRRYRARPQGLEPPLGLSLLPAPRCPPARGLEGLGGPVTTVDGRREDDIDVRDPPRLLAGPPGPPPGTPGTPPGRRGSPPPSMEEHLATMHERLRHELPNFFLKIPDYALYAPDVEFQCQHLNLHTRGRAMYALALALCRALAWGYFASLRLEVLALTRHPEDWSLRARWRLTGLPLHLLLLRWYRRDKRTLLRSYDAFSTFFLNSQGLIRCHRVDKLMPAPTAVPEPKKLLVAAALAVALARP
SIO_010081: C35H6orf136
subclass of: SO_0000673
so part of: C35H6orf136
location: complement(join(139507..139590,140039..140108,140565..140765,141312..141400,141682..141945,142624..142864,142920..143053))
location: region:139507-143053:-1
so has part: feature:142920-143053:-1:exon
so has part: feature:142624-142864:-1:exon
so has part: feature:141682-141945:-1:exon
so has part: feature:141312-141400:-1:exon
so has part: feature:140565-140765:-1:exon
so has part: feature:140039-140108:-1:exon
so has part: feature:139507-139590:-1:exon

XP_041568612.1
type: Protein
SIO_000068: ncbiprotein

position:139507:-1
position: 139507
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:142920-143053:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:142624-142864:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:141682-141945:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:141312-141400:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:140565-140765:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:140039-140108:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:139507-139590:-1:exon

ATAT1
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: ATAT1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(143114..149981)
location: region:143114-149981:-1
so has part: feature:143114-149981:-1:exon
subclass of: SO_0000010

115492253
type: Gene
SIO_000068: ncbigene

position:143114:-1
position: 143114
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:149981:-1
position: 149981
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:143114-149981:-1:exon

ATAT1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: ATAT1
product: alpha tubulin acetyltransferase 1, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 25 ESTs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 15 samples with support for all annotated introns
transcript id: XM_041712760.1
SIO_010081: ATAT1
subclass of: SO_0000673
so part of: ATAT1
location: complement(join(143114..143539,143614..143689,144272..144410,144710..144784,145545..145590,146418..146519,147646..147759,148064..148124,148363..148445,148934..148997,149409..149981))
location: region:143114-149981:-1
so has part: feature:149409-149981:-1:exon
so has part: feature:148934-148997:-1:exon
so has part: feature:148363-148445:-1:exon
so has part: feature:148064-148124:-1:exon
so has part: feature:147646-147759:-1:exon
so has part: feature:146418-146519:-1:exon
so has part: feature:145545-145590:-1:exon
so has part: feature:144710-144784:-1:exon
so has part: feature:144272-144410:-1:exon
so has part: feature:143614-143689:-1:exon
so has part: feature:143114-143539:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:149409-149981:-1:exon

position:149409:-1
position: 149409
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:148934-148997:-1:exon

position:148934:-1
position: 148934
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:148997:-1
position: 148997
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:148363-148445:-1:exon

position:148363:-1
position: 148363
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:148445:-1
position: 148445
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:148064-148124:-1:exon

position:148064:-1
position: 148064
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:148124:-1
position: 148124
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:147646-147759:-1:exon

position:147646:-1
position: 147646
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:147759:-1
position: 147759
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:146418-146519:-1:exon

position:146418:-1
position: 146418
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:146519:-1
position: 146519
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:145545-145590:-1:exon

position:145545:-1
position: 145545
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:145590:-1
position: 145590
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:144710-144784:-1:exon

position:144710:-1
position: 144710
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:144784:-1
position: 144784
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:144272-144410:-1:exon

position:144272:-1
position: 144272
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:144410:-1
position: 144410
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:143614-143689:-1:exon

position:143614:-1
position: 143614
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:143689:-1
position: 143689
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:143114-143539:-1:exon

position:143539:-1
position: 143539
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

ATAT1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: ATAT1
product: alpha tubulin acetyltransferase 1, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 15 samples with support for all annotated introns
transcript id: XM_041712761.1
SIO_010081: ATAT1
subclass of: SO_0000673
so part of: ATAT1
location: complement(join(143114..143539,143614..143689,144272..144410,144710..144784,145545..145590,146418..146519,147646..147759,148064..148124,148363..148449,148934..148997,149409..149565))
location: region:143114-149565:-1
so has part: feature:149409-149565:-1:exon
so has part: feature:148934-148997:-1:exon
so has part: feature:148363-148449:-1:exon
so has part: feature:148064-148124:-1:exon
so has part: feature:147646-147759:-1:exon
so has part: feature:146418-146519:-1:exon
so has part: feature:145545-145590:-1:exon
so has part: feature:144710-144784:-1:exon
so has part: feature:144272-144410:-1:exon
so has part: feature:143614-143689:-1:exon
so has part: feature:143114-143539:-1:exon

position:149565:-1
position: 149565
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:149409-149565:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:148934-148997:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:148363-148449:-1:exon

position:148449:-1
position: 148449
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:148064-148124:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:147646-147759:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:146418-146519:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:145545-145590:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:144710-144784:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:144272-144410:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:143614-143689:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:143114-143539:-1:exon

ATAT1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: ATAT1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: alpha-tubulin N-acetyltransferase 1 isoform X1
translation: MEFPFDLAPVLGPERFCVVDQHLRPAGRGGGGGGEREQQLEQRLRTVIDELGKASAKAQGLSTPVTSAARMESNRHVLYMLRDTRPPRGAVLGFLKVGYKKLFLLDQDGSHVEVEPLCVLDFYVHESQQRRGLGRELFREMLQRERMAPQRLAVDRPSPKLLGFLDKHFGLCRPIPQVNNFVIFEGFFSTRTAPARRPFPRPRPEEPIKPYSLSERDFLREELEPPWPFNLSRGSPVRGSLRPFLPRRDPTAAPAPEPPPRRASSLGRVGR
SIO_010081: ATAT1
subclass of: SO_0000673
so part of: ATAT1
location: complement(join(143665..143689,144272..144410,144710..144784,145545..145590,146418..146519,147646..147759,148064..148124,148363..148445,148934..148997,149409..149515))
location: region:143665-149515:-1
so has part: feature:149409-149515:-1:exon
so has part: feature:148934-148997:-1:exon
so has part: feature:148363-148445:-1:exon
so has part: feature:148064-148124:-1:exon
so has part: feature:147646-147759:-1:exon
so has part: feature:146418-146519:-1:exon
so has part: feature:145545-145590:-1:exon
so has part: feature:144710-144784:-1:exon
so has part: feature:144272-144410:-1:exon
so has part: feature:143665-143689:-1:exon

XP_041568694.1
type: Protein
SIO_000068: ncbiprotein

position:143665:-1
position: 143665
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:149515:-1
position: 149515
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:149409-149515:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:148934-148997:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:148363-148445:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:148064-148124:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:147646-147759:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:146418-146519:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:145545-145590:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:144710-144784:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:144272-144410:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:143665-143689:-1:exon

ATAT1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: ATAT1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: alpha-tubulin N-acetyltransferase 1 isoform X2
translation: MSWARPRPRQAQGLSTPVTSAARMESNRHVLYMLRDTRPPRGAVLGFLKVGYKKLFLLDQDGSHVEVEPLCVLDFYVHESQQRRGLGRELFREMLQRERMAPQRLAVDRPSPKLLGFLDKHFGLCRPIPQVNNFVIFEGFFSTRTAPARRPFPRPRPEEPIKPYSLSERDFLREELEPPWPFNLSRGSPVRGSLRPFLPRRDPTAAPAPEPPPRRASSLGRVGR
SIO_010081: ATAT1
subclass of: SO_0000673
so part of: ATAT1
location: complement(join(143665..143689,144272..144410,144710..144784,145545..145590,146418..146519,147646..147759,148064..148124,148363..148449,148934..148959))
location: region:143665-148959:-1
so has part: feature:148934-148959:-1:exon
so has part: feature:148363-148449:-1:exon
so has part: feature:148064-148124:-1:exon
so has part: feature:147646-147759:-1:exon
so has part: feature:146418-146519:-1:exon
so has part: feature:145545-145590:-1:exon
so has part: feature:144710-144784:-1:exon
so has part: feature:144272-144410:-1:exon
so has part: feature:143665-143689:-1:exon

XP_041568695.1
type: Protein
SIO_000068: ncbiprotein

position:148959:-1
position: 148959
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:148934-148959:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:148363-148449:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:148064-148124:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:147646-147759:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:146418-146519:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:145545-145590:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:144710-144784:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:144272-144410:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:143665-143689:-1:exon

MRPS18B
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: MRPS18B
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(150122..154146)
location: region:150122-154146:-1
so has part: feature:150122-154146:-1:exon
subclass of: SO_0000010

115492219
type: Gene
SIO_000068: ncbigene

position:150122:-1
position: 150122
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:154146:-1
position: 154146
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:150122-154146:-1:exon

MRPS18B
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: MRPS18B
product: mitochondrial ribosomal protein S18B
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 2 Proteins, and 75% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_041712679.1
SIO_010081: MRPS18B
subclass of: SO_0000673
so part of: MRPS18B
location: complement(join(150122..150383,150456..150515,151384..151450,151576..151644,152884..152981,153067..153167,153766..153802,153945..154146))
location: region:150122-154146:-1
so has part: feature:153945-154146:-1:exon
so has part: feature:153766-153802:-1:exon
so has part: feature:153067-153167:-1:exon
so has part: feature:152884-152981:-1:exon
so has part: feature:151576-151644:-1:exon
so has part: feature:151384-151450:-1:exon
so has part: feature:150456-150515:-1:exon
so has part: feature:150122-150383:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:153945-154146:-1:exon

position:153945:-1
position: 153945
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:153766-153802:-1:exon

position:153766:-1
position: 153766
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:153802:-1
position: 153802
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:153067-153167:-1:exon

position:153067:-1
position: 153067
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:153167:-1
position: 153167
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:152884-152981:-1:exon

position:152884:-1
position: 152884
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:152981:-1
position: 152981
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:151576-151644:-1:exon

position:151576:-1
position: 151576
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:151644:-1
position: 151644
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:151384-151450:-1:exon

position:151384:-1
position: 151384
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:151450:-1
position: 151450
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:150456-150515:-1:exon

position:150456:-1
position: 150456
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:150515:-1
position: 150515
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:150122-150383:-1:exon

position:150383:-1
position: 150383
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

MRPS18B
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: MRPS18B
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: 28S ribosomal protein S18b, mitochondrial
translation: MAAAAPGAAFYTEPRPRRAAPRLPPVEPPHGACAGLAARTRKAARRWPRAVWRSFNSGQGGRERRCAWRRAAPGGRGGLRPSPASAAAGAPPEPPPAAPSPYLERPWAYLESEEYRAAYGDSPVWHGYRRNHKGSVPPQRARKACLRRGRPVGNPCPLCRDRNLLVDFRNVKLLDQFICPHSGVIFHPIHTGICMKQHRRLSQAIAQAQAHGLLWLQVPFVPVPDEDFSNRHAAVGRTPPAPALREPRRAWYPWYERWQPPAAELARVRRLYRGFLREEHPDTAPSPSAK
SIO_010081: MRPS18B
subclass of: SO_0000673
so part of: MRPS18B
location: complement(join(150145..150383,150456..150515,151384..151450,151576..151644,152884..152981,153067..153167,153766..153802,153945..154146))
location: region:150145-154146:-1
so has part: feature:153945-154146:-1:exon
so has part: feature:153766-153802:-1:exon
so has part: feature:153067-153167:-1:exon
so has part: feature:152884-152981:-1:exon
so has part: feature:151576-151644:-1:exon
so has part: feature:151384-151450:-1:exon
so has part: feature:150456-150515:-1:exon
so has part: feature:150145-150383:-1:exon

XP_041568613.1
type: Protein
SIO_000068: ncbiprotein

position:150145:-1
position: 150145
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:153945-154146:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:153766-153802:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:153067-153167:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:152884-152981:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:151576-151644:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:151384-151450:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:150456-150515:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:150145-150383:-1:exon

PPP1R10
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: PPP1R10
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 154215..175733
location: region:154215-175733:1
so has part: feature:154215-175733:1:exon
subclass of: SO_0000010

101232902
type: Gene
SIO_000068: ncbigene

position:154215:1
position: 154215
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:175733:1
position: 175733
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:154215-175733:1:exon

PPP1R10
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: PPP1R10
product: protein phosphatase 1 regulatory subunit 10
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 ESTs, 1 long SRA read, 5 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments, including 64 samples with support for all annotated introns
transcript id: XM_032746206.2
SIO_010081: PPP1R10
subclass of: SO_0000673
so part of: PPP1R10
location: join(154215..155183,159628..159746,159834..159920,161827..161962,162371..162422,162751..162828,162924..163094,163583..163682,164119..164228,164555..164655,165181..165325,165973..166128,166769..167015,168464..168539,168625..168822,170140..170254,170917..171003,172106..172545,175518..175733)
location: region:154215-175733:1
so has part: feature:154215-155183:1:exon
so has part: feature:159628-159746:1:exon
so has part: feature:159834-159920:1:exon
so has part: feature:161827-161962:1:exon
so has part: feature:162371-162422:1:exon
so has part: feature:162751-162828:1:exon
so has part: feature:162924-163094:1:exon
so has part: feature:163583-163682:1:exon
so has part: feature:164119-164228:1:exon
so has part: feature:164555-164655:1:exon
so has part: feature:165181-165325:1:exon
so has part: feature:165973-166128:1:exon
so has part: feature:166769-167015:1:exon
so has part: feature:168464-168539:1:exon
so has part: feature:168625-168822:1:exon
so has part: feature:170140-170254:1:exon
so has part: feature:170917-171003:1:exon
so has part: feature:172106-172545:1:exon
so has part: feature:175518-175733:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:154215-155183:1:exon

position:155183:1
position: 155183
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:159628-159746:1:exon

position:159628:1
position: 159628
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:159746:1
position: 159746
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:159834-159920:1:exon

position:159834:1
position: 159834
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:159920:1
position: 159920
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:161827-161962:1:exon

position:161827:1
position: 161827
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:161962:1
position: 161962
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:162371-162422:1:exon

position:162371:1
position: 162371
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:162422:1
position: 162422
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:162751-162828:1:exon

position:162751:1
position: 162751
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:162828:1
position: 162828
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:162924-163094:1:exon

position:162924:1
position: 162924
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:163094:1
position: 163094
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:163583-163682:1:exon

position:163583:1
position: 163583
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:163682:1
position: 163682
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:164119-164228:1:exon

position:164119:1
position: 164119
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:164228:1
position: 164228
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:164555-164655:1:exon

position:164555:1
position: 164555
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:164655:1
position: 164655
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:165181-165325:1:exon

position:165181:1
position: 165181
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:165325:1
position: 165325
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:165973-166128:1:exon

position:165973:1
position: 165973
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:166128:1
position: 166128
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:166769-167015:1:exon

position:166769:1
position: 166769
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:167015:1
position: 167015
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:168464-168539:1:exon

position:168464:1
position: 168464
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:168539:1
position: 168539
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:168625-168822:1:exon

position:168625:1
position: 168625
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:168822:1
position: 168822
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:170140-170254:1:exon

position:170140:1
position: 170140
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:170254:1
position: 170254
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:170917-171003:1:exon

position:170917:1
position: 170917
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:171003:1
position: 171003
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:172106-172545:1:exon

position:172106:1
position: 172106
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:172545:1
position: 172545
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:175518-175733:1:exon

position:175518:1
position: 175518
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

PPP1R10
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: PPP1R10
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: serine/threonine-protein phosphatase 1 regulatory subunit 10
translation: MGSGPIDPKELLKGLDCFLGRDGEVKTMDGISKIFSLMKDSQKMVSRCIYLNILLQTRAQDILAKFIRIGGYKLLNTWLTGSKAANNVPFLQQLLLTLQHLPLTVDHLKQNNTAKLVKQLSKSSDDEELRRLASILVSDWMGVIRSQSSSQPTERDKKKRKEENKSKTPVPEKPQETKNEAKNEEIPEKKREKPKSLRTTAPSHAKFRSTGLELETPSLVPVKKLNSASSDKYSLKPVPVKRQSAPTAPGEAPLAEKKYKPLNTAPNAAKEIKVKIIPPQPMEGLGFLDALNSAPVPGIKIKKKKKVLSPTAAKPSPFEGKPAPEPSTAKPSSPEPAAAEPMDTDRPGTPVPAIEVPEPMDTGSSEAGGDPKATDVPSEGGPAPRRTRKKKSVSWPEEGRLREYFYFELDETERVNVNKIKDFGEAAKREMLKDRHAFETARRLSHDSMEEKVPWIYPKALELPAPLVIPGSGSRERFTQAERVKGILQEIFLSKESIPDSPHEPDPESYEPLPPKLIPLDEDCSGEDGAYPEGLDPGNSAASPEPGAGAKLPPVLANLMGSVGAGKGPPGPPQNAPINMQEILSSIMGGPSSHKAEELLKQPDYSDKIKHLLGNLGSQPPGGPGGVPHGLLGPGPMNGFPPPKMQHFPPGGPMPGPHGGGGGAGAGPGLPPGLPGGPRMMGPPPPSXGDFWGEGPDGGGGGGGLRGGPPPNGGGGGGMRGGGGGGGGPPPPPFHRPPPRGGRGGAEPPPPPRTAAGAGGAAGAPPQRRRRRGRVPGGAPPAPRRARQRPPPPRGHGGGHGGDMSSRAVCRHFMLKGSCRYENNCAFYHPGVNGPPLP
SIO_010081: PPP1R10
subclass of: SO_0000673
so part of: PPP1R10
location: join(159640..159746,159834..159920,161827..161962,162371..162422,162751..162828,162924..163094,163583..163682,164119..164228,164555..164655,165181..165325,165973..166128,166769..167015,168464..168539,168625..168822,170140..170254,170917..171003,172106..172545,175518..175627)
location: region:159640-175627:1
so has part: feature:159640-159746:1:exon
so has part: feature:159834-159920:1:exon
so has part: feature:161827-161962:1:exon
so has part: feature:162371-162422:1:exon
so has part: feature:162751-162828:1:exon
so has part: feature:162924-163094:1:exon
so has part: feature:163583-163682:1:exon
so has part: feature:164119-164228:1:exon
so has part: feature:164555-164655:1:exon
so has part: feature:165181-165325:1:exon
so has part: feature:165973-166128:1:exon
so has part: feature:166769-167015:1:exon
so has part: feature:168464-168539:1:exon
so has part: feature:168625-168822:1:exon
so has part: feature:170140-170254:1:exon
so has part: feature:170917-171003:1:exon
so has part: feature:172106-172545:1:exon
so has part: feature:175518-175627:1:exon

XP_032602097.2
type: Protein
SIO_000068: ncbiprotein

position:159640:1
position: 159640
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:175627:1
position: 175627
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:159640-159746:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:159834-159920:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:161827-161962:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:162371-162422:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:162751-162828:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:162924-163094:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:163583-163682:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:164119-164228:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:164555-164655:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:165181-165325:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:165973-166128:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:166769-167015:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:168464-168539:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:168625-168822:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:170140-170254:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:170917-171003:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:172106-172545:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:175518-175627:1:exon

ABCF1
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: ABCF1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(177502..195246)
location: region:177502-195246:-1
so has part: feature:177502-195246:-1:exon
subclass of: SO_0000010

115492217
type: Gene
SIO_000068: ncbigene

position:177502:-1
position: 177502
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:195246:-1
position: 195246
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:177502-195246:-1:exon

ABCF1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: ABCF1
product: ATP binding cassette subfamily F member 1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XM_041712718.1
SIO_010081: ABCF1
subclass of: SO_0000673
so part of: ABCF1
location: complement(join(177502..178307,178413..178485,178867..178931,179419..179587,180586..180618,181326..181396,181512..181586,182504..182675,183326..183438,184250..184374,185293..185376,186278..186426,187432..187571,188298..188383,188954..189054,190135..190260,190379..190462,191224..191316,191455..191526,191817..191924,192496..192530,192612..192750,193233..193319,193910..193956,195126..195246))
location: region:177502-195246:-1
so has part: feature:195126-195246:-1:exon
so has part: feature:193910-193956:-1:exon
so has part: feature:193233-193319:-1:exon
so has part: feature:192612-192750:-1:exon
so has part: feature:192496-192530:-1:exon
so has part: feature:191817-191924:-1:exon
so has part: feature:191455-191526:-1:exon
so has part: feature:191224-191316:-1:exon
so has part: feature:190379-190462:-1:exon
so has part: feature:190135-190260:-1:exon
so has part: feature:188954-189054:-1:exon
so has part: feature:188298-188383:-1:exon
so has part: feature:187432-187571:-1:exon
so has part: feature:186278-186426:-1:exon
so has part: feature:185293-185376:-1:exon
so has part: feature:184250-184374:-1:exon
so has part: feature:183326-183438:-1:exon
so has part: feature:182504-182675:-1:exon
so has part: feature:181512-181586:-1:exon
so has part: feature:181326-181396:-1:exon
so has part: feature:180586-180618:-1:exon
so has part: feature:179419-179587:-1:exon
so has part: feature:178867-178931:-1:exon
so has part: feature:178413-178485:-1:exon
so has part: feature:177502-178307:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:195126-195246:-1:exon

position:195126:-1
position: 195126
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:193910-193956:-1:exon

position:193910:-1
position: 193910
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:193956:-1
position: 193956
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:193233-193319:-1:exon

position:193233:-1
position: 193233
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:193319:-1
position: 193319
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:192612-192750:-1:exon

position:192612:-1
position: 192612
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:192750:-1
position: 192750
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:192496-192530:-1:exon

position:192496:-1
position: 192496
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:192530:-1
position: 192530
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:191817-191924:-1:exon

position:191817:-1
position: 191817
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:191924:-1
position: 191924
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:191455-191526:-1:exon

position:191455:-1
position: 191455
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:191526:-1
position: 191526
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:191224-191316:-1:exon

position:191224:-1
position: 191224
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:191316:-1
position: 191316
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:190379-190462:-1:exon

position:190379:-1
position: 190379
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:190462:-1
position: 190462
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:190135-190260:-1:exon

position:190135:-1
position: 190135
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:190260:-1
position: 190260
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:188954-189054:-1:exon

position:188954:-1
position: 188954
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:189054:-1
position: 189054
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:188298-188383:-1:exon

position:188298:-1
position: 188298
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:188383:-1
position: 188383
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:187432-187571:-1:exon

position:187432:-1
position: 187432
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:187571:-1
position: 187571
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:186278-186426:-1:exon

position:186278:-1
position: 186278
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:186426:-1
position: 186426
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:185293-185376:-1:exon

position:185293:-1
position: 185293
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:185376:-1
position: 185376
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:184250-184374:-1:exon

position:184250:-1
position: 184250
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:184374:-1
position: 184374
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:183326-183438:-1:exon

position:183326:-1
position: 183326
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:183438:-1
position: 183438
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:182504-182675:-1:exon

position:182504:-1
position: 182504
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:182675:-1
position: 182675
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:181512-181586:-1:exon

position:181512:-1
position: 181512
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:181586:-1
position: 181586
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:181326-181396:-1:exon

position:181326:-1
position: 181326
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:181396:-1
position: 181396
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:180586-180618:-1:exon

position:180586:-1
position: 180586
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:180618:-1
position: 180618
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 22
SIO_000628: feature:179419-179587:-1:exon

position:179419:-1
position: 179419
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:179587:-1
position: 179587
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 23
SIO_000628: feature:178867-178931:-1:exon

position:178867:-1
position: 178867
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:178931:-1
position: 178931
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 24
SIO_000628: feature:178413-178485:-1:exon

position:178413:-1
position: 178413
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:178485:-1
position: 178485
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 25
SIO_000628: feature:177502-178307:-1:exon

position:178307:-1
position: 178307
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

ABCF1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: ABCF1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ATP-binding cassette sub-family F member 1
translation: MRSARCPAMPKGARPAGAKQEEWRGGEEEQPLKKGRKDRKGKKSFFEELAEEEKAAPAPPTPAPEREGPAPAQGSRRKRERRKEGRRPRGAEPEPEEAELSRRLQALAAAAEEEEEEEEAPASRRAARRRKGGNVFAALSREQSEEEEEEEKEEEKEKKTTKGKSSKEEEEAEKRKKKKNAKKENPKEKLQNKFGALRDEEEEEEEEEEEEEEEGARKGSDNEEEEEGAGPRAGPDARVSKKEKKKMKKQAEFQRQVASLRAAAASGDGDFAVSQAELSSRQAMLENASDIKLEKFSISAHGKDLYVNADLFIVAGRRYGLVGPNGKGKTTLLKHIANRALSIPPNIDVLLCEQEVHADDTPAVHAVLRADTQRLRLLEEERHLQRLLDSGDDSAAQRLEKVYEELRAIGAAAAEAKARRILAGLGFTPEMQNRATRKFSGGWRMRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLNNYLQGWKKTLLVVSHDQGFLDDVCTDIIHLDSQRLHYYRGNYMTFKKMYQQKQKELMKQFEKQEKKLRDLKAGGKSTKQAEKQTKEALTRKQQKCRRRAPSEAAAEAPELLRRPREYSVRFTFPNPPPLSPPILGLHGVDFGYEGQELLFRNLDFGIDMESRVCIVGPNGVGKSTLLQLLTGALTPLRGQMRRNHRLKVGFFNQQAAEQLRLEETAAEFLQRSFNLAHQDARRCLGRFGLEGHAHTLQIAKLSGGQKARVVFAELACREPDVLILDEPTNNLDIESIDALADAINEYKGAVIVVSHDARLITETGCQLWVVEEQGLSQIDGDFHDYKREVLEALGEVVAARPRE
SIO_010081: ABCF1
subclass of: SO_0000673
so part of: ABCF1
location: complement(join(178141..178307,178413..178485,178867..178931,179419..179587,180586..180618,181326..181396,181512..181586,182504..182675,183326..183438,184250..184374,185293..185376,186278..186426,187432..187571,188298..188383,188954..189054,190135..190260,190379..190462,191224..191316,191455..191526,191817..191924,192496..192530,192612..192750,193233..193319,193910..193956,195126..195210))
location: region:178141-195210:-1
so has part: feature:195126-195210:-1:exon
so has part: feature:193910-193956:-1:exon
so has part: feature:193233-193319:-1:exon
so has part: feature:192612-192750:-1:exon
so has part: feature:192496-192530:-1:exon
so has part: feature:191817-191924:-1:exon
so has part: feature:191455-191526:-1:exon
so has part: feature:191224-191316:-1:exon
so has part: feature:190379-190462:-1:exon
so has part: feature:190135-190260:-1:exon
so has part: feature:188954-189054:-1:exon
so has part: feature:188298-188383:-1:exon
so has part: feature:187432-187571:-1:exon
so has part: feature:186278-186426:-1:exon
so has part: feature:185293-185376:-1:exon
so has part: feature:184250-184374:-1:exon
so has part: feature:183326-183438:-1:exon
so has part: feature:182504-182675:-1:exon
so has part: feature:181512-181586:-1:exon
so has part: feature:181326-181396:-1:exon
so has part: feature:180586-180618:-1:exon
so has part: feature:179419-179587:-1:exon
so has part: feature:178867-178931:-1:exon
so has part: feature:178413-178485:-1:exon
so has part: feature:178141-178307:-1:exon

XP_041568652.1
type: Protein
SIO_000068: ncbiprotein

position:178141:-1
position: 178141
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:195210:-1
position: 195210
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:195126-195210:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:193910-193956:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:193233-193319:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:192612-192750:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:192496-192530:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:191817-191924:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:191455-191526:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:191224-191316:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:190379-190462:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:190135-190260:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:188954-189054:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:188298-188383:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:187432-187571:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:186278-186426:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:185293-185376:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:184250-184374:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:183326-183438:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:182504-182675:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:181512-181586:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:181326-181396:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:180586-180618:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:179419-179587:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:178867-178931:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:178413-178485:-1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:178141-178307:-1:exon

GNL1
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: GNL1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 195503..205591
location: region:195503-205591:1
so has part: feature:195503-205591:1:exon
subclass of: SO_0000010

115492240
type: Gene
SIO_000068: ncbigene

position:195503:1
position: 195503
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:205591:1
position: 205591
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:195503-205591:1:exon

GNL1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: GNL1
product: G protein nucleolar 1 (putative), transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 40 samples with support for all annotated introns
transcript id: XM_041712733.1
SIO_010081: GNL1
subclass of: SO_0000673
so part of: GNL1
location: join(195503..195614,196667..196784,197563..197693,198503..198651,198758..198829,199982..200174,200805..200903,202089..202325,202591..202769,203405..203549,204856..204996,205325..205591)
location: region:195503-205591:1
so has part: feature:195503-195614:1:exon
so has part: feature:196667-196784:1:exon
so has part: feature:197563-197693:1:exon
so has part: feature:198503-198651:1:exon
so has part: feature:198758-198829:1:exon
so has part: feature:199982-200174:1:exon
so has part: feature:200805-200903:1:exon
so has part: feature:202089-202325:1:exon
so has part: feature:202591-202769:1:exon
so has part: feature:203405-203549:1:exon
so has part: feature:204856-204996:1:exon
so has part: feature:205325-205591:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:195503-195614:1:exon

position:195614:1
position: 195614
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:196667-196784:1:exon

position:196667:1
position: 196667
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:196784:1
position: 196784
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:197563-197693:1:exon

position:197563:1
position: 197563
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:197693:1
position: 197693
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:198503-198651:1:exon

position:198503:1
position: 198503
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:198651:1
position: 198651
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:198758-198829:1:exon

position:198758:1
position: 198758
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:198829:1
position: 198829
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:199982-200174:1:exon

position:199982:1
position: 199982
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:200174:1
position: 200174
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:200805-200903:1:exon

position:200805:1
position: 200805
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:200903:1
position: 200903
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:202089-202325:1:exon

position:202089:1
position: 202089
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:202325:1
position: 202325
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:202591-202769:1:exon

position:202591:1
position: 202591
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:202769:1
position: 202769
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:203405-203549:1:exon

position:203405:1
position: 203405
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:203549:1
position: 203549
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:204856-204996:1:exon

position:204856:1
position: 204856
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:204996:1
position: 204996
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:205325-205591:1:exon

position:205325:1
position: 205325
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

GNL1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: GNL1
product: G protein nucleolar 1 (putative), transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 36 samples with support for all annotated introns
transcript id: XM_041712732.1
SIO_010081: GNL1
subclass of: SO_0000673
so part of: GNL1
location: join(195524..195590,196276..196299,196667..196784,197563..197693,198503..198651,198758..198829,199982..200174,200805..200903,202089..202325,202591..202769,203405..203549,204856..204996,205325..205591)
location: region:195524-205591:1
so has part: feature:195524-195590:1:exon
so has part: feature:196276-196299:1:exon
so has part: feature:196667-196784:1:exon
so has part: feature:197563-197693:1:exon
so has part: feature:198503-198651:1:exon
so has part: feature:198758-198829:1:exon
so has part: feature:199982-200174:1:exon
so has part: feature:200805-200903:1:exon
so has part: feature:202089-202325:1:exon
so has part: feature:202591-202769:1:exon
so has part: feature:203405-203549:1:exon
so has part: feature:204856-204996:1:exon
so has part: feature:205325-205591:1:exon

position:195524:1
position: 195524
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:195524-195590:1:exon

position:195590:1
position: 195590
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:196276-196299:1:exon

position:196276:1
position: 196276
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:196299:1
position: 196299
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:196667-196784:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:197563-197693:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:198503-198651:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:198758-198829:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:199982-200174:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:200805-200903:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:202089-202325:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:202591-202769:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:203405-203549:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:204856-204996:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:205325-205591:1:exon

GNL1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: GNL1
product: G protein nucleolar 1 (putative), transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 16 samples with support for all annotated introns
transcript id: XM_041712734.1
SIO_010081: GNL1
subclass of: SO_0000673
so part of: GNL1
location: join(195524..195590,196276..196299,196667..196784,197563..197693,198503..198651,198758..198829,199982..200174,200805..200903,202089..202325,202591..202769,203217..203396)
location: region:195524-203396:1
so has part: feature:195524-195590:1:exon
so has part: feature:196276-196299:1:exon
so has part: feature:196667-196784:1:exon
so has part: feature:197563-197693:1:exon
so has part: feature:198503-198651:1:exon
so has part: feature:198758-198829:1:exon
so has part: feature:199982-200174:1:exon
so has part: feature:200805-200903:1:exon
so has part: feature:202089-202325:1:exon
so has part: feature:202591-202769:1:exon
so has part: feature:203217-203396:1:exon

position:203396:1
position: 203396
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:195524-195590:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:196276-196299:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:196667-196784:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:197563-197693:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:198503-198651:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:198758-198829:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:199982-200174:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:200805-200903:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:202089-202325:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:202591-202769:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:203217-203396:1:exon

position:203217:1
position: 203217
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

GNL1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: GNL1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: guanine nucleotide-binding protein-like 1 isoform X2
translation: MPRKRPFSAKQKKQQLRERRERKRGDAPAGPAPGPGSRSGSGERGGDGPPGDPQTEPPRRHDPGRFRLQLGGPRAEALERSRRRAQQELLELLPESAMELDPDRIYGPGLDFPRRPPWSFGMSPEALRAREEAAFREFLRGLGDSDSAGLAPFEHNLETWRQLWRVLEMSDIVLVIADARHPALGVPPALAAHVSQDLAKGLILILNKVDLVPPAVATAWSHLLRARHGPARVVPFCTAPGPAPGPGLQKRQKKRGGRWSRAVGPRLLLEACEEIVGGAVDLSSWRARLERAEQRPPEEEEEEDEDDEDEDEEDEDEEGEEPPCGDEDEEEEGAGPGGAALPRQWERYRHGVLTLGCVGLPNAGKSSVLNALLGRGAVGVSRAPGRTRYFQTHFLTAAVRLCDCPGLVFPSRAPPELQVLAGVYPIAQLQDPYSAVGFLGSRLALPPLLQLRPPGDGGWTAWELCEAWAEKRGYKTARAARNDVARAANGLLRLAAEGRLRLCFRPPGYSQEKERWELHPDTAALAAMTGGGASAPPPAGPAPSSEDEGEESEQATPPPSPAPNPFALLGEDEC
SIO_010081: GNL1
subclass of: SO_0000673
so part of: GNL1
location: join(195539..195614,196667..196784,197563..197693,198503..198651,198758..198829,199982..200174,200805..200903,202089..202325,202591..202769,203405..203549,204856..204996,205325..205509)
location: region:195539-205509:1
so has part: feature:195539-195614:1:exon
so has part: feature:196667-196784:1:exon
so has part: feature:197563-197693:1:exon
so has part: feature:198503-198651:1:exon
so has part: feature:198758-198829:1:exon
so has part: feature:199982-200174:1:exon
so has part: feature:200805-200903:1:exon
so has part: feature:202089-202325:1:exon
so has part: feature:202591-202769:1:exon
so has part: feature:203405-203549:1:exon
so has part: feature:204856-204996:1:exon
so has part: feature:205325-205509:1:exon

XP_041568667.1
type: Protein
SIO_000068: ncbiprotein

position:195539:1
position: 195539
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:205509:1
position: 205509
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:195539-195614:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:196667-196784:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:197563-197693:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:198503-198651:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:198758-198829:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:199982-200174:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:200805-200903:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:202089-202325:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:202591-202769:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:203405-203549:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:204856-204996:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:205325-205509:1:exon

GNL1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: GNL1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: guanine nucleotide-binding protein-like 1 isoform X1
translation: MPRKRPFSAKQKKQQLRERRERKRGDAPAGPAPGPGSRSGSGERGGDGPPGDPQTEPPRRHDPGRFRLQLGGPRAEALERSRRRAQQELLELLPESAMELDPDRIYGPGLDFPRRPPWSFGMSPEALRAREEAAFREFLRGLGDSDSAGLAPFEHNLETWRQLWRVLEMSDIVLVIADARHPALGVPPALAAHVSQDLAKGLILILNKVDLVPPAVATAWSHLLRARHGPARVVPFCTAPGPAPGPGLQKRQKKRGGRWSRAVGPRLLLEACEEIVGGAVDLSSWRARLERAEQRPPEEEEEEDEDDEDEDEEDEDEEGEEPPCGDEDEEEEGAGPGGAALPRQWERYRHGVLTLGCVGLPNAGKSSVLNALLGRGAVGVSRAPGRTRYFQTHFLTAAVRLCDCPGLVFPSRAPPELQVLAGVYPIAQLQDPYSAVGFLGSRLALPPLLQLRPPGDGGWTAWELCEAWAEKRGYKTARAARNDVARAANGLLRLAAEGRLRLCFRPPGYSQEKERWELHPDTAALAAMTGGGASAPPPAGPAPSSEDEGEESEQATPPPSPAPNPFALLGEDEC
SIO_010081: GNL1
subclass of: SO_0000673
so part of: GNL1
location: join(195539..195590,196276..196299,196667..196784,197563..197693,198503..198651,198758..198829,199982..200174,200805..200903,202089..202325,202591..202769,203405..203549,204856..204996,205325..205509)
location: region:195539-205509:1
so has part: feature:195539-195590:1:exon
so has part: feature:196276-196299:1:exon
so has part: feature:196667-196784:1:exon
so has part: feature:197563-197693:1:exon
so has part: feature:198503-198651:1:exon
so has part: feature:198758-198829:1:exon
so has part: feature:199982-200174:1:exon
so has part: feature:200805-200903:1:exon
so has part: feature:202089-202325:1:exon
so has part: feature:202591-202769:1:exon
so has part: feature:203405-203549:1:exon
so has part: feature:204856-204996:1:exon
so has part: feature:205325-205509:1:exon

XP_041568666.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:195539-195590:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:196276-196299:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:196667-196784:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:197563-197693:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:198503-198651:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:198758-198829:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:199982-200174:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:200805-200903:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:202089-202325:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:202591-202769:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:203405-203549:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:204856-204996:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:205325-205509:1:exon

GNL1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: GNL1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: guanine nucleotide-binding protein-like 1 isoform X3
translation: MPRKRPFSAKQKKQQLRERRERKRGDAPAGPAPGPGSRSGSGERGGDGPPGDPQTEPPRRHDPGRFRLQLGGPRAEALERSRRRAQQELLELLPESAMELDPDRIYGPGLDFPRRPPWSFGMSPEALRAREEAAFREFLRGLGDSDSAGLAPFEHNLETWRQLWRVLEMSDIVLVIADARHPALGVPPALAAHVSQDLAKGLILILNKVDLVPPAVATAWSHLLRARHGPARVVPFCTAPGPAPGPGLQKRQKKRGGRWSRAVGPRLLLEACEEIVGGAVDLSSWRARLERAEQRPPEEEEEEDEDDEDEDEEDEDEEGEEPPCGDEDEEEEGAGPGGAALPRQWERYRHGVLTLGCVGLPNAGKSSVLNALLGRGAVGVSRAPGRTRYFQTHFLTAAVRLCDCPGLVFPSRAPPELQVLAGVYPITAWYFSVPGPGRAVPHFHSVHRSWQGCTPLPRGISLSQVLAGVYPITP
SIO_010081: GNL1
subclass of: SO_0000673
so part of: GNL1
location: join(195539..195590,196276..196299,196667..196784,197563..197693,198503..198651,198758..198829,199982..200174,200805..200903,202089..202325,202591..202769,203217..203387)
location: region:195539-203387:1
so has part: feature:195539-195590:1:exon
so has part: feature:196276-196299:1:exon
so has part: feature:196667-196784:1:exon
so has part: feature:197563-197693:1:exon
so has part: feature:198503-198651:1:exon
so has part: feature:198758-198829:1:exon
so has part: feature:199982-200174:1:exon
so has part: feature:200805-200903:1:exon
so has part: feature:202089-202325:1:exon
so has part: feature:202591-202769:1:exon
so has part: feature:203217-203387:1:exon

XP_041568668.1
type: Protein
SIO_000068: ncbiprotein

position:203387:1
position: 203387
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:195539-195590:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:196276-196299:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:196667-196784:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:197563-197693:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:198503-198651:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:198758-198829:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:199982-200174:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:200805-200903:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:202089-202325:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:202591-202769:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:203217-203387:1:exon

RPP21
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: RPP21
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(205566..209012)
location: region:205566-209012:-1
so has part: feature:205566-209012:-1:exon
subclass of: SO_0000010

115492263
type: Gene
SIO_000068: ncbigene

position:205566:-1
position: 205566
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:209012:-1
position: 209012
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:205566-209012:-1:exon

RPP21
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: RPP21
product: ribonuclease P/MRP subunit p21, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XM_041712774.1
SIO_010081: RPP21
subclass of: SO_0000673
so part of: RPP21
location: complement(join(205566..205647,205744..205893,206340..206422,207276..207367,208392..208568,208959..209012))
location: region:205566-209012:-1
so has part: feature:208959-209012:-1:exon
so has part: feature:208392-208568:-1:exon
so has part: feature:207276-207367:-1:exon
so has part: feature:206340-206422:-1:exon
so has part: feature:205744-205893:-1:exon
so has part: feature:205566-205647:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:208959-209012:-1:exon

position:208959:-1
position: 208959
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:208392-208568:-1:exon

position:208392:-1
position: 208392
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:208568:-1
position: 208568
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:207276-207367:-1:exon

position:207276:-1
position: 207276
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:207367:-1
position: 207367
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:206340-206422:-1:exon

position:206340:-1
position: 206340
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:206422:-1
position: 206422
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:205744-205893:-1:exon

position:205744:-1
position: 205744
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:205893:-1
position: 205893
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:205566-205647:-1:exon

position:205647:-1
position: 205647
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

RPP21
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: RPP21
product: ribonuclease P/MRP subunit p21, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XM_041712773.1
SIO_010081: RPP21
subclass of: SO_0000673
so part of: RPP21
location: complement(join(205566..205647,205744..205893,206340..206422,207276..207367,208392..208605,208959..209006))
location: region:205566-209006:-1
so has part: feature:208959-209006:-1:exon
so has part: feature:208392-208605:-1:exon
so has part: feature:207276-207367:-1:exon
so has part: feature:206340-206422:-1:exon
so has part: feature:205744-205893:-1:exon
so has part: feature:205566-205647:-1:exon

position:209006:-1
position: 209006
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:208959-209006:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:208392-208605:-1:exon

position:208605:-1
position: 208605
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:207276-207367:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:206340-206422:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:205744-205893:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:205566-205647:-1:exon

RPP21
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: RPP21
product: ribonuclease P/MRP subunit p21, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 37 samples with support for all annotated introns
transcript id: XM_041712775.1
SIO_010081: RPP21
subclass of: SO_0000673
so part of: RPP21
location: complement(join(205566..205647,205744..205792,205823..205893,206340..206422,207276..207367,208392..208812))
location: region:205566-208812:-1
so has part: feature:208392-208812:-1:exon
so has part: feature:207276-207367:-1:exon
so has part: feature:206340-206422:-1:exon
so has part: feature:205823-205893:-1:exon
so has part: feature:205744-205792:-1:exon
so has part: feature:205566-205647:-1:exon

position:208812:-1
position: 208812
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:208392-208812:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:207276-207367:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:206340-206422:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:205823-205893:-1:exon

position:205823:-1
position: 205823
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:205744-205792:-1:exon

position:205792:-1
position: 205792
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:205566-205647:-1:exon

RPP21
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 59729
gene: RPP21
product: ribonuclease P/MRP subunit p21, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 105 samples with support for all annotated introns
transcript id: XR_005978543.1
SIO_010081: RPP21
so part of: RPP21
location: complement(join(205566..205647,205744..205893,206340..206422,208392..208807))
location: region:205566-208807:-1
so has part: feature:208392-208807:-1:exon
so has part: feature:206340-206422:-1:exon
so has part: feature:205744-205893:-1:exon
so has part: feature:205566-205647:-1:exon

position:208807:-1
position: 208807
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:208392-208807:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:206340-206422:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:205744-205893:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:205566-205647:-1:exon

RPP21
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: RPP21
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ribonuclease P protein subunit p21 isoform X2
translation: MAAPVRDREALQRLNFLFQAAHWAQRRSPGLARFLLRTQRAAARRLVLRMAPGVKRRLCRRCCSLLLPGEGSGTRLRGRGQPRLVLRCLTCGRGRRYLCPPEPRPPEPRPPGQDTPTGPSPVL
SIO_010081: RPP21
subclass of: SO_0000673
so part of: RPP21
location: complement(join(205628..205647,205744..205792,205823..205893,206340..206422,207276..207367,208392..208448))
location: region:205628-208448:-1
so has part: feature:208392-208448:-1:exon
so has part: feature:207276-207367:-1:exon
so has part: feature:206340-206422:-1:exon
so has part: feature:205823-205893:-1:exon
so has part: feature:205744-205792:-1:exon
so has part: feature:205628-205647:-1:exon

XP_041568709.1
type: Protein
SIO_000068: ncbiprotein

position:205628:-1
position: 205628
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:208448:-1
position: 208448
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:208392-208448:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:207276-207367:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:206340-206422:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:205823-205893:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:205744-205792:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:205628-205647:-1:exon

RPP21
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: RPP21
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ribonuclease P protein subunit p21 isoform X1
translation: MAAPVRDREALQRLNFLFQAAHWAQRRSPGLARFLLRTQRAAARRLVLRMAPGVKRRLCRRCCSLLLPGEGSGTRLRGRGQPRLVLRCLTCGRGRRYLCPPEPRPPEPRPPEPRPPEPRPPGQDTPTGPSPVL
SIO_010081: RPP21
subclass of: SO_0000673
so part of: RPP21
location: complement(join(205628..205647,205744..205893,206340..206422,207276..207367,208392..208448))
location: region:205628-208448:-1
so has part: feature:208392-208448:-1:exon
so has part: feature:207276-207367:-1:exon
so has part: feature:206340-206422:-1:exon
so has part: feature:205744-205893:-1:exon
so has part: feature:205628-205647:-1:exon

XP_041568707.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:208392-208448:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:207276-207367:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:206340-206422:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:205744-205893:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:205628-205647:-1:exon

RPP21
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: RPP21
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ribonuclease P protein subunit p21 isoform X1
translation: MAAPVRDREALQRLNFLFQAAHWAQRRSPGLARFLLRTQRAAARRLVLRMAPGVKRRLCRRCCSLLLPGEGSGTRLRGRGQPRLVLRCLTCGRGRRYLCPPEPRPPEPRPPEPRPPEPRPPGQDTPTGPSPVL
SIO_010081: RPP21
subclass of: SO_0000673
so part of: RPP21
location: complement(join(205628..205647,205744..205893,206340..206422,207276..207367,208392..208448))
location: region:205628-208448:-1
so has part: feature:208392-208448:-1:exon
so has part: feature:207276-207367:-1:exon
so has part: feature:206340-206422:-1:exon
so has part: feature:205744-205893:-1:exon
so has part: feature:205628-205647:-1:exon

XP_041568708.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:208392-208448:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:207276-207367:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:206340-206422:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:205744-205893:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:205628-205647:-1:exon

RNF39
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: RNF39
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 209200..211153
location: region:209200-211153:1
so has part: feature:209200-211153:1:exon
subclass of: SO_0000010

115492257
type: Gene
SIO_000068: ncbigene

position:209200:1
position: 209200
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:211153:1
position: 211153
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:209200-211153:1:exon

RNF39
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: RNF39
product: ring finger protein 39
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 96 samples with support for all annotated introns
transcript id: XM_041712766.1
SIO_010081: RNF39
subclass of: SO_0000673
so part of: RNF39
location: join(209200..209834,211055..211153)
location: region:209200-211153:1
so has part: feature:209200-209834:1:exon
so has part: feature:211055-211153:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:209200-209834:1:exon

position:209834:1
position: 209834
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:211055-211153:1:exon

position:211055:1
position: 211055
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

RNF39
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: RNF39
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: RING finger protein 39
translation: MSPPAASRGPLAALAAATSCPRCGAALRDPVLLPCEHRCCRRCLLPPMSPMSPMSPGLSPVSPGPPPGWPRCPQCRRPCAPGRVRTAVALAVEARIARRLAGDSGDTGGDSGDRTGDSAGDSTGTPRGRRRTGRTSLGAQLRADAAPPPPTRDPPK
SIO_010081: RNF39
subclass of: SO_0000673
so part of: RNF39
location: join(209428..209834,211055..211118)
location: region:209428-211118:1
so has part: feature:209428-209834:1:exon
so has part: feature:211055-211118:1:exon

XP_041568700.1
type: Protein
SIO_000068: ncbiprotein

position:209428:1
position: 209428
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:211118:1
position: 211118
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:209428-209834:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:211055-211118:1:exon

PPP1R11
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: PPP1R11
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(211156..214080)
location: region:211156-214080:-1
so has part: feature:211156-214080:-1:exon
subclass of: SO_0000010

115492256
type: Gene
SIO_000068: ncbigene

position:211156:-1
position: 211156
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:214080:-1
position: 214080
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:211156-214080:-1:exon

PPP1R11
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: PPP1R11
product: protein phosphatase 1 regulatory inhibitor subunit 11
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 ESTs, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 120 samples with support for all annotated introns
transcript id: XM_030260995.3
SIO_010081: PPP1R11
subclass of: SO_0000673
so part of: PPP1R11
location: complement(join(211156..212198,213198..213306,213511..214080))
location: region:211156-214080:-1
so has part: feature:213511-214080:-1:exon
so has part: feature:213198-213306:-1:exon
so has part: feature:211156-212198:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:213511-214080:-1:exon

position:213511:-1
position: 213511
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:213198-213306:-1:exon

position:213198:-1
position: 213198
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:213306:-1
position: 213306
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:211156-212198:-1:exon

position:212198:-1
position: 212198
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

PPP1R11
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: PPP1R11
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: E3 ubiquitin-protein ligase PPP1R11
translation: MAETAESGGCGTATVTESGTAEPENRSLTLKLRKRKPDKKVEWSSDTVDNEHLGRRSSKCCCIYERPRPFGESSSESEGEGEGEGEGPGVGEGRVGEGRSCGHQNCVRGHQARGHKGGRGPQNPPLPPPRDPPPRRGHGALRGPSPTPPLPHPNTEFGGALGGVGTEISGF
SIO_010081: PPP1R11
subclass of: SO_0000673
so part of: PPP1R11
location: complement(join(211861..212198,213198..213306,213511..213579))
location: region:211861-213579:-1
so has part: feature:213511-213579:-1:exon
so has part: feature:213198-213306:-1:exon
so has part: feature:211861-212198:-1:exon

XP_030116855.3
type: Protein
SIO_000068: ncbiprotein

position:211861:-1
position: 211861
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:213579:-1
position: 213579
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:213511-213579:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:213198-213306:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:211861-212198:-1:exon

LOC116807682
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: LOC116807682
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 212694..213689
location: region:212694-213689:1
so has part: feature:212694-213689:1:exon
subclass of: SO_0000011

116807682
type: Gene
SIO_000068: ncbigene

position:212694:1
position: 212694
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:213689:1
position: 213689
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:212694-213689:1:exon

LOC116807682
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 59729
nc RNA class: lncRNA
gene: LOC116807682
product: uncharacterized LOC116807682
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 28 samples with support for all annotated introns
transcript id: XR_005978559.1
SIO_010081: LOC116807682
subclass of: SO_0000673
so part of: LOC116807682
location: join(212694..212973,213139..213689)
location: region:212694-213689:1
so has part: feature:212694-212973:1:exon
so has part: feature:213139-213689:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:212694-212973:1:exon

position:212973:1
position: 212973
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:213139-213689:1:exon

position:213139:1
position: 213139
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

POLR1H
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: POLR1H
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(213973..218168)
location: region:213973-218168:-1
so has part: feature:213973-218168:-1:exon
subclass of: SO_0000010

115492264
type: Gene
SIO_000068: ncbigene

position:213973:-1
position: 213973
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:218168:-1
position: 218168
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:213973-218168:-1:exon

POLR1H
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: POLR1H
product: RNA polymerase I subunit H, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 88 samples with support for all annotated introns
transcript id: XM_041712777.1
SIO_010081: POLR1H
subclass of: SO_0000673
so part of: POLR1H
location: complement(join(213973..214261,214990..215099,215797..215891,217132..217259,218072..218168))
location: region:213973-218168:-1
so has part: feature:218072-218168:-1:exon
so has part: feature:217132-217259:-1:exon
so has part: feature:215797-215891:-1:exon
so has part: feature:214990-215099:-1:exon
so has part: feature:213973-214261:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:218072-218168:-1:exon

position:218072:-1
position: 218072
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:217132-217259:-1:exon

position:217132:-1
position: 217132
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:217259:-1
position: 217259
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:215797-215891:-1:exon

position:215797:-1
position: 215797
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:215891:-1
position: 215891
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:214990-215099:-1:exon

position:214990:-1
position: 214990
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:215099:-1
position: 215099
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:213973-214261:-1:exon

position:214261:-1
position: 214261
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

POLR1H
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: POLR1H
product: RNA polymerase I subunit H, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 75 samples with support for all annotated introns
transcript id: XM_041712778.1
SIO_010081: POLR1H
subclass of: SO_0000673
so part of: POLR1H
location: complement(join(213973..214261,214990..215099,217132..217352))
location: region:213973-217352:-1
so has part: feature:217132-217352:-1:exon
so has part: feature:214990-215099:-1:exon
so has part: feature:213973-214261:-1:exon

position:217352:-1
position: 217352
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:217132-217352:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:214990-215099:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:213973-214261:-1:exon

POLR1H
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: POLR1H
product: RNA polymerase I subunit H, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 108 samples with support for all annotated introns
transcript id: XM_041712776.1
SIO_010081: POLR1H
subclass of: SO_0000673
so part of: POLR1H
location: complement(join(213973..214261,214990..215099,215797..215891,217132..217351))
location: region:213973-217351:-1
so has part: feature:217132-217351:-1:exon
so has part: feature:215797-215891:-1:exon
so has part: feature:214990-215099:-1:exon
so has part: feature:213973-214261:-1:exon

position:217351:-1
position: 217351
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:217132-217351:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:215797-215891:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:214990-215099:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:213973-214261:-1:exon

POLR1H
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: POLR1H
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: DNA-directed RNA polymerase I subunit RPA12 isoform X2
translation: MEPPGRFRSRPEFCPECGSVLPRPGPAGCQRCPRCGLGLQSSGGQELPPLRPPGNVVPHAADALGRRGADGVLHLSPLQVPGEGRFLKFAFLGNF
SIO_010081: POLR1H
subclass of: SO_0000673
so part of: POLR1H
location: complement(join(214211..214261,214990..215099,217132..217258))
location: region:214211-217258:-1
so has part: feature:217132-217258:-1:exon
so has part: feature:214990-215099:-1:exon
so has part: feature:214211-214261:-1:exon

XP_041568712.1
type: Protein
SIO_000068: ncbiprotein

position:214211:-1
position: 214211
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:217258:-1
position: 217258
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:217132-217258:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:214990-215099:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:214211-214261:-1:exon

POLR1H
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: POLR1H
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: DNA-directed RNA polymerase I subunit RPA12 isoform X1
translation: MEPPGRFRSRPEFCPECGSVLPRPGPAGCQRCPRCGLGLQSSDLGSVPVRSSLSFAAAEWGRGSAGPAPQEGPTVDRSCPRCAHQGMWFHTRQMRSADEGQTVFYTCPRCRFQEKEDS
SIO_010081: POLR1H
subclass of: SO_0000673
so part of: POLR1H
location: complement(join(214237..214261,214990..215099,215797..215891,217132..217258))
location: region:214237-217258:-1
so has part: feature:217132-217258:-1:exon
so has part: feature:215797-215891:-1:exon
so has part: feature:214990-215099:-1:exon
so has part: feature:214237-214261:-1:exon

XP_041568710.1
type: Protein
SIO_000068: ncbiprotein

position:214237:-1
position: 214237
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:217132-217258:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:215797-215891:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:214990-215099:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:214237-214261:-1:exon

POLR1H
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: POLR1H
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: DNA-directed RNA polymerase I subunit RPA12 isoform X1
translation: MEPPGRFRSRPEFCPECGSVLPRPGPAGCQRCPRCGLGLQSSDLGSVPVRSSLSFAAAEWGRGSAGPAPQEGPTVDRSCPRCAHQGMWFHTRQMRSADEGQTVFYTCPRCRFQEKEDS
SIO_010081: POLR1H
subclass of: SO_0000673
so part of: POLR1H
location: complement(join(214237..214261,214990..215099,215797..215891,217132..217258))
location: region:214237-217258:-1
so has part: feature:217132-217258:-1:exon
so has part: feature:215797-215891:-1:exon
so has part: feature:214990-215099:-1:exon
so has part: feature:214237-214261:-1:exon

XP_041568711.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:217132-217258:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:215797-215891:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:214990-215099:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:214237-214261:-1:exon

MGAT1
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: MGAT1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 218332..225181
location: region:218332-225181:1
so has part: feature:218332-225181:1:exon
subclass of: SO_0000010

100223060
type: Gene
SIO_000068: ncbigene

position:218332:1
position: 218332
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:225181:1
position: 225181
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:218332-225181:1:exon

MGAT1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: MGAT1
product: alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 26 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 82 samples with support for all annotated introns
transcript id: XM_030260975.3
SIO_010081: MGAT1
subclass of: SO_0000673
so part of: MGAT1
location: join(218332..218449,219268..219381,223313..225181)
location: region:218332-225181:1
so has part: feature:218332-218449:1:exon
so has part: feature:219268-219381:1:exon
so has part: feature:223313-225181:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:218332-218449:1:exon

position:218449:1
position: 218449
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:219268-219381:1:exon

position:219268:1
position: 219268
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:219381:1
position: 219381
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:223313-225181:1:exon

position:223313:1
position: 223313
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

MGAT1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: MGAT1
product: alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 26 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 34 samples with support for all annotated introns
transcript id: XM_030260976.3
SIO_010081: MGAT1
subclass of: SO_0000673
so part of: MGAT1
location: join(220504..220870,223313..225181)
location: region:220504-225181:1
so has part: feature:220504-220870:1:exon
so has part: feature:223313-225181:1:exon

position:220504:1
position: 220504
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:220504-220870:1:exon

position:220870:1
position: 220870
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:223313-225181:1:exon

MGAT1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: MGAT1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase
translation: MLRQGRRALLAAALFLAWHGLLLLFLWGRPGAPPSARLRAEAAAGEGARLLPAQLLRLAQDAEAELRLQRDLLLQIQRLRRHKPPPKPTQKPTQKPPKPTQNTPRPAEPPVIPVLVLACDRSSVRRCLDKILRYRPSARRFPVIVSQDCGHAETAAVIASYGAAVAHIRQPDLSDVPVPPEHRKFQGYYRISRHYRWALGQVFRTFRYRAAIVVEDDLEVAPDFFEYFQAVLPLLEEDPTLWCASAWNDNGKEGLVDAGRAELLYRTDFFPGLGWLLLAELWDELEPKWPPAFWDDWMRRPEQRRGRACVRPEVSRTMTFGRKGVSHGQFFDQYLKFIKLNDRFVPFTQLDLSYLKREAYERSFLPQVYGAPEIRLEQLQEEPAPGPGPVRLQYRGRDSFKALAKALGLMDDLKSGVPRGGYRGVVSLVCRGRRVFLAPPSDWTGYDPSWS
SIO_010081: MGAT1
subclass of: SO_0000673
so part of: MGAT1
location: 223326..224681
location: region:223326-224681:1
so has part: feature:223326-224681:1:exon

XP_030116835.3
type: Protein
SIO_000068: ncbiprotein

position:223326:1
position: 223326
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:224681:1
position: 224681
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:223326-224681:1:exon

MGAT1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: MGAT1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase
translation: MLRQGRRALLAAALFLAWHGLLLLFLWGRPGAPPSARLRAEAAAGEGARLLPAQLLRLAQDAEAELRLQRDLLLQIQRLRRHKPPPKPTQKPTQKPPKPTQNTPRPAEPPVIPVLVLACDRSSVRRCLDKILRYRPSARRFPVIVSQDCGHAETAAVIASYGAAVAHIRQPDLSDVPVPPEHRKFQGYYRISRHYRWALGQVFRTFRYRAAIVVEDDLEVAPDFFEYFQAVLPLLEEDPTLWCASAWNDNGKEGLVDAGRAELLYRTDFFPGLGWLLLAELWDELEPKWPPAFWDDWMRRPEQRRGRACVRPEVSRTMTFGRKGVSHGQFFDQYLKFIKLNDRFVPFTQLDLSYLKREAYERSFLPQVYGAPEIRLEQLQEEPAPGPGPVRLQYRGRDSFKALAKALGLMDDLKSGVPRGGYRGVVSLVCRGRRVFLAPPSDWTGYDPSWS
SIO_010081: MGAT1
subclass of: SO_0000673
so part of: MGAT1
location: 223326..224681
location: region:223326-224681:1
so has part: feature:223326-224681:1:exon

XP_030116836.3
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:223326-224681:1:exon

LOC121468721
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: LOC121468721
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 227157..231792
location: region:227157-231792:1
so has part: feature:227157-231792:1:exon
subclass of: SO_0000010

121468721
type: Gene
SIO_000068: ncbigene

position:227157:1
position: 227157
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:231792:1
position: 231792
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:227157-231792:1:exon

LOC121468721
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: LOC121468721
product: zinc finger protein 48-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 43 samples with support for all annotated introns
transcript id: XM_041712758.1
SIO_010081: LOC121468721
subclass of: SO_0000673
so part of: LOC121468721
location: join(227157..227270,229515..229628,230204..230803,230909..231792)
location: region:227157-231792:1
so has part: feature:227157-227270:1:exon
so has part: feature:229515-229628:1:exon
so has part: feature:230204-230803:1:exon
so has part: feature:230909-231792:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:227157-227270:1:exon

position:227270:1
position: 227270
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:229515-229628:1:exon

position:229515:1
position: 229515
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:229628:1
position: 229628
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:230204-230803:1:exon

position:230204:1
position: 230204
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:230803:1
position: 230803
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:230909-231792:1:exon

position:230909:1
position: 230909
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC121468721
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: LOC121468721
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: zinc finger protein 48-like
translation: MQESYEALMLLDFPVARPNLVSRPEPEEELGVPDPNDSKEWQILRVAPPDSAPPSDDDSAPADDSAPEAEVSAPPPTPDSLLLLLLPSPSPSPPPAPPLPPPGGRGSRRGRGLRAHLGRRAHLGGFGHAPPPATPTQRPRPPGRGQRGRGQRGRGAHLSPLTCAECGRGFRYSSALLKHRHAHGEEPEGRRRRRRRRKAAPGHTCGRCGAGLGRGHALLAHLSGHAPDTPLRWDTPPGCDTPTGDTPLTCDTPLTCDTPEVGATPLTCADCGRGFGGSSALIRHQRLHLG
SIO_010081: LOC121468721
subclass of: SO_0000673
so part of: LOC121468721
location: join(227237..227270,229515..229628,230204..230803,230909..231033)
location: region:227237-231033:1
so has part: feature:227237-227270:1:exon
so has part: feature:229515-229628:1:exon
so has part: feature:230204-230803:1:exon
so has part: feature:230909-231033:1:exon

XP_041568692.1
type: Protein
SIO_000068: ncbiprotein

position:227237:1
position: 227237
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:231033:1
position: 231033
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:227237-227270:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:229515-229628:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:230204-230803:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:230909-231033:1:exon

AGPAT1
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: AGPAT1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(236260..245051)
location: region:236260-245051:-1
so has part: feature:236260-245051:-1:exon
subclass of: SO_0000010

121468716
type: Gene
SIO_000068: ncbigene

position:236260:-1
position: 236260
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:245051:-1
position: 245051
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:236260-245051:-1:exon

AGPAT1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: AGPAT1
product: 1-acylglycerol-3-phosphate O-acyltransferase 1, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 1 long SRA read, 16 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 15 samples with support for all annotated introns
transcript id: XM_041712751.1
SIO_010081: AGPAT1
subclass of: SO_0000673
so part of: AGPAT1
location: complement(join(236260..237646,238310..238382,238947..239042,239897..240072,241137..241270,242480..242669,244985..245051))
location: region:236260-245051:-1
so has part: feature:244985-245051:-1:exon
so has part: feature:242480-242669:-1:exon
so has part: feature:241137-241270:-1:exon
so has part: feature:239897-240072:-1:exon
so has part: feature:238947-239042:-1:exon
so has part: feature:238310-238382:-1:exon
so has part: feature:236260-237646:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:244985-245051:-1:exon

position:244985:-1
position: 244985
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:242480-242669:-1:exon

position:242480:-1
position: 242480
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:242669:-1
position: 242669
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:241137-241270:-1:exon

position:241137:-1
position: 241137
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:241270:-1
position: 241270
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:239897-240072:-1:exon

position:239897:-1
position: 239897
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:240072:-1
position: 240072
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:238947-239042:-1:exon

position:238947:-1
position: 238947
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:239042:-1
position: 239042
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:238310-238382:-1:exon

position:238310:-1
position: 238310
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:238382:-1
position: 238382
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:236260-237646:-1:exon

position:237646:-1
position: 237646
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

AGPAT1
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 59729
gene: AGPAT1
product: 1-acylglycerol-3-phosphate O-acyltransferase 1, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 16 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 45 samples with support for all annotated introns
transcript id: XR_005978542.1
SIO_010081: AGPAT1
so part of: AGPAT1
location: complement(join(236260..236675,236886..237646,238310..238382,238947..239042,239897..240072,241137..241270,242480..244020))
location: region:236260-244020:-1
so has part: feature:242480-244020:-1:exon
so has part: feature:241137-241270:-1:exon
so has part: feature:239897-240072:-1:exon
so has part: feature:238947-239042:-1:exon
so has part: feature:238310-238382:-1:exon
so has part: feature:236886-237646:-1:exon
so has part: feature:236260-236675:-1:exon

position:244020:-1
position: 244020
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:242480-244020:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:241137-241270:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:239897-240072:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:238947-239042:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:238310-238382:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:236886-237646:-1:exon

position:236886:-1
position: 236886
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:236260-236675:-1:exon

position:236675:-1
position: 236675
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

AGPAT1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: AGPAT1
product: 1-acylglycerol-3-phosphate O-acyltransferase 1, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 58 samples with support for all annotated introns
transcript id: XM_041712753.1
SIO_010081: AGPAT1
subclass of: SO_0000673
so part of: AGPAT1
location: complement(join(236260..237646,238310..238382,238947..239042,239897..240072,241137..241270,241795..242159))
location: region:236260-242159:-1
so has part: feature:241795-242159:-1:exon
so has part: feature:241137-241270:-1:exon
so has part: feature:239897-240072:-1:exon
so has part: feature:238947-239042:-1:exon
so has part: feature:238310-238382:-1:exon
so has part: feature:236260-237646:-1:exon

position:242159:-1
position: 242159
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:241795-242159:-1:exon

position:241795:-1
position: 241795
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:241137-241270:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:239897-240072:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:238947-239042:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:238310-238382:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:236260-237646:-1:exon

AGPAT1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: AGPAT1
product: 1-acylglycerol-3-phosphate O-acyltransferase 1, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 98 samples with support for all annotated introns
transcript id: XM_041712752.1
SIO_010081: AGPAT1
subclass of: SO_0000673
so part of: AGPAT1
location: complement(join(236260..237646,238310..238382,238947..239042,239897..240072,241137..241270,241628..242159))
location: region:236260-242159:-1
so has part: feature:241628-242159:-1:exon
so has part: feature:241137-241270:-1:exon
so has part: feature:239897-240072:-1:exon
so has part: feature:238947-239042:-1:exon
so has part: feature:238310-238382:-1:exon
so has part: feature:236260-237646:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:241628-242159:-1:exon

position:241628:-1
position: 241628
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:241137-241270:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:239897-240072:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:238947-239042:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:238310-238382:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:236260-237646:-1:exon

AGPAT1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: AGPAT1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: 1-acyl-sn-glycerol-3-phosphate acyltransferase alpha isoform X1
translation: MEVTLGAAVAALALLLLPLLYERCGSFRFFCKMGFYNGWILLLALLAIPLCALRGRDVENMKIIRGLMQHVKRLYGIRMEVRGAQHFPPRQPYVVVSNHQSSLDLMGMMEVLPDRCVPIAKRELLYMGAVGVVCWLGGIIFIDRKRTHDAISVMAEAAHTMLSQDVRVWVFPEGTRNHSGSMLPFKRGAFHLAVQAQVPVVPIVISSYQHFYSKRERRFTPGHCVIQVLPPLPTSGLGPAEVPALTERVRGAMLRTFERLSAELRPRSDRGSDQGSDPHTDHLTDRPSDHLSDHGSDRLSDRPSDHQTDPGSDPQNDPWSDSTAMSDHWSDHQSDQRSDHQSDQRSDHRSDPQSDHRSDPMAMSDQWSNHQNNRQSDPRSDHQSDPWSDPWSDPQSDQLGPVATSDRQSDPQSDPTATSDHQSDHWSDPWSDPQRPTVPHGGTPQ
SIO_010081: AGPAT1
subclass of: SO_0000673
so part of: AGPAT1
location: complement(join(236973..237646,238310..238382,238947..239042,239897..240072,241137..241270,242480..242664))
location: region:236973-242664:-1
so has part: feature:242480-242664:-1:exon
so has part: feature:241137-241270:-1:exon
so has part: feature:239897-240072:-1:exon
so has part: feature:238947-239042:-1:exon
so has part: feature:238310-238382:-1:exon
so has part: feature:236973-237646:-1:exon

XP_041568685.1
type: Protein
SIO_000068: ncbiprotein

position:236973:-1
position: 236973
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:242664:-1
position: 242664
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:242480-242664:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:241137-241270:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:239897-240072:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:238947-239042:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:238310-238382:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:236973-237646:-1:exon

AGPAT1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: AGPAT1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: 1-acyl-sn-glycerol-3-phosphate acyltransferase alpha isoform X3
translation: MKIIRGLMQHVKRLYGIRMEVRGAQHFPPRQPYVVVSNHQSSLDLMGMMEVLPDRCVPIAKRELLYMGAVGVVCWLGGIIFIDRKRTHDAISVMAEAAHTMLSQDVRVWVFPEGTRNHSGSMLPFKRGAFHLAVQAQVPVVPIVISSYQHFYSKRERRFTPGHCVIQVLPPLPTSGLGPAEVPALTERVRGAMLRTFERLSAELRPRSDRGSDQGSDPHTDHLTDRPSDHLSDHGSDRLSDRPSDHQTDPGSDPQNDPWSDSTAMSDHWSDHQSDQRSDHQSDQRSDHRSDPQSDHRSDPMAMSDQWSNHQNNRQSDPRSDHQSDPWSDPWSDPQSDQLGPVATSDRQSDPQSDPTATSDHQSDHWSDPWSDPQRPTVPHGGTPQ
SIO_010081: AGPAT1
subclass of: SO_0000673
so part of: AGPAT1
location: complement(join(236973..237646,238310..238382,238947..239042,239897..240072,241137..241270,241795..241799))
location: region:236973-241799:-1
so has part: feature:241795-241799:-1:exon
so has part: feature:241137-241270:-1:exon
so has part: feature:239897-240072:-1:exon
so has part: feature:238947-239042:-1:exon
so has part: feature:238310-238382:-1:exon
so has part: feature:236973-237646:-1:exon

XP_041568687.1
type: Protein
SIO_000068: ncbiprotein

position:241799:-1
position: 241799
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:241795-241799:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:241137-241270:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:239897-240072:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:238947-239042:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:238310-238382:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:236973-237646:-1:exon

AGPAT1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: AGPAT1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: 1-acyl-sn-glycerol-3-phosphate acyltransferase alpha isoform X2
translation: MKIIRGLMQHVKRLYGIRMEVRGAQHFPPRQPYVVVSNHQSSLDLMGMMEVLPDRCVPIAKRELLYMGAVGVVCWLGGIIFIDRKRTHDAISVMAEAAHTMLSQDVRVWVFPEGTRNHSGSMLPFKRGAFHLAVQAQVPVVPIVISSYQHFYSKRERRFTPGHCVIQVLPPLPTSGLGPAEVPALTERVRGAMLRTFERLSAELRPRSDRGSDQGSDPHTDHLTDRPSDHLSDHGSDRLSDRPSDHQTDPGSDPQNDPWSDSTAMSDHWSDHQSDQRSDHQSDQRSDHRSDPQSDHRSDPMAMSDQWSNHQNNRQSDPRSDHQSDPWSDPWSDPQSDQLGPVATSDRQSDPQSDPTATSDHQSDHWSDPWSDPQRPTVPHGGTPQ
SIO_010081: AGPAT1
subclass of: SO_0000673
so part of: AGPAT1
location: complement(join(236973..237646,238310..238382,238947..239042,239897..240072,241137..241270,241628..241632))
location: region:236973-241632:-1
so has part: feature:241628-241632:-1:exon
so has part: feature:241137-241270:-1:exon
so has part: feature:239897-240072:-1:exon
so has part: feature:238947-239042:-1:exon
so has part: feature:238310-238382:-1:exon
so has part: feature:236973-237646:-1:exon

XP_041568686.1
type: Protein
SIO_000068: ncbiprotein

position:241632:-1
position: 241632
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:241628-241632:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:241137-241270:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:239897-240072:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:238947-239042:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:238310-238382:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:236973-237646:-1:exon

FKBPL
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: FKBPL
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 245325..250038
location: region:245325-250038:1
so has part: feature:245325-250038:1:exon
subclass of: SO_0000010

121468714
type: Gene
SIO_000068: ncbigene

position:245325:1
position: 245325
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:250038:1
position: 250038
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:245325-250038:1:exon

FKBPL
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: FKBPL
product: FKBP prolyl isomerase like, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 17 samples with support for all annotated introns
transcript id: XM_041712736.1
SIO_010081: FKBPL
subclass of: SO_0000673
so part of: FKBPL
location: join(245325..245383,247128..250038)
location: region:245325-250038:1
so has part: feature:245325-245383:1:exon
so has part: feature:247128-250038:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:245325-245383:1:exon

position:245383:1
position: 245383
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:247128-250038:1:exon

position:247128:1
position: 247128
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

FKBPL
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: FKBPL
product: FKBP prolyl isomerase like, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 78 samples with support for all annotated introns
transcript id: XM_041712735.1
SIO_010081: FKBPL
subclass of: SO_0000673
so part of: FKBPL
location: join(246841..246898,247128..250038)
location: region:246841-250038:1
so has part: feature:246841-246898:1:exon
so has part: feature:247128-250038:1:exon

position:246841:1
position: 246841
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:246841-246898:1:exon

position:246898:1
position: 246898
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:247128-250038:1:exon

FKBPL
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: FKBPL
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: FK506-binding protein-like
translation: MEGAAAANEGAAPRGGANEDKEAEEAAANQQRDAGSAAANGNVPLKGSANERTRSCGLPNQDAETREATNGGEDPQAANEDTGHKAAANLNTAHKAPANENPAPSPAANQQQAPPPQHRADDLAPLAAAANQAREPWDWSLEEAWLRTPEGEGLETWGVELEAFEAEPDEEEAELDALEAELVRRGPVAQGAELITQGVAVKPQGAELKAQGAELITQGVAVKPQGAELEPCAVNPKDPGAGFEAQGAEFEAQGAGFEAQGAGFKAQGAGFEAQGAEFEAQGAGFEAQGAEPSPPNPVSGAWQPSPDGAWWKLRARRGRGLARPGPGSLCRVRLRVPVSGRCPWGAPAVPCGRWLSVRLGEAEGRWSALLDAALETMAAGELAWLRPRGDDDDGSTAVLLVRLGRFAPAPPFWAAPPAARWHAVEAGLARGAALAANGQDFSAVRALARALRRAVAAAGPAPLPERAAAPQGRAARGAGGGAAALGRPAAAAGNAGRALALRPAHLEARYARGVALAAMRDLEAARQELLAVLRARPGHGGARRELGRVRGAARERDAQLGARLGKMFA
SIO_010081: FKBPL
subclass of: SO_0000673
so part of: FKBPL
location: 247154..248863
location: region:247154-248863:1
so has part: feature:247154-248863:1:exon

XP_041568669.1
type: Protein
SIO_000068: ncbiprotein

position:247154:1
position: 247154
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:248863:1
position: 248863
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:247154-248863:1:exon

FKBPL
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: FKBPL
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: FK506-binding protein-like
translation: MEGAAAANEGAAPRGGANEDKEAEEAAANQQRDAGSAAANGNVPLKGSANERTRSCGLPNQDAETREATNGGEDPQAANEDTGHKAAANLNTAHKAPANENPAPSPAANQQQAPPPQHRADDLAPLAAAANQAREPWDWSLEEAWLRTPEGEGLETWGVELEAFEAEPDEEEAELDALEAELVRRGPVAQGAELITQGVAVKPQGAELKAQGAELITQGVAVKPQGAELEPCAVNPKDPGAGFEAQGAEFEAQGAGFEAQGAGFKAQGAGFEAQGAEFEAQGAGFEAQGAEPSPPNPVSGAWQPSPDGAWWKLRARRGRGLARPGPGSLCRVRLRVPVSGRCPWGAPAVPCGRWLSVRLGEAEGRWSALLDAALETMAAGELAWLRPRGDDDDGSTAVLLVRLGRFAPAPPFWAAPPAARWHAVEAGLARGAALAANGQDFSAVRALARALRRAVAAAGPAPLPERAAAPQGRAARGAGGGAAALGRPAAAAGNAGRALALRPAHLEARYARGVALAAMRDLEAARQELLAVLRARPGHGGARRELGRVRGAARERDAQLGARLGKMFA
SIO_010081: FKBPL
subclass of: SO_0000673
so part of: FKBPL
location: 247154..248863
location: region:247154-248863:1
so has part: feature:247154-248863:1:exon

XP_041568670.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:247154-248863:1:exon

LOC121468727
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: LOC121468727
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(251268..254433)
location: region:251268-254433:-1
so has part: feature:251268-254433:-1:exon
subclass of: SO_0000010

121468727
type: Gene
SIO_000068: ncbigene

position:251268:-1
position: 251268
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:254433:-1
position: 254433
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:251268-254433:-1:exon

LOC121468727
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: LOC121468727
product: proline-rich transmembrane protein 1-like
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 91 samples with support for all annotated introns
transcript id: XM_041712781.1
SIO_010081: LOC121468727
subclass of: SO_0000673
so part of: LOC121468727
location: complement(join(251268..251550,252342..252545,253459..253902,254266..254433))
location: region:251268-254433:-1
so has part: feature:254266-254433:-1:exon
so has part: feature:253459-253902:-1:exon
so has part: feature:252342-252545:-1:exon
so has part: feature:251268-251550:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:254266-254433:-1:exon

position:254266:-1
position: 254266
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:253459-253902:-1:exon

position:253459:-1
position: 253459
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:253902:-1
position: 253902
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:252342-252545:-1:exon

position:252342:-1
position: 252342
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:252545:-1
position: 252545
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:251268-251550:-1:exon

position:251550:-1
position: 251550
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC121468727
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: LOC121468727
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: proline-rich transmembrane protein 1-like
translation: MAAEKPGGPDGAPHSSPPPYGPPAPPPGPILGGGGASTLPRGFPGAATLPRGWGGGGGAAATLPRGLAGGGAGGGGGGGGGAFHAATLPRPPPPPPPPRPSPPAQPYGGGGAGPSPTPPAPLGFGAPPPPPPFALQVPPPAGGAAYLPLYPGGTTFGAAPPGPLPGSVGGAGGAPLGPPLGLGGAEGPPRGSPPHDYLPIAVLTTLCCFWPTGVVAIVKAVQVRTAVARGDIVSAEIASREARNFSFISLAVGIAATVLCTILTVVIIIAAQHQDNDWDP
SIO_010081: LOC121468727
subclass of: SO_0000673
so part of: LOC121468727
location: complement(join(251374..251550,252342..252545,253459..253902,254266..254284))
location: region:251374-254284:-1
so has part: feature:254266-254284:-1:exon
so has part: feature:253459-253902:-1:exon
so has part: feature:252342-252545:-1:exon
so has part: feature:251374-251550:-1:exon

XP_041568715.1
type: Protein
SIO_000068: ncbiprotein

position:251374:-1
position: 251374
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:254284:-1
position: 254284
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:254266-254284:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:253459-253902:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:252342-252545:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:251374-251550:-1:exon

PPT2
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: PPT2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 254955..260236
location: region:254955-260236:1
so has part: feature:254955-260236:1:exon
subclass of: SO_0000010

121468720
type: Gene
SIO_000068: ncbigene

position:254955:1
position: 254955
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:260236:1
position: 260236
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:254955-260236:1:exon

PPT2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: PPT2
product: palmitoyl-protein thioesterase 2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 36 samples with support for all annotated introns
transcript id: XM_041712757.1
SIO_010081: PPT2
subclass of: SO_0000673
so part of: PPT2
location: join(254955..255089,255215..255402,256332..256485,257182..257277,257609..257716,258165..258248,258358..258442,259052..259106,260084..260236)
location: region:254955-260236:1
so has part: feature:254955-255089:1:exon
so has part: feature:255215-255402:1:exon
so has part: feature:256332-256485:1:exon
so has part: feature:257182-257277:1:exon
so has part: feature:257609-257716:1:exon
so has part: feature:258165-258248:1:exon
so has part: feature:258358-258442:1:exon
so has part: feature:259052-259106:1:exon
so has part: feature:260084-260236:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:254955-255089:1:exon

position:255089:1
position: 255089
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:255215-255402:1:exon

position:255215:1
position: 255215
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:255402:1
position: 255402
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:256332-256485:1:exon

position:256332:1
position: 256332
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:256485:1
position: 256485
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:257182-257277:1:exon

position:257182:1
position: 257182
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:257277:1
position: 257277
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:257609-257716:1:exon

position:257609:1
position: 257609
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:257716:1
position: 257716
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:258165-258248:1:exon

position:258165:1
position: 258165
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:258248:1
position: 258248
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:258358-258442:1:exon

position:258358:1
position: 258358
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:258442:1
position: 258442
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:259052-259106:1:exon

position:259052:1
position: 259052
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:259106:1
position: 259106
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:260084-260236:1:exon

position:260084:1
position: 260084
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

PPT2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: PPT2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: lysosomal thioesterase PPT2
translation: MPRAPWRGGGGGAALPLPLLLLLLPPLPPPGARGAPFRPVVIVHGLFDSPGDFRHLRQFINESHPGAEVTVLDLFDRGASLRPLWLQVDGFRRALTPIMANAARGVHLLGYSQGGLICRALLATTPDHNVQSFISLAAPQMGQYGDTDYLKWLFPRHMKSNLYRLCYTPLGQGVSICNYWNDPHHRDLYLNSSDFLALLNDERLHPNASDWKRNLLRIQRLVLIGGPDDGVITPWQSSLFGFYDANETVRDMEAQPVFLQDTFGLRSLWARGALGGCAVPGVPHTAWHSHRGVYEKCIRPWLT
SIO_010081: PPT2
subclass of: SO_0000673
so part of: PPT2
location: join(255217..255402,256332..256485,257182..257277,257609..257716,258165..258248,258358..258442,259052..259106,260084..260227)
location: region:255217-260227:1
so has part: feature:255217-255402:1:exon
so has part: feature:256332-256485:1:exon
so has part: feature:257182-257277:1:exon
so has part: feature:257609-257716:1:exon
so has part: feature:258165-258248:1:exon
so has part: feature:258358-258442:1:exon
so has part: feature:259052-259106:1:exon
so has part: feature:260084-260227:1:exon

XP_041568691.1
type: Protein
SIO_000068: ncbiprotein

position:255217:1
position: 255217
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:260227:1
position: 260227
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:255217-255402:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:256332-256485:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:257182-257277:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:257609-257716:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:258165-258248:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:258358-258442:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:259052-259106:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:260084-260227:1:exon

EHMT2
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: EHMT2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(261629..283357)
location: region:261629-283357:-1
so has part: feature:261629-283357:-1:exon
subclass of: SO_0000010

121468706
type: Gene
SIO_000068: ncbigene

position:261629:-1
position: 261629
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:283357:-1
position: 283357
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:261629-283357:-1:exon

EHMT2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: EHMT2
product: euchromatic histone lysine methyltransferase 2, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
transcript id: XM_041712702.1
SIO_010081: EHMT2
subclass of: SO_0000673
so part of: EHMT2
location: complement(join(261629..261802,262511..262686,263303..263381,264036..264122,264835..264950,265723..265800,266095..266239,266841..267008,267446..267480,267796..267915,268967..269071,269356..269457,269960..270082,271086..271192,271552..271634,272381..272566,273543..273757,275641..275784,276797..276918,277840..277941,278447..278555,279233..279385,280236..280355,281064..281152,281838..281916,282063..282377,283226..283357))
location: region:261629-283357:-1
so has part: feature:283226-283357:-1:exon
so has part: feature:282063-282377:-1:exon
so has part: feature:281838-281916:-1:exon
so has part: feature:281064-281152:-1:exon
so has part: feature:280236-280355:-1:exon
so has part: feature:279233-279385:-1:exon
so has part: feature:278447-278555:-1:exon
so has part: feature:277840-277941:-1:exon
so has part: feature:276797-276918:-1:exon
so has part: feature:275641-275784:-1:exon
so has part: feature:273543-273757:-1:exon
so has part: feature:272381-272566:-1:exon
so has part: feature:271552-271634:-1:exon
so has part: feature:271086-271192:-1:exon
so has part: feature:269960-270082:-1:exon
so has part: feature:269356-269457:-1:exon
so has part: feature:268967-269071:-1:exon
so has part: feature:267796-267915:-1:exon
so has part: feature:267446-267480:-1:exon
so has part: feature:266841-267008:-1:exon
so has part: feature:266095-266239:-1:exon
so has part: feature:265723-265800:-1:exon
so has part: feature:264835-264950:-1:exon
so has part: feature:264036-264122:-1:exon
so has part: feature:263303-263381:-1:exon
so has part: feature:262511-262686:-1:exon
so has part: feature:261629-261802:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:283226-283357:-1:exon

position:283226:-1
position: 283226
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:282063-282377:-1:exon

position:282063:-1
position: 282063
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:282377:-1
position: 282377
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:281838-281916:-1:exon

position:281838:-1
position: 281838
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:281916:-1
position: 281916
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:281064-281152:-1:exon

position:281064:-1
position: 281064
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:281152:-1
position: 281152
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:280236-280355:-1:exon

position:280236:-1
position: 280236
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:280355:-1
position: 280355
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:279233-279385:-1:exon

position:279233:-1
position: 279233
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:279385:-1
position: 279385
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:278447-278555:-1:exon

position:278447:-1
position: 278447
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:278555:-1
position: 278555
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:277840-277941:-1:exon

position:277840:-1
position: 277840
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:277941:-1
position: 277941
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:276797-276918:-1:exon

position:276797:-1
position: 276797
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:276918:-1
position: 276918
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:275641-275784:-1:exon

position:275641:-1
position: 275641
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:275784:-1
position: 275784
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:273543-273757:-1:exon

position:273543:-1
position: 273543
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:273757:-1
position: 273757
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:272381-272566:-1:exon

position:272381:-1
position: 272381
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:272566:-1
position: 272566
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:271552-271634:-1:exon

position:271552:-1
position: 271552
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:271634:-1
position: 271634
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:271086-271192:-1:exon

position:271086:-1
position: 271086
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:271192:-1
position: 271192
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:269960-270082:-1:exon

position:269960:-1
position: 269960
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:270082:-1
position: 270082
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:269356-269457:-1:exon

position:269356:-1
position: 269356
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:269457:-1
position: 269457
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:268967-269071:-1:exon

position:268967:-1
position: 268967
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:269071:-1
position: 269071
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:267796-267915:-1:exon

position:267796:-1
position: 267796
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:267915:-1
position: 267915
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:267446-267480:-1:exon

position:267446:-1
position: 267446
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:267480:-1
position: 267480
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:266841-267008:-1:exon

position:266841:-1
position: 266841
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:267008:-1
position: 267008
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:266095-266239:-1:exon

position:266095:-1
position: 266095
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:266239:-1
position: 266239
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 22
SIO_000628: feature:265723-265800:-1:exon

position:265723:-1
position: 265723
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:265800:-1
position: 265800
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 23
SIO_000628: feature:264835-264950:-1:exon

position:264835:-1
position: 264835
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:264950:-1
position: 264950
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 24
SIO_000628: feature:264036-264122:-1:exon

position:264036:-1
position: 264036
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:264122:-1
position: 264122
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 25
SIO_000628: feature:263303-263381:-1:exon

position:263303:-1
position: 263303
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:263381:-1
position: 263381
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 26
SIO_000628: feature:262511-262686:-1:exon

position:262511:-1
position: 262511
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:262686:-1
position: 262686
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 27
SIO_000628: feature:261629-261802:-1:exon

position:261802:-1
position: 261802
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

EHMT2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: EHMT2
product: euchromatic histone lysine methyltransferase 2, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 ESTs, 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
transcript id: XM_041712701.1
SIO_010081: EHMT2
subclass of: SO_0000673
so part of: EHMT2
location: complement(join(261629..261802,262511..262686,263303..263381,264036..264122,264835..264950,265723..265800,266095..266239,266841..267008,267761..267915,268967..269071,269356..269457,269960..270082,271086..271192,271552..271634,272381..272566,273543..273757,275641..275784,276797..276918,277840..277941,278447..278555,279233..279385,280236..280355,281064..281152,281838..281916,282063..282377,283226..283357))
location: region:261629-283357:-1
so has part: feature:283226-283357:-1:exon
so has part: feature:282063-282377:-1:exon
so has part: feature:281838-281916:-1:exon
so has part: feature:281064-281152:-1:exon
so has part: feature:280236-280355:-1:exon
so has part: feature:279233-279385:-1:exon
so has part: feature:278447-278555:-1:exon
so has part: feature:277840-277941:-1:exon
so has part: feature:276797-276918:-1:exon
so has part: feature:275641-275784:-1:exon
so has part: feature:273543-273757:-1:exon
so has part: feature:272381-272566:-1:exon
so has part: feature:271552-271634:-1:exon
so has part: feature:271086-271192:-1:exon
so has part: feature:269960-270082:-1:exon
so has part: feature:269356-269457:-1:exon
so has part: feature:268967-269071:-1:exon
so has part: feature:267761-267915:-1:exon
so has part: feature:266841-267008:-1:exon
so has part: feature:266095-266239:-1:exon
so has part: feature:265723-265800:-1:exon
so has part: feature:264835-264950:-1:exon
so has part: feature:264036-264122:-1:exon
so has part: feature:263303-263381:-1:exon
so has part: feature:262511-262686:-1:exon
so has part: feature:261629-261802:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:283226-283357:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:282063-282377:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:281838-281916:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:281064-281152:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:280236-280355:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:279233-279385:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:278447-278555:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:277840-277941:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:276797-276918:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:275641-275784:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:273543-273757:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:272381-272566:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:271552-271634:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:271086-271192:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:269960-270082:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:269356-269457:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:268967-269071:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:267761-267915:-1:exon

position:267761:-1
position: 267761
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:266841-267008:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:266095-266239:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:265723-265800:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:264835-264950:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:264036-264122:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:263303-263381:-1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:262511-262686:-1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:261629-261802:-1:exon

EHMT2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: EHMT2
product: euchromatic histone lysine methyltransferase 2, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 ESTs, 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns
transcript id: XM_041712703.1
SIO_010081: EHMT2
subclass of: SO_0000673
so part of: EHMT2
location: complement(join(261629..261802,262511..262686,263303..263381,264036..264122,264835..264950,265723..265800,266095..266239,266841..267008,267761..267915,268967..269071,269356..269457,269960..270082,271086..271192,271552..271634,272381..272566,273543..273757,275641..275784,276797..276918,277840..277941,278447..278555,279233..279385,280236..280355,280693..280697))
location: region:261629-280697:-1
so has part: feature:280693-280697:-1:exon
so has part: feature:280236-280355:-1:exon
so has part: feature:279233-279385:-1:exon
so has part: feature:278447-278555:-1:exon
so has part: feature:277840-277941:-1:exon
so has part: feature:276797-276918:-1:exon
so has part: feature:275641-275784:-1:exon
so has part: feature:273543-273757:-1:exon
so has part: feature:272381-272566:-1:exon
so has part: feature:271552-271634:-1:exon
so has part: feature:271086-271192:-1:exon
so has part: feature:269960-270082:-1:exon
so has part: feature:269356-269457:-1:exon
so has part: feature:268967-269071:-1:exon
so has part: feature:267761-267915:-1:exon
so has part: feature:266841-267008:-1:exon
so has part: feature:266095-266239:-1:exon
so has part: feature:265723-265800:-1:exon
so has part: feature:264835-264950:-1:exon
so has part: feature:264036-264122:-1:exon
so has part: feature:263303-263381:-1:exon
so has part: feature:262511-262686:-1:exon
so has part: feature:261629-261802:-1:exon

position:280697:-1
position: 280697
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:280693-280697:-1:exon

position:280693:-1
position: 280693
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:280236-280355:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:279233-279385:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:278447-278555:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:277840-277941:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:276797-276918:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:275641-275784:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:273543-273757:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:272381-272566:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:271552-271634:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:271086-271192:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:269960-270082:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:269356-269457:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:268967-269071:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:267761-267915:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:266841-267008:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:266095-266239:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:265723-265800:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:264835-264950:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:264036-264122:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:263303-263381:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:262511-262686:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:261629-261802:-1:exon

EHMT2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: EHMT2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: histone-lysine N-methyltransferase EHMT2 isoform X2
translation: MGRGRRGPPPGAAAAPRGCQATPPRPCRAPRAGGRFWGAILGAPPPPPCPPPSRAKMSLTGAGGGKAPPGQSLALRLLSLPGGGPGGRPPPPEPPQNPPEPPQNPPEPPKIHRARKTMAKPSNGQVPEKPRMSEMLHFRVSEELCGMGQHHDTPKRPKLDFGSEGLHKRLQQRPSPRASTEITVTEEMAAPPRDWDSEGGGGFSLFYDGFSVDGHGDSDSKSEGEGPGEALSEEEEEEEEEEEEEEEEDEEEEEEEEEEEEEDEESGNASDRSACSARRRARRRWKESPWLKPARKRKRKDPRGGKERGAPGPPVGPPSEYTEVPLGCLQLPGGGALSPPTTGPAEAERLEELPLCSCRMEAPKVERGGERGLCMATESVDGQLSGCGSSILKRETMRPSSRVPLMVLCESHRARMVKHQCCPGCGHFCTAGTFLECHPDVRIGHRFHRSCVSRLGGLIFCPHCGEDASEAQEVTLPRPEGTPGVAPAPPGPPRPRAETPAPSARMRGQGEGRAPRPDPRAEPIDSSGGPALALPSGGALSARGLPPGPAREHLEKALLGQEAERRKKLRFHPRQLYLSVKQGELGRVILMLLDNLDPNFQSDAQSKRSALHAAAQKGHLEICHLLLQAGANINAVDKQRRTPLMEAVANDQLDTARYLLQRGGCAYSQEEDGSTCLHHAAKNGNLEMVELLLSTGQVDVNAQDSGGWTPIIWAAEHKHIEVIRRLLTRGADVTLTDNEENICLHWASFTGSAEIAEVLLNAQCDLHAVNFHGDTPLHIAARESYHDCVSLFLSRGADPEVRNKEGDSPLDLSPERSDVWVALTLNRKLRQGAAGRGLRTERIVSRDVARGHENVPIPCVNGVDEEPCPQDYKYIAENCETSTMNIDHNITHLQHCTCQDDCSSSNCLCGQLSIRCWYDKDGRLLQEFNKIEPPLIFECNQACTCWRSCKNRVVQSGIKVRLQLYRTAKMGWGVRALQAIPPGTFICEYVGELISDAEADVREDDSYLFDLDNKDGEVYCIDARYYGNVSRFINHLCDPNIIPVRVFMLHQDLRFPRIAFFSSRHIRPGEELGFDYGDRFWDIKSKYFPCQCGSEKCKHSAEAGGGRGDPPELLPPLLPLPPP
SIO_010081: EHMT2
subclass of: SO_0000673
so part of: EHMT2
location: complement(join(261649..261802,262511..262686,263303..263381,264036..264122,264835..264950,265723..265800,266095..266239,266841..267008,267446..267480,267796..267915,268967..269071,269356..269457,269960..270082,271086..271192,271552..271634,272381..272566,273543..273757,275641..275784,276797..276918,277840..277941,278447..278555,279233..279385,280236..280355,281064..281152,281838..281916,282063..282377,283226..283285))
location: region:261649-283285:-1
so has part: feature:283226-283285:-1:exon
so has part: feature:282063-282377:-1:exon
so has part: feature:281838-281916:-1:exon
so has part: feature:281064-281152:-1:exon
so has part: feature:280236-280355:-1:exon
so has part: feature:279233-279385:-1:exon
so has part: feature:278447-278555:-1:exon
so has part: feature:277840-277941:-1:exon
so has part: feature:276797-276918:-1:exon
so has part: feature:275641-275784:-1:exon
so has part: feature:273543-273757:-1:exon
so has part: feature:272381-272566:-1:exon
so has part: feature:271552-271634:-1:exon
so has part: feature:271086-271192:-1:exon
so has part: feature:269960-270082:-1:exon
so has part: feature:269356-269457:-1:exon
so has part: feature:268967-269071:-1:exon
so has part: feature:267796-267915:-1:exon
so has part: feature:267446-267480:-1:exon
so has part: feature:266841-267008:-1:exon
so has part: feature:266095-266239:-1:exon
so has part: feature:265723-265800:-1:exon
so has part: feature:264835-264950:-1:exon
so has part: feature:264036-264122:-1:exon
so has part: feature:263303-263381:-1:exon
so has part: feature:262511-262686:-1:exon
so has part: feature:261649-261802:-1:exon

XP_041568636.1
type: Protein
SIO_000068: ncbiprotein

position:261649:-1
position: 261649
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:283285:-1
position: 283285
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:283226-283285:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:282063-282377:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:281838-281916:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:281064-281152:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:280236-280355:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:279233-279385:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:278447-278555:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:277840-277941:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:276797-276918:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:275641-275784:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:273543-273757:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:272381-272566:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:271552-271634:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:271086-271192:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:269960-270082:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:269356-269457:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:268967-269071:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:267796-267915:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:267446-267480:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:266841-267008:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:266095-266239:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:265723-265800:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:264835-264950:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:264036-264122:-1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:263303-263381:-1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:262511-262686:-1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:261649-261802:-1:exon

EHMT2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: EHMT2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: histone-lysine N-methyltransferase EHMT2 isoform X1
translation: MGRGRRGPPPGAAAAPRGCQATPPRPCRAPRAGGRFWGAILGAPPPPPCPPPSRAKMSLTGAGGGKAPPGQSLALRLLSLPGGGPGGRPPPPEPPQNPPEPPQNPPEPPKIHRARKTMAKPSNGQVPEKPRMSEMLHFRVSEELCGMGQHHDTPKRPKLDFGSEGLHKRLQQRPSPRASTEITVTEEMAAPPRDWDSEGGGGFSLFYDGFSVDGHGDSDSKSEGEGPGEALSEEEEEEEEEEEEEEEEDEEEEEEEEEEEEEDEESGNASDRSACSARRRARRRWKESPWLKPARKRKRKDPRGGKERGAPGPPVGPPSEYTEVPLGCLQLPGGGALSPPTTGPAEAERLEELPLCSCRMEAPKVERGGERGLCMATESVDGQLSGCGSSILKRETMRPSSRVPLMVLCESHRARMVKHQCCPGCGHFCTAGTFLECHPDVRIGHRFHRSCVSRLGGLIFCPHCGEDASEAQEVTLPRPEGTPGVAPAPPGPPRPRAETPAPSARMRGQGEGRAPRPDPRAEPIDSSGGPALALPSGGALSARGLPPGPAREHLEKALLGQEAERRKKLRFHPRQLYLSVKQGELGRVILMLLDNLDPNFQSDAQSKRSALHAAAQKGHLEICHLLLQAGANINAVDKQRRTPLMEAVANDQLDTARYLLQRGGCAYSQEEDGSTCLHHAAKNGNLEMVELLLSTGQVDVNAQDSGGWTPIIWAAEHKHIEVIRRLLTRGADVTLTDNEENICLHWASFTGSAEIAEVLLNAQCDLHAVNFHGDTPLHIAARESYHDCVSLFLSRGADPEVRNKEGDSPLDLSPERSDVWVALTLNRKLRQGAAGRGLRTERIVSRDVARGHENVPIPCVNGVDEEPCPQDYKYIAENCETSTMNIDHNITHLQHCTCQDDCSSSNCLCGQLSIRCWYDKDGRLLQEFNKIEPPLIFECNQACTCWRSCKNRVVQSGIKVRLQLYRTAKMGWGVRALQAIPPGTFICEYVGELISDAEADVREDDSYLFDLDNKDGEVYCIDARYYGNVSRFINHLCDPNIIPVRVFMLHQDLRFPRIAFFSSRHIRPGEELGFDYGDRFWDIKSKYFPCQCGSEKCKHSAEAGGGRGDPPELLPPLLPLPPP
SIO_010081: EHMT2
subclass of: SO_0000673
so part of: EHMT2
location: complement(join(261649..261802,262511..262686,263303..263381,264036..264122,264835..264950,265723..265800,266095..266239,266841..267008,267761..267915,268967..269071,269356..269457,269960..270082,271086..271192,271552..271634,272381..272566,273543..273757,275641..275784,276797..276918,277840..277941,278447..278555,279233..279385,280236..280355,281064..281152,281838..281916,282063..282377,283226..283285))
location: region:261649-283285:-1
so has part: feature:283226-283285:-1:exon
so has part: feature:282063-282377:-1:exon
so has part: feature:281838-281916:-1:exon
so has part: feature:281064-281152:-1:exon
so has part: feature:280236-280355:-1:exon
so has part: feature:279233-279385:-1:exon
so has part: feature:278447-278555:-1:exon
so has part: feature:277840-277941:-1:exon
so has part: feature:276797-276918:-1:exon
so has part: feature:275641-275784:-1:exon
so has part: feature:273543-273757:-1:exon
so has part: feature:272381-272566:-1:exon
so has part: feature:271552-271634:-1:exon
so has part: feature:271086-271192:-1:exon
so has part: feature:269960-270082:-1:exon
so has part: feature:269356-269457:-1:exon
so has part: feature:268967-269071:-1:exon
so has part: feature:267761-267915:-1:exon
so has part: feature:266841-267008:-1:exon
so has part: feature:266095-266239:-1:exon
so has part: feature:265723-265800:-1:exon
so has part: feature:264835-264950:-1:exon
so has part: feature:264036-264122:-1:exon
so has part: feature:263303-263381:-1:exon
so has part: feature:262511-262686:-1:exon
so has part: feature:261649-261802:-1:exon

XP_041568635.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:283226-283285:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:282063-282377:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:281838-281916:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:281064-281152:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:280236-280355:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:279233-279385:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:278447-278555:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:277840-277941:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:276797-276918:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:275641-275784:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:273543-273757:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:272381-272566:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:271552-271634:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:271086-271192:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:269960-270082:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:269356-269457:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:268967-269071:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:267761-267915:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:266841-267008:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:266095-266239:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:265723-265800:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:264835-264950:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:264036-264122:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:263303-263381:-1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:262511-262686:-1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:261649-261802:-1:exon

EHMT2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: EHMT2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: histone-lysine N-methyltransferase EHMT2 isoform X3
translation: MAAPPRDWDSEGGGGFSLFYDGFSVDGHGDSDSKSEGEGPGEALSEEEEEEEEEEEEEEEEDEEEEEEEEEEEEEDEESGNASDRSACSARRRARRRWKESPWLKPARKRKRKDPRGGKERGAPGPPVGPPSEYTEVPLGCLQLPGGGALSPPTTGPAEAERLEELPLCSCRMEAPKVERGGERGLCMATESVDGQLSGCGSSILKRETMRPSSRVPLMVLCESHRARMVKHQCCPGCGHFCTAGTFLECHPDVRIGHRFHRSCVSRLGGLIFCPHCGEDASEAQEVTLPRPEGTPGVAPAPPGPPRPRAETPAPSARMRGQGEGRAPRPDPRAEPIDSSGGPALALPSGGALSARGLPPGPAREHLEKALLGQEAERRKKLRFHPRQLYLSVKQGELGRVILMLLDNLDPNFQSDAQSKRSALHAAAQKGHLEICHLLLQAGANINAVDKQRRTPLMEAVANDQLDTARYLLQRGGCAYSQEEDGSTCLHHAAKNGNLEMVELLLSTGQVDVNAQDSGGWTPIIWAAEHKHIEVIRRLLTRGADVTLTDNEENICLHWASFTGSAEIAEVLLNAQCDLHAVNFHGDTPLHIAARESYHDCVSLFLSRGADPEVRNKEGDSPLDLSPERSDVWVALTLNRKLRQGAAGRGLRTERIVSRDVARGHENVPIPCVNGVDEEPCPQDYKYIAENCETSTMNIDHNITHLQHCTCQDDCSSSNCLCGQLSIRCWYDKDGRLLQEFNKIEPPLIFECNQACTCWRSCKNRVVQSGIKVRLQLYRTAKMGWGVRALQAIPPGTFICEYVGELISDAEADVREDDSYLFDLDNKDGEVYCIDARYYGNVSRFINHLCDPNIIPVRVFMLHQDLRFPRIAFFSSRHIRPGEELGFDYGDRFWDIKSKYFPCQCGSEKCKHSAEAGGGRGDPPELLPPLLPLPPP
SIO_010081: EHMT2
subclass of: SO_0000673
so part of: EHMT2
location: complement(join(261649..261802,262511..262686,263303..263381,264036..264122,264835..264950,265723..265800,266095..266239,266841..267008,267761..267915,268967..269071,269356..269457,269960..270082,271086..271192,271552..271634,272381..272566,273543..273757,275641..275784,276797..276918,277840..277941,278447..278555,279233..279385,280236..280337))
location: region:261649-280337:-1
so has part: feature:280236-280337:-1:exon
so has part: feature:279233-279385:-1:exon
so has part: feature:278447-278555:-1:exon
so has part: feature:277840-277941:-1:exon
so has part: feature:276797-276918:-1:exon
so has part: feature:275641-275784:-1:exon
so has part: feature:273543-273757:-1:exon
so has part: feature:272381-272566:-1:exon
so has part: feature:271552-271634:-1:exon
so has part: feature:271086-271192:-1:exon
so has part: feature:269960-270082:-1:exon
so has part: feature:269356-269457:-1:exon
so has part: feature:268967-269071:-1:exon
so has part: feature:267761-267915:-1:exon
so has part: feature:266841-267008:-1:exon
so has part: feature:266095-266239:-1:exon
so has part: feature:265723-265800:-1:exon
so has part: feature:264835-264950:-1:exon
so has part: feature:264036-264122:-1:exon
so has part: feature:263303-263381:-1:exon
so has part: feature:262511-262686:-1:exon
so has part: feature:261649-261802:-1:exon

XP_041568637.1
type: Protein
SIO_000068: ncbiprotein

position:280337:-1
position: 280337
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:280236-280337:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:279233-279385:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:278447-278555:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:277840-277941:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:276797-276918:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:275641-275784:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:273543-273757:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:272381-272566:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:271552-271634:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:271086-271192:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:269960-270082:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:269356-269457:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:268967-269071:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:267761-267915:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:266841-267008:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:266095-266239:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:265723-265800:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:264835-264950:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:264036-264122:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:263303-263381:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:262511-262686:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:261649-261802:-1:exon

ZBTB12
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: ZBTB12
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(287430..288643)
location: region:287430-288643:-1
so has part: feature:287430-288643:-1:exon
subclass of: SO_0000010

121468718
type: Gene
SIO_000068: ncbigene

position:287430:-1
position: 287430
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:288643:-1
position: 288643
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:287430-288643:-1:exon

ZBTB12
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: ZBTB12
product: zinc finger and BTB domain containing 12
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_041712755.1
SIO_010081: ZBTB12
subclass of: SO_0000673
so part of: ZBTB12
location: complement(287430..288643)
location: region:287430-288643:-1
so has part: feature:287430-288643:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:287430-288643:-1:exon

ZBTB12
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: ZBTB12
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: zinc finger and BTB domain-containing protein 12
translation: MSSCAEVLRFQLPGHEAAALRSMTRLRAEERFCDVTIVARSLRFRGHRVILAACSPFLRDQFLLNPAAELRVSLAHSARVLADLLLSCYTGALEFAGRDLVNYLTAASYLQMEHVVERCRGALARFIQPAPAAPAPPPKPEEEEEEEDEEDAAGDVCIVKVEPATRRRGRRWPAVTGAEVTPSTAAAVGLPDGGAARIGVVKACYSLAEDAEGEGLVIFPGAGGGVGVASSTEEPPGTHTAASVSATTSTVTPAASSRCGKCGESFQGVEKLVFHMRAQHFVFMCPRCGKQFNHSSNLNRHMNVHRGVKSHGCGVCGKSFTQKSTLHDHLNLHSGARPYRCSYCDVRFAHKPAIRRHLKEQHGKTTAQNVLEAGGAEGGALLR
SIO_010081: ZBTB12
subclass of: SO_0000673
so part of: ZBTB12
location: complement(287456..288607)
location: region:287456-288607:-1
so has part: feature:287456-288607:-1:exon

XP_041568689.1
type: Protein
SIO_000068: ncbiprotein

position:287456:-1
position: 287456
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:288607:-1
position: 288607
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:287456-288607:-1:exon

LOC121468689
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: LOC121468689
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(291312..293671)
location: region:291312-293671:-1
so has part: feature:291312-293671:-1:exon
subclass of: SO_0000010

121468689
type: Gene
SIO_000068: ncbigene

position:291312:-1
position: 291312
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:293671:-1
position: 293671
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:291312-293671:-1:exon

LOC121468689
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: LOC121468689
product: epithelial discoidin domain-containing receptor 1-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 90% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_041712680.1
SIO_010081: LOC121468689
subclass of: SO_0000673
so part of: LOC121468689
location: complement(join(291312..291358,291456..291603,292164..292392,292764..292866,293550..293671))
location: region:291312-293671:-1
so has part: feature:293550-293671:-1:exon
so has part: feature:292764-292866:-1:exon
so has part: feature:292164-292392:-1:exon
so has part: feature:291456-291603:-1:exon
so has part: feature:291312-291358:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:293550-293671:-1:exon

position:293550:-1
position: 293550
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:292764-292866:-1:exon

position:292764:-1
position: 292764
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:292866:-1
position: 292866
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:292164-292392:-1:exon

position:292164:-1
position: 292164
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:292392:-1
position: 292392
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:291456-291603:-1:exon

position:291456:-1
position: 291456
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:291603:-1
position: 291603
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:291312-291358:-1:exon

position:291358:-1
position: 291358
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC121468689
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: LOC121468689
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: epithelial discoidin domain-containing receptor 1-like
translation: MAALPLPLPLLLLAGVAEGTSRGTLGTALDLGRCRFALGMQDGTIPDFRLSASSAWSDSTAARHGRLGRSDGDGAWCPAGPVFPAEQEFLEVDLGRLHVVTLVGTQGRHAGGHGREFARQYRLRYSRDRRRWLRWRDRWGHEVIGGNEDPEGVVLKDLSPAPVARALRVYPRAPRAMSVCLRLELYGCPWEAVVVTHCRVRHPAGP
SIO_010081: LOC121468689
subclass of: SO_0000673
so part of: LOC121468689
location: complement(join(291312..291358,291456..291603,292164..292392,292764..292866,293550..293643))
location: region:291312-293643:-1
so has part: feature:293550-293643:-1:exon
so has part: feature:292764-292866:-1:exon
so has part: feature:292164-292392:-1:exon
so has part: feature:291456-291603:-1:exon
so has part: feature:291312-291358:-1:exon

XP_041568614.1
type: Protein
SIO_000068: ncbiprotein

position:293643:-1
position: 293643
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:293550-293643:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:292764-292866:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:292164-292392:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:291456-291603:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:291312-291358:-1:exon

LOC121468728
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: LOC121468728
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 298670..300325
location: region:298670-300325:1
so has part: feature:298670-300325:1:exon
subclass of: SO_0000011

121468728
type: Gene
SIO_000068: ncbigene

position:298670:1
position: 298670
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:300325:1
position: 300325
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:298670-300325:1:exon

LOC121468728
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 59729
nc RNA class: lncRNA
gene: LOC121468728
product: uncharacterized LOC121468728
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
transcript id: XR_005978544.1
SIO_010081: LOC121468728
subclass of: SO_0000673
so part of: LOC121468728
location: join(298670..299183,299296..299456,300230..300325)
location: region:298670-300325:1
so has part: feature:298670-299183:1:exon
so has part: feature:299296-299456:1:exon
so has part: feature:300230-300325:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:298670-299183:1:exon

position:299183:1
position: 299183
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:299296-299456:1:exon

position:299296:1
position: 299296
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:299456:1
position: 299456
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:300230-300325:1:exon

position:300230:1
position: 300230
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

IER3
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: IER3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 300975..304320
location: region:300975-304320:1
so has part: feature:300975-304320:1:exon
subclass of: SO_0000010

121468725
type: Gene
SIO_000068: ncbigene

position:300975:1
position: 300975
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:304320:1
position: 304320
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:300975-304320:1:exon

IER3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: IER3
product: immediate early response 3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 63 samples with support for all annotated introns
transcript id: XM_041712772.1
SIO_010081: IER3
subclass of: SO_0000673
so part of: IER3
location: join(300975..301636,303281..304320)
location: region:300975-304320:1
so has part: feature:300975-301636:1:exon
so has part: feature:303281-304320:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:300975-301636:1:exon

position:301636:1
position: 301636
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:303281-304320:1:exon

position:303281:1
position: 303281
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

IER3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: IER3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: radiation-inducible immediate-early gene IEX-1
translation: MSVVVAAVAATARCPGRVWGHPEGVPGAVAPSPPRHFTFEPLPPPPGPSRPRRRHRRVLYPPAVRRPLPSEEPSAAKRLLLLLLAVVSAQIYSAPGDADAASGARTALGTPPGTPPVLEGPQIPTGNGNGTGNGNGTGNGNGTGTAPGGRFCPAAPLLSPPGGAAGN
SIO_010081: IER3
subclass of: SO_0000673
so part of: IER3
location: join(301448..301636,303281..303595)
location: region:301448-303595:1
so has part: feature:301448-301636:1:exon
so has part: feature:303281-303595:1:exon

XP_041568706.1
type: Protein
SIO_000068: ncbiprotein

position:301448:1
position: 301448
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:303595:1
position: 303595
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:301448-301636:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:303281-303595:1:exon

LOC121468711
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: LOC121468711
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(304444..309774)
location: region:304444-309774:-1
so has part: feature:304444-309774:-1:exon
subclass of: SO_0000010

121468711
type: Gene
SIO_000068: ncbigene

position:304444:-1
position: 304444
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:309774:-1
position: 309774
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:304444-309774:-1:exon

LOC121468711
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: LOC121468711
product: zinc finger protein 345-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 ESTs, 65 Proteins, and 97% coverage of the annotated genomic feature by RNAseq alignments, including 34 samples with support for all annotated introns
transcript id: XM_041712728.1
SIO_010081: LOC121468711
subclass of: SO_0000673
so part of: LOC121468711
location: complement(join(304444..307221,307733..307963,308346..308420,308804..308862,309721..309774))
location: region:304444-309774:-1
so has part: feature:309721-309774:-1:exon
so has part: feature:308804-308862:-1:exon
so has part: feature:308346-308420:-1:exon
so has part: feature:307733-307963:-1:exon
so has part: feature:304444-307221:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:309721-309774:-1:exon

position:309721:-1
position: 309721
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:308804-308862:-1:exon

position:308804:-1
position: 308804
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:308862:-1
position: 308862
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:308346-308420:-1:exon

position:308346:-1
position: 308346
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:308420:-1
position: 308420
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:307733-307963:-1:exon

position:307733:-1
position: 307733
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:307963:-1
position: 307963
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:304444-307221:-1:exon

position:307221:-1
position: 307221
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC121468711
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: LOC121468711
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: zinc finger protein 345-like
translation: MQENYENVISLAEEIAISWPRITAFAESHRRRGLGAAAEAEGDLPHPSPPPAPPVPPGVAGDGGGAEPELRRQLGRILQTAGRSRVEKILRELVREQGQAGKRRNRRRTPKDGGAGADSGSEDDPTAAATQEPPAPTDPNPPSAGKNRKPAGSCSECGKSAAQPRRCSDCGRRRRQPERGGAAAVEKPHRCGDCGKGFSRGSNLAQHRRIHTGERPHRCGDCGKGFIQRSDLERHRRVHTGERPYACGDCGKRFSVSSHLDRHRRTHAGGPGPPEQPRARTKTAPPAVESAPYRCPDCGKSFGQRSALAKHRKTHTGERPHRCGDCGKSFSRGSNLTQHRRIHTGERPFACGDCGKGFIQRSDLERHQRVHTGERPYACGECGKRFSVSSHLDRHRKIHAAERASYRCPEHLAGFLAAHRNGRLFQCGQCGRCFGQGAALLKHQRSHGGAAGGTGGSASPKCLDCGKSRGLCQDCGRRPEEAAAAAAEKPYKCQECGKSFGQRSALVKHRRIHTGEKPYKCQDCAKGFIQKSDLTIHRRMHTGEKPYACRECGKRFSVSSNLLTHQRTHLGEKPFQCAECGKSFIQRSELTIHRRVHTGEKPYKCRECGKCFSRSSHLNRHQRTHGKAGAAASSSSSSSSFSSSSSSSSSLVPAAPAAPGLAFPAFPGSSAVPTALELPWALALPGRAFPGFPVGN
SIO_010081: LOC121468711
subclass of: SO_0000673
so part of: LOC121468711
location: complement(join(305471..307221,307733..307963,308346..308420,308804..308837))
location: region:305471-308837:-1
so has part: feature:308804-308837:-1:exon
so has part: feature:308346-308420:-1:exon
so has part: feature:307733-307963:-1:exon
so has part: feature:305471-307221:-1:exon

XP_041568662.1
type: Protein
SIO_000068: ncbiprotein

position:305471:-1
position: 305471
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:308837:-1
position: 308837
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:308804-308837:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:308346-308420:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:307733-307963:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:305471-307221:-1:exon

LOC121468713
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: LOC121468713
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(310540..314521)
location: region:310540-314521:-1
so has part: feature:310540-314521:-1:exon
subclass of: SO_0000010

121468713
type: Gene
SIO_000068: ncbigene

position:310540:-1
position: 310540
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:314521:-1
position: 314521
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:310540-314521:-1:exon

LOC121468713
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: LOC121468713
product: zinc finger protein 345-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 ESTs, 2 long SRA reads, 49 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
transcript id: XM_041712731.1
SIO_010081: LOC121468713
subclass of: SO_0000673
so part of: LOC121468713
location: complement(join(310540..312693,313529..313650,314501..314521))
location: region:310540-314521:-1
so has part: feature:314501-314521:-1:exon
so has part: feature:313529-313650:-1:exon
so has part: feature:310540-312693:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:314501-314521:-1:exon

position:314501:-1
position: 314501
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:313529-313650:-1:exon

position:313529:-1
position: 313529
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:313650:-1
position: 313650
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:310540-312693:-1:exon

position:312693:-1
position: 312693
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC121468713
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: LOC121468713
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: zinc finger protein 345-like
translation: MDPWGEEEEDEEEPEPEVIFGDEGEEDPYDPNGIQGTPDSDPALAAAPEVVELEPGALLASAELSERETLRWTVVQQIDPGTSAKGRRSGRSAKSQSFSNFKSIIVLQKSYECAECGKSFSCSSHFSKHRRTHTGEKPFRCAHCGKSFNVSSNLYRHQRGHGSAEAAPEKPRGLPYTCQECGKSFRRNKELATHRRLHTGDLPFRCGDCGKSFSWSSHWLRHQRIHTGEKPYECPECGKSFSRSSHLYRHQRGHAGGRSYICTYCGRSFGSILHFERHQRTHTGVRPYKCSLCRKSFGDAPALVKHQRIHLGEGPFRCEECGKGFGARSQYARHRRSSHGGPGAEKPYRCGDCGKSFSWSSHWERHQRIHTGEKPYECPECGKSFGRTSHLYRHQRTHAGGRPHVCGECGKSFNSTLHFQKHQRAHGAGARKSCGECGKSFADPSALAKHQRVHEEFQKSGESLVESQKCGESLADSSLLAKHQRVHKESQKSGESSVESQKSGKSLVESQKSGESLVESQKSGESSVESQKSCSECGRTFGDPSALAKHRWLHDPGRNFGTGSQLRRQLRSHKEEEMPEG
SIO_010081: LOC121468713
subclass of: SO_0000673
so part of: LOC121468713
location: complement(join(311054..312693,313529..313634))
location: region:311054-313634:-1
so has part: feature:313529-313634:-1:exon
so has part: feature:311054-312693:-1:exon

XP_041568665.1
type: Protein
SIO_000068: ncbiprotein

position:311054:-1
position: 311054
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:313634:-1
position: 313634
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:313529-313634:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:311054-312693:-1:exon

LOC121468710
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: LOC121468710
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 314580..319586
location: region:314580-319586:1
so has part: feature:314580-319586:1:exon
subclass of: SO_0000010

121468710
type: Gene
SIO_000068: ncbigene

position:314580:1
position: 314580
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:319586:1
position: 319586
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:314580-319586:1:exon

LOC121468710
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: LOC121468710
product: zinc finger protein 345-like, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 34 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 79 samples with support for all annotated introns
transcript id: XM_041712726.1
SIO_010081: LOC121468710
subclass of: SO_0000673
so part of: LOC121468710
location: join(314580..314784,315645..315772,316065..316139,316460..319586)
location: region:314580-319586:1
so has part: feature:314580-314784:1:exon
so has part: feature:315645-315772:1:exon
so has part: feature:316065-316139:1:exon
so has part: feature:316460-319586:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:314580-314784:1:exon

position:314784:1
position: 314784
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:315645-315772:1:exon

position:315645:1
position: 315645
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:315772:1
position: 315772
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:316065-316139:1:exon

position:316065:1
position: 316065
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:316139:1
position: 316139
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:316460-319586:1:exon

position:316460:1
position: 316460
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC121468710
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: LOC121468710
product: zinc finger protein 345-like, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 34 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 86 samples with support for all annotated introns
transcript id: XM_041712725.1
SIO_010081: LOC121468710
subclass of: SO_0000673
so part of: LOC121468710
location: join(314831..315772,316065..316139,316460..319586)
location: region:314831-319586:1
so has part: feature:314831-315772:1:exon
so has part: feature:316065-316139:1:exon
so has part: feature:316460-319586:1:exon

position:314831:1
position: 314831
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:314831-315772:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:316065-316139:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:316460-319586:1:exon

LOC121468710
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: LOC121468710
product: zinc finger protein 345-like, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 34 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 49 samples with support for all annotated introns
transcript id: XM_041712727.1
SIO_010081: LOC121468710
subclass of: SO_0000673
so part of: LOC121468710
location: join(314831..315459,315645..315772,316065..316139,316460..319586)
location: region:314831-319586:1
so has part: feature:314831-315459:1:exon
so has part: feature:315645-315772:1:exon
so has part: feature:316065-316139:1:exon
so has part: feature:316460-319586:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:314831-315459:1:exon

position:315459:1
position: 315459
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:315645-315772:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:316065-316139:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:316460-319586:1:exon

LOC121468710
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: LOC121468710
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: zinc finger protein 345-like
translation: MQESYESVISLAEEIAISWPRITAFAESHRRRGLGADAAPASLSENEEEEPPPDPLEKPETPGTPPAPNPKSPPSPASAKPGATEAPNPEPRSRKAPGKRQGKSGARGFKKFPPRQLRCHDCGKSLALPKRPRGTERPHKCPECGKSFRLGSSLVTHQRRHAGDNPYKCPDCGKSFSVGSAFIQHQRVHAGAAPCRCGVCGKSFPASSGLVKHQKLHLEEKPYKCGDCGKGFNWNSHLERHRRIHTGEKPYECPECGKSFSWSSHLDRHRRTHAAARPAGRCTECGSASPEPPERGAPKTLKSPKVPKNRREPAEKPHKCAECGKGFGLAAALAQHRRGHAPGKPYECRECGKSFSWSSHLDRHRRIHMGEKPFRCGSCGKSFSQSSHLERHRKIHREPCRECGKDGGKKGGKSLQKRCRASGELCGDCGAGAAWEEKCGECGRNPGPGLASGLGSGLGSGLGSGSASGPASSTGNLKDQGTQTGEKPHACPECGKSFAQNSALAKHRRMHTGEKPYGCPECGKSFGVRSNLVKHRRTHLGEKPYKCPECGKGFIQKSDLTKHRRMHTGEKPYACRECGKRFSVSSNLIKHRRIHLGEKPFQCAECGKSFIQRSELTIHRRVHTGEKPYKCRECGKCFSRSSHLNRHQRTHGKAGAAASSSSSSSFSSSSSSSSSSSSLVPAAPAAPGLAFPAFPGSSAVPTALELPWALALPGRAFPGFPVGN
SIO_010081: LOC121468710
subclass of: SO_0000673
so part of: LOC121468710
location: join(315739..315772,316065..316139,316460..318525)
location: region:315739-318525:1
so has part: feature:315739-315772:1:exon
so has part: feature:316065-316139:1:exon
so has part: feature:316460-318525:1:exon

XP_041568659.1
type: Protein
SIO_000068: ncbiprotein

position:315739:1
position: 315739
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:318525:1
position: 318525
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:315739-315772:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:316065-316139:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:316460-318525:1:exon

LOC121468710
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: LOC121468710
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: zinc finger protein 345-like
translation: MQESYESVISLAEEIAISWPRITAFAESHRRRGLGADAAPASLSENEEEEPPPDPLEKPETPGTPPAPNPKSPPSPASAKPGATEAPNPEPRSRKAPGKRQGKSGARGFKKFPPRQLRCHDCGKSLALPKRPRGTERPHKCPECGKSFRLGSSLVTHQRRHAGDNPYKCPDCGKSFSVGSAFIQHQRVHAGAAPCRCGVCGKSFPASSGLVKHQKLHLEEKPYKCGDCGKGFNWNSHLERHRRIHTGEKPYECPECGKSFSWSSHLDRHRRTHAAARPAGRCTECGSASPEPPERGAPKTLKSPKVPKNRREPAEKPHKCAECGKGFGLAAALAQHRRGHAPGKPYECRECGKSFSWSSHLDRHRRIHMGEKPFRCGSCGKSFSQSSHLERHRKIHREPCRECGKDGGKKGGKSLQKRCRASGELCGDCGAGAAWEEKCGECGRNPGPGLASGLGSGLGSGLGSGSASGPASSTGNLKDQGTQTGEKPHACPECGKSFAQNSALAKHRRMHTGEKPYGCPECGKSFGVRSNLVKHRRTHLGEKPYKCPECGKGFIQKSDLTKHRRMHTGEKPYACRECGKRFSVSSNLIKHRRIHLGEKPFQCAECGKSFIQRSELTIHRRVHTGEKPYKCRECGKCFSRSSHLNRHQRTHGKAGAAASSSSSSSFSSSSSSSSSSSSLVPAAPAAPGLAFPAFPGSSAVPTALELPWALALPGRAFPGFPVGN
SIO_010081: LOC121468710
subclass of: SO_0000673
so part of: LOC121468710
location: join(315739..315772,316065..316139,316460..318525)
location: region:315739-318525:1
so has part: feature:315739-315772:1:exon
so has part: feature:316065-316139:1:exon
so has part: feature:316460-318525:1:exon

XP_041568660.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:315739-315772:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:316065-316139:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:316460-318525:1:exon

LOC121468710
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: LOC121468710
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: zinc finger protein 345-like
translation: MQESYESVISLAEEIAISWPRITAFAESHRRRGLGADAAPASLSENEEEEPPPDPLEKPETPGTPPAPNPKSPPSPASAKPGATEAPNPEPRSRKAPGKRQGKSGARGFKKFPPRQLRCHDCGKSLALPKRPRGTERPHKCPECGKSFRLGSSLVTHQRRHAGDNPYKCPDCGKSFSVGSAFIQHQRVHAGAAPCRCGVCGKSFPASSGLVKHQKLHLEEKPYKCGDCGKGFNWNSHLERHRRIHTGEKPYECPECGKSFSWSSHLDRHRRTHAAARPAGRCTECGSASPEPPERGAPKTLKSPKVPKNRREPAEKPHKCAECGKGFGLAAALAQHRRGHAPGKPYECRECGKSFSWSSHLDRHRRIHMGEKPFRCGSCGKSFSQSSHLERHRKIHREPCRECGKDGGKKGGKSLQKRCRASGELCGDCGAGAAWEEKCGECGRNPGPGLASGLGSGLGSGLGSGSASGPASSTGNLKDQGTQTGEKPHACPECGKSFAQNSALAKHRRMHTGEKPYGCPECGKSFGVRSNLVKHRRTHLGEKPYKCPECGKGFIQKSDLTKHRRMHTGEKPYACRECGKRFSVSSNLIKHRRIHLGEKPFQCAECGKSFIQRSELTIHRRVHTGEKPYKCRECGKCFSRSSHLNRHQRTHGKAGAAASSSSSSSFSSSSSSSSSSSSLVPAAPAAPGLAFPAFPGSSAVPTALELPWALALPGRAFPGFPVGN
SIO_010081: LOC121468710
subclass of: SO_0000673
so part of: LOC121468710
location: join(315739..315772,316065..316139,316460..318525)
location: region:315739-318525:1
so has part: feature:315739-315772:1:exon
so has part: feature:316065-316139:1:exon
so has part: feature:316460-318525:1:exon

XP_041568661.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:315739-315772:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:316065-316139:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:316460-318525:1:exon

SH3BP5L
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: SH3BP5L
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(320796..327847)
location: region:320796-327847:-1
so has part: feature:320796-327847:-1:exon
subclass of: SO_0000010

121468715
type: Gene
SIO_000068: ncbigene

position:320796:-1
position: 320796
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:327847:-1
position: 327847
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:320796-327847:-1:exon

SH3BP5L
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: SH3BP5L
product: SH3 binding domain protein 5 like, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 2 long SRA reads, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 61 samples with support for all annotated introns
transcript id: XM_041712746.1
SIO_010081: SH3BP5L
subclass of: SO_0000673
so part of: SH3BP5L
location: complement(join(320796..322667,323611..323784,324731..324892,325592..325720,326239..326301,326765..326968,327756..327847))
location: region:320796-327847:-1
so has part: feature:327756-327847:-1:exon
so has part: feature:326765-326968:-1:exon
so has part: feature:326239-326301:-1:exon
so has part: feature:325592-325720:-1:exon
so has part: feature:324731-324892:-1:exon
so has part: feature:323611-323784:-1:exon
so has part: feature:320796-322667:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:327756-327847:-1:exon

position:327756:-1
position: 327756
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:326765-326968:-1:exon

position:326765:-1
position: 326765
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:326968:-1
position: 326968
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:326239-326301:-1:exon

position:326239:-1
position: 326239
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:326301:-1
position: 326301
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:325592-325720:-1:exon

position:325592:-1
position: 325592
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:325720:-1
position: 325720
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:324731-324892:-1:exon

position:324731:-1
position: 324731
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:324892:-1
position: 324892
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:323611-323784:-1:exon

position:323611:-1
position: 323611
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:323784:-1
position: 323784
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:320796-322667:-1:exon

position:322667:-1
position: 322667
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

SH3BP5L
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: SH3BP5L
product: SH3 binding domain protein 5 like, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 106 samples with support for all annotated introns
transcript id: XM_041712747.1
SIO_010081: SH3BP5L
subclass of: SO_0000673
so part of: SH3BP5L
location: complement(join(320796..322667,323611..323784,324731..324892,325592..325720,326239..326301,326765..326996))
location: region:320796-326996:-1
so has part: feature:326765-326996:-1:exon
so has part: feature:326239-326301:-1:exon
so has part: feature:325592-325720:-1:exon
so has part: feature:324731-324892:-1:exon
so has part: feature:323611-323784:-1:exon
so has part: feature:320796-322667:-1:exon

position:326996:-1
position: 326996
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:326765-326996:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:326239-326301:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:325592-325720:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:324731-324892:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:323611-323784:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:320796-322667:-1:exon

SH3BP5L
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: SH3BP5L
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: SH3 domain-binding protein 5-like
translation: MGDSENPGNPPEEEEEEEEEEEELDPRIQEELEHLNEANAEINRGELELDAARCRYRRILSDSARRLNSQGSQLGACIDRARPYYEARRRAKEAQQETQRAALRYERAVGMHNAAREMVFVAEQGMGTGKNRLDPTWQEMLNHATRKVNEAEQERLWSEREHRRATRLCQEAEAEVQRLQKSLRRDIARSRPYFELKAQFNLRLEEHKSRVNSLESAVSQAKLRYAVALRNLEQISEEIHARRLQRILRKKKHRENPVGAEGGHQNPEIHGIPGETPGIPGEIPKSPVEIPRIPGETPGIPTEILAGTGRIPGENSPREASSGMGRIPGIPSENLGIPTGIPGENPRDPSEIPARTSRIPGIPSEIPGVPEETPARTSRIPGILGENLRILSEIPGIPDGIPDRTCGIPGIPGEIPGIPREASTSGDSLSLLSLQSIASDLQKFDSVEHLAGISGIPDALSLHSEELGEGRERRRNFRHHRSVSL
SIO_010081: SH3BP5L
subclass of: SO_0000673
so part of: SH3BP5L
location: complement(join(321825..322667,323611..323784,324731..324892,325592..325720,326239..326301,326765..326851))
location: region:321825-326851:-1
so has part: feature:326765-326851:-1:exon
so has part: feature:326239-326301:-1:exon
so has part: feature:325592-325720:-1:exon
so has part: feature:324731-324892:-1:exon
so has part: feature:323611-323784:-1:exon
so has part: feature:321825-322667:-1:exon

XP_041568680.1
type: Protein
SIO_000068: ncbiprotein

position:321825:-1
position: 321825
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:326851:-1
position: 326851
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:326765-326851:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:326239-326301:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:325592-325720:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:324731-324892:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:323611-323784:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:321825-322667:-1:exon

SH3BP5L
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: SH3BP5L
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: SH3 domain-binding protein 5-like
translation: MGDSENPGNPPEEEEEEEEEEEELDPRIQEELEHLNEANAEINRGELELDAARCRYRRILSDSARRLNSQGSQLGACIDRARPYYEARRRAKEAQQETQRAALRYERAVGMHNAAREMVFVAEQGMGTGKNRLDPTWQEMLNHATRKVNEAEQERLWSEREHRRATRLCQEAEAEVQRLQKSLRRDIARSRPYFELKAQFNLRLEEHKSRVNSLESAVSQAKLRYAVALRNLEQISEEIHARRLQRILRKKKHRENPVGAEGGHQNPEIHGIPGETPGIPGEIPKSPVEIPRIPGETPGIPTEILAGTGRIPGENSPREASSGMGRIPGIPSENLGIPTGIPGENPRDPSEIPARTSRIPGIPSEIPGVPEETPARTSRIPGILGENLRILSEIPGIPDGIPDRTCGIPGIPGEIPGIPREASTSGDSLSLLSLQSIASDLQKFDSVEHLAGISGIPDALSLHSEELGEGRERRRNFRHHRSVSL
SIO_010081: SH3BP5L
subclass of: SO_0000673
so part of: SH3BP5L
location: complement(join(321825..322667,323611..323784,324731..324892,325592..325720,326239..326301,326765..326851))
location: region:321825-326851:-1
so has part: feature:326765-326851:-1:exon
so has part: feature:326239-326301:-1:exon
so has part: feature:325592-325720:-1:exon
so has part: feature:324731-324892:-1:exon
so has part: feature:323611-323784:-1:exon
so has part: feature:321825-322667:-1:exon

XP_041568681.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:326765-326851:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:326239-326301:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:325592-325720:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:324731-324892:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:323611-323784:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:321825-322667:-1:exon

GABBR1
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: GABBR1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 329858..350528
location: region:329858-350528:1
so has part: feature:329858-350528:1:exon
subclass of: SO_0000010

121468707
type: Gene
SIO_000068: ncbigene

position:329858:1
position: 329858
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:350528:1
position: 350528
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:329858-350528:1:exon

GABBR1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: GABBR1
product: gamma-aminobutyric acid type B receptor subunit 1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 ESTs, 3 long SRA reads, 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 49 samples with support for all annotated introns
transcript id: XM_041712713.1
SIO_010081: GABBR1
subclass of: SO_0000673
so part of: GABBR1
location: join(329858..330233,330620..330713,331211..331414,332633..332821,333592..333609,335088..335248,337364..337498,339198..339368,340297..340398,340592..340657,340945..341136,341438..341680,342030..342093,342714..342791,343396..343546,344266..344398,344923..345039,345255..345362,345810..345903,346320..346447,346968..347096,347870..348013,348783..350528)
location: region:329858-350528:1
so has part: feature:329858-330233:1:exon
so has part: feature:330620-330713:1:exon
so has part: feature:331211-331414:1:exon
so has part: feature:332633-332821:1:exon
so has part: feature:333592-333609:1:exon
so has part: feature:335088-335248:1:exon
so has part: feature:337364-337498:1:exon
so has part: feature:339198-339368:1:exon
so has part: feature:340297-340398:1:exon
so has part: feature:340592-340657:1:exon
so has part: feature:340945-341136:1:exon
so has part: feature:341438-341680:1:exon
so has part: feature:342030-342093:1:exon
so has part: feature:342714-342791:1:exon
so has part: feature:343396-343546:1:exon
so has part: feature:344266-344398:1:exon
so has part: feature:344923-345039:1:exon
so has part: feature:345255-345362:1:exon
so has part: feature:345810-345903:1:exon
so has part: feature:346320-346447:1:exon
so has part: feature:346968-347096:1:exon
so has part: feature:347870-348013:1:exon
so has part: feature:348783-350528:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:329858-330233:1:exon

position:330233:1
position: 330233
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:330620-330713:1:exon

position:330620:1
position: 330620
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:330713:1
position: 330713
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:331211-331414:1:exon

position:331211:1
position: 331211
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:331414:1
position: 331414
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:332633-332821:1:exon

position:332633:1
position: 332633
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:332821:1
position: 332821
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:333592-333609:1:exon

position:333592:1
position: 333592
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:333609:1
position: 333609
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:335088-335248:1:exon

position:335088:1
position: 335088
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:335248:1
position: 335248
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:337364-337498:1:exon

position:337364:1
position: 337364
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:337498:1
position: 337498
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:339198-339368:1:exon

position:339198:1
position: 339198
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:339368:1
position: 339368
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:340297-340398:1:exon

position:340297:1
position: 340297
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:340398:1
position: 340398
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:340592-340657:1:exon

position:340592:1
position: 340592
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:340657:1
position: 340657
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:340945-341136:1:exon

position:340945:1
position: 340945
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:341136:1
position: 341136
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:341438-341680:1:exon

position:341438:1
position: 341438
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:341680:1
position: 341680
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:342030-342093:1:exon

position:342030:1
position: 342030
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:342093:1
position: 342093
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:342714-342791:1:exon

position:342714:1
position: 342714
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:342791:1
position: 342791
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:343396-343546:1:exon

position:343396:1
position: 343396
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:343546:1
position: 343546
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:344266-344398:1:exon

position:344266:1
position: 344266
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:344398:1
position: 344398
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:344923-345039:1:exon

position:344923:1
position: 344923
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:345039:1
position: 345039
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:345255-345362:1:exon

position:345255:1
position: 345255
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:345362:1
position: 345362
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:345810-345903:1:exon

position:345810:1
position: 345810
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:345903:1
position: 345903
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:346320-346447:1:exon

position:346320:1
position: 346320
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:346447:1
position: 346447
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:346968-347096:1:exon

position:346968:1
position: 346968
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:347096:1
position: 347096
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 22
SIO_000628: feature:347870-348013:1:exon

position:347870:1
position: 347870
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:348013:1
position: 348013
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 23
SIO_000628: feature:348783-350528:1:exon

position:348783:1
position: 348783
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

GABBR1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: GABBR1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: gamma-aminobutyric acid type B receptor subunit 1
translation: MPPPSLSPLSPLLLLLLSSSARGAVHANLTEGCQIIHPPRDGGIRYRGLTPDEVRSVRFLPFDYEIEYVCRPEREIVGPKVRKCQRDGTWTAMGHPSRCLRTCPKAHLSLENGQVAAGAMEKVPVEGTWARFSCQPGFRLVGAARSNCTRSGRWSQPRPHCLPHRPPSGKKAVHVGALFPMSGGWPGGQACLPAVRMALEDINERRDILPDYELRLIHVDSKCDPGQATKLLYELLYNLPFKIILMPGCSSVSTLVAEAARIWNVTVLSYGSSSPALSNRRRFPTFFRTHPSATLHNPTRVQLFKKWGWTKIATIQQTEEVFTSTLDDLDRRVKEAGLEITFRQSFFSDPSASVRNLKRQDARIIVGLFYETVARKVFCEVYKEKLYGKKYVWFLIGWYANKWFRTPDPSINCTEAEMAEAVEGHITTEIVMLNPENTRSISNMTSQEFIEKLEKRLGNNPKETGGYQEAPLAYDAIWALALALNKTAQELAKQGVGLDEFNYNNKTITDEIYRALNSSAFEGVSGHVVFDASGSRMAWTLIEQLQDGEYQKIGYYDSTKDNLSWYNNDKWIGGSPPADYTKVITTFRFLSQKLFISVAVLASLGIVLAVVCLAFNIYNGHVRYIQNSQPYLNNMTAVGCTLALAAVFPLGLDGYHIGPGLFPLVCQARLWLLGLGFSLAYGSMFTKIWWVHTVFTKKDDKKDKRKSLEPWKLYATVGGLVAFDVVTLSVWQIVDPLHRTIEEFTKEEPKSDMDVSILPQLEHCSSTKMNTWLGIFYGFKGLLLLLGIFLAYETKSVSTEKINDHRAVGMAIYNVAVLCLITAPVTLILSSQQDAAFAFASLAVVFSSYITLVVLFVPKMRRLITRGEWQAEQQDTMKTGSSTNNNEEEKSRLLEKENRELEKIIAEKEERVSELRQQLQARQQLQLRSRRRHSRDSQNSQNSQNHLGPSSQHSQISQHSQISRDSQISQGFPQPSLVRCLVSEQAEKLGRGNCDGSRVHLLYK
SIO_010081: GABBR1
subclass of: SO_0000673
so part of: GABBR1
location: join(330620..330713,331211..331414,332633..332821,333592..333609,335088..335248,337364..337498,339198..339368,340297..340398,340592..340657,340945..341136,341438..341680,342030..342093,342714..342791,343396..343546,344266..344398,344923..345039,345255..345362,345810..345903,346320..346447,346968..347096,347870..348013,348783..349076)
location: region:330620-349076:1
so has part: feature:330620-330713:1:exon
so has part: feature:331211-331414:1:exon
so has part: feature:332633-332821:1:exon
so has part: feature:333592-333609:1:exon
so has part: feature:335088-335248:1:exon
so has part: feature:337364-337498:1:exon
so has part: feature:339198-339368:1:exon
so has part: feature:340297-340398:1:exon
so has part: feature:340592-340657:1:exon
so has part: feature:340945-341136:1:exon
so has part: feature:341438-341680:1:exon
so has part: feature:342030-342093:1:exon
so has part: feature:342714-342791:1:exon
so has part: feature:343396-343546:1:exon
so has part: feature:344266-344398:1:exon
so has part: feature:344923-345039:1:exon
so has part: feature:345255-345362:1:exon
so has part: feature:345810-345903:1:exon
so has part: feature:346320-346447:1:exon
so has part: feature:346968-347096:1:exon
so has part: feature:347870-348013:1:exon
so has part: feature:348783-349076:1:exon

XP_041568647.1
type: Protein
SIO_000068: ncbiprotein

position:349076:1
position: 349076
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:330620-330713:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:331211-331414:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:332633-332821:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:333592-333609:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:335088-335248:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:337364-337498:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:339198-339368:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:340297-340398:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:340592-340657:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:340945-341136:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:341438-341680:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:342030-342093:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:342714-342791:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:343396-343546:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:344266-344398:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:344923-345039:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:345255-345362:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:345810-345903:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:346320-346447:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:346968-347096:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:347870-348013:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:348783-349076:1:exon

LOC121468734
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: LOC121468734
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 335255..335715
location: region:335255-335715:1
so has part: feature:335255-335715:1:exon
subclass of: SO_0000011

121468734
type: Gene
SIO_000068: ncbigene

position:335255:1
position: 335255
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:335715:1
position: 335715
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:335255-335715:1:exon

LOC121468734
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 59729
nc RNA class: lncRNA
gene: LOC121468734
product: uncharacterized LOC121468734
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 54 samples with support for all annotated introns
transcript id: XR_005978554.1
SIO_010081: LOC121468734
subclass of: SO_0000673
so part of: LOC121468734
location: join(335255..335413,335588..335715)
location: region:335255-335715:1
so has part: feature:335255-335413:1:exon
so has part: feature:335588-335715:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:335255-335413:1:exon

position:335413:1
position: 335413
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:335588-335715:1:exon

position:335588:1
position: 335588
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

RPS5
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: RPS5
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(351100..355174)
location: region:351100-355174:-1
so has part: feature:351100-355174:-1:exon
subclass of: SO_0000010

121468724
type: Gene
SIO_000068: ncbigene

position:351100:-1
position: 351100
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:355174:-1
position: 355174
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:351100-355174:-1:exon

RPS5
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: RPS5
product: ribosomal protein S5, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 38 ESTs, 2 long SRA reads, 21 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 149 samples with support for all annotated introns
transcript id: XM_041712770.1
SIO_010081: RPS5
subclass of: SO_0000673
so part of: RPS5
location: complement(join(351100..351234,352091..352189,352409..352537,353302..353511,354102..354207,355070..355174))
location: region:351100-355174:-1
so has part: feature:355070-355174:-1:exon
so has part: feature:354102-354207:-1:exon
so has part: feature:353302-353511:-1:exon
so has part: feature:352409-352537:-1:exon
so has part: feature:352091-352189:-1:exon
so has part: feature:351100-351234:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:355070-355174:-1:exon

position:355070:-1
position: 355070
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:354102-354207:-1:exon

position:354102:-1
position: 354102
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:354207:-1
position: 354207
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:353302-353511:-1:exon

position:353302:-1
position: 353302
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:353511:-1
position: 353511
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:352409-352537:-1:exon

position:352409:-1
position: 352409
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:352537:-1
position: 352537
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:352091-352189:-1:exon

position:352091:-1
position: 352091
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:352189:-1
position: 352189
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:351100-351234:-1:exon

position:351234:-1
position: 351234
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

RPS5
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: RPS5
product: ribosomal protein S5, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 38 ESTs, 21 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 65 samples with support for all annotated introns
transcript id: XM_041712771.1
SIO_010081: RPS5
subclass of: SO_0000673
so part of: RPS5
location: complement(join(351100..351234,352091..352189,352409..352537,353302..353511,354102..354207,354993..355015))
location: region:351100-355015:-1
so has part: feature:354993-355015:-1:exon
so has part: feature:354102-354207:-1:exon
so has part: feature:353302-353511:-1:exon
so has part: feature:352409-352537:-1:exon
so has part: feature:352091-352189:-1:exon
so has part: feature:351100-351234:-1:exon

position:355015:-1
position: 355015
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:354993-355015:-1:exon

position:354993:-1
position: 354993
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:354102-354207:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:353302-353511:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:352409-352537:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:352091-352189:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:351100-351234:-1:exon

RPS5
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: RPS5
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: 40S ribosomal protein S5
translation: MTDWETAPAVTETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKRFRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR
SIO_010081: RPS5
subclass of: SO_0000673
so part of: RPS5
location: complement(join(351166..351234,352091..352189,352409..352537,353302..353511,354102..354206))
location: region:351166-354206:-1
so has part: feature:354102-354206:-1:exon
so has part: feature:353302-353511:-1:exon
so has part: feature:352409-352537:-1:exon
so has part: feature:352091-352189:-1:exon
so has part: feature:351166-351234:-1:exon

XP_041568704.1
type: Protein
SIO_000068: ncbiprotein

position:351166:-1
position: 351166
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:354206:-1
position: 354206
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:354102-354206:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:353302-353511:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:352409-352537:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:352091-352189:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:351166-351234:-1:exon

RPS5
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: RPS5
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: 40S ribosomal protein S5
translation: MTDWETAPAVTETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKRFRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR
SIO_010081: RPS5
subclass of: SO_0000673
so part of: RPS5
location: complement(join(351166..351234,352091..352189,352409..352537,353302..353511,354102..354206))
location: region:351166-354206:-1
so has part: feature:354102-354206:-1:exon
so has part: feature:353302-353511:-1:exon
so has part: feature:352409-352537:-1:exon
so has part: feature:352091-352189:-1:exon
so has part: feature:351166-351234:-1:exon

XP_041568705.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:354102-354206:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:353302-353511:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:352409-352537:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:352091-352189:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:351166-351234:-1:exon

LOC121468690
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: LOC121468690
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(<372952..426566)
location: region:372952-426566:-1
so has part: feature:372952-426566:-1:exon
subclass of: SO_0000010

121468690
type: Gene
SIO_000068: ncbigene

position:372952:-1
position: 372952
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:426566:-1
position: 426566
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:372952-426566:-1:exon

LOC121468690
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: LOC121468690
product: valine--tRNA ligase-like
inference: similar to RNA sequence (same species):INSD:GGLD01126447.1
exception: annotated by transcript or proteomic data
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; added 123 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 92% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_041712681.1
SIO_010081: LOC121468690
subclass of: SO_0000673
so part of: LOC121468690
location: complement(join(<372952..373114,373570..373628,375156..375231,376598..376664,378454..378558,380742..380885,382985..383055,384789..384894,387329..387419,388824..389006,389270..389311,389883..389986,392014..392138,393442..393532,393819..393919,395014..395122,402762..402881,402960..403041,406114..406278,408275..408399,410703..410803,412507..412594,414422..414600,416705..416891,420196..420342,423579..423919,426504..426566))
location: region:372952-426566:-1
so has part: feature:426504-426566:-1:exon
so has part: feature:423579-423919:-1:exon
so has part: feature:420196-420342:-1:exon
so has part: feature:416705-416891:-1:exon
so has part: feature:414422-414600:-1:exon
so has part: feature:412507-412594:-1:exon
so has part: feature:410703-410803:-1:exon
so has part: feature:408275-408399:-1:exon
so has part: feature:406114-406278:-1:exon
so has part: feature:402960-403041:-1:exon
so has part: feature:402762-402881:-1:exon
so has part: feature:395014-395122:-1:exon
so has part: feature:393819-393919:-1:exon
so has part: feature:393442-393532:-1:exon
so has part: feature:392014-392138:-1:exon
so has part: feature:389883-389986:-1:exon
so has part: feature:389270-389311:-1:exon
so has part: feature:388824-389006:-1:exon
so has part: feature:387329-387419:-1:exon
so has part: feature:384789-384894:-1:exon
so has part: feature:382985-383055:-1:exon
so has part: feature:380742-380885:-1:exon
so has part: feature:378454-378558:-1:exon
so has part: feature:376598-376664:-1:exon
so has part: feature:375156-375231:-1:exon
so has part: feature:373570-373628:-1:exon
so has part: feature:372952-373114:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:426504-426566:-1:exon

position:426504:-1
position: 426504
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:423579-423919:-1:exon

position:423579:-1
position: 423579
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:423919:-1
position: 423919
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:420196-420342:-1:exon

position:420196:-1
position: 420196
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:420342:-1
position: 420342
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:416705-416891:-1:exon

position:416705:-1
position: 416705
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:416891:-1
position: 416891
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:414422-414600:-1:exon

position:414422:-1
position: 414422
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:414600:-1
position: 414600
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:412507-412594:-1:exon

position:412507:-1
position: 412507
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:412594:-1
position: 412594
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:410703-410803:-1:exon

position:410703:-1
position: 410703
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:410803:-1
position: 410803
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:408275-408399:-1:exon

position:408275:-1
position: 408275
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:408399:-1
position: 408399
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:406114-406278:-1:exon

position:406114:-1
position: 406114
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:406278:-1
position: 406278
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:402960-403041:-1:exon

position:402960:-1
position: 402960
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:403041:-1
position: 403041
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:402762-402881:-1:exon

position:402762:-1
position: 402762
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:402881:-1
position: 402881
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:395014-395122:-1:exon

position:395014:-1
position: 395014
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:395122:-1
position: 395122
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:393819-393919:-1:exon

position:393819:-1
position: 393819
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:393919:-1
position: 393919
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:393442-393532:-1:exon

position:393442:-1
position: 393442
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:393532:-1
position: 393532
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:392014-392138:-1:exon

position:392014:-1
position: 392014
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:392138:-1
position: 392138
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:389883-389986:-1:exon

position:389883:-1
position: 389883
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:389986:-1
position: 389986
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:389270-389311:-1:exon

position:389270:-1
position: 389270
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:389311:-1
position: 389311
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:388824-389006:-1:exon

position:388824:-1
position: 388824
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:389006:-1
position: 389006
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:387329-387419:-1:exon

position:387329:-1
position: 387329
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:387419:-1
position: 387419
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:384789-384894:-1:exon

position:384789:-1
position: 384789
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:384894:-1
position: 384894
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:382985-383055:-1:exon

position:382985:-1
position: 382985
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:383055:-1
position: 383055
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 22
SIO_000628: feature:380742-380885:-1:exon

position:380742:-1
position: 380742
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:380885:-1
position: 380885
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 23
SIO_000628: feature:378454-378558:-1:exon

position:378454:-1
position: 378454
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:378558:-1
position: 378558
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 24
SIO_000628: feature:376598-376664:-1:exon

position:376598:-1
position: 376598
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:376664:-1
position: 376664
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 25
SIO_000628: feature:375156-375231:-1:exon

position:375156:-1
position: 375156
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:375231:-1
position: 375231
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 26
SIO_000628: feature:373570-373628:-1:exon

position:373570:-1
position: 373570
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:373628:-1
position: 373628
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 27
SIO_000628: feature:372952-373114:-1:exon

position:373114:-1
position: 373114
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC121468690
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: LOC121468690
inference: similar to RNA sequence (same species):INSD:GGLD01126447.1
exception: annotated by transcript or proteomic data
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; added 123 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: valine--tRNA ligase-like
translation: MATPPVLLLPPSSSSSSSSLRVLIAARFSGCPPPHLEQIPPDLDLGGVPWAPPLLRTPGGAFFGGGAAALLLSPPEMRGRDPPEAALVRQWVTFGEGELSAAAALAMGGPPQERPRGLQELRRGLGALEAHLGRGRRFLVGDSVTLADVTVTCALLGPFTQLLDPPARAPFPGVSRWFLTCAHLPQFRAVLGEVRLCGGEGHPQSPPQSPPETPQSPQTHGSAVGHSQGGPNLGVPGGPNLGVPGGPEPPTPPKSAAQLKKEAKKREKMEKFQQKQEKNRELQAQGKVKAGRARRELRGLSYETPTPPGCKKDVGGPLPESYSPGYVEAAWYSWWEKEGFFRPEFGRSLETPNPRGVFVMCLPPPNVTGTLHLGHALTAAIQDTLTRWHRMRGLTTLWAPGCDHAGIATQVVVERRLQRCRGVTRHQLGREAFLAEVWRWKEEKGDRIYQQLRRLGASMDWERACFTMDPKMSRAVTEAFVRLHEKGLIYRSRRIVHWSCALRSAISDIEVEKKELGGRTLLRVPGYEEPVEFGVLVSFAYPLEGAGPGEPPEVVVATTRLETMLGDEGVAVHPEDPRYQHLRGRYVLHPLTGRRLPVLHDPFVDPEFGTGAVKITPAHDAADFEVGRRHGLSVSEVIGEDGTMVNVPPPFQGMPRFQARRTLMDTLKALGLFRGVTENPMVVPVCSRSKDILEPRAVPQCDTGCPTAAPKDILEPRAVAQWFVPLWGSGRGGPAGAVRSGELRLHPPGHARTWFTWMDNIRDWCISRQLWWGHRIPAYFVTISDPRVPPGEEEDERFWVSGRTEDEARSKAAATFGVTPAAVSLRQDQDVLDTWFSSGLFPFSIFGWPEQGAVLSPDPDLERFYPGSLLETGHDILFFWVARMVMLGLALTGQLPFRQVYLHAIVRDAHGRKMSKSLGNVIDPLDVITGTSLQELHLQLENSNLEPAELERAREGQRDFPLMGSPECGTDALRFALCALHGRDINLDVGRVLGYRHFCNKPKKPQNHPKSPRVPPGRDINLDVGRVLGYRHFCNKVWNGARFVLRARGEGYRPPPDGQECVKPILARGTPTQPEGVSGGPDGGDEEEEEEEEKGD
SIO_010081: LOC121468690
subclass of: SO_0000673
so part of: LOC121468690
location: complement(join(<372952..373114,373570..373628,375156..375231,376598..376664,378454..378558,380742..380885,382985..383055,384789..384894,387329..387419,388824..389006,389270..389311,389883..389986,392014..392138,393442..393532,393819..393919,395014..395122,402762..402881,402960..403041,406114..406278,408275..408399,410703..410803,412507..412594,414422..414600,416705..416891,420196..420342,423579..423914))
location: region:372952-423914:-1
so has part: feature:423579-423914:-1:exon
so has part: feature:420196-420342:-1:exon
so has part: feature:416705-416891:-1:exon
so has part: feature:414422-414600:-1:exon
so has part: feature:412507-412594:-1:exon
so has part: feature:410703-410803:-1:exon
so has part: feature:408275-408399:-1:exon
so has part: feature:406114-406278:-1:exon
so has part: feature:402960-403041:-1:exon
so has part: feature:402762-402881:-1:exon
so has part: feature:395014-395122:-1:exon
so has part: feature:393819-393919:-1:exon
so has part: feature:393442-393532:-1:exon
so has part: feature:392014-392138:-1:exon
so has part: feature:389883-389986:-1:exon
so has part: feature:389270-389311:-1:exon
so has part: feature:388824-389006:-1:exon
so has part: feature:387329-387419:-1:exon
so has part: feature:384789-384894:-1:exon
so has part: feature:382985-383055:-1:exon
so has part: feature:380742-380885:-1:exon
so has part: feature:378454-378558:-1:exon
so has part: feature:376598-376664:-1:exon
so has part: feature:375156-375231:-1:exon
so has part: feature:373570-373628:-1:exon
so has part: feature:372952-373114:-1:exon

XP_041568615.1
type: Protein
SIO_000068: ncbiprotein

position:423914:-1
position: 423914
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:423579-423914:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:420196-420342:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:416705-416891:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:414422-414600:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:412507-412594:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:410703-410803:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:408275-408399:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:406114-406278:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:402960-403041:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:402762-402881:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:395014-395122:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:393819-393919:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:393442-393532:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:392014-392138:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:389883-389986:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:389270-389311:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:388824-389006:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:387329-387419:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:384789-384894:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:382985-383055:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:380742-380885:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:378454-378558:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:376598-376664:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:375156-375231:-1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:373570-373628:-1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:372952-373114:-1:exon

LSM2
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: LSM2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(429625..438361)
location: region:429625-438361:-1
so has part: feature:429625-438361:-1:exon
subclass of: SO_0000010

121468726
type: Gene
SIO_000068: ncbigene

position:429625:-1
position: 429625
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:438361:-1
position: 438361
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:429625-438361:-1:exon

LSM2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: LSM2
product: LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 105 samples with support for all annotated introns
transcript id: XM_041712779.1
SIO_010081: LSM2
subclass of: SO_0000673
so part of: LSM2
location: complement(join(429625..430114,432116..432175,433265..433295,436809..436876,438312..438361))
location: region:429625-438361:-1
so has part: feature:438312-438361:-1:exon
so has part: feature:436809-436876:-1:exon
so has part: feature:433265-433295:-1:exon
so has part: feature:432116-432175:-1:exon
so has part: feature:429625-430114:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:438312-438361:-1:exon

position:438312:-1
position: 438312
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:436809-436876:-1:exon

position:436809:-1
position: 436809
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:436876:-1
position: 436876
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:433265-433295:-1:exon

position:433265:-1
position: 433265
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:433295:-1
position: 433295
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:432116-432175:-1:exon

position:432116:-1
position: 432116
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:432175:-1
position: 432175
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:429625-430114:-1:exon

position:430114:-1
position: 430114
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LSM2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: LSM2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: U6 snRNA-associated Sm-like protein LSm2
translation: MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNCFIRGSVVRYVQLPADEVDTQLLQDAARKEALQQKQ
SIO_010081: LSM2
subclass of: SO_0000673
so part of: LSM2
location: complement(join(429989..430114,432116..432175,433265..433295,436809..436876,438312..438314))
location: region:429989-438314:-1
so has part: feature:438312-438314:-1:exon
so has part: feature:436809-436876:-1:exon
so has part: feature:433265-433295:-1:exon
so has part: feature:432116-432175:-1:exon
so has part: feature:429989-430114:-1:exon

XP_041568713.1
type: Protein
SIO_000068: ncbiprotein

position:429989:-1
position: 429989
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:438314:-1
position: 438314
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:438312-438314:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:436809-436876:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:433265-433295:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:432116-432175:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:429989-430114:-1:exon

LOC121468717
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: LOC121468717
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(462231..482262)
location: region:462231-482262:-1
so has part: feature:462231-482262:-1:exon
subclass of: SO_0000010

121468717
type: Gene
SIO_000068: ncbigene

position:462231:-1
position: 462231
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:482262:-1
position: 482262
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:462231-482262:-1:exon

LOC121468717
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: LOC121468717
product: tripartite motif-containing protein 15-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 14 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_041712754.1
SIO_010081: LOC121468717
subclass of: SO_0000673
so part of: LOC121468717
location: complement(join(462231..462828,466292..466312,466886..466906,467082..467102,467190..467210,468006..468026,468182..468202,468370..468390,468876..468896,469385..469405,469764..469784,470416..470436,471093..471113,472479..472496,472601..472621,472811..472831,473158..473178,473574..473594,473868..473888,474780..474800,475510..475530,475631..475651,475746..475766,476406..476426,476757..476777,477117..477137,477973..477993,478141..478161,479052..479072,479231..479251,480301..480318,482215..482262))
location: region:462231-482262:-1
so has part: feature:482215-482262:-1:exon
so has part: feature:480301-480318:-1:exon
so has part: feature:479231-479251:-1:exon
so has part: feature:479052-479072:-1:exon
so has part: feature:478141-478161:-1:exon
so has part: feature:477973-477993:-1:exon
so has part: feature:477117-477137:-1:exon
so has part: feature:476757-476777:-1:exon
so has part: feature:476406-476426:-1:exon
so has part: feature:475746-475766:-1:exon
so has part: feature:475631-475651:-1:exon
so has part: feature:475510-475530:-1:exon
so has part: feature:474780-474800:-1:exon
so has part: feature:473868-473888:-1:exon
so has part: feature:473574-473594:-1:exon
so has part: feature:473158-473178:-1:exon
so has part: feature:472811-472831:-1:exon
so has part: feature:472601-472621:-1:exon
so has part: feature:472479-472496:-1:exon
so has part: feature:471093-471113:-1:exon
so has part: feature:470416-470436:-1:exon
so has part: feature:469764-469784:-1:exon
so has part: feature:469385-469405:-1:exon
so has part: feature:468876-468896:-1:exon
so has part: feature:468370-468390:-1:exon
so has part: feature:468182-468202:-1:exon
so has part: feature:468006-468026:-1:exon
so has part: feature:467190-467210:-1:exon
so has part: feature:467082-467102:-1:exon
so has part: feature:466886-466906:-1:exon
so has part: feature:466292-466312:-1:exon
so has part: feature:462231-462828:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:482215-482262:-1:exon

position:482215:-1
position: 482215
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:480301-480318:-1:exon

position:480301:-1
position: 480301
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:480318:-1
position: 480318
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:479231-479251:-1:exon

position:479231:-1
position: 479231
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:479251:-1
position: 479251
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:479052-479072:-1:exon

position:479052:-1
position: 479052
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:479072:-1
position: 479072
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:478141-478161:-1:exon

position:478141:-1
position: 478141
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:478161:-1
position: 478161
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:477973-477993:-1:exon

position:477973:-1
position: 477973
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:477993:-1
position: 477993
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:477117-477137:-1:exon

position:477117:-1
position: 477117
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:477137:-1
position: 477137
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:476757-476777:-1:exon

position:476757:-1
position: 476757
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:476777:-1
position: 476777
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:476406-476426:-1:exon

position:476406:-1
position: 476406
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:476426:-1
position: 476426
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:475746-475766:-1:exon

position:475746:-1
position: 475746
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:475766:-1
position: 475766
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:475631-475651:-1:exon

position:475631:-1
position: 475631
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:475651:-1
position: 475651
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:475510-475530:-1:exon

position:475510:-1
position: 475510
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:475530:-1
position: 475530
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:474780-474800:-1:exon

position:474780:-1
position: 474780
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:474800:-1
position: 474800
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:473868-473888:-1:exon

position:473868:-1
position: 473868
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:473888:-1
position: 473888
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:473574-473594:-1:exon

position:473574:-1
position: 473574
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:473594:-1
position: 473594
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:473158-473178:-1:exon

position:473158:-1
position: 473158
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:473178:-1
position: 473178
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:472811-472831:-1:exon

position:472811:-1
position: 472811
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:472831:-1
position: 472831
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:472601-472621:-1:exon

position:472601:-1
position: 472601
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:472621:-1
position: 472621
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:472479-472496:-1:exon

position:472479:-1
position: 472479
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:472496:-1
position: 472496
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:471093-471113:-1:exon

position:471093:-1
position: 471093
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:471113:-1
position: 471113
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:470416-470436:-1:exon

position:470416:-1
position: 470416
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:470436:-1
position: 470436
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 22
SIO_000628: feature:469764-469784:-1:exon

position:469764:-1
position: 469764
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:469784:-1
position: 469784
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 23
SIO_000628: feature:469385-469405:-1:exon

position:469385:-1
position: 469385
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:469405:-1
position: 469405
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 24
SIO_000628: feature:468876-468896:-1:exon

position:468876:-1
position: 468876
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:468896:-1
position: 468896
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 25
SIO_000628: feature:468370-468390:-1:exon

position:468370:-1
position: 468370
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:468390:-1
position: 468390
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 26
SIO_000628: feature:468182-468202:-1:exon

position:468182:-1
position: 468182
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:468202:-1
position: 468202
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 27
SIO_000628: feature:468006-468026:-1:exon

position:468006:-1
position: 468006
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:468026:-1
position: 468026
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 28
SIO_000628: feature:467190-467210:-1:exon

position:467190:-1
position: 467190
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:467210:-1
position: 467210
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 29
SIO_000628: feature:467082-467102:-1:exon

position:467082:-1
position: 467082
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:467102:-1
position: 467102
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 30
SIO_000628: feature:466886-466906:-1:exon

position:466886:-1
position: 466886
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:466906:-1
position: 466906
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 31
SIO_000628: feature:466292-466312:-1:exon

position:466292:-1
position: 466292
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:466312:-1
position: 466312
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 32
SIO_000628: feature:462231-462828:-1:exon

position:462828:-1
position: 462828
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC121468717
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: LOC121468717
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: tripartite motif-containing protein 15-like
translation: MEPGENSALGDSSSKLKERDRKITKLAAEIRRLTALLAERDSGLRKLRAELAKCDATIRIFTVELGERHTKIGELTADVEAFTKQLQARDAQIRENEAEIGYLKELLGERDSVIRKMREELEALKDFGEIDKTLEELRTALEQRDREIEQRDREIEQRDREIEQRDREIEQRDREIERRDKQIAEMNAELEESRLRIWWCLEEHRKEEEKVAHITLDPLTSHPRLVLSSDGLSARWRYGGADPPASADRFTASPCVLGSPGFTAGRHTWTVSVAEGPFCAVGVSRDSVPRQNPSASFGPAAGVWAVQRWGNLGRALTEPPTALAVPRVPRRLRVALDYDGGRVAFFDGDRRSPTPLFAFPAAAFAGERVRPWFWLELGEISIVR
SIO_010081: LOC121468717
subclass of: SO_0000673
so part of: LOC121468717
location: complement(join(462308..462828,466292..466312,466886..466906,467082..467102,467190..467210,468006..468026,468182..468202,468370..468390,468876..468896,469385..469405,469764..469784,470416..470436,471093..471113,472479..472496,472601..472621,472811..472831,473158..473178,473574..473594,473868..473888,474780..474800,475510..475530,475631..475651,475746..475766,476406..476426,476757..476777,477117..477137,477973..477993,478141..478161,479052..479072,479231..479251,480301..480318,482215..482224))
location: region:462308-482224:-1
so has part: feature:482215-482224:-1:exon
so has part: feature:480301-480318:-1:exon
so has part: feature:479231-479251:-1:exon
so has part: feature:479052-479072:-1:exon
so has part: feature:478141-478161:-1:exon
so has part: feature:477973-477993:-1:exon
so has part: feature:477117-477137:-1:exon
so has part: feature:476757-476777:-1:exon
so has part: feature:476406-476426:-1:exon
so has part: feature:475746-475766:-1:exon
so has part: feature:475631-475651:-1:exon
so has part: feature:475510-475530:-1:exon
so has part: feature:474780-474800:-1:exon
so has part: feature:473868-473888:-1:exon
so has part: feature:473574-473594:-1:exon
so has part: feature:473158-473178:-1:exon
so has part: feature:472811-472831:-1:exon
so has part: feature:472601-472621:-1:exon
so has part: feature:472479-472496:-1:exon
so has part: feature:471093-471113:-1:exon
so has part: feature:470416-470436:-1:exon
so has part: feature:469764-469784:-1:exon
so has part: feature:469385-469405:-1:exon
so has part: feature:468876-468896:-1:exon
so has part: feature:468370-468390:-1:exon
so has part: feature:468182-468202:-1:exon
so has part: feature:468006-468026:-1:exon
so has part: feature:467190-467210:-1:exon
so has part: feature:467082-467102:-1:exon
so has part: feature:466886-466906:-1:exon
so has part: feature:466292-466312:-1:exon
so has part: feature:462308-462828:-1:exon

XP_041568688.1
type: Protein
SIO_000068: ncbiprotein

position:462308:-1
position: 462308
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:482224:-1
position: 482224
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:482215-482224:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:480301-480318:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:479231-479251:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:479052-479072:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:478141-478161:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:477973-477993:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:477117-477137:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:476757-476777:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:476406-476426:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:475746-475766:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:475631-475651:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:475510-475530:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:474780-474800:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:473868-473888:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:473574-473594:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:473158-473178:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:472811-472831:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:472601-472621:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:472479-472496:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:471093-471113:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:470416-470436:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:469764-469784:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:469385-469405:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:468876-468896:-1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:468370-468390:-1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:468182-468202:-1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:468006-468026:-1:exon

urn:…
SIO_000300: 28
SIO_000628: feature:467190-467210:-1:exon

urn:…
SIO_000300: 29
SIO_000628: feature:467082-467102:-1:exon

urn:…
SIO_000300: 30
SIO_000628: feature:466886-466906:-1:exon

urn:…
SIO_000300: 31
SIO_000628: feature:466292-466312:-1:exon

urn:…
SIO_000300: 32
SIO_000628: feature:462308-462828:-1:exon

RACK1
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: RACK1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 486063..512425
location: region:486063-512425:1
so has part: feature:486063-512425:1:exon
subclass of: SO_0000010

121468719
type: Gene
SIO_000068: ncbigene

position:486063:1
position: 486063
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:512425:1
position: 512425
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:486063-512425:1:exon

RACK1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: RACK1
product: receptor for activated C kinase 1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 mRNAs, 113 ESTs, 4 long SRA reads, 26 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 165 samples with support for all annotated introns
transcript id: XM_041712756.1
SIO_010081: RACK1
subclass of: SO_0000673
so part of: RACK1
location: join(486063..486314,490081..490252,497344..497491,499292..499387,499472..499582,505077..505217,509957..510067,512284..512425)
location: region:486063-512425:1
so has part: feature:486063-486314:1:exon
so has part: feature:490081-490252:1:exon
so has part: feature:497344-497491:1:exon
so has part: feature:499292-499387:1:exon
so has part: feature:499472-499582:1:exon
so has part: feature:505077-505217:1:exon
so has part: feature:509957-510067:1:exon
so has part: feature:512284-512425:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:486063-486314:1:exon

position:486314:1
position: 486314
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:490081-490252:1:exon

position:490081:1
position: 490081
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:490252:1
position: 490252
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:497344-497491:1:exon

position:497344:1
position: 497344
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:497491:1
position: 497491
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:499292-499387:1:exon

position:499292:1
position: 499292
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:499387:1
position: 499387
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:499472-499582:1:exon

position:499472:1
position: 499472
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:499582:1
position: 499582
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:505077-505217:1:exon

position:505077:1
position: 505077
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:505217:1
position: 505217
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:509957-510067:1:exon

position:509957:1
position: 509957
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:510067:1
position: 510067
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:512284-512425:1:exon

position:512284:1
position: 512284
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

RACK1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: RACK1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: receptor of activated protein C kinase 1
translation: MTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDVINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGTR
SIO_010081: RACK1
subclass of: SO_0000673
so part of: RACK1
location: join(486206..486314,490081..490252,497344..497491,499292..499387,499472..499582,505077..505217,509957..510067,512284..512349)
location: region:486206-512349:1
so has part: feature:486206-486314:1:exon
so has part: feature:490081-490252:1:exon
so has part: feature:497344-497491:1:exon
so has part: feature:499292-499387:1:exon
so has part: feature:499472-499582:1:exon
so has part: feature:505077-505217:1:exon
so has part: feature:509957-510067:1:exon
so has part: feature:512284-512349:1:exon

XP_041568690.1
type: Protein
SIO_000068: ncbiprotein

position:486206:1
position: 486206
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:512349:1
position: 512349
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:486206-486314:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:490081-490252:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:497344-497491:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:499292-499387:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:499472-499582:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:505077-505217:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:509957-510067:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:512284-512349:1:exon

LOC121468739
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: LOC121468739
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 490426..491252
location: region:490426-491252:1
so has part: feature:490426-491252:1:exon
subclass of: SO_0000011

121468739
type: Gene
SIO_000068: ncbigene

position:490426:1
position: 490426
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:491252:1
position: 491252
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:490426-491252:1:exon

LOC121468739
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 59729
nc RNA class: lncRNA
gene: LOC121468739
product: uncharacterized LOC121468739
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 14 samples with support for all annotated introns
transcript id: XR_005978561.1
SIO_010081: LOC121468739
subclass of: SO_0000673
so part of: LOC121468739
location: join(490426..490991,491132..491252)
location: region:490426-491252:1
so has part: feature:490426-490991:1:exon
so has part: feature:491132-491252:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:490426-490991:1:exon

position:490991:1
position: 490991
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:491132-491252:1:exon

position:491132:1
position: 491132
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC121468737
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: LOC121468737
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(491172..491524)
location: region:491172-491524:-1
so has part: feature:491172-491524:-1:exon
subclass of: SO_0000011

121468737
type: Gene
SIO_000068: ncbigene

position:491172:-1
position: 491172
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:491524:-1
position: 491524
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:491172-491524:-1:exon

LOC121468737
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 59729
nc RNA class: lncRNA
gene: LOC121468737
product: uncharacterized LOC121468737
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 21 samples with support for all annotated introns
transcript id: XR_005978558.1
SIO_010081: LOC121468737
subclass of: SO_0000673
so part of: LOC121468737
location: complement(join(491172..491206,491360..491524))
location: region:491172-491524:-1
so has part: feature:491360-491524:-1:exon
so has part: feature:491172-491206:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:491360-491524:-1:exon

position:491360:-1
position: 491360
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:491172-491206:-1:exon

position:491206:-1
position: 491206
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC121468736
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: LOC121468736
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 507274..509726
location: region:507274-509726:1
so has part: feature:507274-509726:1:exon
subclass of: SO_0000011

121468736
type: Gene
SIO_000068: ncbigene

position:507274:1
position: 507274
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:509726:1
position: 509726
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:507274-509726:1:exon

LOC121468736
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 59729
nc RNA class: lncRNA
gene: LOC121468736
product: uncharacterized LOC121468736, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns
transcript id: XR_005978557.1
SIO_010081: LOC121468736
subclass of: SO_0000673
so part of: LOC121468736
location: join(507274..507296,509238..509259,509293..509726)
location: region:507274-509726:1
so has part: feature:507274-507296:1:exon
so has part: feature:509238-509259:1:exon
so has part: feature:509293-509726:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:507274-507296:1:exon

position:507296:1
position: 507296
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:509238-509259:1:exon

position:509238:1
position: 509238
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:509259:1
position: 509259
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:509293-509726:1:exon

position:509293:1
position: 509293
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC121468736
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 59729
nc RNA class: lncRNA
gene: LOC121468736
product: uncharacterized LOC121468736, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
transcript id: XR_005978556.1
SIO_010081: LOC121468736
subclass of: SO_0000673
so part of: LOC121468736
location: join(508212..508300,509238..509259,509293..509726)
location: region:508212-509726:1
so has part: feature:508212-508300:1:exon
so has part: feature:509238-509259:1:exon
so has part: feature:509293-509726:1:exon

position:508212:1
position: 508212
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:508212-508300:1:exon

position:508300:1
position: 508300
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:509238-509259:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:509293-509726:1:exon

LOC121468729
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: LOC121468729
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(513395..514386)
location: region:513395-514386:-1
so has part: feature:513395-514386:-1:exon
subclass of: SO_0000011

121468729
type: Gene
SIO_000068: ncbigene

position:513395:-1
position: 513395
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:514386:-1
position: 514386
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:513395-514386:-1:exon

LOC121468729
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 59729
nc RNA class: lncRNA
gene: LOC121468729
product: uncharacterized LOC121468729
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 67 samples with support for all annotated introns
transcript id: XR_005978547.1
SIO_010081: LOC121468729
subclass of: SO_0000673
so part of: LOC121468729
location: complement(join(513395..514035,514142..514386))
location: region:513395-514386:-1
so has part: feature:514142-514386:-1:exon
so has part: feature:513395-514035:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:514142-514386:-1:exon

position:514142:-1
position: 514142
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:513395-514035:-1:exon

position:514035:-1
position: 514035
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

TRIM41
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: TRIM41
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(515442..526515)
location: region:515442-526515:-1
so has part: feature:515442-526515:-1:exon
subclass of: SO_0000010

121468712
type: Gene
SIO_000068: ncbigene

position:515442:-1
position: 515442
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:526515:-1
position: 526515
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:515442-526515:-1:exon

TRIM41
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: TRIM41
product: tripartite motif containing 41
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 27 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 39 samples with support for all annotated introns
transcript id: XM_041712730.1
SIO_010081: TRIM41
subclass of: SO_0000673
so part of: TRIM41
location: complement(join(515442..515955,518014..518141,518326..518348,522445..522675,524240..524335,525563..526515))
location: region:515442-526515:-1
so has part: feature:525563-526515:-1:exon
so has part: feature:524240-524335:-1:exon
so has part: feature:522445-522675:-1:exon
so has part: feature:518326-518348:-1:exon
so has part: feature:518014-518141:-1:exon
so has part: feature:515442-515955:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:525563-526515:-1:exon

position:525563:-1
position: 525563
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:524240-524335:-1:exon

position:524240:-1
position: 524240
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:524335:-1
position: 524335
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:522445-522675:-1:exon

position:522445:-1
position: 522445
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:522675:-1
position: 522675
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:518326-518348:-1:exon

position:518326:-1
position: 518326
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:518348:-1
position: 518348
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:518014-518141:-1:exon

position:518014:-1
position: 518014
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:518141:-1
position: 518141
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:515442-515955:-1:exon

position:515955:-1
position: 515955
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

TRIM41
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: TRIM41
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: E3 ubiquitin-protein ligase TRIM41
translation: MAALAAAAARPDPVETLQEEAICAICLDYFADPVSIGCGHNFCRGCISRLWAREEEEDEDEDEDEDEDEEEDALDVEQEEEEDEEENGGGGAVEEDEDDEMWEEEEEEDEEGALWEEPAEDEDGEDDDEEEEEEEEEPSTWRDEDGLYFTDNDYEDAMEEDVEEEEEEEEEEHEDDDDDDEDDEDHHPTPPLFTCPQCRKSFFQRDFRPNLQLANMVQIIRELHPRPAGVPGILGVPGVSSGVPAAPGGPPELCPEHQEPLKLFCQEEQAAICVVCREARQHRRHSVLPLDEAVQECKKQLQRHLEPLREQLDAVLKQKSSEEEKISVLRDQLRAEAQDLEDAVAALQRFVAAERALQLRRLRERHEAQLALQRRNVAALELHRSALQRRIAQAEAAARQDELQMLRDIKGTFLRCENIKFQEPEMVPVDLGKKFRNCFLQDAVMRKMEKVFSKVPQADITLDPSTAHPRLILSHDRRSVRLSERRADVSRRCDGDLCVLGTPGFGAGRHYWEVEVGGRRGWAVGAAGETHQHRDKTGAASPKREIWALGASGKKYQALTATEQTALAPGEEPRRFGVYLDYERGQLGFYNAESMSHIHTFHIRCRQRVFPFFRVLAKGTRIRICTR
SIO_010081: TRIM41
subclass of: SO_0000673
so part of: TRIM41
location: complement(join(515444..515955,518014..518141,518326..518348,522445..522675,524240..524335,525563..526456))
location: region:515444-526456:-1
so has part: feature:525563-526456:-1:exon
so has part: feature:524240-524335:-1:exon
so has part: feature:522445-522675:-1:exon
so has part: feature:518326-518348:-1:exon
so has part: feature:518014-518141:-1:exon
so has part: feature:515444-515955:-1:exon

XP_041568664.1
type: Protein
SIO_000068: ncbiprotein

position:515444:-1
position: 515444
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:526456:-1
position: 526456
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:525563-526456:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:524240-524335:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:522445-522675:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:518326-518348:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:518014-518141:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:515444-515955:-1:exon

TRNAV-CAC
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: TRNAV-CAC
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: 529334..529406
location: region:529334-529406:1
so has part: feature:529334-529406:1:exon
subclass of: SO_0000663

121468760
type: Gene
SIO_000068: ncbigene

position:529334:1
position: 529334
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:529406:1
position: 529406
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:529334-529406:1:exon

TRNAV-CAC
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 59729
gene: TRNAV-CAC
product: tRNA-Val
inference: COORDINATES: profile:tRNAscan-SE:2.0.4
note: transfer RNA valine (anticodon CAC); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:529367..529369,aa:Val,seq:cac)
SIO_010081: TRNAV-CAC
subclass of: SO_0000673
so part of: TRNAV-CAC
location: 529334..529406
location: region:529334-529406:1
so has part: feature:529334-529406:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:529334-529406:1:exon

TRNAE-CUC
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: TRNAE-CUC
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: 531174..531245
location: region:531174-531245:1
so has part: feature:531174-531245:1:exon
subclass of: SO_0000663

121468765
type: Gene
SIO_000068: ncbigene

position:531174:1
position: 531174
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:531245:1
position: 531245
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:531174-531245:1:exon

TRNAE-CUC
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 59729
gene: TRNAE-CUC
product: tRNA-Glu
inference: COORDINATES: profile:tRNAscan-SE:2.0.4
note: transfer RNA glutamic acid (anticodon CUC); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:531207..531209,aa:Glu,seq:ctc)
SIO_010081: TRNAE-CUC
subclass of: SO_0000673
so part of: TRNAE-CUC
location: 531174..531245
location: region:531174-531245:1
so has part: feature:531174-531245:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:531174-531245:1:exon

TRNAL-CAA
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: TRNAL-CAA
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: complement(532359..532463)
location: region:532359-532463:-1
so has part: feature:532359-532463:-1:exon
subclass of: SO_0000663

121468762
type: Gene
SIO_000068: ncbigene

position:532359:-1
position: 532359
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:532463:-1
position: 532463
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:532359-532463:-1:exon

TRNAL-CAA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 59729
gene: TRNAL-CAA
product: tRNA-Leu
inference: COORDINATES: profile:tRNAscan-SE:2.0.4
note: transfer RNA leucine (anticodon CAA); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:complement(532427..532429),aa:Leu,seq:caa)
SIO_010081: TRNAL-CAA
subclass of: SO_0000673
so part of: TRNAL-CAA
location: complement(join(532359..532404,532426..532463))
location: region:532359-532463:-1
so has part: feature:532426-532463:-1:exon
so has part: feature:532359-532404:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:532426-532463:-1:exon

position:532426:-1
position: 532426
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:532359-532404:-1:exon

position:532404:-1
position: 532404
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

TRNAK-CUU
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: TRNAK-CUU
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: complement(533166..533238)
location: region:533166-533238:-1
so has part: feature:533166-533238:-1:exon
subclass of: SO_0000663

121468763
type: Gene
SIO_000068: ncbigene

position:533166:-1
position: 533166
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:533238:-1
position: 533238
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:533166-533238:-1:exon

TRNAK-CUU
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 59729
gene: TRNAK-CUU
product: tRNA-Lys
inference: COORDINATES: profile:tRNAscan-SE:2.0.4
note: transfer RNA lysine (anticodon CUU); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:complement(533203..533205),aa:Lys,seq:ctt)
SIO_010081: TRNAK-CUU
subclass of: SO_0000673
so part of: TRNAK-CUU
location: complement(533166..533238)
location: region:533166-533238:-1
so has part: feature:533166-533238:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:533166-533238:-1:exon

TRNAK-CUU
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: TRNAK-CUU
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: complement(534172..534244)
location: region:534172-534244:-1
so has part: feature:534172-534244:-1:exon
subclass of: SO_0000663

121468764
type: Gene
SIO_000068: ncbigene

position:534172:-1
position: 534172
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:534244:-1
position: 534244
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:534172-534244:-1:exon

TRNAK-CUU
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 59729
gene: TRNAK-CUU
product: tRNA-Lys
inference: COORDINATES: profile:tRNAscan-SE:2.0.4
note: transfer RNA lysine (anticodon CUU); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:complement(534209..534211),aa:Lys,seq:ctt)
SIO_010081: TRNAK-CUU
subclass of: SO_0000673
so part of: TRNAK-CUU
location: complement(534172..534244)
location: region:534172-534244:-1
so has part: feature:534172-534244:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:534172-534244:-1:exon

TRNAV-CAC
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: TRNAV-CAC
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: 535248..535320
location: region:535248-535320:1
so has part: feature:535248-535320:1:exon
subclass of: SO_0000663

121468766
type: Gene
SIO_000068: ncbigene

position:535248:1
position: 535248
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:535320:1
position: 535320
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:535248-535320:1:exon

TRNAV-CAC
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 59729
gene: TRNAV-CAC
product: tRNA-Val
inference: COORDINATES: profile:tRNAscan-SE:2.0.4
note: transfer RNA valine (anticodon CAC); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:535281..535283,aa:Val,seq:cac)
SIO_010081: TRNAV-CAC
subclass of: SO_0000673
so part of: TRNAV-CAC
location: 535248..535320
location: region:535248-535320:1
so has part: feature:535248-535320:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:535248-535320:1:exon

TRNAV-CAC
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: TRNAV-CAC
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: 536335..536407
location: region:536335-536407:1
so has part: feature:536335-536407:1:exon
subclass of: SO_0000663

121468767
type: Gene
SIO_000068: ncbigene

position:536335:1
position: 536335
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:536407:1
position: 536407
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:536335-536407:1:exon

TRNAV-CAC
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 59729
gene: TRNAV-CAC
product: tRNA-Val
inference: COORDINATES: profile:tRNAscan-SE:2.0.4
note: transfer RNA valine (anticodon CAC); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:536368..536370,aa:Val,seq:cac)
SIO_010081: TRNAV-CAC
subclass of: SO_0000673
so part of: TRNAV-CAC
location: 536335..536407
location: region:536335-536407:1
so has part: feature:536335-536407:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:536335-536407:1:exon

TRNAE-CUC
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: TRNAE-CUC
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: 537635..537706
location: region:537635-537706:1
so has part: feature:537635-537706:1:exon
subclass of: SO_0000663

121468768
type: Gene
SIO_000068: ncbigene

position:537635:1
position: 537635
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:537706:1
position: 537706
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:537635-537706:1:exon

TRNAE-CUC
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 59729
gene: TRNAE-CUC
product: tRNA-Glu
inference: COORDINATES: profile:tRNAscan-SE:2.0.4
note: transfer RNA glutamic acid (anticodon CUC); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:537668..537670,aa:Glu,seq:ctc)
SIO_010081: TRNAE-CUC
subclass of: SO_0000673
so part of: TRNAE-CUC
location: 537635..537706
location: region:537635-537706:1
so has part: feature:537635-537706:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:537635-537706:1:exon

TRNAK-CUU
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: TRNAK-CUU
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: 538584..538656
location: region:538584-538656:1
so has part: feature:538584-538656:1:exon
subclass of: SO_0000663

121468761
type: Gene
SIO_000068: ncbigene

position:538584:1
position: 538584
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:538656:1
position: 538656
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:538584-538656:1:exon

TRNAK-CUU
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 59729
gene: TRNAK-CUU
product: tRNA-Lys
inference: COORDINATES: profile:tRNAscan-SE:2.0.4
note: transfer RNA lysine (anticodon CUU); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:538617..538619,aa:Lys,seq:ctt)
SIO_010081: TRNAK-CUU
subclass of: SO_0000673
so part of: TRNAK-CUU
location: 538584..538656
location: region:538584-538656:1
so has part: feature:538584-538656:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:538584-538656:1:exon

LOC100217673
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: LOC100217673
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 539727..557130
location: region:539727-557130:1
so has part: feature:539727-557130:1:exon
subclass of: SO_0000010

100217673
type: Gene
SIO_000068: ncbigene

position:539727:1
position: 539727
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:557130:1
position: 557130
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:539727-557130:1:exon

LOC100217673
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: LOC100217673
product: E3 ubiquitin-protein ligase TRIM7, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 21 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 15 samples with support for all annotated introns
transcript id: XM_041712740.1
SIO_010081: LOC100217673
subclass of: SO_0000673
so part of: LOC100217673
location: join(539727..539976,543000..543429,544406..544501,546835..547065,550099..550121,553146..553261,554345..554380,556330..557130)
location: region:539727-557130:1
so has part: feature:539727-539976:1:exon
so has part: feature:543000-543429:1:exon
so has part: feature:544406-544501:1:exon
so has part: feature:546835-547065:1:exon
so has part: feature:550099-550121:1:exon
so has part: feature:553146-553261:1:exon
so has part: feature:554345-554380:1:exon
so has part: feature:556330-557130:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:539727-539976:1:exon

position:539976:1
position: 539976
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:543000-543429:1:exon

position:543000:1
position: 543000
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:543429:1
position: 543429
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:544406-544501:1:exon

position:544406:1
position: 544406
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:544501:1
position: 544501
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:546835-547065:1:exon

position:546835:1
position: 546835
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:547065:1
position: 547065
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:550099-550121:1:exon

position:550099:1
position: 550099
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:550121:1
position: 550121
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:553146-553261:1:exon

position:553146:1
position: 553146
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:553261:1
position: 553261
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:554345-554380:1:exon

position:554345:1
position: 554345
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:554380:1
position: 554380
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:556330-557130:1:exon

position:556330:1
position: 556330
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC100217673
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: LOC100217673
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: E3 ubiquitin-protein ligase TRIM7 isoform X3
translation: MGEGKEWKETPFLPGNLQDEATCSVCLEFFKDPVSIPCGHNFCRSCIAKSWKELEMDFPCPQCREVFQEKNFRPNRQLGNISEIINQLAKRREKGGEEDEEEEGLCRKHREALKLFCKDDLRSICVVCDRSREHRAHAVVPVDEACEEYKEKIQGRLDFLKKERQELLEFKVNDDKKTQELLTTMSSERQKLLSDFERLRQFLRDHERLLLGQLEKMEQNVARRQNENISELSKVIAALNKLIADMEEKLRQRPLGLLQDVTGIIKRTDEVKYQKPVPVSTEMKIHVCNFSLKTVVLEKVLKKFREHLQDELGRGEKEDLTLDPDSANHLLILSADLKTVRMGCRKQELPDNPKRFDTNSRVLASAGFSSGRHFWEVEVGPSDGWAFGVAKESVRRKGLTQFSPEEGIWAVQQNGGRYWAVTSPQRTPLCVDHKLSRVRVYLDYEGEEVSFYDAENMKHIFTFNVAFKEKVFPLFSVCSTVTYIKLCP
SIO_010081: LOC100217673
subclass of: SO_0000673
so part of: LOC100217673
location: join(539957..539976,543000..543429,544406..544501,546835..547065,550099..550121,553146..553261,554345..554380,556330..556844)
location: region:539957-556844:1
so has part: feature:539957-539976:1:exon
so has part: feature:543000-543429:1:exon
so has part: feature:544406-544501:1:exon
so has part: feature:546835-547065:1:exon
so has part: feature:550099-550121:1:exon
so has part: feature:553146-553261:1:exon
so has part: feature:554345-554380:1:exon
so has part: feature:556330-556844:1:exon

XP_041568674.1
type: Protein
SIO_000068: ncbiprotein

position:539957:1
position: 539957
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:556844:1
position: 556844
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:539957-539976:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:543000-543429:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:544406-544501:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:546835-547065:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:550099-550121:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:553146-553261:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:554345-554380:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:556330-556844:1:exon

LOC100217673
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: LOC100217673
product: E3 ubiquitin-protein ligase TRIM7, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 14 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XM_041712739.1
SIO_010081: LOC100217673
subclass of: SO_0000673
so part of: LOC100217673
location: join(540015..540248,543000..543429,544406..544501,545195..545205,546846..547065,550099..550121,553146..553261,554345..554380,556330..557130)
location: region:540015-557130:1
so has part: feature:540015-540248:1:exon
so has part: feature:543000-543429:1:exon
so has part: feature:544406-544501:1:exon
so has part: feature:545195-545205:1:exon
so has part: feature:546846-547065:1:exon
so has part: feature:550099-550121:1:exon
so has part: feature:553146-553261:1:exon
so has part: feature:554345-554380:1:exon
so has part: feature:556330-557130:1:exon

position:540015:1
position: 540015
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:540015-540248:1:exon

position:540248:1
position: 540248
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:543000-543429:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:544406-544501:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:545195-545205:1:exon

position:545195:1
position: 545195
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:545205:1
position: 545205
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:546846-547065:1:exon

position:546846:1
position: 546846
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:550099-550121:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:553146-553261:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:554345-554380:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:556330-557130:1:exon

LOC100217673
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: LOC100217673
product: E3 ubiquitin-protein ligase TRIM7, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 21 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns
transcript id: XM_041712737.1
SIO_010081: LOC100217673
subclass of: SO_0000673
so part of: LOC100217673
location: join(540015..540248,543000..543429,544406..544501,546835..547065,550099..550121,553146..553261,554345..554380,556330..557130)
location: region:540015-557130:1
so has part: feature:540015-540248:1:exon
so has part: feature:543000-543429:1:exon
so has part: feature:544406-544501:1:exon
so has part: feature:546835-547065:1:exon
so has part: feature:550099-550121:1:exon
so has part: feature:553146-553261:1:exon
so has part: feature:554345-554380:1:exon
so has part: feature:556330-557130:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:540015-540248:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:543000-543429:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:544406-544501:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:546835-547065:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:550099-550121:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:553146-553261:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:554345-554380:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:556330-557130:1:exon

LOC100217673
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: LOC100217673
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: E3 ubiquitin-protein ligase TRIM7 isoform X2
translation: MSEAAAAAAGFLRRGCAERLPRSRWDPALTRFVPSRAVPMQNPGNLGRFGGVPPADGSAPRKETPFLPGNLQDEATCSVCLEFFKDPVSIPCGHNFCRSCIAKSWKELEMDFPCPQCREVFQEKNFRPNRQLGNISEIINQLAKRREKGGEEDEEEEGLCRKHREALKLFCKDDLRSICVVCDRSREHRAHAVVPVDEACEEYKEKIQGRLDFLKKERQELLEFKVNDDKKTQELLKTIVSERQKLLSDFERLRQFLRDHERLLLGQLEKMEQNVARRQNENISELSKVIAALNKLIADMEEKLRQRPLGLLQDVTGIIKRTDEVKYQKPVPVSTEMKIHVCNFSLKTVVLEKVLKKFREHLQDELGRGEKEDLTLDPDSANHLLILSADLKTVRMGCRKQELPDNPKRFDTNSRVLASAGFSSGRHFWEVEVGPSDGWAFGVAKESVRRKGLTQFSPEEGIWAVQQNGGRYWAVTSPQRTPLCVDHKLSRVRVYLDYEGEEVSFYDAENMKHIFTFNVAFKEKVFPLFSVCSTVTYIKLCP
SIO_010081: LOC100217673
subclass of: SO_0000673
so part of: LOC100217673
location: join(540067..540248,543000..543429,544406..544501,545195..545205,546846..547065,550099..550121,553146..553261,554345..554380,556330..556844)
location: region:540067-556844:1
so has part: feature:540067-540248:1:exon
so has part: feature:543000-543429:1:exon
so has part: feature:544406-544501:1:exon
so has part: feature:545195-545205:1:exon
so has part: feature:546846-547065:1:exon
so has part: feature:550099-550121:1:exon
so has part: feature:553146-553261:1:exon
so has part: feature:554345-554380:1:exon
so has part: feature:556330-556844:1:exon

XP_041568673.1
type: Protein
SIO_000068: ncbiprotein

position:540067:1
position: 540067
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:540067-540248:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:543000-543429:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:544406-544501:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:545195-545205:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:546846-547065:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:550099-550121:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:553146-553261:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:554345-554380:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:556330-556844:1:exon

LOC100217673
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: LOC100217673
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: E3 ubiquitin-protein ligase TRIM7 isoform X1
translation: MSEAAAAAAGFLRRGCAERLPRSRWDPALTRFVPSRAVPMQNPGNLGRFGGVPPADGSAPRKETPFLPGNLQDEATCSVCLEFFKDPVSIPCGHNFCRSCIAKSWKELEMDFPCPQCREVFQEKNFRPNRQLGNISEIINQLAKRREKGGEEDEEEEGLCRKHREALKLFCKDDLRSICVVCDRSREHRAHAVVPVDEACEEYKEKIQGRLDFLKKERQELLEFKVNDDKKTQELLTTMSSERQKLLSDFERLRQFLRDHERLLLGQLEKMEQNVARRQNENISELSKVIAALNKLIADMEEKLRQRPLGLLQDVTGIIKRTDEVKYQKPVPVSTEMKIHVCNFSLKTVVLEKVLKKFREHLQDELGRGEKEDLTLDPDSANHLLILSADLKTVRMGCRKQELPDNPKRFDTNSRVLASAGFSSGRHFWEVEVGPSDGWAFGVAKESVRRKGLTQFSPEEGIWAVQQNGGRYWAVTSPQRTPLCVDHKLSRVRVYLDYEGEEVSFYDAENMKHIFTFNVAFKEKVFPLFSVCSTVTYIKLCP
SIO_010081: LOC100217673
subclass of: SO_0000673
so part of: LOC100217673
location: join(540067..540248,543000..543429,544406..544501,546835..547065,550099..550121,553146..553261,554345..554380,556330..556844)
location: region:540067-556844:1
so has part: feature:540067-540248:1:exon
so has part: feature:543000-543429:1:exon
so has part: feature:544406-544501:1:exon
so has part: feature:546835-547065:1:exon
so has part: feature:550099-550121:1:exon
so has part: feature:553146-553261:1:exon
so has part: feature:554345-554380:1:exon
so has part: feature:556330-556844:1:exon

XP_041568671.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:540067-540248:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:543000-543429:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:544406-544501:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:546835-547065:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:550099-550121:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:553146-553261:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:554345-554380:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:556330-556844:1:exon

LOC121468738
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: LOC121468738
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(555420..556059)
location: region:555420-556059:-1
so has part: feature:555420-556059:-1:exon
subclass of: SO_0000011

121468738
type: Gene
SIO_000068: ncbigene

position:555420:-1
position: 555420
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:556059:-1
position: 556059
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:555420-556059:-1:exon

LOC121468738
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 59729
nc RNA class: lncRNA
gene: LOC121468738
product: uncharacterized LOC121468738
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XR_005978560.1
SIO_010081: LOC121468738
subclass of: SO_0000673
so part of: LOC121468738
location: complement(join(555420..555429,555550..555584,555716..555752,556017..556059))
location: region:555420-556059:-1
so has part: feature:556017-556059:-1:exon
so has part: feature:555716-555752:-1:exon
so has part: feature:555550-555584:-1:exon
so has part: feature:555420-555429:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:556017-556059:-1:exon

position:556017:-1
position: 556017
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:555716-555752:-1:exon

position:555716:-1
position: 555716
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:555752:-1
position: 555752
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:555550-555584:-1:exon

position:555550:-1
position: 555550
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:555584:-1
position: 555584
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:555420-555429:-1:exon

position:555429:-1
position: 555429
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

IL4I1
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: IL4I1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 560384..581751
location: region:560384-581751:1
so has part: feature:560384-581751:1:exon
subclass of: SO_0000010

100222394
type: Gene
SIO_000068: ncbigene

position:560384:1
position: 560384
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:581751:1
position: 581751
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:560384-581751:1:exon

IL4I1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: IL4I1
product: interleukin 4 induced 1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 91% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_041712682.1
SIO_010081: IL4I1
subclass of: SO_0000673
so part of: IL4I1
location: join(560384..560470,573444..573752,574216..574328,576445..576646,577598..577666,577867..578000,580680..581751)
location: region:560384-581751:1
so has part: feature:560384-560470:1:exon
so has part: feature:573444-573752:1:exon
so has part: feature:574216-574328:1:exon
so has part: feature:576445-576646:1:exon
so has part: feature:577598-577666:1:exon
so has part: feature:577867-578000:1:exon
so has part: feature:580680-581751:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:560384-560470:1:exon

position:560470:1
position: 560470
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:573444-573752:1:exon

position:573444:1
position: 573444
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:573752:1
position: 573752
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:574216-574328:1:exon

position:574216:1
position: 574216
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:574328:1
position: 574328
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:576445-576646:1:exon

position:576445:1
position: 576445
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:576646:1
position: 576646
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:577598-577666:1:exon

position:577598:1
position: 577598
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:577666:1
position: 577666
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:577867-578000:1:exon

position:577867:1
position: 577867
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:578000:1
position: 578000
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:580680-581751:1:exon

position:580680:1
position: 580680
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

IL4I1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: IL4I1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: L-amino-acid oxidase
translation: MVVINSNMAATNSKMAATNSKMVINNSKMDFLGLGSQSWEPPGTTLTSNAALSLSPLPSPALLQILLLVGLLSAKRFSSFPDYCLHDQDYEDLLKIVQEGLEPAARPARVAVVGAGVAGLTAAKLLRDAGHEVIILERSSWVGGRIRTYRPEGQDWYVELGPMRLPGKHRLVREFIRQFKLKLNPFIQRDENSWFFLRGVRVRAGEVERNPDVLNYTVKPSERGKNGVQLYREVLNKALKKFQSTDCKKFLAEHDSYSTKEYLIKVGELSRGAVDMIGDVLNEDSGFYLSFLASLWDFDIFSNDSFDEITGGFDQLPRAFHKALPNVVRFNCTVEKIMTKDNKVRVFYRAPDTLAPTVLTADFVLVTSSAKATRHIRFLPPLSPAKAHALRSIYYASASKIILVCSEKFWEKDGIRGGYSVTDRPSRFIYYPSHNFSSGVGVLLASYTWNSDAEFFLPLSDEKCLDVVLQDLADIHQVSKEYLQYTCDQHLVQKWQLDRHSLGAFAHFTPFQFVDYSRVLFAHEGRVHFAGEHAAQPHAWIDTAVKSAVRAASNIHHESAEAPGRGFGRVGQREEL
SIO_010081: IL4I1
subclass of: SO_0000673
so part of: IL4I1
location: join(560384..560470,573444..573752,574216..574328,576445..576646,577598..577666,577867..578000,580680..581496)
location: region:560384-581496:1
so has part: feature:560384-560470:1:exon
so has part: feature:573444-573752:1:exon
so has part: feature:574216-574328:1:exon
so has part: feature:576445-576646:1:exon
so has part: feature:577598-577666:1:exon
so has part: feature:577867-578000:1:exon
so has part: feature:580680-581496:1:exon

XP_041568616.1
type: Protein
SIO_000068: ncbiprotein

position:581496:1
position: 581496
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:560384-560470:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:573444-573752:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:574216-574328:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:576445-576646:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:577598-577666:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:577867-578000:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:580680-581496:1:exon

TRNAT-UGU
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: TRNAT-UGU
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: 564598..564670
location: region:564598-564670:1
so has part: feature:564598-564670:1:exon
subclass of: SO_0000663

115492283
type: Gene
SIO_000068: ncbigene

position:564598:1
position: 564598
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:564670:1
position: 564670
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:564598-564670:1:exon

TRNAT-UGU
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 59729
gene: TRNAT-UGU
product: tRNA-Thr
inference: COORDINATES: profile:tRNAscan-SE:2.0.4
note: transfer RNA threonine (anticodon UGU); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:564631..564633,aa:Thr,seq:tgt)
SIO_010081: TRNAT-UGU
subclass of: SO_0000673
so part of: TRNAT-UGU
location: 564598..564670
location: region:564598-564670:1
so has part: feature:564598-564670:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:564598-564670:1:exon

TRNAP-UGG
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: TRNAP-UGG
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: 564855..564926
location: region:564855-564926:1
so has part: feature:564855-564926:1:exon
subclass of: SO_0000663

115492293
type: Gene
SIO_000068: ncbigene

position:564855:1
position: 564855
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:564926:1
position: 564926
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:564855-564926:1:exon

TRNAP-UGG
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 59729
gene: TRNAP-UGG
product: tRNA-Pro
inference: COORDINATES: profile:tRNAscan-SE:2.0.4
note: transfer RNA proline (anticodon UGG); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:564887..564889,aa:Pro,seq:tgg)
SIO_010081: TRNAP-UGG
subclass of: SO_0000673
so part of: TRNAP-UGG
location: 564855..564926
location: region:564855-564926:1
so has part: feature:564855-564926:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:564855-564926:1:exon

TRNAL-AAG
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: TRNAL-AAG
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: complement(565608..565689)
location: region:565608-565689:-1
so has part: feature:565608-565689:-1:exon
subclass of: SO_0000663

115492282
type: Gene
SIO_000068: ncbigene

position:565608:-1
position: 565608
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:565689:-1
position: 565689
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:565608-565689:-1:exon

TRNAL-AAG
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 59729
gene: TRNAL-AAG
product: tRNA-Leu
inference: COORDINATES: profile:tRNAscan-SE:2.0.4
note: transfer RNA leucine (anticodon AAG); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:complement(565653..565655),aa:Leu,seq:aag)
SIO_010081: TRNAL-AAG
subclass of: SO_0000673
so part of: TRNAL-AAG
location: complement(565608..565689)
location: region:565608-565689:-1
so has part: feature:565608-565689:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:565608-565689:-1:exon

LOC100229107
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: LOC100229107
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 585965..597724
location: region:585965-597724:1
so has part: feature:585965-597724:1:exon
subclass of: SO_0000010

100229107
type: Gene
SIO_000068: ncbigene

position:585965:1
position: 585965
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:597724:1
position: 597724
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:585965-597724:1:exon

LOC100229107
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: LOC100229107
product: zinc finger protein CKR1-like, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 ESTs, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 19 samples with support for all annotated introns
transcript id: XM_041712748.1
SIO_010081: LOC100229107
subclass of: SO_0000673
so part of: LOC100229107
location: join(585965..586054,588762..588907,595158..597724)
location: region:585965-597724:1
so has part: feature:585965-586054:1:exon
so has part: feature:588762-588907:1:exon
so has part: feature:595158-597724:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:585965-586054:1:exon

position:586054:1
position: 586054
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:588762-588907:1:exon

position:588762:1
position: 588762
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:588907:1
position: 588907
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:595158-597724:1:exon

position:595158:1
position: 595158
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC100229107
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: LOC100229107
product: zinc finger protein CKR1-like, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 ESTs, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
transcript id: XM_041712749.1
SIO_010081: LOC100229107
subclass of: SO_0000673
so part of: LOC100229107
location: join(585965..586054,588762..588907,595158..596474,596581..597724)
location: region:585965-597724:1
so has part: feature:585965-586054:1:exon
so has part: feature:588762-588907:1:exon
so has part: feature:595158-596474:1:exon
so has part: feature:596581-597724:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:585965-586054:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:588762-588907:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:595158-596474:1:exon

position:596474:1
position: 596474
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:596581-597724:1:exon

position:596581:1
position: 596581
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC100229107
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: LOC100229107
product: zinc finger protein CKR1-like, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 ESTs, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
transcript id: XM_030261027.3
SIO_010081: LOC100229107
subclass of: SO_0000673
so part of: LOC100229107
location: join(585965..586054,588762..588907,595158..596464,596571..597724)
location: region:585965-597724:1
so has part: feature:585965-586054:1:exon
so has part: feature:588762-588907:1:exon
so has part: feature:595158-596464:1:exon
so has part: feature:596571-597724:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:585965-586054:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:588762-588907:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:595158-596464:1:exon

position:596464:1
position: 596464
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:596571-597724:1:exon

position:596571:1
position: 596571
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC100229107
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: LOC100229107
product: zinc finger protein CKR1-like, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 ESTs, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 20 samples with support for all annotated introns
transcript id: XM_041712750.1
SIO_010081: LOC100229107
subclass of: SO_0000673
so part of: LOC100229107
location: join(585966..586054,588762..588907,595161..597724)
location: region:585966-597724:1
so has part: feature:585966-586054:1:exon
so has part: feature:588762-588907:1:exon
so has part: feature:595161-597724:1:exon

position:585966:1
position: 585966
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:585966-586054:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:588762-588907:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:595161-597724:1:exon

position:595161:1
position: 595161
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC100229107
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: LOC100229107
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: zinc finger protein CKR1-like isoform X2
translation: MEPWAPLYLDVMHESYETLMALAAQGLVSDKSASKGASESGAGLAPRSPHIPEREKLRGSNRRKTRRPDKTVTDFSPKPVVVPKICCAKAPRGAGASRHRPFGCADCGKSFPWASHLERHRRVHTGERPFGCAECGETYSQSSHLRQHRRTHAGDRPHRCGVCGKRFAAAAELAAHASGHAAGKPHKCGDCGKGFAWASHLERHCRVHTGEKPFKCAECGEAFSQGSHLAKHRRSHAGRRPHRCAACGKTFCQSAELARHRRTHLGVTPLRCGHCGKLFRAGPALARHQQRHSREQSHRCADCGKGFVWASHLERHRRVHTGERPFGCGSCGERFTQKVHLLQHRKIHSPERPYKCGDCGKRFGEAPLFLLHRRGHAAHKSHACGDCGKGFAWASHLERHRRVHTGEKPFKCGECGEAFSQGSHLAKHRRSHLPKNGGVAPLDGSRLAGDAPGAHGSEEP
SIO_010081: LOC100229107
subclass of: SO_0000673
so part of: LOC100229107
location: join(588841..588907,595158..596464,596571..596579)
location: region:588841-596579:1
so has part: feature:588841-588907:1:exon
so has part: feature:595158-596464:1:exon
so has part: feature:596571-596579:1:exon

XP_030116887.3
type: Protein
SIO_000068: ncbiprotein

position:588841:1
position: 588841
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:596579:1
position: 596579
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:588841-588907:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:595158-596464:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:596571-596579:1:exon

LOC100229107
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: LOC100229107
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: zinc finger protein CKR1-like isoform X1
translation: MEPWAPLYLDVMHESYETLMALAAQGLVSDKSASKGASESGAGLAPRSPHIPEREKLRGSNRRKTRRPDKTVTDFSPKPVVVPKICCAKAPRGAGASRHRPFGCADCGKSFPWASHLERHRRVHTGERPFGCAECGETYSQSSHLRQHRRTHAGDRPHRCGVCGKRFAAAAELAAHASGHAAGKPHKCGDCGKGFAWASHLERHCRVHTGEKPFKCAECGEAFSQGSHLAKHRRSHAGRRPHRCAACGKTFCQSAELARHRRTHLGVTPLRCGHCGKLFRAGPALARHQQRHSREQSHRCADCGKGFVWASHLERHRRVHTGERPFGCGSCGERFTQKVHLLQHRKIHSPERPYKCGDCGKRFGEAPLFLLHRRGHAAHKSHACGDCGKGFAWASHLERHRRVHTGEKPFKCGECGEAFSQGSHLAKHRRSHLPKNGGVAPLDGSRLAGDAPGAHGSEEP
SIO_010081: LOC100229107
subclass of: SO_0000673
so part of: LOC100229107
location: join(588841..588907,595158..596473)
location: region:588841-596473:1
so has part: feature:588841-588907:1:exon
so has part: feature:595158-596473:1:exon

XP_041568682.1
type: Protein
SIO_000068: ncbiprotein

position:596473:1
position: 596473
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:588841-588907:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:595158-596473:1:exon

LOC100229107
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: LOC100229107
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: zinc finger protein CKR1-like isoform X1
translation: MEPWAPLYLDVMHESYETLMALAAQGLVSDKSASKGASESGAGLAPRSPHIPEREKLRGSNRRKTRRPDKTVTDFSPKPVVVPKICCAKAPRGAGASRHRPFGCADCGKSFPWASHLERHRRVHTGERPFGCAECGETYSQSSHLRQHRRTHAGDRPHRCGVCGKRFAAAAELAAHASGHAAGKPHKCGDCGKGFAWASHLERHCRVHTGEKPFKCAECGEAFSQGSHLAKHRRSHAGRRPHRCAACGKTFCQSAELARHRRTHLGVTPLRCGHCGKLFRAGPALARHQQRHSREQSHRCADCGKGFVWASHLERHRRVHTGERPFGCGSCGERFTQKVHLLQHRKIHSPERPYKCGDCGKRFGEAPLFLLHRRGHAAHKSHACGDCGKGFAWASHLERHRRVHTGEKPFKCGECGEAFSQGSHLAKHRRSHLPKNGGVAPLDGSRLAGDAPGAHGSEEP
SIO_010081: LOC100229107
subclass of: SO_0000673
so part of: LOC100229107
location: join(588841..588907,595158..596473)
location: region:588841-596473:1
so has part: feature:588841-588907:1:exon
so has part: feature:595158-596473:1:exon

XP_041568683.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:588841-588907:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:595158-596473:1:exon

LOC100229107
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: LOC100229107
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: zinc finger protein CKR1-like isoform X3
translation: MEPWAPLYLDVMHESYETLMALAQGLVSDKSASKGASESGAGLAPRSPHIPEREKLRGSNRRKTRRPDKTVTDFSPKPVVVPKICCAKAPRGAGASRHRPFGCADCGKSFPWASHLERHRRVHTGERPFGCAECGETYSQSSHLRQHRRTHAGDRPHRCGVCGKRFAAAAELAAHASGHAAGKPHKCGDCGKGFAWASHLERHCRVHTGEKPFKCAECGEAFSQGSHLAKHRRSHAGRRPHRCAACGKTFCQSAELARHRRTHLGVTPLRCGHCGKLFRAGPALARHQQRHSREQSHRCADCGKGFVWASHLERHRRVHTGERPFGCGSCGERFTQKVHLLQHRKIHSPERPYKCGDCGKRFGEAPLFLLHRRGHAAHKSHACGDCGKGFAWASHLERHRRVHTGEKPFKCGECGEAFSQGSHLAKHRRSHLPKNGGVAPLDGSRLAGDAPGAHGSEEP
SIO_010081: LOC100229107
subclass of: SO_0000673
so part of: LOC100229107
location: join(588841..588907,595161..596473)
location: region:588841-596473:1
so has part: feature:588841-588907:1:exon
so has part: feature:595161-596473:1:exon

XP_041568684.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:588841-588907:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:595161-596473:1:exon

LOC121468733
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: LOC121468733
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 598775..599372
location: region:598775-599372:1
so has part: feature:598775-599372:1:exon
subclass of: SO_0000011

121468733
type: Gene
SIO_000068: ncbigene

position:598775:1
position: 598775
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:599372:1
position: 599372
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:598775-599372:1:exon

LOC121468733
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 59729
nc RNA class: lncRNA
gene: LOC121468733
product: uncharacterized LOC121468733
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 18 samples with support for all annotated introns
transcript id: XR_005978553.1
SIO_010081: LOC121468733
subclass of: SO_0000673
so part of: LOC121468733
location: join(598775..598932,599110..599372)
location: region:598775-599372:1
so has part: feature:598775-598932:1:exon
so has part: feature:599110-599372:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:598775-598932:1:exon

position:598932:1
position: 598932
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:599110-599372:1:exon

position:599110:1
position: 599110
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC100223408
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: LOC100223408
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 601520..626571
location: region:601520-626571:1
so has part: feature:601520-626571:1:exon
subclass of: SO_0000010

100223408
type: Gene
SIO_000068: ncbigene

position:601520:1
position: 601520
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:626571:1
position: 626571
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:601520-626571:1:exon

LOC100223408
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: LOC100223408
product: E3 ubiquitin-protein ligase TRIM7, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 ESTs, 14 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 62 samples with support for all annotated introns
transcript id: XM_041712744.1
SIO_010081: LOC100223408
subclass of: SO_0000673
so part of: LOC100223408
location: join(601520..602184,609761..609847,614688..614903,616809..616831,616945..617060,617887..617924,623444..623838,624459..624527,626208..626571)
location: region:601520-626571:1
so has part: feature:601520-602184:1:exon
so has part: feature:609761-609847:1:exon
so has part: feature:614688-614903:1:exon
so has part: feature:616809-616831:1:exon
so has part: feature:616945-617060:1:exon
so has part: feature:617887-617924:1:exon
so has part: feature:623444-623838:1:exon
so has part: feature:624459-624527:1:exon
so has part: feature:626208-626571:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:601520-602184:1:exon

position:602184:1
position: 602184
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:609761-609847:1:exon

position:609761:1
position: 609761
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:609847:1
position: 609847
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:614688-614903:1:exon

position:614688:1
position: 614688
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:614903:1
position: 614903
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:616809-616831:1:exon

position:616809:1
position: 616809
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:616831:1
position: 616831
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:616945-617060:1:exon

position:616945:1
position: 616945
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:617060:1
position: 617060
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:617887-617924:1:exon

position:617887:1
position: 617887
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:617924:1
position: 617924
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:623444-623838:1:exon

position:623444:1
position: 623444
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:623838:1
position: 623838
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:624459-624527:1:exon

position:624459:1
position: 624459
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:624527:1
position: 624527
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:626208-626571:1:exon

position:626208:1
position: 626208
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC100223408
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: LOC100223408
product: E3 ubiquitin-protein ligase TRIM7, transcript variant X5
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 ESTs, 14 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 50 samples with support for all annotated introns
transcript id: XM_041712745.1
SIO_010081: LOC100223408
subclass of: SO_0000673
so part of: LOC100223408
location: join(601520..602184,609761..609847,614688..614903,616809..616831,616945..617060,617887..617924,623444..623758,625066..625145,625479..625664)
location: region:601520-625664:1
so has part: feature:601520-602184:1:exon
so has part: feature:609761-609847:1:exon
so has part: feature:614688-614903:1:exon
so has part: feature:616809-616831:1:exon
so has part: feature:616945-617060:1:exon
so has part: feature:617887-617924:1:exon
so has part: feature:623444-623758:1:exon
so has part: feature:625066-625145:1:exon
so has part: feature:625479-625664:1:exon

position:625664:1
position: 625664
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:601520-602184:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:609761-609847:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:614688-614903:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:616809-616831:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:616945-617060:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:617887-617924:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:623444-623758:1:exon

position:623758:1
position: 623758
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:625066-625145:1:exon

position:625066:1
position: 625066
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:625145:1
position: 625145
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:625479-625664:1:exon

position:625479:1
position: 625479
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC100223408
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: LOC100223408
product: E3 ubiquitin-protein ligase TRIM7, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 ESTs, 15 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 74 samples with support for all annotated introns
transcript id: XM_041712743.1
SIO_010081: LOC100223408
subclass of: SO_0000673
so part of: LOC100223408
location: join(601520..602184,609761..609847,614688..614903,616809..616831,616945..617060,617887..617924,623444..623907,624211..624316)
location: region:601520-624316:1
so has part: feature:601520-602184:1:exon
so has part: feature:609761-609847:1:exon
so has part: feature:614688-614903:1:exon
so has part: feature:616809-616831:1:exon
so has part: feature:616945-617060:1:exon
so has part: feature:617887-617924:1:exon
so has part: feature:623444-623907:1:exon
so has part: feature:624211-624316:1:exon

position:624316:1
position: 624316
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:601520-602184:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:609761-609847:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:614688-614903:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:616809-616831:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:616945-617060:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:617887-617924:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:623444-623907:1:exon

position:623907:1
position: 623907
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:624211-624316:1:exon

position:624211:1
position: 624211
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC100223408
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: LOC100223408
product: E3 ubiquitin-protein ligase TRIM7, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 ESTs, 16 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 93 samples with support for all annotated introns
transcript id: XM_041712742.1
SIO_010081: LOC100223408
subclass of: SO_0000673
so part of: LOC100223408
location: join(601520..602184,609761..609847,614688..614903,616809..616831,616945..617060,617887..617924,623444..624032)
location: region:601520-624032:1
so has part: feature:601520-602184:1:exon
so has part: feature:609761-609847:1:exon
so has part: feature:614688-614903:1:exon
so has part: feature:616809-616831:1:exon
so has part: feature:616945-617060:1:exon
so has part: feature:617887-617924:1:exon
so has part: feature:623444-624032:1:exon

position:624032:1
position: 624032
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:601520-602184:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:609761-609847:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:614688-614903:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:616809-616831:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:616945-617060:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:617887-617924:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:623444-624032:1:exon

LOC100223408
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: LOC100223408
product: E3 ubiquitin-protein ligase TRIM7, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 ESTs, 19 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 70 samples with support for all annotated introns
transcript id: XM_041712741.1
SIO_010081: LOC100223408
subclass of: SO_0000673
so part of: LOC100223408
location: join(601520..602184,609761..609847,614688..614903,616809..616831,616945..617060,617887..617919,623439..624032)
location: region:601520-624032:1
so has part: feature:601520-602184:1:exon
so has part: feature:609761-609847:1:exon
so has part: feature:614688-614903:1:exon
so has part: feature:616809-616831:1:exon
so has part: feature:616945-617060:1:exon
so has part: feature:617887-617919:1:exon
so has part: feature:623439-624032:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:601520-602184:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:609761-609847:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:614688-614903:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:616809-616831:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:616945-617060:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:617887-617919:1:exon

position:617919:1
position: 617919
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:623439-624032:1:exon

position:623439:1
position: 623439
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC100223408
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: LOC100223408
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: E3 ubiquitin-protein ligase TRIM7 isoform X4
translation: MEAPPAPPAAPPAPCSAARSLQDELTCPVCLEYFNDPVLVAECGHNFCRACVTQCWEDSARRLCCPQCREPVPQRLFRPNRSLGNIVHIVRQLGLPPGNAEPPPAASPPLPAAPVPSGPSRCPRHGEPLRLYCVQDRRAVCVVCHLSREHRAHTVLPAEEAAHAAEEVPQEHLSSLRKGREEAKAERERQSQELLKQTEVERQKIVEEVKDLKEFLEEKEQLLLSRLEELEKNIGRRRDQSVARLDEDIARLDKLLADSGTGNAPGEGVVPAGSSPESWMFLKPEPGFSELEKKLKSFSQKSAVLKEVLLEFKENLRFELENDTGELSLDPDTANPYLVLSEDKRSVRLRGAPQELPAHPKRFDFAFCVLTCEGFSAGRHYWEVEVGDGESWVLGAARESVRRKEKVDFAPEEGIWAVGLNWKGKNWDQYQAFTSPETPLSLCERPRKIGVYLDYEGGWVAFYNADSMAPIFTFTAAFSERIFPFFWLFYVGSSLSLCN
SIO_010081: LOC100223408
subclass of: SO_0000673
so part of: LOC100223408
location: join(601687..602184,609761..609847,614688..614903,616809..616831,616945..617060,617887..617924,623444..623838,624459..624527,626208..626265)
location: region:601687-626265:1
so has part: feature:601687-602184:1:exon
so has part: feature:609761-609847:1:exon
so has part: feature:614688-614903:1:exon
so has part: feature:616809-616831:1:exon
so has part: feature:616945-617060:1:exon
so has part: feature:617887-617924:1:exon
so has part: feature:623444-623838:1:exon
so has part: feature:624459-624527:1:exon
so has part: feature:626208-626265:1:exon

XP_041568678.1
type: Protein
SIO_000068: ncbiprotein

position:601687:1
position: 601687
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:626265:1
position: 626265
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:601687-602184:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:609761-609847:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:614688-614903:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:616809-616831:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:616945-617060:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:617887-617924:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:623444-623838:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:624459-624527:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:626208-626265:1:exon

LOC100223408
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: LOC100223408
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: E3 ubiquitin-protein ligase TRIM7 isoform X5
translation: MEAPPAPPAAPPAPCSAARSLQDELTCPVCLEYFNDPVLVAECGHNFCRACVTQCWEDSARRLCCPQCREPVPQRLFRPNRSLGNIVHIVRQLGLPPGNAEPPPAASPPLPAAPVPSGPSRCPRHGEPLRLYCVQDRRAVCVVCHLSREHRAHTVLPAEEAAHAAEEVPQEHLSSLRKGREEAKAERERQSQELLKQTEVERQKIVEEVKDLKEFLEEKEQLLLSRLEELEKNIGRRRDQSVARLDEDIARLDKLLADSGTGNAPGEGVVPAGSSPESWMFLKPEPGFSELEKKLKSFSQKSAVLKEVLLEFKENLRFELENDTGELSLDPDTANPYLVLSEDKRSVRLRGAPQELPAHPKRFDFAFCVLTCEGFSAGRHYWEVEVGDGESWVLGAARESVRRKEKVDFAPEEGIWAVGLNWKGKNWDQYQAFTSPETPLSLCERPRKIGVYLDYEGGWVAFYNADSMAPIFTFTAAFSERIFPFFWLFYVGSSLSLCN
SIO_010081: LOC100223408
subclass of: SO_0000673
so part of: LOC100223408
location: join(601687..602184,609761..609847,614688..614903,616809..616831,616945..617060,617887..617924,623444..623758,625066..625145,625479..625605)
location: region:601687-625605:1
so has part: feature:601687-602184:1:exon
so has part: feature:609761-609847:1:exon
so has part: feature:614688-614903:1:exon
so has part: feature:616809-616831:1:exon
so has part: feature:616945-617060:1:exon
so has part: feature:617887-617924:1:exon
so has part: feature:623444-623758:1:exon
so has part: feature:625066-625145:1:exon
so has part: feature:625479-625605:1:exon

XP_041568679.1
type: Protein
SIO_000068: ncbiprotein

position:625605:1
position: 625605
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:601687-602184:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:609761-609847:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:614688-614903:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:616809-616831:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:616945-617060:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:617887-617924:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:623444-623758:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:625066-625145:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:625479-625605:1:exon

LOC100223408
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: LOC100223408
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: E3 ubiquitin-protein ligase TRIM7 isoform X3
translation: MEAPPAPPAAPPAPCSAARSLQDELTCPVCLEYFNDPVLVAECGHNFCRACVTQCWEDSARRLCCPQCREPVPQRLFRPNRSLGNIVHIVRQLGLPPGNAEPPPAASPPLPAAPVPSGPSRCPRHGEPLRLYCVQDRRAVCVVCHLSREHRAHTVLPAEEAAHAAEEVPQEHLSSLRKGREEAKAERERQSQELLKQTEVERQKIVEEVKDLKEFLEEKEQLLLSRLEELEKNIGRRRDQSVARLDEDIARLDKLLADSGTGNAPGEGVVPAGSSPESWMFLKPEPGFSELEKKLKSFSQKSAVLKEVLLEFKENLRFELENDTGELSLDPDTANPYLVLSEDKRSVRLRGAPQELPAHPKRFDFAFCVLTCEGFSAGRHYWEVEVGDGESWVLGAARESVRRKEKVDFAPEEGIWAVGLNWKGKNWDQYQAFTSPETPLSLCERPRKIGVYLDYEGGWVAFYNADSMAPIFTFTAAFSERIFPFFWLFYVGSSLSLCN
SIO_010081: LOC100223408
subclass of: SO_0000673
so part of: LOC100223408
location: join(601687..602184,609761..609847,614688..614903,616809..616831,616945..617060,617887..617924,623444..623907,624211..624268)
location: region:601687-624268:1
so has part: feature:601687-602184:1:exon
so has part: feature:609761-609847:1:exon
so has part: feature:614688-614903:1:exon
so has part: feature:616809-616831:1:exon
so has part: feature:616945-617060:1:exon
so has part: feature:617887-617924:1:exon
so has part: feature:623444-623907:1:exon
so has part: feature:624211-624268:1:exon

XP_041568677.1
type: Protein
SIO_000068: ncbiprotein

position:624268:1
position: 624268
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:601687-602184:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:609761-609847:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:614688-614903:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:616809-616831:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:616945-617060:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:617887-617924:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:623444-623907:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:624211-624268:1:exon

LOC100223408
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: LOC100223408
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: E3 ubiquitin-protein ligase TRIM7 isoform X2
translation: MEAPPAPPAAPPAPCSAARSLQDELTCPVCLEYFNDPVLVAECGHNFCRACVTQCWEDSARRLCCPQCREPVPQRLFRPNRSLGNIVHIVRQLGLPPGNAEPPPAASPPLPAAPVPSGPSRCPRHGEPLRLYCVQDRRAVCVVCHLSREHRAHTVLPAEEAAHAAEEVPQEHLSSLRKGREEAKAERERQSQELLKQTEVERQKIVEEVKDLKEFLEEKEQLLLSRLEELEKNIGRRRDQSVARLDEDIARLDKLLADSGTGNAPGEGVVPAGSSPESWMFLKPEPGFSELEKKLKSFSQKSAVLKEVLLEFKENLRFELENDTGELSLDPDTANPYLVLSEDKRSVRLRGAPQELPAHPKRFDFAFCVLTCEGFSAGRHYWEVEVGDGESWVLGAARESVRRKEKVDFAPEEGIWAVGLNWKGKNWDQYQAFTSPETPLSLCERPRKIGVYLDYEGGWVAFYNADSMAPIFTFTAAFSERIFPFFWLFYVGSSLSLCN
SIO_010081: LOC100223408
subclass of: SO_0000673
so part of: LOC100223408
location: join(601687..602184,609761..609847,614688..614903,616809..616831,616945..617060,617887..617924,623444..623965)
location: region:601687-623965:1
so has part: feature:601687-602184:1:exon
so has part: feature:609761-609847:1:exon
so has part: feature:614688-614903:1:exon
so has part: feature:616809-616831:1:exon
so has part: feature:616945-617060:1:exon
so has part: feature:617887-617924:1:exon
so has part: feature:623444-623965:1:exon

XP_041568676.1
type: Protein
SIO_000068: ncbiprotein

position:623965:1
position: 623965
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:601687-602184:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:609761-609847:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:614688-614903:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:616809-616831:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:616945-617060:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:617887-617924:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:623444-623965:1:exon

LOC100223408
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: LOC100223408
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: E3 ubiquitin-protein ligase TRIM7 isoform X1
translation: MEAPPAPPAAPPAPCSAARSLQDELTCPVCLEYFNDPVLVAECGHNFCRACVTQCWEDSARRLCCPQCREPVPQRLFRPNRSLGNIVHIVRQLGLPPGNAEPPPAASPPLPAAPVPSGPSRCPRHGEPLRLYCVQDRRAVCVVCHLSREHRAHTVLPAEEAAHAAEEVPQEHLSSLRKGREEAKAERERQSQELLKQTEVERQKIVEEVKDLKEFLEEKEQLLLSRLEELEKNIGRRRDQSVARLDEDIARLDKLLADSGTGNAPGEGVVPAGSSPESWMFLKPEPGFSELEKKLKSFSQKSAVLKEVLLEFKENLRFELENDTGELSLDPDTANPYLVLSEDKRSVRLRGAPQELPAHPKRFDFAFCVLTCEGFSAGRHYWEVEVGDGESWVLGAARESVRRKEKVDFAPEEGIWAVGLNWKGKNWDQYQAFTSPETPLSLCERPRKIGVYLDYEGGWVAFYNADSMAPIFTFTAAFSERIFPFFWLFYVGSSLSLCN
SIO_010081: LOC100223408
subclass of: SO_0000673
so part of: LOC100223408
location: join(601687..602184,609761..609847,614688..614903,616809..616831,616945..617060,617887..617919,623439..623965)
location: region:601687-623965:1
so has part: feature:601687-602184:1:exon
so has part: feature:609761-609847:1:exon
so has part: feature:614688-614903:1:exon
so has part: feature:616809-616831:1:exon
so has part: feature:616945-617060:1:exon
so has part: feature:617887-617919:1:exon
so has part: feature:623439-623965:1:exon

XP_041568675.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:601687-602184:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:609761-609847:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:614688-614903:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:616809-616831:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:616945-617060:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:617887-617919:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:623439-623965:1:exon

LOC121468735
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: LOC121468735
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 615010..615843
location: region:615010-615843:1
so has part: feature:615010-615843:1:exon
subclass of: SO_0000011

121468735
type: Gene
SIO_000068: ncbigene

position:615010:1
position: 615010
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:615843:1
position: 615843
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:615010-615843:1:exon

LOC121468735
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 59729
nc RNA class: lncRNA
gene: LOC121468735
product: uncharacterized LOC121468735
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns
transcript id: XR_005978555.1
SIO_010081: LOC121468735
subclass of: SO_0000673
so part of: LOC121468735
location: join(615010..615254,615441..615843)
location: region:615010-615843:1
so has part: feature:615010-615254:1:exon
so has part: feature:615441-615843:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:615010-615254:1:exon

position:615254:1
position: 615254
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:615441-615843:1:exon

position:615441:1
position: 615441
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC116807679
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: LOC116807679
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(625010..626303)
location: region:625010-626303:-1
so has part: feature:625010-626303:-1:exon
subclass of: SO_0000011

116807679
type: Gene
SIO_000068: ncbigene

position:625010:-1
position: 625010
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:626303:-1
position: 626303
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:625010-626303:-1:exon

LOC116807679
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 59729
nc RNA class: lncRNA
gene: LOC116807679
product: uncharacterized LOC116807679, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 40 samples with support for all annotated introns
transcript id: XR_005978546.1
SIO_010081: LOC116807679
subclass of: SO_0000673
so part of: LOC116807679
location: complement(join(625010..625073,625786..625852,626184..626303))
location: region:625010-626303:-1
so has part: feature:626184-626303:-1:exon
so has part: feature:625786-625852:-1:exon
so has part: feature:625010-625073:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:626184-626303:-1:exon

position:626184:-1
position: 626184
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:625786-625852:-1:exon

position:625786:-1
position: 625786
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:625852:-1
position: 625852
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:625010-625073:-1:exon

position:625073:-1
position: 625073
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC116807679
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 59729
nc RNA class: lncRNA
gene: LOC116807679
product: uncharacterized LOC116807679, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 58 samples with support for all annotated introns
transcript id: XR_005978545.1
SIO_010081: LOC116807679
subclass of: SO_0000673
so part of: LOC116807679
location: complement(join(625722..625852,626184..626303))
location: region:625722-626303:-1
so has part: feature:626184-626303:-1:exon
so has part: feature:625722-625852:-1:exon

position:625722:-1
position: 625722
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:626184-626303:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:625722-625852:-1:exon

LOC121468730
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: LOC121468730
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(628101..631331)
location: region:628101-631331:-1
so has part: feature:628101-631331:-1:exon
subclass of: SO_0000011

121468730
type: Gene
SIO_000068: ncbigene

position:628101:-1
position: 628101
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:631331:-1
position: 631331
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:628101-631331:-1:exon

LOC121468730
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 59729
nc RNA class: lncRNA
gene: LOC121468730
product: uncharacterized LOC121468730, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 48 samples with support for all annotated introns
transcript id: XR_005978549.1
SIO_010081: LOC121468730
subclass of: SO_0000673
so part of: LOC121468730
location: complement(join(628101..630255,631029..631331))
location: region:628101-631331:-1
so has part: feature:631029-631331:-1:exon
so has part: feature:628101-630255:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:631029-631331:-1:exon

position:631029:-1
position: 631029
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:628101-630255:-1:exon

position:630255:-1
position: 630255
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC121468730
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 59729
nc RNA class: lncRNA
gene: LOC121468730
product: uncharacterized LOC121468730, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
transcript id: XR_005978548.1
SIO_010081: LOC121468730
subclass of: SO_0000673
so part of: LOC121468730
location: complement(join(628101..630255,630400..631331))
location: region:628101-631331:-1
so has part: feature:630400-631331:-1:exon
so has part: feature:628101-630255:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:630400-631331:-1:exon

position:630400:-1
position: 630400
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:628101-630255:-1:exon

LOC115492274
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: LOC115492274
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(631506..650992)
location: region:631506-650992:-1
so has part: feature:631506-650992:-1:exon
subclass of: SO_0000010

115492274
type: Gene
SIO_000068: ncbigene

position:631506:-1
position: 631506
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:650992:-1
position: 650992
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:631506-650992:-1:exon

LOC115492274
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: LOC115492274
product: zinc finger protein 692
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 92% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_041712780.1
SIO_010081: LOC115492274
subclass of: SO_0000673
so part of: LOC115492274
location: complement(join(631506..631879,636065..636164,636470..636584,636702..636780,636978..637019,642826..642954,644646..644786,647819..648224,648514..648545,648648..648832,650812..650992))
location: region:631506-650992:-1
so has part: feature:650812-650992:-1:exon
so has part: feature:648648-648832:-1:exon
so has part: feature:648514-648545:-1:exon
so has part: feature:647819-648224:-1:exon
so has part: feature:644646-644786:-1:exon
so has part: feature:642826-642954:-1:exon
so has part: feature:636978-637019:-1:exon
so has part: feature:636702-636780:-1:exon
so has part: feature:636470-636584:-1:exon
so has part: feature:636065-636164:-1:exon
so has part: feature:631506-631879:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:650812-650992:-1:exon

position:650812:-1
position: 650812
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:648648-648832:-1:exon

position:648648:-1
position: 648648
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:648832:-1
position: 648832
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:648514-648545:-1:exon

position:648514:-1
position: 648514
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:648545:-1
position: 648545
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:647819-648224:-1:exon

position:647819:-1
position: 647819
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:648224:-1
position: 648224
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:644646-644786:-1:exon

position:644646:-1
position: 644646
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:644786:-1
position: 644786
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:642826-642954:-1:exon

position:642826:-1
position: 642826
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:642954:-1
position: 642954
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:636978-637019:-1:exon

position:636978:-1
position: 636978
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:637019:-1
position: 637019
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:636702-636780:-1:exon

position:636702:-1
position: 636702
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:636780:-1
position: 636780
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:636470-636584:-1:exon

position:636470:-1
position: 636470
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:636584:-1
position: 636584
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:636065-636164:-1:exon

position:636065:-1
position: 636065
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:636164:-1
position: 636164
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:631506-631879:-1:exon

position:631879:-1
position: 631879
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC115492274
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: LOC115492274
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: substituted 1 base at 1 genomic stop codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
transl except: (pos:complement(644783..644785),aa:OTHER)
product: LOW QUALITY PROTEIN: zinc finger protein 692
translation: MERGAAEKPLAHGGPAPLPELSRRQKRRELDARRSKCRIRIGGHLERWCRLKEQLGFALHSQLAQFLLDRYSSHGSTWSSAESERLQPAALQRLVLLSHSHGQECGFVPDIQLPTAGSAAPLVWECVAGHRFSWGGDSGDSGDSGDSGDSGAGGDSGDVGCGPTLGATRRRSLRRDAAGANEDGEEGMAKSHQGDNEMGDGGDSGGTGEHIPVTFLXSRSVSGSAVPGDDDGAEPREEEEDEDFDLAYSDDLRDENYHPSMESNSEPQRRQNQPKTRKKPIKEEQPRLEPPLPGSNPLEEKSGRVSCDQDTAQIGPKRIRKAAKREILLCDFEGCGKIFSNRQYLNHHQKYQHVHQKTFTCSEPTCGKSFNFKKHLKEHEKLHSDQRDYICEFCARSFRTSSNLIIHRRIHTGEKPLQCEICGFTCRQKASLNWHMKKHDADSSYRFPCDVCGKKFEKRDNVAAHKSKSHAGNFGDGIRNQPEPPGNAEPPEIFGNVPGRGRTPLEYGAGSGNFGRKKGDLGGKNGNLG
SIO_010081: LOC115492274
subclass of: SO_0000673
so part of: LOC115492274
location: complement(join(631543..631879,636065..636164,636470..636584,636702..636780,636978..637019,642826..642954,644646..644786,647819..648224,648514..648545,648648..648832,650812..650835))
location: region:631543-650835:-1
so has part: feature:650812-650835:-1:exon
so has part: feature:648648-648832:-1:exon
so has part: feature:648514-648545:-1:exon
so has part: feature:647819-648224:-1:exon
so has part: feature:644646-644786:-1:exon
so has part: feature:642826-642954:-1:exon
so has part: feature:636978-637019:-1:exon
so has part: feature:636702-636780:-1:exon
so has part: feature:636470-636584:-1:exon
so has part: feature:636065-636164:-1:exon
so has part: feature:631543-631879:-1:exon

XP_041568714.1
type: Protein
SIO_000068: ncbiprotein

position:631543:-1
position: 631543
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:650835:-1
position: 650835
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:650812-650835:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:648648-648832:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:648514-648545:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:647819-648224:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:644646-644786:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:642826-642954:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:636978-637019:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:636702-636780:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:636470-636584:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:636065-636164:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:631543-631879:-1:exon

LOC121468731
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: LOC121468731
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 639589..642065
location: region:639589-642065:1
so has part: feature:639589-642065:1:exon
subclass of: SO_0000011

121468731
type: Gene
SIO_000068: ncbigene

position:639589:1
position: 639589
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:642065:1
position: 642065
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:639589-642065:1:exon

LOC121468731
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 59729
nc RNA class: lncRNA
gene: LOC121468731
product: uncharacterized LOC121468731, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 36 samples with support for all annotated introns
transcript id: XR_005978550.1
SIO_010081: LOC121468731
subclass of: SO_0000673
so part of: LOC121468731
location: join(639589..640562,641349..642065)
location: region:639589-642065:1
so has part: feature:639589-640562:1:exon
so has part: feature:641349-642065:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:639589-640562:1:exon

position:640562:1
position: 640562
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:641349-642065:1:exon

position:641349:1
position: 641349
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC121468731
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 59729
nc RNA class: lncRNA
gene: LOC121468731
product: uncharacterized LOC121468731, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
transcript id: XR_005978551.1
SIO_010081: LOC121468731
subclass of: SO_0000673
so part of: LOC121468731
location: join(639589..640562,641349..641590,641863..642065)
location: region:639589-642065:1
so has part: feature:639589-640562:1:exon
so has part: feature:641349-641590:1:exon
so has part: feature:641863-642065:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:639589-640562:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:641349-641590:1:exon

position:641590:1
position: 641590
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:641863-642065:1:exon

position:641863:1
position: 641863
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC115492234
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: LOC115492234
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(654412..678039)
location: region:654412-678039:-1
so has part: feature:654412-678039:-1:exon
subclass of: SO_0000010

115492234
type: Gene
SIO_000068: ncbigene

position:654412:-1
position: 654412
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:678039:-1
position: 678039
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:654412-678039:-1:exon

LOC115492234
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: LOC115492234
product: HLA class II histocompatibility antigen, DM beta chain
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 29 samples with support for all annotated introns
transcript id: XM_041712759.1
SIO_010081: LOC115492234
subclass of: SO_0000673
so part of: LOC115492234
location: complement(join(654412..654563,654661..654693,655248..655280,658263..658370,660923..661246,675632..675919,677941..678039))
location: region:654412-678039:-1
so has part: feature:677941-678039:-1:exon
so has part: feature:675632-675919:-1:exon
so has part: feature:660923-661246:-1:exon
so has part: feature:658263-658370:-1:exon
so has part: feature:655248-655280:-1:exon
so has part: feature:654661-654693:-1:exon
so has part: feature:654412-654563:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:677941-678039:-1:exon

position:677941:-1
position: 677941
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:675632-675919:-1:exon

position:675632:-1
position: 675632
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:675919:-1
position: 675919
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:660923-661246:-1:exon

position:660923:-1
position: 660923
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:661246:-1
position: 661246
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:658263-658370:-1:exon

position:658263:-1
position: 658263
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:658370:-1
position: 658370
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:655248-655280:-1:exon

position:655248:-1
position: 655248
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:655280:-1
position: 655280
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:654661-654693:-1:exon

position:654661:-1
position: 654661
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:654693:-1
position: 654693
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:654412-654563:-1:exon

position:654563:-1
position: 654563
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC115492234
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: LOC115492234
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: HLA class II histocompatibility antigen, DM beta chain
translation: MLPLLLAALGAPGAAPFVLQVASSCWLATDGSLVATNGSQDVEVALSRMPLVCGDLRGPRGGPCQQGGLLGTLGDTVAQALAQDSRWGQRLRQRRRLCQELPKMVWPPLRAPPRLRIVPERWGTALALTCYAWAFSPADITLTWLRNGVVPDATTGDIIGDIIGGTVGDTSRQSRALPVGDGTFRAQVTIQVPPGTSGDTFECLALHPGLEEPLRVTWAPGPSRRLSLLVAFSVLSLLLGLLLLLLGLRRFLRPGYSPLPGATHAGYSPLPGDTYTGSI
SIO_010081: LOC115492234
subclass of: SO_0000673
so part of: LOC115492234
location: complement(join(654553..654563,654661..654693,655248..655280,658263..658370,660923..661246,675632..675919,677941..677983))
location: region:654553-677983:-1
so has part: feature:677941-677983:-1:exon
so has part: feature:675632-675919:-1:exon
so has part: feature:660923-661246:-1:exon
so has part: feature:658263-658370:-1:exon
so has part: feature:655248-655280:-1:exon
so has part: feature:654661-654693:-1:exon
so has part: feature:654553-654563:-1:exon

XP_041568693.1
type: Protein
SIO_000068: ncbiprotein

position:654553:-1
position: 654553
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:677983:-1
position: 677983
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:677941-677983:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:675632-675919:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:660923-661246:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:658263-658370:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:655248-655280:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:654661-654693:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:654553-654563:-1:exon

LOC121468732
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: LOC121468732
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(680781..682375)
location: region:680781-682375:-1
so has part: feature:680781-682375:-1:exon
subclass of: SO_0000011

121468732
type: Gene
SIO_000068: ncbigene

position:680781:-1
position: 680781
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:682375:-1
position: 682375
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:680781-682375:-1:exon

LOC121468732
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 59729
nc RNA class: lncRNA
gene: LOC121468732
product: uncharacterized LOC121468732
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 46 samples with support for all annotated introns
transcript id: XR_005978552.1
SIO_010081: LOC121468732
subclass of: SO_0000673
so part of: LOC121468732
location: complement(join(680781..680846,682174..682375))
location: region:680781-682375:-1
so has part: feature:682174-682375:-1:exon
so has part: feature:680781-680846:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:682174-682375:-1:exon

position:682174:-1
position: 682174
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:680781-680846:-1:exon

position:680846:-1
position: 680846
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

BRD2
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: BRD2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: <688950..738157
location: region:688950-738157:1
so has part: feature:688950-738157:1:exon
subclass of: SO_0000010

121468709
type: Gene
SIO_000068: ncbigene

position:688950:1
position: 688950
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:738157:1
position: 738157
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:688950-738157:1:exon

BRD2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: BRD2
product: bromodomain containing 2, transcript variant X1
inference: similar to RNA sequence (same species):INSD:GGLD01001778.1
exception: annotated by transcript or proteomic data
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: added 111 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 ESTs, 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 56 samples with support for all annotated introns
transcript id: XM_041712719.1
SIO_010081: BRD2
subclass of: SO_0000673
so part of: BRD2
location: join(<688950..689250,692923..693060,704322..704463,710369..710454,711406..711624,714490..714861,717401..717529,721764..722030,725409..725599,729199..729512,734865..734987,738024..738157)
location: region:688950-738157:1
so has part: feature:688950-689250:1:exon
so has part: feature:692923-693060:1:exon
so has part: feature:704322-704463:1:exon
so has part: feature:710369-710454:1:exon
so has part: feature:711406-711624:1:exon
so has part: feature:714490-714861:1:exon
so has part: feature:717401-717529:1:exon
so has part: feature:721764-722030:1:exon
so has part: feature:725409-725599:1:exon
so has part: feature:729199-729512:1:exon
so has part: feature:734865-734987:1:exon
so has part: feature:738024-738157:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:688950-689250:1:exon

position:689250:1
position: 689250
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:692923-693060:1:exon

position:692923:1
position: 692923
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:693060:1
position: 693060
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:704322-704463:1:exon

position:704322:1
position: 704322
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:704463:1
position: 704463
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:710369-710454:1:exon

position:710369:1
position: 710369
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:710454:1
position: 710454
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:711406-711624:1:exon

position:711406:1
position: 711406
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:711624:1
position: 711624
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:714490-714861:1:exon

position:714490:1
position: 714490
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:714861:1
position: 714861
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:717401-717529:1:exon

position:717401:1
position: 717401
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:717529:1
position: 717529
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:721764-722030:1:exon

position:721764:1
position: 721764
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:722030:1
position: 722030
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:725409-725599:1:exon

position:725409:1
position: 725409
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:725599:1
position: 725599
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:729199-729512:1:exon

position:729199:1
position: 729199
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:729512:1
position: 729512
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:734865-734987:1:exon

position:734865:1
position: 734865
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:734987:1
position: 734987
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:738024-738157:1:exon

position:738024:1
position: 738024
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

BRD2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: BRD2
product: bromodomain containing 2, transcript variant X2
inference: similar to RNA sequence (same species):INSD:GGLD01001778.1
exception: annotated by transcript or proteomic data
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: added 111 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 ESTs, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 16 samples with support for all annotated introns
transcript id: XM_041712721.1
SIO_010081: BRD2
subclass of: SO_0000673
so part of: BRD2
location: join(<688950..689250,692923..693060,704322..704463,710369..710454,711406..711624,714490..714861,717401..717529,721764..722030,725409..725548,726619..726669,729199..729512,734865..734987,738024..738157)
location: region:688950-738157:1
so has part: feature:688950-689250:1:exon
so has part: feature:692923-693060:1:exon
so has part: feature:704322-704463:1:exon
so has part: feature:710369-710454:1:exon
so has part: feature:711406-711624:1:exon
so has part: feature:714490-714861:1:exon
so has part: feature:717401-717529:1:exon
so has part: feature:721764-722030:1:exon
so has part: feature:725409-725548:1:exon
so has part: feature:726619-726669:1:exon
so has part: feature:729199-729512:1:exon
so has part: feature:734865-734987:1:exon
so has part: feature:738024-738157:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:688950-689250:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:692923-693060:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:704322-704463:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:710369-710454:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:711406-711624:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:714490-714861:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:717401-717529:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:721764-722030:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:725409-725548:1:exon

position:725548:1
position: 725548
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:726619-726669:1:exon

position:726619:1
position: 726619
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:726669:1
position: 726669
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:729199-729512:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:734865-734987:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:738024-738157:1:exon

BRD2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: BRD2
product: bromodomain containing 2, transcript variant X3
inference: similar to RNA sequence (same species):INSD:GGLD01001778.1
exception: annotated by transcript or proteomic data
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: added 111 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XM_041712722.1
SIO_010081: BRD2
subclass of: SO_0000673
so part of: BRD2
location: join(<688950..689250,692923..693060,704322..704463,710369..710454,711406..711624,714490..714825,715362..715397,717401..717529,721764..722030,725409..725599,729199..729512,734865..734987,738024..738157)
location: region:688950-738157:1
so has part: feature:688950-689250:1:exon
so has part: feature:692923-693060:1:exon
so has part: feature:704322-704463:1:exon
so has part: feature:710369-710454:1:exon
so has part: feature:711406-711624:1:exon
so has part: feature:714490-714825:1:exon
so has part: feature:715362-715397:1:exon
so has part: feature:717401-717529:1:exon
so has part: feature:721764-722030:1:exon
so has part: feature:725409-725599:1:exon
so has part: feature:729199-729512:1:exon
so has part: feature:734865-734987:1:exon
so has part: feature:738024-738157:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:688950-689250:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:692923-693060:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:704322-704463:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:710369-710454:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:711406-711624:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:714490-714825:1:exon

position:714825:1
position: 714825
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:715362-715397:1:exon

position:715362:1
position: 715362
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:715397:1
position: 715397
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:717401-717529:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:721764-722030:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:725409-725599:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:729199-729512:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:734865-734987:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:738024-738157:1:exon

BRD2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: BRD2
product: bromodomain containing 2, transcript variant X5
inference: similar to RNA sequence (same species):INSD:GGLD01001778.1
exception: annotated by transcript or proteomic data
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: added 111 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 ESTs, 3 Proteins, and 96% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_041712724.1
SIO_010081: BRD2
subclass of: SO_0000673
so part of: BRD2
location: join(<688950..689250,692923..693060,704322..704463,711320..711624,714490..714861,717401..717529,721764..722030,725409..725599,726054..726074,729199..729512,734865..734987,738024..738157)
location: region:688950-738157:1
so has part: feature:688950-689250:1:exon
so has part: feature:692923-693060:1:exon
so has part: feature:704322-704463:1:exon
so has part: feature:711320-711624:1:exon
so has part: feature:714490-714861:1:exon
so has part: feature:717401-717529:1:exon
so has part: feature:721764-722030:1:exon
so has part: feature:725409-725599:1:exon
so has part: feature:726054-726074:1:exon
so has part: feature:729199-729512:1:exon
so has part: feature:734865-734987:1:exon
so has part: feature:738024-738157:1:exon