Taeniopygia guttata isolate Blue55 chromosome 29, bTaeGut1.4.pri, whole genome shotgun sequence.
type: Entry
definition: Taeniopygia guttata isolate Blue55 chromosome 29, bTaeGut1.4.pri, whole genome shotgun sequence.
sequence version: NC_044242.2
sequence date: 2021-05-26
sequence: sequence
division: CON
label: NC_044242.2
type: RefSeq
SIO_000068: refseq
dblink: PRJNA558048
dblink: SAMN02981239
keyword: WGS
keyword: RefSeq
source: Taeniopygia guttata (zebra finch)
organism: Taeniopygia guttata
taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Passeroidea; Estrildidae; Estrildinae; Taeniopygia.
reference: 1
references: 33911273
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCM012109.2.\nOn May 24, 2021 this sequence version replaced NC_044242.1.\nAssembly name: bTaeGut1.4.pri\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Vertebrate Genomes Project on\n2021/05/04. The original whole-genome shotgun project has the\naccession RRCB00000000.2.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Vertebrate Genomes Project\nAssembly Date :: 09-APR-2021\nAssembly Method :: FALCON v. 5.1.1; FALCON unzip v.\n Nov2017(uc4); Purge_dups v. 1.0.1;\n Scaff10X v. 4.1.0; Bionano Solve\n BspQI/BssSI v. 3.4; Salsa2 v. 2.2.; Arrow\n polishing v. variantCaller 2.3.3; Merfin\n filtering v. 0.1; longranger align v.\n 2.2.2; freebayes polishing v. 1.3.1;\n gEVAL manual curation v. 2021-04-09; VGP\n pipeline v. 1.7\nAssembly Name :: bTaeGut1.4.pri\nDiploid :: Principal Pseudohaplotype\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 88.2x\nSequencing Technology :: PacBio RSII; 10X Genomics linked reads;\n Bionano Genomics two enzymes; Arima\n Genomics Hi-C\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Status :: Full annotation\nAnnotation Name :: Taeniopygia guttata Annotation\n Release 106\nAnnotation Version :: 106\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 8.6\nAnnotation Method :: Best-placed RefSeq; Gnomon\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\n##Genome-Annotation-Data-END##

sequence
subclass of: SO_0000340
sequence length: 2636872
topology: linear
so has quality: SO_0000987
location: 1..2636872
location: region:1-2636872:1
RO_0002162: 59729

NC_044242
type: RefSeq
SIO_000068: refseq

PRJNA558048
type: BioProject
SIO_000068: bioproject

SAMN02981239
type: BioSample
SIO_000068: biosample

1
title: Towards complete and error-free genome assemblies of all vertebrate species
author: Rhie, A.
author: McCarthy, S.A.
author: Fedrigo, O.
author: Damas, J.
author: Formenti, G.
author: Koren, S.
author: Uliano-Silva, M.
author: Chow, W.
author: Fungtammasan, A.
author: Kim, J.
author: Lee, C.
author: Ko, B.J.
author: Chaisson, M.
author: Gedman, G.L.
author: Cantin, L.J.
author: Thibaud-Nissen, F.
author: Haggerty, L.
author: Bista, I.
author: Smith, M.
author: Haase, B.
author: Mountcastle, J.
author: Winkler, S.
author: Paez, S.
author: Howard, J.
author: Vernes, S.C.
author: Lama, T.M.
author: Grutzner, F.
author: Warren, W.C.
author: Balakrishnan, C.N.
author: Burt, D.
author: George, J.M.
author: Biegler, M.T.
author: Iorns, D.
author: Digby, A.
author: Eason, D.
author: Robertson, B.
author: Edwards, T.
author: Wilkinson, M.
author: Turner, G.
author: Meyer, A.
author: Kautt, A.F.
author: Franchini, P.
author: Detrich, H.W. 3rd
author: Svardal, H.
author: Wagner, M.
author: Naylor, G.J.P.
author: Pippel, M.
author: Malinsky, M.
author: Mooney, M.
author: Simbirsky, M.
author: Hannigan, B.T.
author: Pesout, T.
author: Houck, M.
author: Misuraca, A.
author: Kingan, S.B.
author: Hall, R.
author: Kronenberg, Z.
author: Sovic, I.
author: Dunn, C.
author: Ning, Z.
author: Hastie, A.
author: Lee, J.
author: Selvaraj, S.
author: Green, R.E.
author: Putnam, N.H.
author: Gut, I.
author: Ghurye, J.
author: Garrison, E.
author: Sims, Y.
author: Collins, J.
author: Pelan, S.
author: Torrance, J.
author: Tracey, A.
author: Wood, J.
author: Dagnew, R.E.
author: Guan, D.
author: London, S.E.
author: Clayton, D.F.

33911273
type: PubMed
SIO_000068: pubmed

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2636872:1
position: 2636872
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-2636872:1:source
so part of: sequence
organism: Taeniopygia guttata
mol type: genomic DNA
isolate: Blue55
chromosome: 29
sex: female
tissue type: Muscle, blood, brain
dev stage: adult
country: USA
lat lon: 36.0014 N 78.9382 W
collected by: Matt Biegler, Duke University and Rockefeller University

59729
type: Taxonomy
SIO_000068: taxonomy

RACGAP1
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: RACGAP1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 5716..14240
location: region:5716-14240:1
so has part: feature:5716-14240:1:exon
subclass of: SO_0000010

115491488
type: Gene
SIO_000068: ncbigene

position:5716:1
position: 5716
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14240:1
position: 14240
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5716-14240:1:exon

RACGAP1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: RACGAP1
product: Rac GTPase activating protein 1, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 ESTs, 4 long SRA reads, 15 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns
transcript id: XM_032744807.2
SIO_010081: RACGAP1
subclass of: SO_0000673
so part of: RACGAP1
location: join(5716..5808,7239..7327,7787..7989,8326..8462,8663..8732,8946..8999,9705..9782,9881..9998,10156..10286,10714..10878,11248..11343,11537..11735,11993..12098,12355..12487,12573..12708,12942..13050,13340..14240)
location: region:5716-14240:1
so has part: feature:5716-5808:1:exon
so has part: feature:7239-7327:1:exon
so has part: feature:7787-7989:1:exon
so has part: feature:8326-8462:1:exon
so has part: feature:8663-8732:1:exon
so has part: feature:8946-8999:1:exon
so has part: feature:9705-9782:1:exon
so has part: feature:9881-9998:1:exon
so has part: feature:10156-10286:1:exon
so has part: feature:10714-10878:1:exon
so has part: feature:11248-11343:1:exon
so has part: feature:11537-11735:1:exon
so has part: feature:11993-12098:1:exon
so has part: feature:12355-12487:1:exon
so has part: feature:12573-12708:1:exon
so has part: feature:12942-13050:1:exon
so has part: feature:13340-14240:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5716-5808:1:exon

position:5808:1
position: 5808
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:7239-7327:1:exon

position:7239:1
position: 7239
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7327:1
position: 7327
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:7787-7989:1:exon

position:7787:1
position: 7787
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7989:1
position: 7989
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:8326-8462:1:exon

position:8326:1
position: 8326
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8462:1
position: 8462
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:8663-8732:1:exon

position:8663:1
position: 8663
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8732:1
position: 8732
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:8946-8999:1:exon

position:8946:1
position: 8946
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8999:1
position: 8999
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:9705-9782:1:exon

position:9705:1
position: 9705
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9782:1
position: 9782
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:9881-9998:1:exon

position:9881:1
position: 9881
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9998:1
position: 9998
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:10156-10286:1:exon

position:10156:1
position: 10156
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10286:1
position: 10286
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:10714-10878:1:exon

position:10714:1
position: 10714
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10878:1
position: 10878
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:11248-11343:1:exon

position:11248:1
position: 11248
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11343:1
position: 11343
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:11537-11735:1:exon

position:11537:1
position: 11537
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11735:1
position: 11735
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:11993-12098:1:exon

position:11993:1
position: 11993
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12098:1
position: 12098
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:12355-12487:1:exon

position:12355:1
position: 12355
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12487:1
position: 12487
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:12573-12708:1:exon

position:12573:1
position: 12573
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12708:1
position: 12708
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:12942-13050:1:exon

position:12942:1
position: 12942
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13050:1
position: 13050
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:13340-14240:1:exon

position:13340:1
position: 13340
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

RACGAP1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: RACGAP1
product: Rac GTPase activating protein 1, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 ESTs, 15 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XM_041711592.1
SIO_010081: RACGAP1
subclass of: SO_0000673
so part of: RACGAP1
location: join(6002..6020,7239..7327,7787..7989,8326..8462,8663..8732,8946..8999,9705..9782,9881..9998,10156..10286,10714..10878,11248..11343,11537..11735,11993..12098,12355..12487,12573..12708,12942..13050,13340..14240)
location: region:6002-14240:1
so has part: feature:6002-6020:1:exon
so has part: feature:7239-7327:1:exon
so has part: feature:7787-7989:1:exon
so has part: feature:8326-8462:1:exon
so has part: feature:8663-8732:1:exon
so has part: feature:8946-8999:1:exon
so has part: feature:9705-9782:1:exon
so has part: feature:9881-9998:1:exon
so has part: feature:10156-10286:1:exon
so has part: feature:10714-10878:1:exon
so has part: feature:11248-11343:1:exon
so has part: feature:11537-11735:1:exon
so has part: feature:11993-12098:1:exon
so has part: feature:12355-12487:1:exon
so has part: feature:12573-12708:1:exon
so has part: feature:12942-13050:1:exon
so has part: feature:13340-14240:1:exon

position:6002:1
position: 6002
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6002-6020:1:exon

position:6020:1
position: 6020
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:7239-7327:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:7787-7989:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:8326-8462:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:8663-8732:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:8946-8999:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:9705-9782:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:9881-9998:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:10156-10286:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:10714-10878:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:11248-11343:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:11537-11735:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:11993-12098:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:12355-12487:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:12573-12708:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:12942-13050:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:13340-14240:1:exon

RACGAP1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: RACGAP1
product: Rac GTPase activating protein 1, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 ESTs, 15 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XM_041711593.1
SIO_010081: RACGAP1
subclass of: SO_0000673
so part of: RACGAP1
location: join(6075..6087,7239..7327,7787..7989,8326..8462,8663..8732,8946..8999,9705..9782,9881..9998,10156..10286,10714..10878,11248..11343,11537..11735,11993..12098,12355..12487,12573..12708,12942..13050,13340..14240)
location: region:6075-14240:1
so has part: feature:6075-6087:1:exon
so has part: feature:7239-7327:1:exon
so has part: feature:7787-7989:1:exon
so has part: feature:8326-8462:1:exon
so has part: feature:8663-8732:1:exon
so has part: feature:8946-8999:1:exon
so has part: feature:9705-9782:1:exon
so has part: feature:9881-9998:1:exon
so has part: feature:10156-10286:1:exon
so has part: feature:10714-10878:1:exon
so has part: feature:11248-11343:1:exon
so has part: feature:11537-11735:1:exon
so has part: feature:11993-12098:1:exon
so has part: feature:12355-12487:1:exon
so has part: feature:12573-12708:1:exon
so has part: feature:12942-13050:1:exon
so has part: feature:13340-14240:1:exon

position:6075:1
position: 6075
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6075-6087:1:exon

position:6087:1
position: 6087
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:7239-7327:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:7787-7989:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:8326-8462:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:8663-8732:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:8946-8999:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:9705-9782:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:9881-9998:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:10156-10286:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:10714-10878:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:11248-11343:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:11537-11735:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:11993-12098:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:12355-12487:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:12573-12708:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:12942-13050:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:13340-14240:1:exon

RACGAP1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: RACGAP1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: rac GTPase-activating protein 1
translation: MEIAMVNLRGLYEHLTRQAELLSEGNECQFIQLAKNFEENRRKWQKMEEELSRCKDRLMKTEAERSALDVKLKHARNQVDVEIKRRQKAEMDCEKLERQIQLIRELLMCDASGSIQLSEEQKSVLAFLNRPQASVGSAGNKRLSTIDESGSILSDISFDKSDDSLDWDSSVVKAVRLKRREKRRSSRQFAEGPPAPQKKSRSISNTADQANESIVAKTTVMVPNDGGPIEAISTIQTMPYPRRSRRKSGPLQPWNSESSIGSKQLESKLDTDGSSTPQHNGGMRLHDFVSKTVIKPESCVPCGKRVKFGKISLKCRDCRVVAHPECRERCPLPCIPTLTGTPVRIGEGTLMDFVPSTPPMIPSIIVHCVNEIEQRGLHETGIYRISGCDKTVRELKEKFLRAKNIPLLSKVDDIHAICGLLKDFLRSLKEPLLTFQLNKTFMEAAEIPDEDNSIAAMYQAVGELPQANRDTLAFLMVHLQRVAQSPDTKMDISNLAKVFGPTIVAHAVPDPDPMTLLQDTKRQPKVVERLLLLPMDYWTQLMMVEQENIDPAHVIENTNAYSTPRTPEVQVSILGLSHHPEHQLSKTPSSSSLSQRVRSTFSKTTPKFGSKSKSTTQLGHQGNFFASPMLK
SIO_010081: RACGAP1
subclass of: SO_0000673
so part of: RACGAP1
location: join(7243..7327,7787..7989,8326..8462,8663..8732,8946..8999,9705..9782,9881..9998,10156..10286,10714..10878,11248..11343,11537..11735,11993..12098,12355..12487,12573..12708,12942..13050,13340..13415)
location: region:7243-13415:1
so has part: feature:7243-7327:1:exon
so has part: feature:7787-7989:1:exon
so has part: feature:8326-8462:1:exon
so has part: feature:8663-8732:1:exon
so has part: feature:8946-8999:1:exon
so has part: feature:9705-9782:1:exon
so has part: feature:9881-9998:1:exon
so has part: feature:10156-10286:1:exon
so has part: feature:10714-10878:1:exon
so has part: feature:11248-11343:1:exon
so has part: feature:11537-11735:1:exon
so has part: feature:11993-12098:1:exon
so has part: feature:12355-12487:1:exon
so has part: feature:12573-12708:1:exon
so has part: feature:12942-13050:1:exon
so has part: feature:13340-13415:1:exon

XP_032600698.2
type: Protein
SIO_000068: ncbiprotein

position:7243:1
position: 7243
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13415:1
position: 13415
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7243-7327:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:7787-7989:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:8326-8462:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:8663-8732:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:8946-8999:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:9705-9782:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:9881-9998:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:10156-10286:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:10714-10878:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:11248-11343:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:11537-11735:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:11993-12098:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:12355-12487:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:12573-12708:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:12942-13050:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:13340-13415:1:exon

RACGAP1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: RACGAP1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: rac GTPase-activating protein 1
translation: MEIAMVNLRGLYEHLTRQAELLSEGNECQFIQLAKNFEENRRKWQKMEEELSRCKDRLMKTEAERSALDVKLKHARNQVDVEIKRRQKAEMDCEKLERQIQLIRELLMCDASGSIQLSEEQKSVLAFLNRPQASVGSAGNKRLSTIDESGSILSDISFDKSDDSLDWDSSVVKAVRLKRREKRRSSRQFAEGPPAPQKKSRSISNTADQANESIVAKTTVMVPNDGGPIEAISTIQTMPYPRRSRRKSGPLQPWNSESSIGSKQLESKLDTDGSSTPQHNGGMRLHDFVSKTVIKPESCVPCGKRVKFGKISLKCRDCRVVAHPECRERCPLPCIPTLTGTPVRIGEGTLMDFVPSTPPMIPSIIVHCVNEIEQRGLHETGIYRISGCDKTVRELKEKFLRAKNIPLLSKVDDIHAICGLLKDFLRSLKEPLLTFQLNKTFMEAAEIPDEDNSIAAMYQAVGELPQANRDTLAFLMVHLQRVAQSPDTKMDISNLAKVFGPTIVAHAVPDPDPMTLLQDTKRQPKVVERLLLLPMDYWTQLMMVEQENIDPAHVIENTNAYSTPRTPEVQVSILGLSHHPEHQLSKTPSSSSLSQRVRSTFSKTTPKFGSKSKSTTQLGHQGNFFASPMLK
SIO_010081: RACGAP1
subclass of: SO_0000673
so part of: RACGAP1
location: join(7243..7327,7787..7989,8326..8462,8663..8732,8946..8999,9705..9782,9881..9998,10156..10286,10714..10878,11248..11343,11537..11735,11993..12098,12355..12487,12573..12708,12942..13050,13340..13415)
location: region:7243-13415:1
so has part: feature:7243-7327:1:exon
so has part: feature:7787-7989:1:exon
so has part: feature:8326-8462:1:exon
so has part: feature:8663-8732:1:exon
so has part: feature:8946-8999:1:exon
so has part: feature:9705-9782:1:exon
so has part: feature:9881-9998:1:exon
so has part: feature:10156-10286:1:exon
so has part: feature:10714-10878:1:exon
so has part: feature:11248-11343:1:exon
so has part: feature:11537-11735:1:exon
so has part: feature:11993-12098:1:exon
so has part: feature:12355-12487:1:exon
so has part: feature:12573-12708:1:exon
so has part: feature:12942-13050:1:exon
so has part: feature:13340-13415:1:exon

XP_041567526.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7243-7327:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:7787-7989:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:8326-8462:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:8663-8732:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:8946-8999:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:9705-9782:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:9881-9998:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:10156-10286:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:10714-10878:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:11248-11343:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:11537-11735:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:11993-12098:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:12355-12487:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:12573-12708:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:12942-13050:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:13340-13415:1:exon

RACGAP1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: RACGAP1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: rac GTPase-activating protein 1
translation: MEIAMVNLRGLYEHLTRQAELLSEGNECQFIQLAKNFEENRRKWQKMEEELSRCKDRLMKTEAERSALDVKLKHARNQVDVEIKRRQKAEMDCEKLERQIQLIRELLMCDASGSIQLSEEQKSVLAFLNRPQASVGSAGNKRLSTIDESGSILSDISFDKSDDSLDWDSSVVKAVRLKRREKRRSSRQFAEGPPAPQKKSRSISNTADQANESIVAKTTVMVPNDGGPIEAISTIQTMPYPRRSRRKSGPLQPWNSESSIGSKQLESKLDTDGSSTPQHNGGMRLHDFVSKTVIKPESCVPCGKRVKFGKISLKCRDCRVVAHPECRERCPLPCIPTLTGTPVRIGEGTLMDFVPSTPPMIPSIIVHCVNEIEQRGLHETGIYRISGCDKTVRELKEKFLRAKNIPLLSKVDDIHAICGLLKDFLRSLKEPLLTFQLNKTFMEAAEIPDEDNSIAAMYQAVGELPQANRDTLAFLMVHLQRVAQSPDTKMDISNLAKVFGPTIVAHAVPDPDPMTLLQDTKRQPKVVERLLLLPMDYWTQLMMVEQENIDPAHVIENTNAYSTPRTPEVQVSILGLSHHPEHQLSKTPSSSSLSQRVRSTFSKTTPKFGSKSKSTTQLGHQGNFFASPMLK
SIO_010081: RACGAP1
subclass of: SO_0000673
so part of: RACGAP1
location: join(7243..7327,7787..7989,8326..8462,8663..8732,8946..8999,9705..9782,9881..9998,10156..10286,10714..10878,11248..11343,11537..11735,11993..12098,12355..12487,12573..12708,12942..13050,13340..13415)
location: region:7243-13415:1
so has part: feature:7243-7327:1:exon
so has part: feature:7787-7989:1:exon
so has part: feature:8326-8462:1:exon
so has part: feature:8663-8732:1:exon
so has part: feature:8946-8999:1:exon
so has part: feature:9705-9782:1:exon
so has part: feature:9881-9998:1:exon
so has part: feature:10156-10286:1:exon
so has part: feature:10714-10878:1:exon
so has part: feature:11248-11343:1:exon
so has part: feature:11537-11735:1:exon
so has part: feature:11993-12098:1:exon
so has part: feature:12355-12487:1:exon
so has part: feature:12573-12708:1:exon
so has part: feature:12942-13050:1:exon
so has part: feature:13340-13415:1:exon

XP_041567527.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7243-7327:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:7787-7989:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:8326-8462:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:8663-8732:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:8946-8999:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:9705-9782:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:9881-9998:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:10156-10286:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:10714-10878:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:11248-11343:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:11537-11735:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:11993-12098:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:12355-12487:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:12573-12708:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:12942-13050:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:13340-13415:1:exon

LOC101233303
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: LOC101233303
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(15016..17978)
location: region:15016-17978:-1
so has part: feature:15016-17978:-1:exon
subclass of: SO_0000010

101233303
type: Gene
SIO_000068: ncbigene

position:15016:-1
position: 15016
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17978:-1
position: 17978
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15016-17978:-1:exon

LOC101233303
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: LOC101233303
product: interferon-induced protein with tetratricopeptide repeats 1-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 40 samples with support for all annotated introns
transcript id: XM_004174972.5
SIO_010081: LOC101233303
subclass of: SO_0000673
so part of: LOC101233303
location: complement(join(15016..17013,17839..17978))
location: region:15016-17978:-1
so has part: feature:17839-17978:-1:exon
so has part: feature:15016-17013:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:17839-17978:-1:exon

position:17839:-1
position: 17839
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:15016-17013:-1:exon

position:17013:-1
position: 17013
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC101233303
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: LOC101233303
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: interferon-induced protein with tetratricopeptide repeats 1-like
translation: MLPAAKLSKEQLKEKLDALQCHFTWMLGVESHSPQHLLQKLDVEIKHTAHQNQLALLGLQAYLHQLNNQSEEALQSLRAAEEHKEDEQLASTAGSLIICGNYAWIHYLQGSYQEAETCLERVQQLCPTPWDVRLIPHIQAQKGWSLLAIRARNGERARECFNMALMLEPQNRSFRTGLAMAFYSSWNSSWQPDTEREVRIQLERIVNEQPDNYKAKIYLARLLEQVDGEKSIGLAKECAEKSSDPEVLKLSALFWMPRSTERALEIIQRALQQEPGYHLLYQALANCYKQQWVKAKEEDKDKIRCKAIKDLQKIVKTHPDLDLTLAKLQLAEFIGAENPAKEKEIYMELERKINTLSLRCRQALSLSWGKYFLYRDKSPEKAKAKFMECYSIPLQTDHRQDCGRRLVKMAGIYKSKGNTQAASAIHRFFQEADRHCPRNQLHSV
SIO_010081: LOC101233303
subclass of: SO_0000673
so part of: LOC101233303
location: complement(join(15702..17013,17839..17861))
location: region:15702-17861:-1
so has part: feature:17839-17861:-1:exon
so has part: feature:15702-17013:-1:exon

XP_004175020.3
type: Protein
SIO_000068: ncbiprotein

position:15702:-1
position: 15702
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17861:-1
position: 17861
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17839-17861:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:15702-17013:-1:exon

LOC115491312
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: LOC115491312
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(26109..27438)
location: region:26109-27438:-1
so has part: feature:26109-27438:-1:exon
subclass of: SO_0000011

115491312
type: Gene
SIO_000068: ncbigene

position:26109:-1
position: 26109
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:27438:-1
position: 27438
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:26109-27438:-1:exon

LOC115491312
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 59729
nc RNA class: lncRNA
gene: LOC115491312
product: uncharacterized LOC115491312
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XR_003957271.3
SIO_010081: LOC115491312
subclass of: SO_0000673
so part of: LOC115491312
location: complement(join(26109..26434,26968..27026,27348..27438))
location: region:26109-27438:-1
so has part: feature:27348-27438:-1:exon
so has part: feature:26968-27026:-1:exon
so has part: feature:26109-26434:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:27348-27438:-1:exon

position:27348:-1
position: 27348
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:26968-27026:-1:exon

position:26968:-1
position: 26968
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:27026:-1
position: 27026
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:26109-26434:-1:exon

position:26434:-1
position: 26434
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

HDAC7
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: HDAC7
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 58150..98306
location: region:58150-98306:1
so has part: feature:58150-98306:1:exon
subclass of: SO_0000010

100219847
type: Gene
SIO_000068: ncbigene

position:58150:1
position: 58150
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:98306:1
position: 98306
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:58150-98306:1:exon

HDAC7
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: HDAC7
product: histone deacetylase 7
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 ESTs, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 46 samples with support for all annotated introns
transcript id: XM_041711498.1
SIO_010081: HDAC7
subclass of: SO_0000673
so part of: HDAC7
location: join(58150..58529,78840..79030,80187..80277,81143..81254,81348..81463,81793..81915,82296..82405,82826..82942,83588..83786,84013..84212,85004..85207,85932..86142,86463..86596,87261..87381,87509..87558,88552..88659,89137..89192,89340..89427,89639..89758,90335..90432,90539..90657,90929..91062,91311..91395,91676..91814,92323..98306)
location: region:58150-98306:1
so has part: feature:58150-58529:1:exon
so has part: feature:78840-79030:1:exon
so has part: feature:80187-80277:1:exon
so has part: feature:81143-81254:1:exon
so has part: feature:81348-81463:1:exon
so has part: feature:81793-81915:1:exon
so has part: feature:82296-82405:1:exon
so has part: feature:82826-82942:1:exon
so has part: feature:83588-83786:1:exon
so has part: feature:84013-84212:1:exon
so has part: feature:85004-85207:1:exon
so has part: feature:85932-86142:1:exon
so has part: feature:86463-86596:1:exon
so has part: feature:87261-87381:1:exon
so has part: feature:87509-87558:1:exon
so has part: feature:88552-88659:1:exon
so has part: feature:89137-89192:1:exon
so has part: feature:89340-89427:1:exon
so has part: feature:89639-89758:1:exon
so has part: feature:90335-90432:1:exon
so has part: feature:90539-90657:1:exon
so has part: feature:90929-91062:1:exon
so has part: feature:91311-91395:1:exon
so has part: feature:91676-91814:1:exon
so has part: feature:92323-98306:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:58150-58529:1:exon

position:58529:1
position: 58529
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:78840-79030:1:exon

position:78840:1
position: 78840
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:79030:1
position: 79030
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:80187-80277:1:exon

position:80187:1
position: 80187
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:80277:1
position: 80277
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:81143-81254:1:exon

position:81143:1
position: 81143
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:81254:1
position: 81254
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:81348-81463:1:exon

position:81348:1
position: 81348
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:81463:1
position: 81463
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:81793-81915:1:exon

position:81793:1
position: 81793
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:81915:1
position: 81915
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:82296-82405:1:exon

position:82296:1
position: 82296
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:82405:1
position: 82405
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:82826-82942:1:exon

position:82826:1
position: 82826
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:82942:1
position: 82942
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:83588-83786:1:exon

position:83588:1
position: 83588
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:83786:1
position: 83786
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:84013-84212:1:exon

position:84013:1
position: 84013
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:84212:1
position: 84212
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:85004-85207:1:exon

position:85004:1
position: 85004
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:85207:1
position: 85207
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:85932-86142:1:exon

position:85932:1
position: 85932
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:86142:1
position: 86142
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:86463-86596:1:exon

position:86463:1
position: 86463
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:86596:1
position: 86596
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:87261-87381:1:exon

position:87261:1
position: 87261
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:87381:1
position: 87381
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:87509-87558:1:exon

position:87509:1
position: 87509
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:87558:1
position: 87558
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:88552-88659:1:exon

position:88552:1
position: 88552
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:88659:1
position: 88659
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:89137-89192:1:exon

position:89137:1
position: 89137
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:89192:1
position: 89192
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:89340-89427:1:exon

position:89340:1
position: 89340
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:89427:1
position: 89427
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:89639-89758:1:exon

position:89639:1
position: 89639
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:89758:1
position: 89758
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:90335-90432:1:exon

position:90335:1
position: 90335
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:90432:1
position: 90432
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:90539-90657:1:exon

position:90539:1
position: 90539
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:90657:1
position: 90657
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 22
SIO_000628: feature:90929-91062:1:exon

position:90929:1
position: 90929
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:91062:1
position: 91062
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 23
SIO_000628: feature:91311-91395:1:exon

position:91311:1
position: 91311
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:91395:1
position: 91395
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 24
SIO_000628: feature:91676-91814:1:exon

position:91676:1
position: 91676
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:91814:1
position: 91814
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 25
SIO_000628: feature:92323-98306:1:exon

position:92323:1
position: 92323
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

HDAC7
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: HDAC7
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: histone deacetylase 7
translation: MWDAEPRLPGSETRWMFSGLEISTTLVMFSPSSAVTPCTSPRVPQAVPMDLRIGQRVVKPQDTALLALKQQQLQHQLFLASLHQQQVEQLAHQHVRVAMESPHREAEPGQQEQELRQILNKDKSKRSAVASTVVKQKLAEVILKKQQAALERTSNPPAAALPYRSLEPLEPEGPSPAMLSTFLSPVPSTSLDTPEHFPLRKTASEPNLKVRCKPRKCLDRRKNPLTRKESAPPSLKRRPPDAIDSSPSSSSTPVSGCSSPNDSLPAEHVALPTAPGVAHETPLAQRLMMQESSLAQFALQSAASLPAITLGLPATTGARGDAERRALPGLAHRVPVLNGPVLPGTHSPVFIPASLEQHEAGSALSPRLQPVIILEPSVTHAPLVAVPGLGTVPLSLAPSLVPAECLALPGQHKPLGRTRSEPLPPSPRTVQQHLLFQQHHAHFLRQQPHLGKRPAKSSEKPRLRQIPSSEDMEAEGTLPEAEPGDPPRARPEPPRPGGSAKEPERTQKMGQPPEELVLQQALLWDSFQRVQQQLLKRQPLADPPVLPPGHRPLSRAQSSPATATVSLPAQDTKALALPVQEQPPKPLFTTGLVYDSVMLKHQCSCGDNSNHPEHAGRIQSIWSRLQERGLRSRCECLRGRKATLEELQSVHSERHVLLYGTNPLNRLKLDNGKLAGILSQRTFVMLPCGGLGVDSDTIWNELHSSNAARWAAGSVTELAFKVATRELKNGFAVVRPPGHHADPSTAMGFCFFNSVAIAARQLQQKGKLSKILIVDWDVHHGNGTQQIFYRDPEVLYISLHRHDDGNFFPGSGAADEVGAGPGEGFNVNVAWAGGLDPPMGDPEYLAAFRTVVMPIAHEFCPDVVLVSAGFDAAEGHPPPLGGYKVSAKCFGYMTKQLMSLAGGAVVLALEGGHDLTAICDASEACVSVLLGHEPEPLPEDSLRQKPNANAVRSLEAVIQVQSKYWVAVQRFASKLGCSFLEAQHHEADEVETVTALASLSVAVMVEKRAQEEPMEQEEPMTQ
SIO_010081: HDAC7
subclass of: SO_0000673
so part of: HDAC7
location: join(58433..58529,78840..79030,80187..80277,81143..81254,81348..81463,81793..81915,82296..82405,82826..82942,83588..83786,84013..84212,85004..85207,85932..86142,86463..86596,87261..87381,87509..87558,88552..88659,89137..89192,89340..89427,89639..89758,90335..90432,90539..90657,90929..91062,91311..91395,91676..91814,92323..92368)
location: region:58433-92368:1
so has part: feature:58433-58529:1:exon
so has part: feature:78840-79030:1:exon
so has part: feature:80187-80277:1:exon
so has part: feature:81143-81254:1:exon
so has part: feature:81348-81463:1:exon
so has part: feature:81793-81915:1:exon
so has part: feature:82296-82405:1:exon
so has part: feature:82826-82942:1:exon
so has part: feature:83588-83786:1:exon
so has part: feature:84013-84212:1:exon
so has part: feature:85004-85207:1:exon
so has part: feature:85932-86142:1:exon
so has part: feature:86463-86596:1:exon
so has part: feature:87261-87381:1:exon
so has part: feature:87509-87558:1:exon
so has part: feature:88552-88659:1:exon
so has part: feature:89137-89192:1:exon
so has part: feature:89340-89427:1:exon
so has part: feature:89639-89758:1:exon
so has part: feature:90335-90432:1:exon
so has part: feature:90539-90657:1:exon
so has part: feature:90929-91062:1:exon
so has part: feature:91311-91395:1:exon
so has part: feature:91676-91814:1:exon
so has part: feature:92323-92368:1:exon

XP_041567432.1
type: Protein
SIO_000068: ncbiprotein

position:58433:1
position: 58433
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:92368:1
position: 92368
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:58433-58529:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:78840-79030:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:80187-80277:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:81143-81254:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:81348-81463:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:81793-81915:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:82296-82405:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:82826-82942:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:83588-83786:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:84013-84212:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:85004-85207:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:85932-86142:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:86463-86596:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:87261-87381:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:87509-87558:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:88552-88659:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:89137-89192:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:89340-89427:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:89639-89758:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:90335-90432:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:90539-90657:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:90929-91062:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:91311-91395:1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:91676-91814:1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:92323-92368:1:exon

LOC100221708
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: LOC100221708
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(93998..100304)
location: region:93998-100304:-1
so has part: feature:93998-100304:-1:exon
subclass of: SO_0000010

100221708
type: Gene
SIO_000068: ncbigene

position:93998:-1
position: 93998
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:100304:-1
position: 100304
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:93998-100304:-1:exon

LOC100221708
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: LOC100221708
product: twist-related protein 2-like, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 ESTs, 12 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 69 samples with support for all annotated introns
transcript id: XM_002193548.5
SIO_010081: LOC100221708
subclass of: SO_0000673
so part of: LOC100221708
location: complement(join(93998..95559,99538..100304))
location: region:93998-100304:-1
so has part: feature:99538-100304:-1:exon
so has part: feature:93998-95559:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:99538-100304:-1:exon

position:99538:-1
position: 99538
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:93998-95559:-1:exon

position:95559:-1
position: 95559
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC100221708
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: LOC100221708
product: twist-related protein 2-like, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 38 samples with support for all annotated introns
transcript id: XM_030259155.3
SIO_010081: LOC100221708
subclass of: SO_0000673
so part of: LOC100221708
location: complement(join(97539..98320,99538..100304))
location: region:97539-100304:-1
so has part: feature:99538-100304:-1:exon
so has part: feature:97539-98320:-1:exon

position:97539:-1
position: 97539
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:99538-100304:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:97539-98320:-1:exon

position:98320:-1
position: 98320
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC100221708
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: LOC100221708
product: twist-related protein 2-like, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 36 samples with support for all annotated introns
transcript id: XM_030259154.3
SIO_010081: LOC100221708
subclass of: SO_0000673
so part of: LOC100221708
location: complement(join(97539..99064,99538..100304))
location: region:97539-100304:-1
so has part: feature:99538-100304:-1:exon
so has part: feature:97539-99064:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:99538-100304:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:97539-99064:-1:exon

position:99064:-1
position: 99064
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC100221708
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: LOC100221708
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: twist-related protein 2-like
translation: MCAGGLGVAVGRERGNLEPISSRAAGVPLHWSAPGPPPPRSPYQQEPFPKSSQRPPLLAQRRSQGAPWRALRAWGARGAPGANAPGLASGAQGAEEMKEENLSPDSPEGSAATSEDEAERLPRKSGRKRGQGPGGAPSPQGKRSRRSPGPQPPEDAHAQRVIANVRERQRTQSLNDAFAELRKIIPTLPSDKLSKIQTLKLAARYIDFLCQVLQSDELDHKVATSCNFLAHERLSYAFSVWRMEGAWSMSASH
SIO_010081: LOC100221708
subclass of: SO_0000673
so part of: LOC100221708
location: complement(99543..100304)
location: region:99543-100304:-1
so has part: feature:99543-100304:-1:exon

XP_030115014.1
type: Protein
SIO_000068: ncbiprotein

position:99543:-1
position: 99543
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:99543-100304:-1:exon

LOC100221708
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: LOC100221708
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: twist-related protein 2-like
translation: MCAGGLGVAVGRERGNLEPISSRAAGVPLHWSAPGPPPPRSPYQQEPFPKSSQRPPLLAQRRSQGAPWRALRAWGARGAPGANAPGLASGAQGAEEMKEENLSPDSPEGSAATSEDEAERLPRKSGRKRGQGPGGAPSPQGKRSRRSPGPQPPEDAHAQRVIANVRERQRTQSLNDAFAELRKIIPTLPSDKLSKIQTLKLAARYIDFLCQVLQSDELDHKVATSCNFLAHERLSYAFSVWRMEGAWSMSASH
SIO_010081: LOC100221708
subclass of: SO_0000673
so part of: LOC100221708
location: complement(99543..100304)
location: region:99543-100304:-1
so has part: feature:99543-100304:-1:exon

XP_002193584.2
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:99543-100304:-1:exon

LOC100221708
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: LOC100221708
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: twist-related protein 2-like
translation: MCAGGLGVAVGRERGNLEPISSRAAGVPLHWSAPGPPPPRSPYQQEPFPKSSQRPPLLAQRRSQGAPWRALRAWGARGAPGANAPGLASGAQGAEEMKEENLSPDSPEGSAATSEDEAERLPRKSGRKRGQGPGGAPSPQGKRSRRSPGPQPPEDAHAQRVIANVRERQRTQSLNDAFAELRKIIPTLPSDKLSKIQTLKLAARYIDFLCQVLQSDELDHKVATSCNFLAHERLSYAFSVWRMEGAWSMSASH
SIO_010081: LOC100221708
subclass of: SO_0000673
so part of: LOC100221708
location: complement(99543..100304)
location: region:99543-100304:-1
so has part: feature:99543-100304:-1:exon

XP_030115015.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:99543-100304:-1:exon

SLC48A1
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: SLC48A1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(100397..112693)
location: region:100397-112693:-1
so has part: feature:100397-112693:-1:exon
subclass of: SO_0000010

115491342
type: Gene
SIO_000068: ncbigene

position:100397:-1
position: 100397
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:112693:-1
position: 112693
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:100397-112693:-1:exon

SLC48A1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: SLC48A1
product: solute carrier family 48 member 1, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 ESTs, 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 17 samples with support for all annotated introns
transcript id: XM_041711499.1
SIO_010081: SLC48A1
subclass of: SO_0000673
so part of: SLC48A1
location: complement(join(100397..100579,107240..107389,107940..108107,112498..112678))
location: region:100397-112678:-1
so has part: feature:112498-112678:-1:exon
so has part: feature:107940-108107:-1:exon
so has part: feature:107240-107389:-1:exon
so has part: feature:100397-100579:-1:exon

position:112678:-1
position: 112678
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:112498-112678:-1:exon

position:112498:-1
position: 112498
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:107940-108107:-1:exon

position:107940:-1
position: 107940
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:108107:-1
position: 108107
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:107240-107389:-1:exon

position:107240:-1
position: 107240
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:107389:-1
position: 107389
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:100397-100579:-1:exon

position:100579:-1
position: 100579
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

SLC48A1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: SLC48A1
product: solute carrier family 48 member 1, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 ESTs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 60 samples with support for all annotated introns
transcript id: XM_030259156.3
SIO_010081: SLC48A1
subclass of: SO_0000673
so part of: SLC48A1
location: complement(join(101050..101432,107940..108107,112498..112693))
location: region:101050-112693:-1
so has part: feature:112498-112693:-1:exon
so has part: feature:107940-108107:-1:exon
so has part: feature:101050-101432:-1:exon

position:101050:-1
position: 101050
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:112498-112693:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:107940-108107:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:101050-101432:-1:exon

position:101432:-1
position: 101432
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

SLC48A1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: SLC48A1
product: solute carrier family 48 member 1, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 ESTs, 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 144 samples with support for all annotated introns
transcript id: XM_030259158.3
SIO_010081: SLC48A1
subclass of: SO_0000673
so part of: SLC48A1
location: complement(join(101050..101432,107240..107389,107940..108107,112498..112678))
location: region:101050-112678:-1
so has part: feature:112498-112678:-1:exon
so has part: feature:107940-108107:-1:exon
so has part: feature:107240-107389:-1:exon
so has part: feature:101050-101432:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:112498-112678:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:107940-108107:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:107240-107389:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:101050-101432:-1:exon

SLC48A1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: SLC48A1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: heme transporter HRG1 isoform X1
translation: MALSGALALRVAYASFGALSGLSAFCAWSAVPALRQPGTAAAGGLSGVLALWALITHVMYLQDYWRTWLKGLRFFLSVGILFSALSGLGFCAFLALAITQHQCLKFSPMCQKQHQKNPQRAGGVTETTLVPRDLSMRSLDEYPPRKTVTERTN
SIO_010081: SLC48A1
subclass of: SO_0000673
so part of: SLC48A1
location: complement(join(101278..101432,107940..108107,112498..112636))
location: region:101278-112636:-1
so has part: feature:112498-112636:-1:exon
so has part: feature:107940-108107:-1:exon
so has part: feature:101278-101432:-1:exon

XP_030115016.3
type: Protein
SIO_000068: ncbiprotein

position:101278:-1
position: 101278
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:112636:-1
position: 112636
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:112498-112636:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:107940-108107:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:101278-101432:-1:exon

SLC48A1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: SLC48A1
product: solute carrier family 48 member 1, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 ESTs, 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 162 samples with support for all annotated introns
transcript id: XM_030259157.3
SIO_010081: SLC48A1
subclass of: SO_0000673
so part of: SLC48A1
location: complement(join(106434..107389,107940..108107,112498..112677))
location: region:106434-112677:-1
so has part: feature:112498-112677:-1:exon
so has part: feature:107940-108107:-1:exon
so has part: feature:106434-107389:-1:exon

position:106434:-1
position: 106434
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:112677:-1
position: 112677
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:112498-112677:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:107940-108107:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:106434-107389:-1:exon

SLC48A1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: SLC48A1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: heme transporter HRG1 isoform X2
translation: MALSGALALRVAYASFGALSGLSAFCAWSAVPALRQPGTAAAGGLSGVLALWALITHVMYLQDYWRTWLKGLRFFLSVGILFSALSGLGFCAFLALAITQHQSLTDPKSYYLSCVWSFMALKWALLLSLYSHRYRAEFADISILSDF
SIO_010081: SLC48A1
subclass of: SO_0000673
so part of: SLC48A1
location: complement(join(107253..107389,107940..108107,112498..112636))
location: region:107253-112636:-1
so has part: feature:112498-112636:-1:exon
so has part: feature:107940-108107:-1:exon
so has part: feature:107253-107389:-1:exon

XP_030115017.3
type: Protein
SIO_000068: ncbiprotein

position:107253:-1
position: 107253
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:112498-112636:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:107940-108107:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:107253-107389:-1:exon

SLC48A1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: SLC48A1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: heme transporter HRG1 isoform X2
translation: MALSGALALRVAYASFGALSGLSAFCAWSAVPALRQPGTAAAGGLSGVLALWALITHVMYLQDYWRTWLKGLRFFLSVGILFSALSGLGFCAFLALAITQHQSLTDPKSYYLSCVWSFMALKWALLLSLYSHRYRAEFADISILSDF
SIO_010081: SLC48A1
subclass of: SO_0000673
so part of: SLC48A1
location: complement(join(107253..107389,107940..108107,112498..112636))
location: region:107253-112636:-1
so has part: feature:112498-112636:-1:exon
so has part: feature:107940-108107:-1:exon
so has part: feature:107253-107389:-1:exon

XP_030115018.3
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:112498-112636:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:107940-108107:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:107253-107389:-1:exon

SLC48A1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: SLC48A1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: heme transporter HRG1 isoform X2
translation: MALSGALALRVAYASFGALSGLSAFCAWSAVPALRQPGTAAAGGLSGVLALWALITHVMYLQDYWRTWLKGLRFFLSVGILFSALSGLGFCAFLALAITQHQSLTDPKSYYLSCVWSFMALKWALLLSLYSHRYRAEFADISILSDF
SIO_010081: SLC48A1
subclass of: SO_0000673
so part of: SLC48A1
location: complement(join(107253..107389,107940..108107,112498..112636))
location: region:107253-112636:-1
so has part: feature:112498-112636:-1:exon
so has part: feature:107940-108107:-1:exon
so has part: feature:107253-107389:-1:exon

XP_041567433.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:112498-112636:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:107940-108107:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:107253-107389:-1:exon

LOC115491367
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: LOC115491367
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 113453..116909
location: region:113453-116909:1
so has part: feature:113453-116909:1:exon
subclass of: SO_0000011

115491367
type: Gene
SIO_000068: ncbigene

position:113453:1
position: 113453
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:116909:1
position: 116909
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:113453-116909:1:exon

LOC115491367
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 59729
nc RNA class: lncRNA
gene: LOC115491367
product: uncharacterized LOC115491367
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XR_003957279.3
SIO_010081: LOC115491367
subclass of: SO_0000673
so part of: LOC115491367
location: join(113453..113554,114633..114667,116565..116909)
location: region:113453-116909:1
so has part: feature:113453-113554:1:exon
so has part: feature:114633-114667:1:exon
so has part: feature:116565-116909:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:113453-113554:1:exon

position:113554:1
position: 113554
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:114633-114667:1:exon

position:114633:1
position: 114633
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:114667:1
position: 114667
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:116565-116909:1:exon

position:116565:1
position: 116565
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

RAPGEF3
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: RAPGEF3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 119908..133637
location: region:119908-133637:1
so has part: feature:119908-133637:1:exon
subclass of: SO_0000010

115491504
type: Gene
SIO_000068: ncbigene

position:119908:1
position: 119908
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:133637:1
position: 133637
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:119908-133637:1:exon

RAPGEF3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: RAPGEF3
product: Rap guanine nucleotide exchange factor 3, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 17 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 54 samples with support for all annotated introns
transcript id: XM_032744845.2
SIO_010081: RAPGEF3
subclass of: SO_0000673
so part of: RAPGEF3
location: join(119908..120162,124541..124594,124803..124909,124988..125109,125194..125368,125580..125664,125958..126018,126113..126189,126516..126662,126791..126900,127116..127207,127841..127919,128115..128265,128360..128442,128830..128869,128981..129062,129131..129277,129373..129470,129593..129718,129918..130099,130371..130461,130581..130631,130948..131035,131114..131178,131334..131388,132154..132225,132481..133637)
location: region:119908-133637:1
so has part: feature:119908-120162:1:exon
so has part: feature:124541-124594:1:exon
so has part: feature:124803-124909:1:exon
so has part: feature:124988-125109:1:exon
so has part: feature:125194-125368:1:exon
so has part: feature:125580-125664:1:exon
so has part: feature:125958-126018:1:exon
so has part: feature:126113-126189:1:exon
so has part: feature:126516-126662:1:exon
so has part: feature:126791-126900:1:exon
so has part: feature:127116-127207:1:exon
so has part: feature:127841-127919:1:exon
so has part: feature:128115-128265:1:exon
so has part: feature:128360-128442:1:exon
so has part: feature:128830-128869:1:exon
so has part: feature:128981-129062:1:exon
so has part: feature:129131-129277:1:exon
so has part: feature:129373-129470:1:exon
so has part: feature:129593-129718:1:exon
so has part: feature:129918-130099:1:exon
so has part: feature:130371-130461:1:exon
so has part: feature:130581-130631:1:exon
so has part: feature:130948-131035:1:exon
so has part: feature:131114-131178:1:exon
so has part: feature:131334-131388:1:exon
so has part: feature:132154-132225:1:exon
so has part: feature:132481-133637:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:119908-120162:1:exon

position:120162:1
position: 120162
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:124541-124594:1:exon

position:124541:1
position: 124541
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:124594:1
position: 124594
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:124803-124909:1:exon

position:124803:1
position: 124803
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:124909:1
position: 124909
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:124988-125109:1:exon

position:124988:1
position: 124988
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:125109:1
position: 125109
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:125194-125368:1:exon

position:125194:1
position: 125194
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:125368:1
position: 125368
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:125580-125664:1:exon

position:125580:1
position: 125580
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:125664:1
position: 125664
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:125958-126018:1:exon

position:125958:1
position: 125958
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:126018:1
position: 126018
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:126113-126189:1:exon

position:126113:1
position: 126113
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:126189:1
position: 126189
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:126516-126662:1:exon

position:126516:1
position: 126516
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:126662:1
position: 126662
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:126791-126900:1:exon

position:126791:1
position: 126791
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:126900:1
position: 126900
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:127116-127207:1:exon

position:127116:1
position: 127116
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:127207:1
position: 127207
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:127841-127919:1:exon

position:127841:1
position: 127841
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:127919:1
position: 127919
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:128115-128265:1:exon

position:128115:1
position: 128115
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:128265:1
position: 128265
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:128360-128442:1:exon

position:128360:1
position: 128360
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:128442:1
position: 128442
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:128830-128869:1:exon

position:128830:1
position: 128830
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:128869:1
position: 128869
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:128981-129062:1:exon

position:128981:1
position: 128981
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:129062:1
position: 129062
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:129131-129277:1:exon

position:129131:1
position: 129131
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:129277:1
position: 129277
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:129373-129470:1:exon

position:129373:1
position: 129373
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:129470:1
position: 129470
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:129593-129718:1:exon

position:129593:1
position: 129593
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:129718:1
position: 129718
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:129918-130099:1:exon

position:129918:1
position: 129918
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:130099:1
position: 130099
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:130371-130461:1:exon

position:130371:1
position: 130371
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:130461:1
position: 130461
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 22
SIO_000628: feature:130581-130631:1:exon

position:130581:1
position: 130581
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:130631:1
position: 130631
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 23
SIO_000628: feature:130948-131035:1:exon

position:130948:1
position: 130948
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:131035:1
position: 131035
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 24
SIO_000628: feature:131114-131178:1:exon

position:131114:1
position: 131114
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:131178:1
position: 131178
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 25
SIO_000628: feature:131334-131388:1:exon

position:131334:1
position: 131334
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:131388:1
position: 131388
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 26
SIO_000628: feature:132154-132225:1:exon

position:132154:1
position: 132154
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:132225:1
position: 132225
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 27
SIO_000628: feature:132481-133637:1:exon

position:132481:1
position: 132481
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

RAPGEF3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: RAPGEF3
product: Rap guanine nucleotide exchange factor 3, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 21 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 56 samples with support for all annotated introns
transcript id: XM_032744847.2
SIO_010081: RAPGEF3
subclass of: SO_0000673
so part of: RAPGEF3
location: join(119908..120162,124541..124594,124803..124909,124988..125109,125194..125368,125580..125664,125958..126018,126113..126189,126516..126662,126791..126900,127119..127207,127841..127919,128115..128265,128360..128442,128830..128869,128981..129062,129131..129277,129373..129470,129593..129718,129918..130099,130371..130461,130581..130631,130948..131035,131114..131178,131334..131388,132154..132225,132481..133637)
location: region:119908-133637:1
so has part: feature:119908-120162:1:exon
so has part: feature:124541-124594:1:exon
so has part: feature:124803-124909:1:exon
so has part: feature:124988-125109:1:exon
so has part: feature:125194-125368:1:exon
so has part: feature:125580-125664:1:exon
so has part: feature:125958-126018:1:exon
so has part: feature:126113-126189:1:exon
so has part: feature:126516-126662:1:exon
so has part: feature:126791-126900:1:exon
so has part: feature:127119-127207:1:exon
so has part: feature:127841-127919:1:exon
so has part: feature:128115-128265:1:exon
so has part: feature:128360-128442:1:exon
so has part: feature:128830-128869:1:exon
so has part: feature:128981-129062:1:exon
so has part: feature:129131-129277:1:exon
so has part: feature:129373-129470:1:exon
so has part: feature:129593-129718:1:exon
so has part: feature:129918-130099:1:exon
so has part: feature:130371-130461:1:exon
so has part: feature:130581-130631:1:exon
so has part: feature:130948-131035:1:exon
so has part: feature:131114-131178:1:exon
so has part: feature:131334-131388:1:exon
so has part: feature:132154-132225:1:exon
so has part: feature:132481-133637:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:119908-120162:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:124541-124594:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:124803-124909:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:124988-125109:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:125194-125368:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:125580-125664:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:125958-126018:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:126113-126189:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:126516-126662:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:126791-126900:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:127119-127207:1:exon

position:127119:1
position: 127119
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:127841-127919:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:128115-128265:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:128360-128442:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:128830-128869:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:128981-129062:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:129131-129277:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:129373-129470:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:129593-129718:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:129918-130099:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:130371-130461:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:130581-130631:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:130948-131035:1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:131114-131178:1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:131334-131388:1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:132154-132225:1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:132481-133637:1:exon

RAPGEF3
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 59729
gene: RAPGEF3
product: Rap guanine nucleotide exchange factor 3, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 37 samples with support for all annotated introns
transcript id: XR_004366050.2
SIO_010081: RAPGEF3
so part of: RAPGEF3
location: join(119908..120162,124541..124594,124803..124909,124988..125109,125194..125368,125580..125664,125958..126018,126113..126189,126516..126662,126791..126900,127116..127207,127841..127919,128115..128265,128360..128442,128830..128869,128981..129062,129131..129277,129373..129470,129593..129718,129918..130099,130371..130461,130581..130631,131114..131178,131334..131349)
location: region:119908-131349:1
so has part: feature:119908-120162:1:exon
so has part: feature:124541-124594:1:exon
so has part: feature:124803-124909:1:exon
so has part: feature:124988-125109:1:exon
so has part: feature:125194-125368:1:exon
so has part: feature:125580-125664:1:exon
so has part: feature:125958-126018:1:exon
so has part: feature:126113-126189:1:exon
so has part: feature:126516-126662:1:exon
so has part: feature:126791-126900:1:exon
so has part: feature:127116-127207:1:exon
so has part: feature:127841-127919:1:exon
so has part: feature:128115-128265:1:exon
so has part: feature:128360-128442:1:exon
so has part: feature:128830-128869:1:exon
so has part: feature:128981-129062:1:exon
so has part: feature:129131-129277:1:exon
so has part: feature:129373-129470:1:exon
so has part: feature:129593-129718:1:exon
so has part: feature:129918-130099:1:exon
so has part: feature:130371-130461:1:exon
so has part: feature:130581-130631:1:exon
so has part: feature:131114-131178:1:exon
so has part: feature:131334-131349:1:exon

position:131349:1
position: 131349
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:119908-120162:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:124541-124594:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:124803-124909:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:124988-125109:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:125194-125368:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:125580-125664:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:125958-126018:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:126113-126189:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:126516-126662:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:126791-126900:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:127116-127207:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:127841-127919:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:128115-128265:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:128360-128442:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:128830-128869:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:128981-129062:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:129131-129277:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:129373-129470:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:129593-129718:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:129918-130099:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:130371-130461:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:130581-130631:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:131114-131178:1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:131334-131349:1:exon

RAPGEF3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: RAPGEF3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: rap guanine nucleotide exchange factor 3 isoform X1
translation: MKVRGAGPGAAAGGARRGAGPGPAGPEPGSAPPQPPGGPGADGARLSGLLRKMHLFRSSSYEVRLEGAGGSLPRIQGIRWTPLLDSESSLDYGHSITQASSERVWRAGKLLFAHLSSSRPGLIRDHKHHLRHHRQCCSGKDLVDWLLSAGAAVQTRGQAVGIGQVLVDGGVLTHVRQEWHFQDKETQFYRFAELELSPEPGAGPRDPEELLEALGFLAQLGPDALLSMALRKPPAQRTQDELELIFEELLHIKAVAHLSNSVKRELAAVLMFEGHQRAGTVLFSQGDKGTSWYIIWKGSVNVVTHGKGLVATLHEGDDFGQLALVNDAPRAATILLREDNCHFLRVDKQDFNRILKDVEANTVRLKEHGKVVLVLQKDLQGGSGQAASARSSSRYLVMAGTPEKILEHLLEFMRLDATLYDPVDTLLGDFLLTYTVFMPTSQLCRALLHHFRAEPLEGSEQDKAAYSLRKRRKILRLVSQWVLLYGRLLQGDRSTTALLQNLADLASRDPELGGLGQEQGQERRRPRALENGDGSVSPQPKARSSGMRLGSPEEAIPDSSCALRAQDKVPYEIFRADHSCVAPVLPVNAAVRDVLRALAPRLRRDREHVLVRVNSAGERAVLPQDAVGVFTALGLNERLFVVSRDELGTLTPHPEQLGPHAGSSDTLDLISSKELASHLTDYDWNLFKSIHQVEMIHYIVGPHKSHEVATANLARVMRRFNELQFWVATELCLCPELGRRAQLLRKFIKLAAHLKEQKNLNSFFAVMFGVSNTAVTRLAKTWERLPHKIRKLHSALERMLDPSWNHRVYRLAMAKLSPPIIPFVPLLLKDMTFIHEGNRTLAENLINFEKMHMMAKTVRVLQRCRGHAHAPLSPLRSRSPHRPEDAKAVRISTCSEQSLSARSPVSTWAYLQHLRAIDSQKELLRLSRELEP
SIO_010081: RAPGEF3
subclass of: SO_0000673
so part of: RAPGEF3
location: join(119923..120162,124541..124594,124803..124909,124988..125109,125194..125368,125580..125664,125958..126018,126113..126189,126516..126662,126791..126900,127116..127207,127841..127919,128115..128265,128360..128442,128830..128869,128981..129062,129131..129277,129373..129470,129593..129718,129918..130099,130371..130461,130581..130631,130948..131035,131114..131178,131334..131388,132154..132225,132481..132599)
location: region:119923-132599:1
so has part: feature:119923-120162:1:exon
so has part: feature:124541-124594:1:exon
so has part: feature:124803-124909:1:exon
so has part: feature:124988-125109:1:exon
so has part: feature:125194-125368:1:exon
so has part: feature:125580-125664:1:exon
so has part: feature:125958-126018:1:exon
so has part: feature:126113-126189:1:exon
so has part: feature:126516-126662:1:exon
so has part: feature:126791-126900:1:exon
so has part: feature:127116-127207:1:exon
so has part: feature:127841-127919:1:exon
so has part: feature:128115-128265:1:exon
so has part: feature:128360-128442:1:exon
so has part: feature:128830-128869:1:exon
so has part: feature:128981-129062:1:exon
so has part: feature:129131-129277:1:exon
so has part: feature:129373-129470:1:exon
so has part: feature:129593-129718:1:exon
so has part: feature:129918-130099:1:exon
so has part: feature:130371-130461:1:exon
so has part: feature:130581-130631:1:exon
so has part: feature:130948-131035:1:exon
so has part: feature:131114-131178:1:exon
so has part: feature:131334-131388:1:exon
so has part: feature:132154-132225:1:exon
so has part: feature:132481-132599:1:exon

XP_032600736.2
type: Protein
SIO_000068: ncbiprotein

position:119923:1
position: 119923
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:132599:1
position: 132599
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:119923-120162:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:124541-124594:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:124803-124909:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:124988-125109:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:125194-125368:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:125580-125664:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:125958-126018:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:126113-126189:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:126516-126662:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:126791-126900:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:127116-127207:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:127841-127919:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:128115-128265:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:128360-128442:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:128830-128869:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:128981-129062:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:129131-129277:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:129373-129470:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:129593-129718:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:129918-130099:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:130371-130461:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:130581-130631:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:130948-131035:1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:131114-131178:1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:131334-131388:1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:132154-132225:1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:132481-132599:1:exon

RAPGEF3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: RAPGEF3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: rap guanine nucleotide exchange factor 3 isoform X2
translation: MKVRGAGPGAAAGGARRGAGPGPAGPEPGSAPPQPPGGPGADGARLSGLLRKMHLFRSSSYEVRLEGAGGSLPRIQGIRWTPLLDSESSLDYGHSITQASSERVWRAGKLLFAHLSSSRPGLIRDHKHHLRHHRQCCSGKDLVDWLLSAGAAVQTRGQAVGIGQVLVDGGVLTHVRQEWHFQDKETQFYRFAELELSPEPGAGPRDPEELLEALGFLAQLGPDALLSMALRKPPAQRTQDELELIFEELLHIKAVAHLSNSVKRELAAVLMFEGHQRAGTVLFSQGDKGTSWYIIWKGSVNVVTHGKGLVATLHEGDDFGQLALVNDAPRAATILLREDNCHFLRVDKQDFNRILKDVEANTVRLKEHGKVVLVLQKDLQGGSGQAASARSSRYLVMAGTPEKILEHLLEFMRLDATLYDPVDTLLGDFLLTYTVFMPTSQLCRALLHHFRAEPLEGSEQDKAAYSLRKRRKILRLVSQWVLLYGRLLQGDRSTTALLQNLADLASRDPELGGLGQEQGQERRRPRALENGDGSVSPQPKARSSGMRLGSPEEAIPDSSCALRAQDKVPYEIFRADHSCVAPVLPVNAAVRDVLRALAPRLRRDREHVLVRVNSAGERAVLPQDAVGVFTALGLNERLFVVSRDELGTLTPHPEQLGPHAGSSDTLDLISSKELASHLTDYDWNLFKSIHQVEMIHYIVGPHKSHEVATANLARVMRRFNELQFWVATELCLCPELGRRAQLLRKFIKLAAHLKEQKNLNSFFAVMFGVSNTAVTRLAKTWERLPHKIRKLHSALERMLDPSWNHRVYRLAMAKLSPPIIPFVPLLLKDMTFIHEGNRTLAENLINFEKMHMMAKTVRVLQRCRGHAHAPLSPLRSRSPHRPEDAKAVRISTCSEQSLSARSPVSTWAYLQHLRAIDSQKELLRLSRELEP
SIO_010081: RAPGEF3
subclass of: SO_0000673
so part of: RAPGEF3
location: join(119923..120162,124541..124594,124803..124909,124988..125109,125194..125368,125580..125664,125958..126018,126113..126189,126516..126662,126791..126900,127119..127207,127841..127919,128115..128265,128360..128442,128830..128869,128981..129062,129131..129277,129373..129470,129593..129718,129918..130099,130371..130461,130581..130631,130948..131035,131114..131178,131334..131388,132154..132225,132481..132599)
location: region:119923-132599:1
so has part: feature:119923-120162:1:exon
so has part: feature:124541-124594:1:exon
so has part: feature:124803-124909:1:exon
so has part: feature:124988-125109:1:exon
so has part: feature:125194-125368:1:exon
so has part: feature:125580-125664:1:exon
so has part: feature:125958-126018:1:exon
so has part: feature:126113-126189:1:exon
so has part: feature:126516-126662:1:exon
so has part: feature:126791-126900:1:exon
so has part: feature:127119-127207:1:exon
so has part: feature:127841-127919:1:exon
so has part: feature:128115-128265:1:exon
so has part: feature:128360-128442:1:exon
so has part: feature:128830-128869:1:exon
so has part: feature:128981-129062:1:exon
so has part: feature:129131-129277:1:exon
so has part: feature:129373-129470:1:exon
so has part: feature:129593-129718:1:exon
so has part: feature:129918-130099:1:exon
so has part: feature:130371-130461:1:exon
so has part: feature:130581-130631:1:exon
so has part: feature:130948-131035:1:exon
so has part: feature:131114-131178:1:exon
so has part: feature:131334-131388:1:exon
so has part: feature:132154-132225:1:exon
so has part: feature:132481-132599:1:exon

XP_032600738.2
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:119923-120162:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:124541-124594:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:124803-124909:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:124988-125109:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:125194-125368:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:125580-125664:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:125958-126018:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:126113-126189:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:126516-126662:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:126791-126900:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:127119-127207:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:127841-127919:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:128115-128265:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:128360-128442:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:128830-128869:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:128981-129062:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:129131-129277:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:129373-129470:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:129593-129718:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:129918-130099:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:130371-130461:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:130581-130631:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:130948-131035:1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:131114-131178:1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:131334-131388:1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:132154-132225:1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:132481-132599:1:exon

ENDOU
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: ENDOU
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 137545..143541
location: region:137545-143541:1
so has part: feature:137545-143541:1:exon
subclass of: SO_0000010

100217818
type: Gene
SIO_000068: ncbigene

position:137545:1
position: 137545
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:143541:1
position: 143541
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:137545-143541:1:exon

ENDOU
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: ENDOU
product: endonuclease, poly(U) specific
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 93% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_041711484.1
SIO_010081: ENDOU
subclass of: SO_0000673
so part of: ENDOU
location: join(137545..137617,139356..139517,139657..139692,140297..140468,140554..140753,141753..141866,141955..142061,142491..142633,143171..143541)
location: region:137545-143541:1
so has part: feature:137545-137617:1:exon
so has part: feature:139356-139517:1:exon
so has part: feature:139657-139692:1:exon
so has part: feature:140297-140468:1:exon
so has part: feature:140554-140753:1:exon
so has part: feature:141753-141866:1:exon
so has part: feature:141955-142061:1:exon
so has part: feature:142491-142633:1:exon
so has part: feature:143171-143541:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:137545-137617:1:exon

position:137617:1
position: 137617
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:139356-139517:1:exon

position:139356:1
position: 139356
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:139517:1
position: 139517
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:139657-139692:1:exon

position:139657:1
position: 139657
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:139692:1
position: 139692
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:140297-140468:1:exon

position:140297:1
position: 140297
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:140468:1
position: 140468
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:140554-140753:1:exon

position:140554:1
position: 140554
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:140753:1
position: 140753
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:141753-141866:1:exon

position:141753:1
position: 141753
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:141866:1
position: 141866
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:141955-142061:1:exon

position:141955:1
position: 141955
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:142061:1
position: 142061
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:142491-142633:1:exon

position:142491:1
position: 142491
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:142633:1
position: 142633
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:143171-143541:1:exon

position:143171:1
position: 143171
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ENDOU
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: ENDOU
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: poly(U)-specific endoribonuclease
translation: MALSWPGQDVPQQDLPRGHLSAELGSPPLCVPKDLYTAPDSCEGRCGEPFSEEDECHCHPECVTHDNCCEDHERHCGPGAEGAEDGARNRDGFSSSRDSITEQELLELSEQLYGLDHNKARPSDIAINPQHRAGPEETGDKQDRSPQPLYKYVNEELFSKPTYASFIKLLDNYQRATGREEEVTAEELREQQRFLEEVMKTELMKKLFVFLQGKNRYSSEQEFLQDLEQMWFGLYSRGDGERDSSGFEHVFSGEVKKGKVSGFHNWIRFYLLEKQGVVNYFSHNFNGPWDSYPDVLGLQFSWDGFYKEVGSVFIGCSPEFEFGLYSLCFLARPGRACHLSLGGHRLSIQTYPWTKSTYGSGRRFIATAYVMSA
SIO_010081: ENDOU
subclass of: SO_0000673
so part of: ENDOU
location: join(137545..137617,139356..139517,139657..139692,140297..140468,140554..140753,141753..141866,141955..142061,142491..142633,143171..143285)
location: region:137545-143285:1
so has part: feature:137545-137617:1:exon
so has part: feature:139356-139517:1:exon
so has part: feature:139657-139692:1:exon
so has part: feature:140297-140468:1:exon
so has part: feature:140554-140753:1:exon
so has part: feature:141753-141866:1:exon
so has part: feature:141955-142061:1:exon
so has part: feature:142491-142633:1:exon
so has part: feature:143171-143285:1:exon

XP_041567418.1
type: Protein
SIO_000068: ncbiprotein

position:143285:1
position: 143285
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:137545-137617:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:139356-139517:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:139657-139692:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:140297-140468:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:140554-140753:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:141753-141866:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:141955-142061:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:142491-142633:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:143171-143285:1:exon

NEUROD4
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: NEUROD4
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(153671..155433)
location: region:153671-155433:-1
so has part: feature:153671-155433:-1:exon
subclass of: SO_0000010

121468267
type: Gene
SIO_000068: ncbigene

position:153671:-1
position: 153671
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:155433:-1
position: 155433
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:153671-155433:-1:exon

NEUROD4
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: NEUROD4
product: neuronal differentiation 4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 23 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_041711635.1
SIO_010081: NEUROD4
subclass of: SO_0000673
so part of: NEUROD4
location: complement(153671..155433)
location: region:153671-155433:-1
so has part: feature:153671-155433:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:153671-155433:-1:exon

NEUROD4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: NEUROD4
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: neurogenic differentiation factor 4
translation: MAELLSGQAWLEETPPAKARLEEGDARSAPFALGPALAEERDSAEEEEEEEEEEDGEKPKRRGPKKKKMTKARLERFRARRVKANARERTRMHGLNDALDNLRRVMPCYSKTQKLSKIETLRLARNYIWALSEVLETGQTPEGKSFVEMLCKGLSQPTSNLVAGCLQLGPQPLFVEKHEEKPCEPALPGHSFAYQGLPSPPYGSMESHLLHLKPPAFKSLVDASFGGHPSDCSTPPYEGPLTPPLSISGNFSLKQDGSPELEKSYPFMAHYPGGHGHGSHFQGPVPRYEIPLDVTFESFPPHLAGPQLGAIFNE
SIO_010081: NEUROD4
subclass of: SO_0000673
so part of: NEUROD4
location: complement(154152..155096)
location: region:154152-155096:-1
so has part: feature:154152-155096:-1:exon

XP_041567569.1
type: Protein
SIO_000068: ncbiprotein

position:154152:-1
position: 154152
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:155096:-1
position: 155096
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:154152-155096:-1:exon

LOC121468243
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: LOC121468243
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(167908..168738)
location: region:167908-168738:-1
so has part: feature:167908-168738:-1:exon
subclass of: SO_0000011

121468243
type: Gene
SIO_000068: ncbigene

position:167908:-1
position: 167908
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:168738:-1
position: 168738
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:167908-168738:-1:exon

LOC121468243
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 59729
nc RNA class: lncRNA
gene: LOC121468243
product: uncharacterized LOC121468243
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 87 samples with support for all annotated introns
transcript id: XR_005978309.1
SIO_010081: LOC121468243
subclass of: SO_0000673
so part of: LOC121468243
location: complement(join(167908..168367,168457..168738))
location: region:167908-168738:-1
so has part: feature:168457-168738:-1:exon
so has part: feature:167908-168367:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:168457-168738:-1:exon

position:168457:-1
position: 168457
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:167908-168367:-1:exon

position:168367:-1
position: 168367
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

TESPA1
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: TESPA1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(<169007..174065)
location: region:169007-174065:-1
so has part: feature:169007-174065:-1:exon
subclass of: SO_0000010

121468226
type: Gene
SIO_000068: ncbigene

position:169007:-1
position: 169007
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:174065:-1
position: 174065
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:169007-174065:-1:exon

TESPA1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: TESPA1
product: thymocyte expressed, positive selection associated 1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XM_041711485.1
SIO_010081: TESPA1
subclass of: SO_0000673
so part of: TESPA1
location: complement(join(<169007..169572,170085..170293,170380..170493,170579..170615,170867..170920,171392..171579,172374..172495,172813..174065))
location: region:169007-174065:-1
so has part: feature:172813-174065:-1:exon
so has part: feature:172374-172495:-1:exon
so has part: feature:171392-171579:-1:exon
so has part: feature:170867-170920:-1:exon
so has part: feature:170579-170615:-1:exon
so has part: feature:170380-170493:-1:exon
so has part: feature:170085-170293:-1:exon
so has part: feature:169007-169572:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:172813-174065:-1:exon

position:172813:-1
position: 172813
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:172374-172495:-1:exon

position:172374:-1
position: 172374
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:172495:-1
position: 172495
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:171392-171579:-1:exon

position:171392:-1
position: 171392
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:171579:-1
position: 171579
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:170867-170920:-1:exon

position:170867:-1
position: 170867
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:170920:-1
position: 170920
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:170579-170615:-1:exon

position:170579:-1
position: 170579
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:170615:-1
position: 170615
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:170380-170493:-1:exon

position:170380:-1
position: 170380
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:170493:-1
position: 170493
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:170085-170293:-1:exon

position:170085:-1
position: 170085
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:170293:-1
position: 170293
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:169007-169572:-1:exon

position:169572:-1
position: 169572
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

TESPA1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: TESPA1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: protein TESPA1
translation: MGAGRGAGGAGGRCPRAPAGRRELPGGPRCRAPPGPPALEGTSVLGPCSWQSRGWRSPAGQEQEEEEEEEEEEEQEVAAVPGEPPQPDPAVPAACGSSGTSLEHELTPGAEALPLPGSPQAAGRAHRDWRLSPGDSMAISVPCGVPSGVPSGVPCGVPSSSSLAEVLAWWQSDAEEILHGLGFVGSEAGVASRVPPRFFSAPSRASGIDLGLFLRAQVRRLEMEDPCLLLASRFQQLQALAATADAFFCLYSRVSRTPPQRIAPPRPCRDIPVSRPGQRLKRAVSSLCLCTGGGHGDIPRGATPGPRGAPGTGGAPGGCRGDGDTGRCWRSPRPPPAWGHPERGRGVRGRGGAPCPAMAARGDTGDTRGDVTVSPPRASRVGVTPERPAGPRPPGRVPATPEPPGAAESSELEEVRRRRR
SIO_010081: TESPA1
subclass of: SO_0000673
so part of: TESPA1
location: complement(join(<169007..169572,170085..170293,170380..170493,170579..170615,170867..170920,171392..171579,172374..172465))
location: region:169007-172465:-1
so has part: feature:172374-172465:-1:exon
so has part: feature:171392-171579:-1:exon
so has part: feature:170867-170920:-1:exon
so has part: feature:170579-170615:-1:exon
so has part: feature:170380-170493:-1:exon
so has part: feature:170085-170293:-1:exon
so has part: feature:169007-169572:-1:exon

XP_041567419.1
type: Protein
SIO_000068: ncbiprotein

position:172465:-1
position: 172465
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:172374-172465:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:171392-171579:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:170867-170920:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:170579-170615:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:170380-170493:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:170085-170293:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:169007-169572:-1:exon

PPP1R1A
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: PPP1R1A
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 175698..180903
location: region:175698-180903:1
so has part: feature:175698-180903:1:exon
subclass of: SO_0000010

121468233
type: Gene
SIO_000068: ncbigene

position:175698:1
position: 175698
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:180903:1
position: 180903
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:175698-180903:1:exon

PPP1R1A
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: PPP1R1A
product: protein phosphatase 1 regulatory inhibitor subunit 1A, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 66 samples with support for all annotated introns
transcript id: XM_041711540.1
SIO_010081: PPP1R1A
subclass of: SO_0000673
so part of: PPP1R1A
location: join(175698..175850,178905..178965,179465..179502,179599..179662,179897..180046,180122..180291,180851..180903)
location: region:175698-180903:1
so has part: feature:175698-175850:1:exon
so has part: feature:178905-178965:1:exon
so has part: feature:179465-179502:1:exon
so has part: feature:179599-179662:1:exon
so has part: feature:179897-180046:1:exon
so has part: feature:180122-180291:1:exon
so has part: feature:180851-180903:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:175698-175850:1:exon

position:175850:1
position: 175850
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:178905-178965:1:exon

position:178905:1
position: 178905
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:178965:1
position: 178965
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:179465-179502:1:exon

position:179465:1
position: 179465
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:179502:1
position: 179502
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:179599-179662:1:exon

position:179599:1
position: 179599
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:179662:1
position: 179662
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:179897-180046:1:exon

position:179897:1
position: 179897
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:180046:1
position: 180046
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:180122-180291:1:exon

position:180122:1
position: 180122
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:180291:1
position: 180291
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:180851-180903:1:exon

position:180851:1
position: 180851
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

PPP1R1A
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: PPP1R1A
product: protein phosphatase 1 regulatory inhibitor subunit 1A, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 50 samples with support for all annotated introns
transcript id: XM_041711541.1
SIO_010081: PPP1R1A
subclass of: SO_0000673
so part of: PPP1R1A
location: join(175698..175850,178905..178965,179465..179502,179599..179662,179897..180046,180134..180291,180851..180903)
location: region:175698-180903:1
so has part: feature:175698-175850:1:exon
so has part: feature:178905-178965:1:exon
so has part: feature:179465-179502:1:exon
so has part: feature:179599-179662:1:exon
so has part: feature:179897-180046:1:exon
so has part: feature:180134-180291:1:exon
so has part: feature:180851-180903:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:175698-175850:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:178905-178965:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:179465-179502:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:179599-179662:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:179897-180046:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:180134-180291:1:exon

position:180134:1
position: 180134
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:180851-180903:1:exon

PPP1R1A
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: PPP1R1A
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: protein phosphatase 1 regulatory subunit 1A isoform X1
translation: MEPNSPRKIQFTVPLLEPHLDPEAAEQIRRRRPTPANLVLSSDQSSPEIDEDRLPNPLLKSGLAMSPRQRKKVARSTPTMKELQMMVEHHLCQQPQGPEDEEEAAAAARCPRGEPGHRHSPGGSCPAQGGHRTPAGTPGDGTPQTGTPRAGTPQTGTPRAGTPGTARRGRAEDGTHIEAGDSAGSGH
SIO_010081: PPP1R1A
subclass of: SO_0000673
so part of: PPP1R1A
location: join(175770..175850,178905..178965,179465..179502,179599..179662,179897..180046,180122..180291)
location: region:175770-180291:1
so has part: feature:175770-175850:1:exon
so has part: feature:178905-178965:1:exon
so has part: feature:179465-179502:1:exon
so has part: feature:179599-179662:1:exon
so has part: feature:179897-180046:1:exon
so has part: feature:180122-180291:1:exon

XP_041567474.1
type: Protein
SIO_000068: ncbiprotein

position:175770:1
position: 175770
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:175770-175850:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:178905-178965:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:179465-179502:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:179599-179662:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:179897-180046:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:180122-180291:1:exon

PPP1R1A
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: PPP1R1A
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: protein phosphatase 1 regulatory subunit 1A isoform X2
translation: MEPNSPRKIQFTVPLLEPHLDPEAAEQIRRRRPTPANLVLSSDQSSPEIDEDRLPNPLLKSGLAMSPRQRKKVARSTPTMKELQMMVEHHLCQQPQGPEDEEEAAAAARCPRGEPGHRHSPGGSCPAQGGHRTPGDGTPQTGTPRAGTPQTGTPRAGTPGTARRGRAEDGTHIEAGDSAGSGH
SIO_010081: PPP1R1A
subclass of: SO_0000673
so part of: PPP1R1A
location: join(175770..175850,178905..178965,179465..179502,179599..179662,179897..180046,180134..180291)
location: region:175770-180291:1
so has part: feature:175770-175850:1:exon
so has part: feature:178905-178965:1:exon
so has part: feature:179465-179502:1:exon
so has part: feature:179599-179662:1:exon
so has part: feature:179897-180046:1:exon
so has part: feature:180134-180291:1:exon

XP_041567475.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:175770-175850:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:178905-178965:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:179465-179502:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:179599-179662:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:179897-180046:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:180134-180291:1:exon

LOC121468232
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: LOC121468232
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(182347..183252)
location: region:182347-183252:-1
so has part: feature:182347-183252:-1:exon
subclass of: SO_0000010

121468232
type: Gene
SIO_000068: ncbigene

position:182347:-1
position: 182347
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:183252:-1
position: 183252
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:182347-183252:-1:exon

LOC121468232
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: LOC121468232
product: uncharacterized LOC121468232
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 52 samples with support for all annotated introns
transcript id: XM_041711539.1
SIO_010081: LOC121468232
subclass of: SO_0000673
so part of: LOC121468232
location: complement(join(182347..182475,182507..183252))
location: region:182347-183252:-1
so has part: feature:182507-183252:-1:exon
so has part: feature:182347-182475:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:182507-183252:-1:exon

position:182507:-1
position: 182507
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:182347-182475:-1:exon

position:182475:-1
position: 182475
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC121468232
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: LOC121468232
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: uncharacterized protein LOC121468232
translation: MSPLPATSGECSGMFGNVRECSGMIPDPAPAASGPQNVWGIPECLGHSWDSQNVWGILGNPGMFGEPRNVWGTLRPRPVPWEPARIPEHPRQHPGSFLPGNSGSFLPGNPAGSRIIPARESRRIPDHSCPGIPQDPGSFLPGNPAGSRIIPALEFRIIPARESRRILDPPSGTFQDPESRFGIFQDPGSSLVNIPEPRIRSWDLRESQIQPWECSRIPDPALGISRIPNPPSGMFQNPGSAAP
SIO_010081: LOC121468232
subclass of: SO_0000673
so part of: LOC121468232
location: complement(join(182368..182475,182507..183130))
location: region:182368-183130:-1
so has part: feature:182507-183130:-1:exon
so has part: feature:182368-182475:-1:exon

XP_041567473.1
type: Protein
SIO_000068: ncbiprotein

position:182368:-1
position: 182368
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:183130:-1
position: 183130
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:182507-183130:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:182368-182475:-1:exon

PDE1B
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: PDE1B
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(183341..194199)
location: region:183341-194199:-1
so has part: feature:183341-194199:-1:exon
subclass of: SO_0000010

100217945
type: Gene
SIO_000068: ncbigene

position:183341:-1
position: 183341
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:194199:-1
position: 194199
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:183341-194199:-1:exon

PDE1B
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: PDE1B
product: phosphodiesterase 1B, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 25 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 83 samples with support for all annotated introns
transcript id: XM_041711535.1
SIO_010081: PDE1B
subclass of: SO_0000673
so part of: PDE1B
location: complement(join(183341..183990,184101..184214,184628..184764,184850..184976,185065..185146,185220..185340,185435..185536,185634..185759,186033..186133,187386..187526,187823..187939,188667..188733,189345..189530,189903..190016,192932..193140))
location: region:183341-193140:-1
so has part: feature:192932-193140:-1:exon
so has part: feature:189903-190016:-1:exon
so has part: feature:189345-189530:-1:exon
so has part: feature:188667-188733:-1:exon
so has part: feature:187823-187939:-1:exon
so has part: feature:187386-187526:-1:exon
so has part: feature:186033-186133:-1:exon
so has part: feature:185634-185759:-1:exon
so has part: feature:185435-185536:-1:exon
so has part: feature:185220-185340:-1:exon
so has part: feature:185065-185146:-1:exon
so has part: feature:184850-184976:-1:exon
so has part: feature:184628-184764:-1:exon
so has part: feature:184101-184214:-1:exon
so has part: feature:183341-183990:-1:exon

position:193140:-1
position: 193140
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:192932-193140:-1:exon

position:192932:-1
position: 192932
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:189903-190016:-1:exon

position:189903:-1
position: 189903
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:190016:-1
position: 190016
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:189345-189530:-1:exon

position:189345:-1
position: 189345
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:189530:-1
position: 189530
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:188667-188733:-1:exon

position:188667:-1
position: 188667
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:188733:-1
position: 188733
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:187823-187939:-1:exon

position:187823:-1
position: 187823
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:187939:-1
position: 187939
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:187386-187526:-1:exon

position:187386:-1
position: 187386
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:187526:-1
position: 187526
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:186033-186133:-1:exon

position:186033:-1
position: 186033
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:186133:-1
position: 186133
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:185634-185759:-1:exon

position:185634:-1
position: 185634
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:185759:-1
position: 185759
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:185435-185536:-1:exon

position:185435:-1
position: 185435
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:185536:-1
position: 185536
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:185220-185340:-1:exon

position:185220:-1
position: 185220
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:185340:-1
position: 185340
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:185065-185146:-1:exon

position:185065:-1
position: 185065
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:185146:-1
position: 185146
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:184850-184976:-1:exon

position:184850:-1
position: 184850
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:184976:-1
position: 184976
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:184628-184764:-1:exon

position:184628:-1
position: 184628
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:184764:-1
position: 184764
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:184101-184214:-1:exon

position:184101:-1
position: 184101
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:184214:-1
position: 184214
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:183341-183990:-1:exon

position:183990:-1
position: 183990
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

PDE1B
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: PDE1B
product: phosphodiesterase 1B, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 25 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 47 samples with support for all annotated introns
transcript id: XM_041711534.1
SIO_010081: PDE1B
subclass of: SO_0000673
so part of: PDE1B
location: complement(join(183342..183987,184101..184214,184628..184764,184850..184976,185065..185146,185220..185340,185435..185536,185634..185759,186033..186133,187386..187526,187823..187939,188667..188733,189345..189530,189903..190016,192932..193067,194132..194187))
location: region:183342-194187:-1
so has part: feature:194132-194187:-1:exon
so has part: feature:192932-193067:-1:exon
so has part: feature:189903-190016:-1:exon
so has part: feature:189345-189530:-1:exon
so has part: feature:188667-188733:-1:exon
so has part: feature:187823-187939:-1:exon
so has part: feature:187386-187526:-1:exon
so has part: feature:186033-186133:-1:exon
so has part: feature:185634-185759:-1:exon
so has part: feature:185435-185536:-1:exon
so has part: feature:185220-185340:-1:exon
so has part: feature:185065-185146:-1:exon
so has part: feature:184850-184976:-1:exon
so has part: feature:184628-184764:-1:exon
so has part: feature:184101-184214:-1:exon
so has part: feature:183342-183987:-1:exon

position:183342:-1
position: 183342
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:194187:-1
position: 194187
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:194132-194187:-1:exon

position:194132:-1
position: 194132
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:192932-193067:-1:exon

position:193067:-1
position: 193067
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:189903-190016:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:189345-189530:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:188667-188733:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:187823-187939:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:187386-187526:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:186033-186133:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:185634-185759:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:185435-185536:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:185220-185340:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:185065-185146:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:184850-184976:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:184628-184764:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:184101-184214:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:183342-183987:-1:exon

position:183987:-1
position: 183987
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

PDE1B
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: PDE1B
product: phosphodiesterase 1B, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 36 samples with support for all annotated introns
transcript id: XM_041711536.1
SIO_010081: PDE1B
subclass of: SO_0000673
so part of: PDE1B
location: complement(join(183343..183987,184101..184214,184628..184764,184850..184976,185065..185146,185220..185340,185435..185536,185634..185759,186033..186133,187386..187526,187823..187939,188667..188733,189345..189526,189903..190016,192932..193067,194132..194199))
location: region:183343-194199:-1
so has part: feature:194132-194199:-1:exon
so has part: feature:192932-193067:-1:exon
so has part: feature:189903-190016:-1:exon
so has part: feature:189345-189526:-1:exon
so has part: feature:188667-188733:-1:exon
so has part: feature:187823-187939:-1:exon
so has part: feature:187386-187526:-1:exon
so has part: feature:186033-186133:-1:exon
so has part: feature:185634-185759:-1:exon
so has part: feature:185435-185536:-1:exon
so has part: feature:185220-185340:-1:exon
so has part: feature:185065-185146:-1:exon
so has part: feature:184850-184976:-1:exon
so has part: feature:184628-184764:-1:exon
so has part: feature:184101-184214:-1:exon
so has part: feature:183343-183987:-1:exon

position:183343:-1
position: 183343
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:194132-194199:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:192932-193067:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:189903-190016:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:189345-189526:-1:exon

position:189526:-1
position: 189526
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:188667-188733:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:187823-187939:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:187386-187526:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:186033-186133:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:185634-185759:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:185435-185536:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:185220-185340:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:185065-185146:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:184850-184976:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:184628-184764:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:184101-184214:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:183343-183987:-1:exon

PDE1B
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: PDE1B
product: phosphodiesterase 1B, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 55 samples with support for all annotated introns
transcript id: XM_041711537.1
SIO_010081: PDE1B
subclass of: SO_0000673
so part of: PDE1B
location: complement(join(183343..183987,184101..184214,184628..184764,184850..184976,185065..185146,185220..185340,185435..185536,185634..185759,186033..186133,187386..187526,187823..187939,188667..188733,189345..189526,189903..190016,192932..193136))
location: region:183343-193136:-1
so has part: feature:192932-193136:-1:exon
so has part: feature:189903-190016:-1:exon
so has part: feature:189345-189526:-1:exon
so has part: feature:188667-188733:-1:exon
so has part: feature:187823-187939:-1:exon
so has part: feature:187386-187526:-1:exon
so has part: feature:186033-186133:-1:exon
so has part: feature:185634-185759:-1:exon
so has part: feature:185435-185536:-1:exon
so has part: feature:185220-185340:-1:exon
so has part: feature:185065-185146:-1:exon
so has part: feature:184850-184976:-1:exon
so has part: feature:184628-184764:-1:exon
so has part: feature:184101-184214:-1:exon
so has part: feature:183343-183987:-1:exon

position:193136:-1
position: 193136
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:192932-193136:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:189903-190016:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:189345-189526:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:188667-188733:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:187823-187939:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:187386-187526:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:186033-186133:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:185634-185759:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:185435-185536:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:185220-185340:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:185065-185146:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:184850-184976:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:184628-184764:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:184101-184214:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:183343-183987:-1:exon

PDE1B
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: PDE1B
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1B isoform X1
translation: MEPPRSLPGLERERGALDAAGGCPSPLDPRALPGRKVWVKLRALLRYLLKQLESGEVNVEELRRNLECAASLLEAVCIDETRQALDSEDELREMGSDAAVPSEVRDWLAATFTQQARAKGRRAEEKPKFRSIVHAVQAGIFVERMFRRTYTAVGPSYSSSVLNCLKGLDQWCFDVFSLHRAAEEHSLRTVVFELFTRHNLNSRFKIPGAFLTALLEALEGGYGKFRNPYHNQVHAADVTQTVHCVLLRTGMLHCLSEIELLAIVFAAAIHDFEHTGTTNSFHIQTKSDTAILYNDRSVLENHHISAVFRLMQDEELNIFVNLTKDEFAELRALVIEMVLATDMSCHFQQVKSMKTALQQLERLDKSKVLSLLLHAADISHPTKQWAVHSRWTKALMEEFFRQGDKEAELGLPFSPLCDRTSTLVAQSQIGFIDFIVEPTFSVLTDVAEKLVTPLAEDGSKAKGNPTATQQPSSQWRQPSLDEHLELGDIKADLAGFRSTWTKHIQENKQKWKERAASGITNQASIDELSPSPGEEPAATGPHSENGDVE
SIO_010081: PDE1B
subclass of: SO_0000673
so part of: PDE1B
location: complement(join(184117..184214,184628..184764,184850..184976,185065..185146,185220..185340,185435..185536,185634..185759,186033..186133,187386..187526,187823..187939,188667..188733,189345..189530,189903..190016,192932..193062))
location: region:184117-193062:-1
so has part: feature:192932-193062:-1:exon
so has part: feature:189903-190016:-1:exon
so has part: feature:189345-189530:-1:exon
so has part: feature:188667-188733:-1:exon
so has part: feature:187823-187939:-1:exon
so has part: feature:187386-187526:-1:exon
so has part: feature:186033-186133:-1:exon
so has part: feature:185634-185759:-1:exon
so has part: feature:185435-185536:-1:exon
so has part: feature:185220-185340:-1:exon
so has part: feature:185065-185146:-1:exon
so has part: feature:184850-184976:-1:exon
so has part: feature:184628-184764:-1:exon
so has part: feature:184117-184214:-1:exon

XP_041567468.1
type: Protein
SIO_000068: ncbiprotein

position:184117:-1
position: 184117
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:193062:-1
position: 193062
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:192932-193062:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:189903-190016:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:189345-189530:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:188667-188733:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:187823-187939:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:187386-187526:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:186033-186133:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:185634-185759:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:185435-185536:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:185220-185340:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:185065-185146:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:184850-184976:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:184628-184764:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:184117-184214:-1:exon

PDE1B
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: PDE1B
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1B isoform X1
translation: MEPPRSLPGLERERGALDAAGGCPSPLDPRALPGRKVWVKLRALLRYLLKQLESGEVNVEELRRNLECAASLLEAVCIDETRQALDSEDELREMGSDAAVPSEVRDWLAATFTQQARAKGRRAEEKPKFRSIVHAVQAGIFVERMFRRTYTAVGPSYSSSVLNCLKGLDQWCFDVFSLHRAAEEHSLRTVVFELFTRHNLNSRFKIPGAFLTALLEALEGGYGKFRNPYHNQVHAADVTQTVHCVLLRTGMLHCLSEIELLAIVFAAAIHDFEHTGTTNSFHIQTKSDTAILYNDRSVLENHHISAVFRLMQDEELNIFVNLTKDEFAELRALVIEMVLATDMSCHFQQVKSMKTALQQLERLDKSKVLSLLLHAADISHPTKQWAVHSRWTKALMEEFFRQGDKEAELGLPFSPLCDRTSTLVAQSQIGFIDFIVEPTFSVLTDVAEKLVTPLAEDGSKAKGNPTATQQPSSQWRQPSLDEHLELGDIKADLAGFRSTWTKHIQENKQKWKERAASGITNQASIDELSPSPGEEPAATGPHSENGDVE
SIO_010081: PDE1B
subclass of: SO_0000673
so part of: PDE1B
location: complement(join(184117..184214,184628..184764,184850..184976,185065..185146,185220..185340,185435..185536,185634..185759,186033..186133,187386..187526,187823..187939,188667..188733,189345..189530,189903..190016,192932..193062))
location: region:184117-193062:-1
so has part: feature:192932-193062:-1:exon
so has part: feature:189903-190016:-1:exon
so has part: feature:189345-189530:-1:exon
so has part: feature:188667-188733:-1:exon
so has part: feature:187823-187939:-1:exon
so has part: feature:187386-187526:-1:exon
so has part: feature:186033-186133:-1:exon
so has part: feature:185634-185759:-1:exon
so has part: feature:185435-185536:-1:exon
so has part: feature:185220-185340:-1:exon
so has part: feature:185065-185146:-1:exon
so has part: feature:184850-184976:-1:exon
so has part: feature:184628-184764:-1:exon
so has part: feature:184117-184214:-1:exon

XP_041567469.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:192932-193062:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:189903-190016:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:189345-189530:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:188667-188733:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:187823-187939:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:187386-187526:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:186033-186133:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:185634-185759:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:185435-185536:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:185220-185340:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:185065-185146:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:184850-184976:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:184628-184764:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:184117-184214:-1:exon

PDE1B
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: PDE1B
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1B isoform X2
translation: MGSDAAVPSEVRDWLAATFTQQARAKGRRAEEKPKFRSIVHAVQAGIFVERMFRRTYTAVGPSYSSSVLNCLKGLDQWCFDVFSLHRAAEEHSLRTVVFELFTRHNLNSRFKIPGAFLTALLEALEGGYGKFRNPYHNQVHAADVTQTVHCVLLRTGMLHCLSEIELLAIVFAAAIHDFEHTGTTNSFHIQTKSDTAILYNDRSVLENHHISAVFRLMQDEELNIFVNLTKDEFAELRALVIEMVLATDMSCHFQQVKSMKTALQQLERLDKSKVLSLLLHAADISHPTKQWAVHSRWTKALMEEFFRQGDKEAELGLPFSPLCDRTSTLVAQSQIGFIDFIVEPTFSVLTDVAEKLVTPLAEDGSKAKGNPTATQQPSSQWRQPSLDEHLELGDIKADLAGFRSTWTKHIQENKQKWKERAASGITNQASIDELSPSPGEEPAATGPHSENGDVE
SIO_010081: PDE1B
subclass of: SO_0000673
so part of: PDE1B
location: complement(join(184117..184214,184628..184764,184850..184976,185065..185146,185220..185340,185435..185536,185634..185759,186033..186133,187386..187526,187823..187939,188667..188733,189345..189496))
location: region:184117-189496:-1
so has part: feature:189345-189496:-1:exon
so has part: feature:188667-188733:-1:exon
so has part: feature:187823-187939:-1:exon
so has part: feature:187386-187526:-1:exon
so has part: feature:186033-186133:-1:exon
so has part: feature:185634-185759:-1:exon
so has part: feature:185435-185536:-1:exon
so has part: feature:185220-185340:-1:exon
so has part: feature:185065-185146:-1:exon
so has part: feature:184850-184976:-1:exon
so has part: feature:184628-184764:-1:exon
so has part: feature:184117-184214:-1:exon

XP_041567470.1
type: Protein
SIO_000068: ncbiprotein

position:189496:-1
position: 189496
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:189345-189496:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:188667-188733:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:187823-187939:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:187386-187526:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:186033-186133:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:185634-185759:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:185435-185536:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:185220-185340:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:185065-185146:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:184850-184976:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:184628-184764:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:184117-184214:-1:exon

PDE1B
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: PDE1B
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1B isoform X2
translation: MGSDAAVPSEVRDWLAATFTQQARAKGRRAEEKPKFRSIVHAVQAGIFVERMFRRTYTAVGPSYSSSVLNCLKGLDQWCFDVFSLHRAAEEHSLRTVVFELFTRHNLNSRFKIPGAFLTALLEALEGGYGKFRNPYHNQVHAADVTQTVHCVLLRTGMLHCLSEIELLAIVFAAAIHDFEHTGTTNSFHIQTKSDTAILYNDRSVLENHHISAVFRLMQDEELNIFVNLTKDEFAELRALVIEMVLATDMSCHFQQVKSMKTALQQLERLDKSKVLSLLLHAADISHPTKQWAVHSRWTKALMEEFFRQGDKEAELGLPFSPLCDRTSTLVAQSQIGFIDFIVEPTFSVLTDVAEKLVTPLAEDGSKAKGNPTATQQPSSQWRQPSLDEHLELGDIKADLAGFRSTWTKHIQENKQKWKERAASGITNQASIDELSPSPGEEPAATGPHSENGDVE
SIO_010081: PDE1B
subclass of: SO_0000673
so part of: PDE1B
location: complement(join(184117..184214,184628..184764,184850..184976,185065..185146,185220..185340,185435..185536,185634..185759,186033..186133,187386..187526,187823..187939,188667..188733,189345..189496))
location: region:184117-189496:-1
so has part: feature:189345-189496:-1:exon
so has part: feature:188667-188733:-1:exon
so has part: feature:187823-187939:-1:exon
so has part: feature:187386-187526:-1:exon
so has part: feature:186033-186133:-1:exon
so has part: feature:185634-185759:-1:exon
so has part: feature:185435-185536:-1:exon
so has part: feature:185220-185340:-1:exon
so has part: feature:185065-185146:-1:exon
so has part: feature:184850-184976:-1:exon
so has part: feature:184628-184764:-1:exon
so has part: feature:184117-184214:-1:exon

XP_041567471.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:189345-189496:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:188667-188733:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:187823-187939:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:187386-187526:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:186033-186133:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:185634-185759:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:185435-185536:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:185220-185340:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:185065-185146:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:184850-184976:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:184628-184764:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:184117-184214:-1:exon

NCKAP1L
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: NCKAP1L
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(197631..202108)
location: region:197631-202108:-1
so has part: feature:197631-202108:-1:exon
subclass of: SO_0000010

121468231
type: Gene
SIO_000068: ncbigene

position:197631:-1
position: 197631
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:202108:-1
position: 202108
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:197631-202108:-1:exon

NCKAP1L
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: NCKAP1L
product: NCK associated protein 1 like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 37 samples with support for all annotated introns
transcript id: XM_041711538.1
SIO_010081: NCKAP1L
subclass of: SO_0000673
so part of: NCKAP1L
location: complement(join(197631..197815,198335..198424,199094..199203,200772..200888,200969..201053,201149..201229,201354..201436,201558..201645,201983..202108))
location: region:197631-202108:-1
so has part: feature:201983-202108:-1:exon
so has part: feature:201558-201645:-1:exon
so has part: feature:201354-201436:-1:exon
so has part: feature:201149-201229:-1:exon
so has part: feature:200969-201053:-1:exon
so has part: feature:200772-200888:-1:exon
so has part: feature:199094-199203:-1:exon
so has part: feature:198335-198424:-1:exon
so has part: feature:197631-197815:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:201983-202108:-1:exon

position:201983:-1
position: 201983
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:201558-201645:-1:exon

position:201558:-1
position: 201558
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:201645:-1
position: 201645
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:201354-201436:-1:exon

position:201354:-1
position: 201354
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:201436:-1
position: 201436
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:201149-201229:-1:exon

position:201149:-1
position: 201149
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:201229:-1
position: 201229
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:200969-201053:-1:exon

position:200969:-1
position: 200969
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:201053:-1
position: 201053
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:200772-200888:-1:exon

position:200772:-1
position: 200772
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:200888:-1
position: 200888
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:199094-199203:-1:exon

position:199094:-1
position: 199094
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:199203:-1
position: 199203
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:198335-198424:-1:exon

position:198335:-1
position: 198335
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:198424:-1
position: 198424
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:197631-197815:-1:exon

position:197815:-1
position: 197815
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

NCKAP1L
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: NCKAP1L
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: nck-associated protein 1-like
translation: MRFLSENLMWHVGSQVTELKKLVAENMDTLVQLRCCRPEQRPALLPRLSSAENVLKRMTIIGEILSFRAMAQQGLREVFSQHCPFLTGPIECLAELVTPDTDIQVTLSIFELASAAGVPCEVDPALVAALRTEGSSPEEEYKVSCLLLVFVAVSLPLLAADPASLYSPELDGHLNNVHCLAKAIAQLSAALFTVHGKNIETHLKEFLLLASSSLLQLAQEPDKARARNQDSIALLLQLIVAESSFLTLDMLESCFPYVLLRNAFRQLCREPPGRAPPH
SIO_010081: NCKAP1L
subclass of: SO_0000673
so part of: NCKAP1L
location: complement(join(197693..197815,198335..198424,199094..199203,200772..200888,200969..201053,201149..201229,201354..201436,201558..201645,201983..202042))
location: region:197693-202042:-1
so has part: feature:201983-202042:-1:exon
so has part: feature:201558-201645:-1:exon
so has part: feature:201354-201436:-1:exon
so has part: feature:201149-201229:-1:exon
so has part: feature:200969-201053:-1:exon
so has part: feature:200772-200888:-1:exon
so has part: feature:199094-199203:-1:exon
so has part: feature:198335-198424:-1:exon
so has part: feature:197693-197815:-1:exon

XP_041567472.1
type: Protein
SIO_000068: ncbiprotein

position:197693:-1
position: 197693
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:202042:-1
position: 202042
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:201983-202042:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:201558-201645:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:201354-201436:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:201149-201229:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:200969-201053:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:200772-200888:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:199094-199203:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:198335-198424:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:197693-197815:-1:exon

ITGA5
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: ITGA5
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: <202331..213956
location: region:202331-213956:1
so has part: feature:202331-213956:1:exon
subclass of: SO_0000010

115491489
type: Gene
SIO_000068: ncbigene

position:202331:1
position: 202331
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:213956:1
position: 213956
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:202331-213956:1:exon

ITGA5
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: ITGA5
product: integrin subunit alpha 5
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_041711486.1
SIO_010081: ITGA5
subclass of: SO_0000673
so part of: ITGA5
location: join(<202331..202361,202674..202865,203451..203496,203694..203798,204314..204369,204630..204799,205455..205592,205891..205958,206261..206411,206919..207011,207444..207523,207642..207722,208726..208828,209605..209757,210340..210417,210511..210624,211311..211412,211854..211923,212113..212282,212673..213956)
location: region:202331-213956:1
so has part: feature:202331-202361:1:exon
so has part: feature:202674-202865:1:exon
so has part: feature:203451-203496:1:exon
so has part: feature:203694-203798:1:exon
so has part: feature:204314-204369:1:exon
so has part: feature:204630-204799:1:exon
so has part: feature:205455-205592:1:exon
so has part: feature:205891-205958:1:exon
so has part: feature:206261-206411:1:exon
so has part: feature:206919-207011:1:exon
so has part: feature:207444-207523:1:exon
so has part: feature:207642-207722:1:exon
so has part: feature:208726-208828:1:exon
so has part: feature:209605-209757:1:exon
so has part: feature:210340-210417:1:exon
so has part: feature:210511-210624:1:exon
so has part: feature:211311-211412:1:exon
so has part: feature:211854-211923:1:exon
so has part: feature:212113-212282:1:exon
so has part: feature:212673-213956:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:202331-202361:1:exon

position:202361:1
position: 202361
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:202674-202865:1:exon

position:202674:1
position: 202674
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:202865:1
position: 202865
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:203451-203496:1:exon

position:203451:1
position: 203451
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:203496:1
position: 203496
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:203694-203798:1:exon

position:203694:1
position: 203694
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:203798:1
position: 203798
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:204314-204369:1:exon

position:204314:1
position: 204314
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:204369:1
position: 204369
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:204630-204799:1:exon

position:204630:1
position: 204630
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:204799:1
position: 204799
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:205455-205592:1:exon

position:205455:1
position: 205455
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:205592:1
position: 205592
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:205891-205958:1:exon

position:205891:1
position: 205891
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:205958:1
position: 205958
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:206261-206411:1:exon

position:206261:1
position: 206261
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:206411:1
position: 206411
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:206919-207011:1:exon

position:206919:1
position: 206919
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:207011:1
position: 207011
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:207444-207523:1:exon

position:207444:1
position: 207444
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:207523:1
position: 207523
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:207642-207722:1:exon

position:207642:1
position: 207642
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:207722:1
position: 207722
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:208726-208828:1:exon

position:208726:1
position: 208726
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:208828:1
position: 208828
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:209605-209757:1:exon

position:209605:1
position: 209605
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:209757:1
position: 209757
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:210340-210417:1:exon

position:210340:1
position: 210340
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:210417:1
position: 210417
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:210511-210624:1:exon

position:210511:1
position: 210511
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:210624:1
position: 210624
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:211311-211412:1:exon

position:211311:1
position: 211311
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:211412:1
position: 211412
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:211854-211923:1:exon

position:211854:1
position: 211854
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:211923:1
position: 211923
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:212113-212282:1:exon

position:212113:1
position: 212113
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:212282:1
position: 212282
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:212673-213956:1:exon

position:212673:1
position: 212673
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ITGA5
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: ITGA5
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: integrin alpha-5
translation: GYQGYRDGYNDVAVGAPLGAEGRRGLVFIFRGGGAGLRARPAQLLRGVGAPRGQPDFFGAALRGASDLDGNGYPDLLVGAFGADAVVVYRGRPIVQASATLVIVPTMFNPEERGCVLPGGQHVSCINVTFCLNASGRHLPGPIGLALELSVDGAKAGGARRALFLGGGAGGAPPSPTRNLSLEVPNGGAPRCRTLPVFLRNESEFRDKLSPIPVSLSLALDPAVSPPPPGLSPLLAPATRTRLEAKAHIQLDCGEDNVCVPDLQLEASADRRAVYLGDRNSLNVTFVARNVGEGGAYEAELLLRPPPGALYSGVLRPHGNFSALSCELGGGNGSDPLICDLGNPMKAGASIRGGLRFTLPHLSDSSGSVTFELQIRSKNANNSQSPVVAVALAVRAATRVSVLGVSRPDVVTVPEGGWGPDPPQRLQDLGPPVEHVYEVVNEGPSAISQGTLELSCPLGHRGHPLLYVTGHSGLHNCSASHGSDPLRLAEREQSPGPHVLQRRDIGDIGDSGDTLGCPEAECFRLSCPSGGLERQQRVTLRLSFRLRTPPLRQPQLWPLSLRCDAEFRVLRLPYRLRPEGYPRHRLQVVTALSRARPEAGAGVPVWAVAQDRVAQGDTVGVPVPAQVVTALSRARPEAGAGVPVWAVVLAVLLGLLLLGLLCYGLYKLGFFKRSGPYGTAMEKAQLKPQAASEA
SIO_010081: ITGA5
subclass of: SO_0000673
so part of: ITGA5
location: join(<202331..202361,202674..202865,203451..203496,203694..203798,204314..204369,204630..204799,205455..205592,205891..205958,206261..206411,206919..207011,207444..207523,207642..207722,208726..208828,209605..209757,210340..210417,210511..210624,211311..211412,211854..211923,212113..212282,212673..212756)
location: region:202331-212756:1
so has part: feature:202331-202361:1:exon
so has part: feature:202674-202865:1:exon
so has part: feature:203451-203496:1:exon
so has part: feature:203694-203798:1:exon
so has part: feature:204314-204369:1:exon
so has part: feature:204630-204799:1:exon
so has part: feature:205455-205592:1:exon
so has part: feature:205891-205958:1:exon
so has part: feature:206261-206411:1:exon
so has part: feature:206919-207011:1:exon
so has part: feature:207444-207523:1:exon
so has part: feature:207642-207722:1:exon
so has part: feature:208726-208828:1:exon
so has part: feature:209605-209757:1:exon
so has part: feature:210340-210417:1:exon
so has part: feature:210511-210624:1:exon
so has part: feature:211311-211412:1:exon
so has part: feature:211854-211923:1:exon
so has part: feature:212113-212282:1:exon
so has part: feature:212673-212756:1:exon

XP_041567420.1
type: Protein
SIO_000068: ncbiprotein

position:212756:1
position: 212756
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:202331-202361:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:202674-202865:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:203451-203496:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:203694-203798:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:204314-204369:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:204630-204799:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:205455-205592:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:205891-205958:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:206261-206411:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:206919-207011:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:207444-207523:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:207642-207722:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:208726-208828:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:209605-209757:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:210340-210417:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:210511-210624:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:211311-211412:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:211854-211923:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:212113-212282:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:212673-212756:1:exon

ZNF385A
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: ZNF385A
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 217943..225183
location: region:217943-225183:1
so has part: feature:217943-225183:1:exon
subclass of: SO_0000010

115491475
type: Gene
SIO_000068: ncbigene

position:217943:1
position: 217943
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:225183:1
position: 225183
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:217943-225183:1:exon

ZNF385A
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: ZNF385A
product: zinc finger protein 385A
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 3 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 95% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_041711487.1
SIO_010081: ZNF385A
subclass of: SO_0000673
so part of: ZNF385A
location: join(217943..218083,219554..219649,220290..220443,220846..221019,221559..221725,222451..222543,223357..225183)
location: region:217943-225183:1
so has part: feature:217943-218083:1:exon
so has part: feature:219554-219649:1:exon
so has part: feature:220290-220443:1:exon
so has part: feature:220846-221019:1:exon
so has part: feature:221559-221725:1:exon
so has part: feature:222451-222543:1:exon
so has part: feature:223357-225183:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:217943-218083:1:exon

position:218083:1
position: 218083
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:219554-219649:1:exon

position:219554:1
position: 219554
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:219649:1
position: 219649
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:220290-220443:1:exon

position:220290:1
position: 220290
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:220443:1
position: 220443
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:220846-221019:1:exon

position:220846:1
position: 220846
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:221019:1
position: 221019
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:221559-221725:1:exon

position:221559:1
position: 221559
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:221725:1
position: 221725
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:222451-222543:1:exon

position:222451:1
position: 222451
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:222543:1
position: 222543
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:223357-225183:1:exon

position:223357:1
position: 223357
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ZNF385A
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: ZNF385A
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 3 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: zinc finger protein 385A
translation: MLRAPGPLGPPPGRLLLPDAAAAAAAAAAALRLLPPLPAMEPLPKGALGALTKPRRPVIACSVCQIRFNSESQAAAHYQGNRHARRLKGLEAARSRHGGDPGDPPEPPPTAAPPAGDPPERAAPAPAAPGAPGPPSPPAPPRPEEEEEEEEERAKAKRLLYCGLCKVAVNSLSQLEAHNRGTKHKTLLEARSGLGPIRAFPRGGGGAGPPPAEGPERCFHCRVCNVRLNSELQLKQHISSRRHRDGVAGKPNPLLGRHKKPRSPPELAPLPFPKELPKALAGGGLLPPPLALAAAAAAAIAAPLALRPPGPPGPPGPPGPPLLPGPPLAPALLRPAPGPLRPAHAPLLFSPY
SIO_010081: ZNF385A
subclass of: SO_0000673
so part of: ZNF385A
location: join(217967..218083,219554..219649,220290..220443,220846..221019,221559..221725,222451..222543,223357..223617)
location: region:217967-223617:1
so has part: feature:217967-218083:1:exon
so has part: feature:219554-219649:1:exon
so has part: feature:220290-220443:1:exon
so has part: feature:220846-221019:1:exon
so has part: feature:221559-221725:1:exon
so has part: feature:222451-222543:1:exon
so has part: feature:223357-223617:1:exon

XP_041567421.1
type: Protein
SIO_000068: ncbiprotein

position:217967:1
position: 217967
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:223617:1
position: 223617
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:217967-218083:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:219554-219649:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:220290-220443:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:220846-221019:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:221559-221725:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:222451-222543:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:223357-223617:1:exon

COPZ1
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: COPZ1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(226962..232150)
location: region:226962-232150:-1
so has part: feature:226962-232150:-1:exon
subclass of: SO_0000010

115491464
type: Gene
SIO_000068: ncbigene

position:226962:-1
position: 226962
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:232150:-1
position: 232150
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:226962-232150:-1:exon

COPZ1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: COPZ1
product: COPI coat complex subunit zeta 1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, 22 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 111 samples with support for all annotated introns
transcript id: XM_041711551.1
SIO_010081: COPZ1
subclass of: SO_0000673
so part of: COPZ1
location: complement(join(226962..227019,227885..227923,228418..228469,228759..228836,228993..229048,229291..229382,230244..230325,230858..230926,232051..232150))
location: region:226962-232150:-1
so has part: feature:232051-232150:-1:exon
so has part: feature:230858-230926:-1:exon
so has part: feature:230244-230325:-1:exon
so has part: feature:229291-229382:-1:exon
so has part: feature:228993-229048:-1:exon
so has part: feature:228759-228836:-1:exon
so has part: feature:228418-228469:-1:exon
so has part: feature:227885-227923:-1:exon
so has part: feature:226962-227019:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:232051-232150:-1:exon

position:232051:-1
position: 232051
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:230858-230926:-1:exon

position:230858:-1
position: 230858
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:230926:-1
position: 230926
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:230244-230325:-1:exon

position:230244:-1
position: 230244
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:230325:-1
position: 230325
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:229291-229382:-1:exon

position:229291:-1
position: 229291
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:229382:-1
position: 229382
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:228993-229048:-1:exon

position:228993:-1
position: 228993
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:229048:-1
position: 229048
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:228759-228836:-1:exon

position:228759:-1
position: 228759
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:228836:-1
position: 228836
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:228418-228469:-1:exon

position:228418:-1
position: 228418
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:228469:-1
position: 228469
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:227885-227923:-1:exon

position:227885:-1
position: 227885
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:227923:-1
position: 227923
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:226962-227019:-1:exon

position:227019:-1
position: 227019
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

COPZ1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: COPZ1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: coatomer subunit zeta-1
translation: MEALVLEPSLYTVKAIIILDNDGERLFAKYYDDTYPSVKEQRAFEKNIFSKTHRSDSEIALLDGLTVVYKSSIDLYCCVIGSATQNELMLTAVLNCLFDSLSQMLRKNVERRALLDNMEGLFLAVDEIVDGGVILESDPQQVVHRVAVRGEDVPLTEQTVSQVLQAAKEQIKWSLLR
SIO_010081: COPZ1
subclass of: SO_0000673
so part of: COPZ1
location: complement(join(226972..227019,227885..227923,228418..228469,228759..228836,228993..229048,229291..229382,230244..230325,230858..230926,232051..232068))
location: region:226972-232068:-1
so has part: feature:232051-232068:-1:exon
so has part: feature:230858-230926:-1:exon
so has part: feature:230244-230325:-1:exon
so has part: feature:229291-229382:-1:exon
so has part: feature:228993-229048:-1:exon
so has part: feature:228759-228836:-1:exon
so has part: feature:228418-228469:-1:exon
so has part: feature:227885-227923:-1:exon
so has part: feature:226972-227019:-1:exon

XP_041567485.1
type: Protein
SIO_000068: ncbiprotein

position:226972:-1
position: 226972
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:232068:-1
position: 232068
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:232051-232068:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:230858-230926:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:230244-230325:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:229291-229382:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:228993-229048:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:228759-228836:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:228418-228469:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:227885-227923:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:226972-227019:-1:exon

HNRNPA1
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: HNRNPA1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(232729..243013)
location: region:232729-243013:-1
so has part: feature:232729-243013:-1:exon
subclass of: SO_0000010

115491350
type: Gene
SIO_000068: ncbigene

position:232729:-1
position: 232729
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:243013:-1
position: 243013
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:232729-243013:-1:exon

HNRNPA1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: HNRNPA1
product: heterogeneous nuclear ribonucleoprotein A1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 ESTs, 20 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 95 samples with support for all annotated introns
transcript id: XM_041711549.1
SIO_010081: HNRNPA1
subclass of: SO_0000673
so part of: HNRNPA1
location: complement(join(232729..233007,234441..234503,235756..235878,237277..237453,238262..238360,238489..238581,239170..239380,240079..240225,241113..241229,242906..243013))
location: region:232729-243013:-1
so has part: feature:242906-243013:-1:exon
so has part: feature:241113-241229:-1:exon
so has part: feature:240079-240225:-1:exon
so has part: feature:239170-239380:-1:exon
so has part: feature:238489-238581:-1:exon
so has part: feature:238262-238360:-1:exon
so has part: feature:237277-237453:-1:exon
so has part: feature:235756-235878:-1:exon
so has part: feature:234441-234503:-1:exon
so has part: feature:232729-233007:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:242906-243013:-1:exon

position:242906:-1
position: 242906
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:241113-241229:-1:exon

position:241113:-1
position: 241113
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:241229:-1
position: 241229
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:240079-240225:-1:exon

position:240079:-1
position: 240079
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:240225:-1
position: 240225
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:239170-239380:-1:exon

position:239170:-1
position: 239170
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:239380:-1
position: 239380
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:238489-238581:-1:exon

position:238489:-1
position: 238489
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:238581:-1
position: 238581
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:238262-238360:-1:exon

position:238262:-1
position: 238262
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:238360:-1
position: 238360
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:237277-237453:-1:exon

position:237277:-1
position: 237277
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:237453:-1
position: 237453
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:235756-235878:-1:exon

position:235756:-1
position: 235756
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:235878:-1
position: 235878
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:234441-234503:-1:exon

position:234441:-1
position: 234441
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:234503:-1
position: 234503
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:232729-233007:-1:exon

position:233007:-1
position: 233007
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

HNRNPA1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: HNRNPA1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: heterogeneous nuclear ribonucleoprotein A1
translation: MAKAESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYSSVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLREYFGQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASAGQRGRSGSGNFGGGGGRGGGFGGGDNFNRGGNFGGRGYGGGGGPGYSGGNRGYGGSGSYDGYNNGGGGFGGGSGGRRPARGPALAVRNGLGEAGTGSNFGGGGSYNDFGSYNNQASSFGPMKGGSFGGRSSGPYGGGGYGSSSGGGSYGGGRRF
SIO_010081: HNRNPA1
subclass of: SO_0000673
so part of: HNRNPA1
location: complement(join(234448..234503,235756..235878,237277..237453,238262..238360,238489..238581,239170..239380,240079..240225,241113..241229,242906..242920))
location: region:234448-242920:-1
so has part: feature:242906-242920:-1:exon
so has part: feature:241113-241229:-1:exon
so has part: feature:240079-240225:-1:exon
so has part: feature:239170-239380:-1:exon
so has part: feature:238489-238581:-1:exon
so has part: feature:238262-238360:-1:exon
so has part: feature:237277-237453:-1:exon
so has part: feature:235756-235878:-1:exon
so has part: feature:234448-234503:-1:exon

XP_041567483.1
type: Protein
SIO_000068: ncbiprotein

position:234448:-1
position: 234448
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:242920:-1
position: 242920
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:242906-242920:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:241113-241229:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:240079-240225:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:239170-239380:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:238489-238581:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:238262-238360:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:237277-237453:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:235756-235878:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:234448-234503:-1:exon

CBX5
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: CBX5
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 243361..248511
location: region:243361-248511:1
so has part: feature:243361-248511:1:exon
subclass of: SO_0000010

115491477
type: Gene
SIO_000068: ncbigene

position:243361:1
position: 243361
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:248511:1
position: 248511
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:243361-248511:1:exon

CBX5
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: CBX5
product: chromobox 5, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 28 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 18 samples with support for all annotated introns
transcript id: XM_032745120.2
SIO_010081: CBX5
subclass of: SO_0000673
so part of: CBX5
location: join(243361..243463,245914..246065,246596..246785,247361..247458,248311..248511)
location: region:243361-248511:1
so has part: feature:243361-243463:1:exon
so has part: feature:245914-246065:1:exon
so has part: feature:246596-246785:1:exon
so has part: feature:247361-247458:1:exon
so has part: feature:248311-248511:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:243361-243463:1:exon

position:243463:1
position: 243463
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:245914-246065:1:exon

position:245914:1
position: 245914
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:246065:1
position: 246065
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:246596-246785:1:exon

position:246596:1
position: 246596
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:246785:1
position: 246785
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:247361-247458:1:exon

position:247361:1
position: 247361
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:247458:1
position: 247458
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:248311-248511:1:exon

position:248311:1
position: 248311
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

CBX5
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: CBX5
product: chromobox 5, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 28 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 17 samples with support for all annotated introns
transcript id: XM_032745119.2
SIO_010081: CBX5
subclass of: SO_0000673
so part of: CBX5
location: join(243587..243666,245914..246065,246596..246785,247361..247458,248311..248511)
location: region:243587-248511:1
so has part: feature:243587-243666:1:exon
so has part: feature:245914-246065:1:exon
so has part: feature:246596-246785:1:exon
so has part: feature:247361-247458:1:exon
so has part: feature:248311-248511:1:exon

position:243587:1
position: 243587
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:243587-243666:1:exon

position:243666:1
position: 243666
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:245914-246065:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:246596-246785:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:247361-247458:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:248311-248511:1:exon

CBX5
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: CBX5
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: chromobox protein homolog 5
translation: MGRRSRRAADSSSSGEEEEYVVEKVLDRRVVRGQAEYLLKWKGFSEEHNTWEPEKNLDCPELISQFLRKDRRMRDMRDSEGTRPRERPEGAKRKGLPGGEDGRAKKKRESNDIARGFERGLEPEKIIGATDSCGDLMFLMKWKDTDEADLVLAKEANLRCPQIVIAFYEERLTWHAYPEDSEPKERDPPRS
SIO_010081: CBX5
subclass of: SO_0000673
so part of: CBX5
location: join(245929..246065,246596..246785,247361..247458,248311..248461)
location: region:245929-248461:1
so has part: feature:245929-246065:1:exon
so has part: feature:246596-246785:1:exon
so has part: feature:247361-247458:1:exon
so has part: feature:248311-248461:1:exon

XP_032601010.1
type: Protein
SIO_000068: ncbiprotein

position:245929:1
position: 245929
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:248461:1
position: 248461
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:245929-246065:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:246596-246785:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:247361-247458:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:248311-248461:1:exon

CBX5
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: CBX5
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: chromobox protein homolog 5
translation: MGRRSRRAADSSSSGEEEEYVVEKVLDRRVVRGQAEYLLKWKGFSEEHNTWEPEKNLDCPELISQFLRKDRRMRDMRDSEGTRPRERPEGAKRKGLPGGEDGRAKKKRESNDIARGFERGLEPEKIIGATDSCGDLMFLMKWKDTDEADLVLAKEANLRCPQIVIAFYEERLTWHAYPEDSEPKERDPPRS
SIO_010081: CBX5
subclass of: SO_0000673
so part of: CBX5
location: join(245929..246065,246596..246785,247361..247458,248311..248461)
location: region:245929-248461:1
so has part: feature:245929-246065:1:exon
so has part: feature:246596-246785:1:exon
so has part: feature:247361-247458:1:exon
so has part: feature:248311-248461:1:exon

XP_032601011.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:245929-246065:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:246596-246785:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:247361-247458:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:248311-248461:1:exon

SMUG1
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: SMUG1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 251442..254427
location: region:251442-254427:1
so has part: feature:251442-254427:1:exon
subclass of: SO_0000010

115491507
type: Gene
SIO_000068: ncbigene

position:251442:1
position: 251442
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:254427:1
position: 254427
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:251442-254427:1:exon

SMUG1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: SMUG1
product: single-strand-selective monofunctional uracil-DNA glycosylase 1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 113 samples with support for all annotated introns
transcript id: XM_032745123.2
SIO_010081: SMUG1
subclass of: SO_0000673
so part of: SMUG1
location: join(251442..251942,253023..254427)
location: region:251442-254427:1
so has part: feature:251442-251942:1:exon
so has part: feature:253023-254427:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:251442-251942:1:exon

position:251942:1
position: 251942
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:253023-254427:1:exon

position:253023:1
position: 253023
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

SMUG1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: SMUG1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: single-strand selective monofunctional uracil DNA glycosylase
translation: MERKEEEEEEEEEGARSEEEEEEGGGTGTGAGAGAEEDEDAAGDEADDDEDNEEADEDDDEDDEADDDEDDEGDGGEAEGVAARFLALQRALSERLRALPPPGPPVAAVYAPLEYAWEPHRSFVRRFLRRRPAVLFLGMNPGPFGMAQTGVPFGEAWHVREWLRVSGAVRRPPGEHPKRPVLGLRCPRAEVSGARFWGLVRSLCPDPRSFFRHCFVHNLCPLLFLAASGRNVAPPELRAAERERLLGPCSAALAAAVAALGVRLVVAVGRVAELRARRALRDAGLPVPVAWIPHPSPRNPRANRGWESEARARLAELGVLRLLGGRLGGPLPPLACSGAEGEELGGSLPRLTCSETEGKESGGPLPPLTCSGAEGNELGGSLPRSTCSGAEGKRVGGSLPQFPRSETEGKGGGGSLPQLPRLGSKRKKVRGSLPQFPRSEMEGNEPGGSLPQFPCSETEGKEVGRSLPQFPHSGAEGKEFGGFLPQFPRSGTKRKKVRGSLPQFPCSGAEGRELGGSLPQFEQFGTGGRRTDGSLPQFPHSEQDLGRHYRAEGQSLPQFPHSGGGLGLL
SIO_010081: SMUG1
subclass of: SO_0000673
so part of: SMUG1
location: join(251493..251942,253023..254282)
location: region:251493-254282:1
so has part: feature:251493-251942:1:exon
so has part: feature:253023-254282:1:exon

XP_032601014.2
type: Protein
SIO_000068: ncbiprotein

position:251493:1
position: 251493
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:254282:1
position: 254282
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:251493-251942:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:253023-254282:1:exon

HOXC4
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: HOXC4
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(270703..277794)
location: region:270703-277794:-1
so has part: feature:270703-277794:-1:exon
subclass of: SO_0000010

121468266
type: Gene
SIO_000068: ncbigene

position:270703:-1
position: 270703
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:277794:-1
position: 277794
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:270703-277794:-1:exon

HOXC4
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: HOXC4
product: homeobox C4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 22 Proteins, and 77% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_041711634.1
SIO_010081: HOXC4
subclass of: SO_0000673
so part of: HOXC4
location: complement(join(270703..271064,277342..277794))
location: region:270703-277794:-1
so has part: feature:277342-277794:-1:exon
so has part: feature:270703-271064:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:277342-277794:-1:exon

position:277342:-1
position: 277342
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:270703-271064:-1:exon

position:271064:-1
position: 271064
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

HOXC4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: HOXC4
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: homeobox protein Hox-C4
translation: MIMSSYLMDSNYIDPKFPPCEEYSQSNYIPEPGAEFYGRREPGGFPQHPAELFGVTRGAFPERPFGCGGLRGAGGGGGGGGGGGGGGGGGGGRQHLAEKPQLCEPPGPAPCAEPEAEPGAPGKAPVVYPWMKKIHVSTVNPNFSGGEPKRSRTAYTRQQVLELEKEFHYNRYLTRRRRIEIAHALSLSERQIKIWFQNRRMKWKKDHRLPNTKTRAAPAEPPPPPAEPPRPEDITRL
SIO_010081: HOXC4
subclass of: SO_0000673
so part of: HOXC4
location: complement(join(270766..271064,277342..277756))
location: region:270766-277756:-1
so has part: feature:277342-277756:-1:exon
so has part: feature:270766-271064:-1:exon

XP_041567568.1
type: Protein
SIO_000068: ncbiprotein

position:270766:-1
position: 270766
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:277756:-1
position: 277756
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:277342-277756:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:270766-271064:-1:exon

HOXC6
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: HOXC6
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(300788..303443)
location: region:300788-303443:-1
so has part: feature:300788-303443:-1:exon
subclass of: SO_0000010

100222399
type: Gene
SIO_000068: ncbigene

position:300788:-1
position: 300788
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:303443:-1
position: 303443
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:300788-303443:-1:exon

HOXC6
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: HOXC6
product: homeobox C6
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 14 Proteins, and 94% coverage of the annotated genomic feature by RNAseq alignments, including 17 samples with support for all annotated introns
transcript id: XM_041711579.1
SIO_010081: HOXC6
subclass of: SO_0000673
so part of: HOXC6
location: complement(join(300788..301210,302840..303443))
location: region:300788-303443:-1
so has part: feature:302840-303443:-1:exon
so has part: feature:300788-301210:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:302840-303443:-1:exon

position:302840:-1
position: 302840
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:300788-301210:-1:exon

position:301210:-1
position: 301210
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

HOXC6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: HOXC6
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: homeobox protein Hox-C6
translation: MNSYFTNPSLSCHLGGGQEVLPNVAALNSSYDPVRHFGSYGAAVAQNRIYSSPFYSPQDNPVVFGSGRSPYEYGSNAFYQDKEVLSSCRQSSVGAHGTPNSIAQDFPSEQSRGAAQEQKSGIQIYPWMQRMNSHSGVGYGADRRRGRQIYSRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKETNLSSTLAGAAGGGGGGGGGGGGGGGGGGGGGGGAAAADSLAKEEKRDETEEEKKE
SIO_010081: HOXC6
subclass of: SO_0000673
so part of: HOXC6
location: complement(join(300843..301210,302840..303245))
location: region:300843-303245:-1
so has part: feature:302840-303245:-1:exon
so has part: feature:300843-301210:-1:exon

XP_041567513.1
type: Protein
SIO_000068: ncbiprotein

position:300843:-1
position: 300843
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:303245:-1
position: 303245
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:302840-303245:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:300843-301210:-1:exon

HOXC8
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: HOXC8
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(324190..330818)
location: region:324190-330818:-1
so has part: feature:324190-330818:-1:exon
subclass of: SO_0000010

121468240
type: Gene
SIO_000068: ncbigene

position:324190:-1
position: 324190
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:330818:-1
position: 330818
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:324190-330818:-1:exon

HOXC8
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: HOXC8
product: homeobox C8
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 31 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XM_041711580.1
SIO_010081: HOXC8
subclass of: SO_0000673
so part of: HOXC8
location: complement(join(324190..324708,330079..330818))
location: region:324190-330818:-1
so has part: feature:330079-330818:-1:exon
so has part: feature:324190-324708:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:330079-330818:-1:exon

position:330079:-1
position: 330079
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:324190-324708:-1:exon

position:324708:-1
position: 324708
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

HOXC8
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: HOXC8
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: homeobox protein Hox-C8
translation: MSSYFVNPLFSKYKGGESLEPTYYDCRFPQSVGRSPAAVLYGPGGAAPSFQHPSHHVQEFFHHGASGISSPSGYQQNAPCALACHGDASKFYGYEALPRQALYGAQQDAPAVPYADCKSSAGGGGGGGGGGAEGQGGHLSQSSSPSLMFPWMRPHAPGRRSGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVSHALGLSERQVKIWFQNRRMKWKKENNKDKLPGAARDEEKGEEEGHEEEEKEEEEKEESKD
SIO_010081: HOXC8
subclass of: SO_0000673
so part of: HOXC8
location: complement(join(324413..324708,330079..330544))
location: region:324413-330544:-1
so has part: feature:330079-330544:-1:exon
so has part: feature:324413-324708:-1:exon

XP_041567514.1
type: Protein
SIO_000068: ncbiprotein

position:324413:-1
position: 324413
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:330544:-1
position: 330544
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:330079-330544:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:324413-324708:-1:exon

HOXC9
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: HOXC9
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(341325..344207)
location: region:341325-344207:-1
so has part: feature:341325-344207:-1:exon
subclass of: SO_0000010

100230015
type: Gene
SIO_000068: ncbigene

position:341325:-1
position: 341325
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:344207:-1
position: 344207
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:341325-344207:-1:exon

HOXC9
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: HOXC9
product: homeobox C9
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 22 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns
transcript id: XM_002195933.4
SIO_010081: HOXC9
subclass of: SO_0000673
so part of: HOXC9
location: complement(join(341325..341588,343477..344207))
location: region:341325-344207:-1
so has part: feature:343477-344207:-1:exon
so has part: feature:341325-341588:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:343477-344207:-1:exon

position:343477:-1
position: 343477
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:341325-341588:-1:exon

position:341588:-1
position: 341588
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

HOXC9
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: HOXC9
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: homeobox protein Hox-C9
translation: MSASGPISNYYVDSLIGPDNEELLAPRFAGPGAARPAGLVPDCADFPSCSFAPKPAVFTTSWAPVPSQPSVGYPHPHPAGPYAPQAEPRYVRTWLEPLAGAVSFPAFGARPYGLKADAFAAPRRAECGPADGRAYADFVYAAPGELRERAAQNIPSSPESEAIAAGKHKEEKHELDPNNPVANWIHARSTRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARVLNLTERQVKIWFQNRRMKMKKMNKEKSDKDQQ
SIO_010081: HOXC9
subclass of: SO_0000673
so part of: HOXC9
location: complement(join(341344..341588,343477..344008))
location: region:341344-344008:-1
so has part: feature:343477-344008:-1:exon
so has part: feature:341344-341588:-1:exon

XP_002195969.1
type: Protein
SIO_000068: ncbiprotein

position:341344:-1
position: 341344
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:344008:-1
position: 344008
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:343477-344008:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:341344-341588:-1:exon

HOXC10
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: HOXC10
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(355462..362761)
location: region:355462-362761:-1
so has part: feature:355462-362761:-1:exon
subclass of: SO_0000010

115490578
type: Gene
SIO_000068: ncbigene

position:355462:-1
position: 355462
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:362761:-1
position: 362761
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:355462-362761:-1:exon

HOXC10
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: HOXC10
product: homeobox C10
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 26 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XM_030259509.3
SIO_010081: HOXC10
subclass of: SO_0000673
so part of: HOXC10
location: complement(join(355462..355824,362010..362761))
location: region:355462-362761:-1
so has part: feature:362010-362761:-1:exon
so has part: feature:355462-355824:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:362010-362761:-1:exon

position:362010:-1
position: 362010
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:355462-355824:-1:exon

position:355824:-1
position: 355824
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

HOXC10
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: HOXC10
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: homeobox protein Hox-C10
translation: MSCPNGAAPNAFLMEPLPRPDPFAAGAGLFAQPGDFSPLRSCAALPKRDEAALGSFPPYLAPLDTWADPKSAFRIEQPVARQLPSCAFPAVKEEGGCCMFSAEKRAKSGENGAEAALFPAPLAEPCLADHEVPVPGYYRYPALQKSPDPPEFQAAFEGRSGRGERLEAPEGVPPKFQRNCPENAGAEQPQGEIKAEKTKASAAEAEKEMSKSTDTASTDNSDSEAKDEAKAEGAGGTWLTARSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSIALTDRQVKIWFQNRRMKLKKMNRENRIRELSAGFSFS
SIO_010081: HOXC10
subclass of: SO_0000673
so part of: HOXC10
location: complement(join(355547..355824,362010..362688))
location: region:355547-362688:-1
so has part: feature:362010-362688:-1:exon
so has part: feature:355547-355824:-1:exon

XP_030115369.3
type: Protein
SIO_000068: ncbiprotein

position:355547:-1
position: 355547
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:362688:-1
position: 362688
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:362010-362688:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:355547-355824:-1:exon

HOXC11
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: HOXC11
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(376804..382371)
location: region:376804-382371:-1
so has part: feature:376804-382371:-1:exon
subclass of: SO_0000010

121468245
type: Gene
SIO_000068: ncbigene

position:376804:-1
position: 376804
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:382371:-1
position: 382371
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:376804-382371:-1:exon

HOXC11
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: HOXC11
product: homeobox C11
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 19 Proteins, and 90% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_041711594.1
SIO_010081: HOXC11
subclass of: SO_0000673
so part of: HOXC11
location: complement(join(376804..377159,381680..382371))
location: region:376804-382371:-1
so has part: feature:381680-382371:-1:exon
so has part: feature:376804-377159:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:381680-382371:-1:exon

position:381680:-1
position: 381680
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:376804-377159:-1:exon

position:377159:-1
position: 377159
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

HOXC11
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: HOXC11
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: homeobox protein Hox-C11
translation: MFNSVNLGNFCPSQTRKERGGGGGGDFGDRAGNLYLPSCTYYVPEFPSVPSFGPARQISYPYAANLPREVPYALEPAGKWHPRGNYAACYSAEELMHRECLPPAEVLLKSENFHHHHHHHQHQQHQQQHPAPQPPPPPGFYPAAAKNSALPQSFERFLESPERAGGERGAGGAGGSAHDEEDEEEEEENANPGSASASSSSGAKEGSKSGAQSAPRPRKKRCPYSKFQIRELEREFFFNVYINKEKRLQLSRLLNLSDRQVKIWFQNRRMKEKKLSRDRLQFFSGNPLL
SIO_010081: HOXC11
subclass of: SO_0000673
so part of: HOXC11
location: complement(join(376927..377159,381680..382316))
location: region:376927-382316:-1
so has part: feature:381680-382316:-1:exon
so has part: feature:376927-377159:-1:exon

XP_041567528.1
type: Protein
SIO_000068: ncbiprotein

position:376927:-1
position: 376927
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:382316:-1
position: 382316
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:381680-382316:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:376927-377159:-1:exon

HOXC12
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: HOXC12
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(398306..404082)
location: region:398306-404082:-1
so has part: feature:398306-404082:-1:exon
subclass of: SO_0000010

100220504
type: Gene
SIO_000068: ncbigene

position:398306:-1
position: 398306
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:404082:-1
position: 404082
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:398306-404082:-1:exon

HOXC12
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: HOXC12
product: homeobox C12
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins, and 93% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XM_032744903.2
SIO_010081: HOXC12
subclass of: SO_0000673
so part of: HOXC12
location: complement(join(398306..398544,403402..404082))
location: region:398306-404082:-1
so has part: feature:403402-404082:-1:exon
so has part: feature:398306-398544:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:403402-404082:-1:exon

position:403402:-1
position: 403402
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:398306-398544:-1:exon

position:398544:-1
position: 398544
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

HOXC12
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: HOXC12
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: homeobox protein Hox-C12
translation: MGEHNLLNPGFVGPLLNIHTGDAFYFPNFRASGAQLPALPSLPGYPRRDNFGSLPAWAPSEPCGPYAQPYLGFGRACELARGEEGKCCYREGDKGRDGARDAPLLPLEPLPAGGAAGGGASLGSLGGNLGNLGGNLGNLGNLGNLGGGFGKFEFAGPEGGAAEAQSCPSLESDSGSSLLTEGGKGDAPGLVSPLNAGGGGAPWYPMHTRSRKKRKPYSKLQLAELEGEFLVNEFITRQRRRELSDRLNLSDQQVKIWFQNRRMKKKRLLLREQALSFF
SIO_010081: HOXC12
subclass of: SO_0000673
so part of: HOXC12
location: complement(join(398306..398544,403402..403999))
location: region:398306-403999:-1
so has part: feature:403402-403999:-1:exon
so has part: feature:398306-398544:-1:exon

XP_032600794.2
type: Protein
SIO_000068: ncbiprotein

position:403999:-1
position: 403999
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:403402-403999:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:398306-398544:-1:exon

HOXC13
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: HOXC13
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(417407..425145)
location: region:417407-425145:-1
so has part: feature:417407-425145:-1:exon
subclass of: SO_0000010

100223401
type: Gene
SIO_000068: ncbigene

position:417407:-1
position: 417407
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:425145:-1
position: 425145
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:417407-425145:-1:exon

HOXC13
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: HOXC13
product: homeobox C13
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 20 Proteins, and 65% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_041711636.1
SIO_010081: HOXC13
subclass of: SO_0000673
so part of: HOXC13
location: complement(join(417407..417715,424473..424969,425045..425145))
location: region:417407-425145:-1
so has part: feature:425045-425145:-1:exon
so has part: feature:424473-424969:-1:exon
so has part: feature:417407-417715:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:425045-425145:-1:exon

position:425045:-1
position: 425045
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:424473-424969:-1:exon

position:424473:-1
position: 424473
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:424969:-1
position: 424969
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:417407-417715:-1:exon

position:417715:-1
position: 417715
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

HOXC13
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: HOXC13
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: homeobox protein Hox-C13
translation: MTAPLGLPPRWPDALGCRCEDAPREKPRMESLGHLGHCREMLPHAGLAAPAAAAADGAAYAELASAEPPRQCPSGSLGYGGYPFAPGYYGCRLAGVNLQQKPCGYHPPDKFAEAGGPLAGEELPARAKEFSFYPGFPGSYQAVPGYLDVSVVPVPEPRHEALLPMEGYQPWALANGWDGQVYCSKEQPQPAHLWKSPFPDVVPLQAEPSPFRRGRKKRVPYTKPQLKELEREFAASRFITKEKRRRISAATSLSERQVTIWFQNRRVKEKKGVSKAKPGHLHAT
SIO_010081: HOXC13
subclass of: SO_0000673
so part of: HOXC13
location: complement(join(417459..417715,424473..424969,425045..425145))
location: region:417459-425145:-1
so has part: feature:425045-425145:-1:exon
so has part: feature:424473-424969:-1:exon
so has part: feature:417459-417715:-1:exon

XP_041567570.1
type: Protein
SIO_000068: ncbiprotein

position:417459:-1
position: 417459
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:425045-425145:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:424473-424969:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:417459-417715:-1:exon

LOC100219141
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: LOC100219141
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 449480..498200
location: region:449480-498200:1
so has part: feature:449480-498200:1:exon
subclass of: SO_0000010

100219141
type: Gene
SIO_000068: ncbigene

position:449480:1
position: 449480
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:498200:1
position: 498200
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:449480-498200:1:exon

LOC100219141
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: LOC100219141
product: cyclic AMP-dependent transcription factor ATF-7-like, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 39 samples with support for all annotated introns
transcript id: XM_032744893.2
SIO_010081: LOC100219141
subclass of: SO_0000673
so part of: LOC100219141
location: join(449480..449529,461631..461689,481570..481666,483922..484040,489135..489269,490067..490227,490815..490914,491251..491364,491974..492120,493089..493290,493786..493894,496724..498200)
location: region:449480-498200:1
so has part: feature:449480-449529:1:exon
so has part: feature:461631-461689:1:exon
so has part: feature:481570-481666:1:exon
so has part: feature:483922-484040:1:exon
so has part: feature:489135-489269:1:exon
so has part: feature:490067-490227:1:exon
so has part: feature:490815-490914:1:exon
so has part: feature:491251-491364:1:exon
so has part: feature:491974-492120:1:exon
so has part: feature:493089-493290:1:exon
so has part: feature:493786-493894:1:exon
so has part: feature:496724-498200:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:449480-449529:1:exon

position:449529:1
position: 449529
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:461631-461689:1:exon

position:461631:1
position: 461631
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:461689:1
position: 461689
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:481570-481666:1:exon

position:481570:1
position: 481570
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:481666:1
position: 481666
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:483922-484040:1:exon

position:483922:1
position: 483922
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:484040:1
position: 484040
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:489135-489269:1:exon

position:489135:1
position: 489135
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:489269:1
position: 489269
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:490067-490227:1:exon

position:490067:1
position: 490067
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:490227:1
position: 490227
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:490815-490914:1:exon

position:490815:1
position: 490815
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:490914:1
position: 490914
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:491251-491364:1:exon

position:491251:1
position: 491251
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:491364:1
position: 491364
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:491974-492120:1:exon

position:491974:1
position: 491974
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:492120:1
position: 492120
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:493089-493290:1:exon

position:493089:1
position: 493089
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:493290:1
position: 493290
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:493786-493894:1:exon

position:493786:1
position: 493786
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:493894:1
position: 493894
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:496724-498200:1:exon

position:496724:1
position: 496724
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC100219141
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: LOC100219141
product: cyclic AMP-dependent transcription factor ATF-7-like, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XM_032744896.2
SIO_010081: LOC100219141
subclass of: SO_0000673
so part of: LOC100219141
location: join(449490..449529,461631..461689,481570..481666,483922..484040,489135..489269,490067..490227,490815..490914,491251..491364,491974..492120,493089..493290,493786..493894,494643..495144)
location: region:449490-495144:1
so has part: feature:449490-449529:1:exon
so has part: feature:461631-461689:1:exon
so has part: feature:481570-481666:1:exon
so has part: feature:483922-484040:1:exon
so has part: feature:489135-489269:1:exon
so has part: feature:490067-490227:1:exon
so has part: feature:490815-490914:1:exon
so has part: feature:491251-491364:1:exon
so has part: feature:491974-492120:1:exon
so has part: feature:493089-493290:1:exon
so has part: feature:493786-493894:1:exon
so has part: feature:494643-495144:1:exon

position:449490:1
position: 449490
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:495144:1
position: 495144
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:449490-449529:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:461631-461689:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:481570-481666:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:483922-484040:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:489135-489269:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:490067-490227:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:490815-490914:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:491251-491364:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:491974-492120:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:493089-493290:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:493786-493894:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:494643-495144:1:exon

position:494643:1
position: 494643
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC100219141
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: LOC100219141
product: cyclic AMP-dependent transcription factor ATF-7-like, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XM_032744895.2
SIO_010081: LOC100219141
subclass of: SO_0000673
so part of: LOC100219141
location: join(449490..449529,461631..461689,481570..481666,483922..484040,489135..489269,490067..490227,490815..490914,491251..491364,491974..492120,493089..493286,493786..493894,494643..494981)
location: region:449490-494981:1
so has part: feature:449490-449529:1:exon
so has part: feature:461631-461689:1:exon
so has part: feature:481570-481666:1:exon
so has part: feature:483922-484040:1:exon
so has part: feature:489135-489269:1:exon
so has part: feature:490067-490227:1:exon
so has part: feature:490815-490914:1:exon
so has part: feature:491251-491364:1:exon
so has part: feature:491974-492120:1:exon
so has part: feature:493089-493286:1:exon
so has part: feature:493786-493894:1:exon
so has part: feature:494643-494981:1:exon

position:494981:1
position: 494981
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:449490-449529:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:461631-461689:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:481570-481666:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:483922-484040:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:489135-489269:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:490067-490227:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:490815-490914:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:491251-491364:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:491974-492120:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:493089-493286:1:exon

position:493286:1
position: 493286
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:493786-493894:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:494643-494981:1:exon

LOC100219141
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: LOC100219141
product: cyclic AMP-dependent transcription factor ATF-7-like, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 39 samples with support for all annotated introns
transcript id: XM_032744894.2
SIO_010081: LOC100219141
subclass of: SO_0000673
so part of: LOC100219141
location: join(449491..449529,461631..461689,481570..481666,483922..484040,489135..489269,490067..490227,490815..490914,491251..491364,491974..492120,493089..493286,493786..493894,496724..497044)
location: region:449491-497044:1
so has part: feature:449491-449529:1:exon
so has part: feature:461631-461689:1:exon
so has part: feature:481570-481666:1:exon
so has part: feature:483922-484040:1:exon
so has part: feature:489135-489269:1:exon
so has part: feature:490067-490227:1:exon
so has part: feature:490815-490914:1:exon
so has part: feature:491251-491364:1:exon
so has part: feature:491974-492120:1:exon
so has part: feature:493089-493286:1:exon
so has part: feature:493786-493894:1:exon
so has part: feature:496724-497044:1:exon

position:449491:1
position: 449491
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:497044:1
position: 497044
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:449491-449529:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:461631-461689:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:481570-481666:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:483922-484040:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:489135-489269:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:490067-490227:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:490815-490914:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:491251-491364:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:491974-492120:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:493089-493286:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:493786-493894:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:496724-497044:1:exon

LOC100219141
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: LOC100219141
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: cyclic AMP-dependent transcription factor ATF-7-like isoform X1
translation: MGDDRPFVCGAPGCGQRFTNEDHLAVHKHKHEMTLKFGPARTDSVIIADQTPTPTRFLKNCEEVGLFNELASSFEHEFKKAAEDDEKKSPGALDMSLPPTPDMKIKEEEPVEVDSSPPDSPAPRPRSAPRQDKESPSRPVILSTPTPTIVRPGSLPLHLGGYEPLHPTLPSPTSVITQAPPSNRQLGSPGGSLPLVVQLANGQTVPVLPGPAVQMPSVISLARPMAMVPNIPGIPGPPINSSGSLSPSGLPVHSEAKMRLKASLAGSSSLNGGGLAVGSASSMVTARPEQSQALGQHPDAPSPAQPQVSPAQPTPSTGGRRRRAADEDPDERRQRFLERNRAAASRCRQKRKLWVSSLEKKAEELTSQNIQLSVKRGDAAPERGGSAEAAAAGPQGLSRHRPAEEEPGIPGQPEGALGARGLSRARHPAQLGPQRAGGRRAFGRRGRGHLGAGAAGRAKDRAGRARGLARHHGPTVAVCRQMMARSALGLAAGPFLCSLGFSLLLFRAELRAAPALPHCPRSSGAEPREGRVRPSWGKH
SIO_010081: LOC100219141
subclass of: SO_0000673
so part of: LOC100219141
location: join(461642..461689,481570..481666,483922..484040,489135..489269,490067..490227,490815..490914,491251..491364,491974..492120,493089..493290,493786..493894,496724..497111)
location: region:461642-497111:1
so has part: feature:461642-461689:1:exon
so has part: feature:481570-481666:1:exon
so has part: feature:483922-484040:1:exon
so has part: feature:489135-489269:1:exon
so has part: feature:490067-490227:1:exon
so has part: feature:490815-490914:1:exon
so has part: feature:491251-491364:1:exon
so has part: feature:491974-492120:1:exon
so has part: feature:493089-493290:1:exon
so has part: feature:493786-493894:1:exon
so has part: feature:496724-497111:1:exon

XP_032600784.2
type: Protein
SIO_000068: ncbiprotein

position:461642:1
position: 461642
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:497111:1
position: 497111
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:461642-461689:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:481570-481666:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:483922-484040:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:489135-489269:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:490067-490227:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:490815-490914:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:491251-491364:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:491974-492120:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:493089-493290:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:493786-493894:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:496724-497111:1:exon

LOC100219141
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: LOC100219141
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: cyclic AMP-dependent transcription factor ATF-7-like isoform X2
translation: MGDDRPFVCGAPGCGQRFTNEDHLAVHKHKHEMTLKFGPARTDSVIIADQTPTPTRFLKNCEEVGLFNELASSFEHEFKKAAEDDEKKSPGALDMSLPPTPDMKIKEEEPVEVDSSPPDSPAPRPRSAPRQDKESPSRPVILSTPTPTIVRPGSLPLHLGGYEPLHPTLPSPTSVITQAPPSNRQLGSPGGSLPLVVQLANGQTVPVLPGPAVQMPSVISLARPMAMVPNIPGIPGPPINSSGSLSPSGLPVHSEAKMRLKASLAGSSSLNGGGLAVGSASSMVTARPEQSQALGQHPDAPSPAQPQVSPAQPTPSTGGRRRRAADEDPDERRQRFLERNRAAASRCRQKRKLWVSSLEKKAEELTSQNIQLSNEVTLLRNEVAQLKQLLLAHKDCPVTALQKKSQGYLGSPKERSEPAGSPAPVIQHSSGPNGLGGAARSAAEAVATSVLAQLAGQRTELAVPAASPVIMAPQSQSAGR
SIO_010081: LOC100219141
subclass of: SO_0000673
so part of: LOC100219141
location: join(461642..461689,481570..481666,483922..484040,489135..489269,490067..490227,490815..490914,491251..491364,491974..492120,493089..493286,493786..493894,496724..496938)
location: region:461642-496938:1
so has part: feature:461642-461689:1:exon
so has part: feature:481570-481666:1:exon
so has part: feature:483922-484040:1:exon
so has part: feature:489135-489269:1:exon
so has part: feature:490067-490227:1:exon
so has part: feature:490815-490914:1:exon
so has part: feature:491251-491364:1:exon
so has part: feature:491974-492120:1:exon
so has part: feature:493089-493286:1:exon
so has part: feature:493786-493894:1:exon
so has part: feature:496724-496938:1:exon

XP_032600785.2
type: Protein
SIO_000068: ncbiprotein

position:496938:1
position: 496938
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:461642-461689:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:481570-481666:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:483922-484040:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:489135-489269:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:490067-490227:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:490815-490914:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:491251-491364:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:491974-492120:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:493089-493286:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:493786-493894:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:496724-496938:1:exon

LOC100219141
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: LOC100219141
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: cyclic AMP-dependent transcription factor ATF-7-like isoform X3
translation: MGDDRPFVCGAPGCGQRFTNEDHLAVHKHKHEMTLKFGPARTDSVIIADQTPTPTRFLKNCEEVGLFNELASSFEHEFKKAAEDDEKKSPGALDMSLPPTPDMKIKEEEPVEVDSSPPDSPAPRPRSAPRQDKESPSRPVILSTPTPTIVRPGSLPLHLGGYEPLHPTLPSPTSVITQAPPSNRQLGSPGGSLPLVVQLANGQTVPVLPGPAVQMPSVISLARPMAMVPNIPGIPGPPINSSGSLSPSGLPVHSEAKMRLKASLAGSSSLNGGGLAVGSASSMVTARPEQSQALGQHPDAPSPAQPQVSPAQPTPSTGGRRRRAADEDPDERRQRFLERNRAAASRCRQKRKLWVSSLEKKAEELTSQNIQLSVKRGDAAPERGGSAEAAAAGPQGLSRHRPAEEEPGIPGFAAPQQRPSQRGQALSMTSWSSIAHSLQFPPSWLGLGVTKKKKIEKGCFLSPFLPIIFF
SIO_010081: LOC100219141
subclass of: SO_0000673
so part of: LOC100219141
location: join(461642..461689,481570..481666,483922..484040,489135..489269,490067..490227,490815..490914,491251..491364,491974..492120,493089..493290,493786..493894,494643..494823)
location: region:461642-494823:1
so has part: feature:461642-461689:1:exon
so has part: feature:481570-481666:1:exon
so has part: feature:483922-484040:1:exon
so has part: feature:489135-489269:1:exon
so has part: feature:490067-490227:1:exon
so has part: feature:490815-490914:1:exon
so has part: feature:491251-491364:1:exon
so has part: feature:491974-492120:1:exon
so has part: feature:493089-493290:1:exon
so has part: feature:493786-493894:1:exon
so has part: feature:494643-494823:1:exon

XP_032600787.2
type: Protein
SIO_000068: ncbiprotein

position:494823:1
position: 494823
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:461642-461689:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:481570-481666:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:483922-484040:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:489135-489269:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:490067-490227:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:490815-490914:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:491251-491364:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:491974-492120:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:493089-493290:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:493786-493894:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:494643-494823:1:exon

LOC100219141
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: LOC100219141
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: cyclic AMP-dependent transcription factor ATF-7-like isoform X4
translation: MGDDRPFVCGAPGCGQRFTNEDHLAVHKHKHEMTLKFGPARTDSVIIADQTPTPTRFLKNCEEVGLFNELASSFEHEFKKAAEDDEKKSPGALDMSLPPTPDMKIKEEEPVEVDSSPPDSPAPRPRSAPRQDKESPSRPVILSTPTPTIVRPGSLPLHLGGYEPLHPTLPSPTSVITQAPPSNRQLGSPGGSLPLVVQLANGQTVPVLPGPAVQMPSVISLARPMAMVPNIPGIPGPPINSSGSLSPSGLPVHSEAKMRLKASLAGSSSLNGGGLAVGSASSMVTARPEQSQALGQHPDAPSPAQPQVSPAQPTPSTGGRRRRAADEDPDERRQRFLERNRAAASRCRQKRKLWVSSLEKKAEELTSQNIQLSNEVTLLRNEVAQLKQLLLAHKDCPVTALQKKSQGYLDLRLRSKGRVREARLSP
SIO_010081: LOC100219141
subclass of: SO_0000673
so part of: LOC100219141
location: join(461642..461689,481570..481666,483922..484040,489135..489269,490067..490227,490815..490914,491251..491364,491974..492120,493089..493286,493786..493894,494643..494695)
location: region:461642-494695:1
so has part: feature:461642-461689:1:exon
so has part: feature:481570-481666:1:exon
so has part: feature:483922-484040:1:exon
so has part: feature:489135-489269:1:exon
so has part: feature:490067-490227:1:exon
so has part: feature:490815-490914:1:exon
so has part: feature:491251-491364:1:exon
so has part: feature:491974-492120:1:exon
so has part: feature:493089-493286:1:exon
so has part: feature:493786-493894:1:exon
so has part: feature:494643-494695:1:exon

XP_032600786.2
type: Protein
SIO_000068: ncbiprotein

position:494695:1
position: 494695
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:461642-461689:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:481570-481666:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:483922-484040:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:489135-489269:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:490067-490227:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:490815-490914:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:491251-491364:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:491974-492120:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:493089-493286:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:493786-493894:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:494643-494695:1:exon

LOC121468234
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: LOC121468234
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 498272..500262
location: region:498272-500262:1
so has part: feature:498272-500262:1:exon
subclass of: SO_0000011

121468234
type: Gene
SIO_000068: ncbigene

position:498272:1
position: 498272
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:500262:1
position: 500262
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:498272-500262:1:exon

LOC121468234
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 59729
nc RNA class: lncRNA
gene: LOC121468234
product: uncharacterized LOC121468234
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 17 samples with support for all annotated introns
transcript id: XR_005978304.1
SIO_010081: LOC121468234
subclass of: SO_0000673
so part of: LOC121468234
location: join(498272..498670,498773..500262)
location: region:498272-500262:1
so has part: feature:498272-498670:1:exon
so has part: feature:498773-500262:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:498272-498670:1:exon

position:498670:1
position: 498670
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:498773-500262:1:exon

position:498773:1
position: 498773
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

TARBP2
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: TARBP2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(501869..507105)
location: region:501869-507105:-1
so has part: feature:501869-507105:-1:exon
subclass of: SO_0000010

100218361
type: Gene
SIO_000068: ncbigene

position:501869:-1
position: 501869
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:507105:-1
position: 507105
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:501869-507105:-1:exon

TARBP2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: TARBP2
product: TARBP2 subunit of RISC loading complex, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 ESTs, 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 63 samples with support for all annotated introns
transcript id: XM_041711586.1
SIO_010081: TARBP2
subclass of: SO_0000673
so part of: TARBP2
location: complement(join(501869..502560,502651..502840,503470..503597,503697..503814,504530..504602,504701..504784,505014..505113,506115..506284,507022..507105))
location: region:501869-507105:-1
so has part: feature:507022-507105:-1:exon
so has part: feature:506115-506284:-1:exon
so has part: feature:505014-505113:-1:exon
so has part: feature:504701-504784:-1:exon
so has part: feature:504530-504602:-1:exon
so has part: feature:503697-503814:-1:exon
so has part: feature:503470-503597:-1:exon
so has part: feature:502651-502840:-1:exon
so has part: feature:501869-502560:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:507022-507105:-1:exon

position:507022:-1
position: 507022
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:506115-506284:-1:exon

position:506115:-1
position: 506115
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:506284:-1
position: 506284
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:505014-505113:-1:exon

position:505014:-1
position: 505014
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:505113:-1
position: 505113
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:504701-504784:-1:exon

position:504701:-1
position: 504701
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:504784:-1
position: 504784
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:504530-504602:-1:exon

position:504530:-1
position: 504530
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:504602:-1
position: 504602
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:503697-503814:-1:exon

position:503697:-1
position: 503697
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:503814:-1
position: 503814
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:503470-503597:-1:exon

position:503470:-1
position: 503470
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:503597:-1
position: 503597
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:502651-502840:-1:exon

position:502651:-1
position: 502651
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:502840:-1
position: 502840
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:501869-502560:-1:exon

position:502560:-1
position: 502560
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

TARBP2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: TARBP2
product: TARBP2 subunit of RISC loading complex, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 ESTs, 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 20 samples with support for all annotated introns
transcript id: XM_041711585.1
SIO_010081: TARBP2
subclass of: SO_0000673
so part of: TARBP2
location: complement(join(501869..502560,502651..502840,503470..503597,503697..503814,504530..504602,504701..504784,505014..505113,506115..506302,507022..507037))
location: region:501869-507037:-1
so has part: feature:507022-507037:-1:exon
so has part: feature:506115-506302:-1:exon
so has part: feature:505014-505113:-1:exon
so has part: feature:504701-504784:-1:exon
so has part: feature:504530-504602:-1:exon
so has part: feature:503697-503814:-1:exon
so has part: feature:503470-503597:-1:exon
so has part: feature:502651-502840:-1:exon
so has part: feature:501869-502560:-1:exon

position:507037:-1
position: 507037
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:507022-507037:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:506115-506302:-1:exon

position:506302:-1
position: 506302
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:505014-505113:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:504701-504784:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:504530-504602:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:503697-503814:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:503470-503597:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:502651-502840:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:501869-502560:-1:exon

TARBP2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: TARBP2
product: TARBP2 subunit of RISC loading complex, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 50 samples with support for all annotated introns
transcript id: XM_041711587.1
SIO_010081: TARBP2
subclass of: SO_0000673
so part of: TARBP2
location: complement(join(501869..502560,502651..502840,503470..503597,503697..503814,504530..504602,504701..504784,505014..505113,505569..505644))
location: region:501869-505644:-1
so has part: feature:505569-505644:-1:exon
so has part: feature:505014-505113:-1:exon
so has part: feature:504701-504784:-1:exon
so has part: feature:504530-504602:-1:exon
so has part: feature:503697-503814:-1:exon
so has part: feature:503470-503597:-1:exon
so has part: feature:502651-502840:-1:exon
so has part: feature:501869-502560:-1:exon

position:505644:-1
position: 505644
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:505569-505644:-1:exon

position:505569:-1
position: 505569
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:505014-505113:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:504701-504784:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:504530-504602:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:503697-503814:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:503470-503597:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:502651-502840:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:501869-502560:-1:exon

TARBP2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: TARBP2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: RISC-loading complex subunit TARBP2 isoform X2
translation: MSEEGAGGARRSGGAFPSLEQMVAASPGKTPISLLQEYGTRLGRTPGYDLLKAEGQAHQPNFTFRVTLGDISCTGQGPSKKAAKHKAAEVALRLLRGGGAMLEPLEQSSAFPPEPPAEPGPAAPPPAPAAPPTSPRGAPLEMKTPVSPPQAECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFVEIGSGTSKKLAKRNAAAKMLVRIHNVPMEPRDGSEAEGEEDQFNMTCPRLEGLRGRAPGCTWDSLRNSAGEKLGQLRGRGGNPAPGGACALLQELSEEQSFAISYLDIDALSLSGLHQCLVELSTQPTTVCHGSAPSRDGARAQAARNALQYLRIMAGGK
SIO_010081: TARBP2
subclass of: SO_0000673
so part of: TARBP2
location: complement(join(502403..502560,502651..502840,503470..503597,503697..503814,504530..504602,504701..504784,505014..505113,506115..506284,507022..507074))
location: region:502403-507074:-1
so has part: feature:507022-507074:-1:exon
so has part: feature:506115-506284:-1:exon
so has part: feature:505014-505113:-1:exon
so has part: feature:504701-504784:-1:exon
so has part: feature:504530-504602:-1:exon
so has part: feature:503697-503814:-1:exon
so has part: feature:503470-503597:-1:exon
so has part: feature:502651-502840:-1:exon
so has part: feature:502403-502560:-1:exon

XP_041567520.1
type: Protein
SIO_000068: ncbiprotein

position:502403:-1
position: 502403
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:507074:-1
position: 507074
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:507022-507074:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:506115-506284:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:505014-505113:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:504701-504784:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:504530-504602:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:503697-503814:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:503470-503597:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:502651-502840:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:502403-502560:-1:exon

TARBP2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: TARBP2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: RISC-loading complex subunit TARBP2 isoform X1
translation: MVAASPGKTPISLLQEYGTRLGRTPGYDLLKAEGQAHQPNFTFRVTLGDISCTGQGPSKKAAKHKAAEVALRLLRGGGAMLEPLEQSSAFPPEPPAEPGPAAPPPAPAAPPTSPRGAPLEMKTPVSPPQAECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFVEIGSGTSKKLAKRNAAAKMLVRIHNVPMEPRDGSEAEGEEDQFNMTCPRLEGLRGRAPGCTWDSLRNSAGEKLGQLRGRGGNPAPGGACALLQELSEEQSFAISYLDIDALSLSGLHQCLVELSTQPTTVCHGSAPSRDGARAQAARNALQYLRIMAGGK
SIO_010081: TARBP2
subclass of: SO_0000673
so part of: TARBP2
location: complement(join(502403..502560,502651..502840,503470..503597,503697..503814,504530..504602,504701..504784,505014..505113,506115..506274))
location: region:502403-506274:-1
so has part: feature:506115-506274:-1:exon
so has part: feature:505014-505113:-1:exon
so has part: feature:504701-504784:-1:exon
so has part: feature:504530-504602:-1:exon
so has part: feature:503697-503814:-1:exon
so has part: feature:503470-503597:-1:exon
so has part: feature:502651-502840:-1:exon
so has part: feature:502403-502560:-1:exon

XP_041567519.1
type: Protein
SIO_000068: ncbiprotein

position:506274:-1
position: 506274
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:506115-506274:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:505014-505113:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:504701-504784:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:504530-504602:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:503697-503814:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:503470-503597:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:502651-502840:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:502403-502560:-1:exon

TARBP2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: TARBP2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: RISC-loading complex subunit TARBP2 isoform X3
translation: MGSPTAPWAPPCSLGDISCTGQGPSKKAAKHKAAEVALRLLRGGGAMLEPLEQSSAFPPEPPAEPGPAAPPPAPAAPPTSPRGAPLEMKTPVSPPQAECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFVEIGSGTSKKLAKRNAAAKMLVRIHNVPMEPRDGSEAEGEEDQFNMTCPRLEGLRGRAPGCTWDSLRNSAGEKLGQLRGRGGNPAPGGACALLQELSEEQSFAISYLDIDALSLSGLHQCLVELSTQPTTVCHGSAPSRDGARAQAARNALQYLRIMAGGK
SIO_010081: TARBP2
subclass of: SO_0000673
so part of: TARBP2
location: complement(join(502403..502560,502651..502840,503470..503597,503697..503814,504530..504602,504701..504784,505014..505113,505569..505629))
location: region:502403-505629:-1
so has part: feature:505569-505629:-1:exon
so has part: feature:505014-505113:-1:exon
so has part: feature:504701-504784:-1:exon
so has part: feature:504530-504602:-1:exon
so has part: feature:503697-503814:-1:exon
so has part: feature:503470-503597:-1:exon
so has part: feature:502651-502840:-1:exon
so has part: feature:502403-502560:-1:exon

XP_041567521.1
type: Protein
SIO_000068: ncbiprotein

position:505629:-1
position: 505629
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:505569-505629:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:505014-505113:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:504701-504784:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:504530-504602:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:503697-503814:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:503470-503597:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:502651-502840:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:502403-502560:-1:exon

MAP3K12
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: MAP3K12
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 510900..519341
location: region:510900-519341:1
so has part: feature:510900-519341:1:exon
subclass of: SO_0000010

121468229
type: Gene
SIO_000068: ncbigene

position:510900:1
position: 510900
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:519341:1
position: 519341
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:510900-519341:1:exon

MAP3K12
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: MAP3K12
product: mitogen-activated protein kinase kinase kinase 12
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 21 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 85 samples with support for all annotated introns
transcript id: XM_041711513.1
SIO_010081: MAP3K12
subclass of: SO_0000673
so part of: MAP3K12
location: join(510900..511227,511963..512146,512765..512956,513876..514034,514307..514465,515207..515315,515631..515740,516307..516423,516635..516772,517503..517941,518131..518201,518279..518531,519169..519341)
location: region:510900-519341:1
so has part: feature:510900-511227:1:exon
so has part: feature:511963-512146:1:exon
so has part: feature:512765-512956:1:exon
so has part: feature:513876-514034:1:exon
so has part: feature:514307-514465:1:exon
so has part: feature:515207-515315:1:exon
so has part: feature:515631-515740:1:exon
so has part: feature:516307-516423:1:exon
so has part: feature:516635-516772:1:exon
so has part: feature:517503-517941:1:exon
so has part: feature:518131-518201:1:exon
so has part: feature:518279-518531:1:exon
so has part: feature:519169-519341:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:510900-511227:1:exon

position:511227:1
position: 511227
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:511963-512146:1:exon

position:511963:1
position: 511963
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:512146:1
position: 512146
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:512765-512956:1:exon

position:512765:1
position: 512765
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:512956:1
position: 512956
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:513876-514034:1:exon

position:513876:1
position: 513876
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:514034:1
position: 514034
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:514307-514465:1:exon

position:514307:1
position: 514307
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:514465:1
position: 514465
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:515207-515315:1:exon

position:515207:1
position: 515207
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:515315:1
position: 515315
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:515631-515740:1:exon

position:515631:1
position: 515631
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:515740:1
position: 515740
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:516307-516423:1:exon

position:516307:1
position: 516307
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:516423:1
position: 516423
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:516635-516772:1:exon

position:516635:1
position: 516635
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:516772:1
position: 516772
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:517503-517941:1:exon

position:517503:1
position: 517503
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:517941:1
position: 517941
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:518131-518201:1:exon

position:518131:1
position: 518131
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:518201:1
position: 518201
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:518279-518531:1:exon

position:518279:1
position: 518279
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:518531:1
position: 518531
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:519169-519341:1:exon

position:519169:1
position: 519169
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

MAP3K12
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: MAP3K12
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: mitogen-activated protein kinase kinase kinase 12
translation: MACLHETRTPSPSLALPSDGTPEQELTPTQCVLRDVLPAPPAPPEAWPRRAGPRGPELGPEAAGPLAADGAHLRCQAGGGFLEGLFGCLKPVWTMIGKAYAAEHKHPPEDPWEVPFEEILDLQWVGSGAQGAVFLGRFHGEEVAVKKVRDLKETDIKHLRKLKHPNIITFKGVCTQAPCYCIIMEFCAQGQLYEVLRAGRKVTPSLLVDWSMGIAGGMNYLHLHKIIHRDLKSPNMLITYDDVVKISDFGTSKELIDKSTKMSFAGTVAWMAPEVIRNEPVSEKVDIWSFGVVLWELLTGEIPYKDVDSSAIIWGVGSNSLHLPVPSSCPDGFKVLLRQCWNSKPRNRPSFRQILLHLDIASADVLSTPQETYFKSQAEWREEVKLHFEKIKSEGTCLHRLEEELINRRREELRHALDIREHYERKLERANNLYMELSALMLQLELKEKELLRREQALEKRYPGLFKPRVPRGLLHGNAVETLIKKRNVPQKLSPHGKRPDILKPEVLLPKLDAAMAQVALPGCPKGPPSPGRSRRAKGRHRKAGPRGGCGEPGPEAGTPRGPPAAAASPDILGGTLEAAGAPPAAVPDAGPEGATGTQGCPPPQPPTPGEPERESGAGRGGKGGPGQHLTPAALLYRAAVTRGQKRGVSSEEEEGEVDSEVELPLRQRWPPGMSKRQSLSTFSSENFSDGDGDEGHTSEPSHSATPDVGSTNTDERPDDRSEDLLSQGSEIPLDAAPPDGPGRRLGGLSPTKVSEDSDCDSAELDHSGSGEGPPRPTAPPGL
SIO_010081: MAP3K12
subclass of: SO_0000673
so part of: MAP3K12
location: join(510900..511227,511963..512146,512765..512956,513876..514034,514307..514465,515207..515315,515631..515740,516307..516423,516635..516772,517503..517941,518131..518201,518279..518531,519169..519261)
location: region:510900-519261:1
so has part: feature:510900-511227:1:exon
so has part: feature:511963-512146:1:exon
so has part: feature:512765-512956:1:exon
so has part: feature:513876-514034:1:exon
so has part: feature:514307-514465:1:exon
so has part: feature:515207-515315:1:exon
so has part: feature:515631-515740:1:exon
so has part: feature:516307-516423:1:exon
so has part: feature:516635-516772:1:exon
so has part: feature:517503-517941:1:exon
so has part: feature:518131-518201:1:exon
so has part: feature:518279-518531:1:exon
so has part: feature:519169-519261:1:exon

XP_041567447.1
type: Protein
SIO_000068: ncbiprotein

position:519261:1
position: 519261
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:510900-511227:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:511963-512146:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:512765-512956:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:513876-514034:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:514307-514465:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:515207-515315:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:515631-515740:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:516307-516423:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:516635-516772:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:517503-517941:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:518131-518201:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:518279-518531:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:519169-519261:1:exon

PCBP2
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: PCBP2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(519776..533774)
location: region:519776-533774:-1
so has part: feature:519776-533774:-1:exon
subclass of: SO_0000010

100232514
type: Gene
SIO_000068: ncbigene

position:519776:-1
position: 519776
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:533774:-1
position: 533774
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:519776-533774:-1:exon

PCBP2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: PCBP2
product: poly(rC) binding protein 2, transcript variant X15
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 ESTs, 1 long SRA read, 8 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments, including 128 samples with support for all annotated introns
transcript id: XM_030259443.3
SIO_010081: PCBP2
subclass of: SO_0000673
so part of: PCBP2
location: complement(join(519776..520328,522308..522477,523356..523408,524201..524239,524658..524730,525826..525867,528379..528453,528830..528958,529522..529653,530824..530940,531175..531207,531322..531345,531674..531791,533624..533774))
location: region:519776-533774:-1
so has part: feature:533624-533774:-1:exon
so has part: feature:531674-531791:-1:exon
so has part: feature:531322-531345:-1:exon
so has part: feature:531175-531207:-1:exon
so has part: feature:530824-530940:-1:exon
so has part: feature:529522-529653:-1:exon
so has part: feature:528830-528958:-1:exon
so has part: feature:528379-528453:-1:exon
so has part: feature:525826-525867:-1:exon
so has part: feature:524658-524730:-1:exon
so has part: feature:524201-524239:-1:exon
so has part: feature:523356-523408:-1:exon
so has part: feature:522308-522477:-1:exon
so has part: feature:519776-520328:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:533624-533774:-1:exon

position:533624:-1
position: 533624
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:531674-531791:-1:exon

position:531674:-1
position: 531674
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:531791:-1
position: 531791
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:531322-531345:-1:exon

position:531322:-1
position: 531322
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:531345:-1
position: 531345
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:531175-531207:-1:exon

position:531175:-1
position: 531175
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:531207:-1
position: 531207
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:530824-530940:-1:exon

position:530824:-1
position: 530824
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:530940:-1
position: 530940
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:529522-529653:-1:exon

position:529522:-1
position: 529522
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:529653:-1
position: 529653
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:528830-528958:-1:exon

position:528830:-1
position: 528830
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:528958:-1
position: 528958
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:528379-528453:-1:exon

position:528379:-1
position: 528379
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:528453:-1
position: 528453
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:525826-525867:-1:exon

position:525826:-1
position: 525826
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:525867:-1
position: 525867
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:524658-524730:-1:exon

position:524658:-1
position: 524658
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:524730:-1
position: 524730
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:524201-524239:-1:exon

position:524201:-1
position: 524201
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:524239:-1
position: 524239
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:523356-523408:-1:exon

position:523356:-1
position: 523356
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:523408:-1
position: 523408
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:522308-522477:-1:exon

position:522308:-1
position: 522308
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:522477:-1
position: 522477
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:519776-520328:-1:exon

position:520328:-1
position: 520328
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

PCBP2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: PCBP2
product: poly(rC) binding protein 2, transcript variant X13
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 ESTs, 1 long SRA read, 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 129 samples with support for all annotated introns
transcript id: XM_030259440.3
SIO_010081: PCBP2
subclass of: SO_0000673
so part of: PCBP2
location: complement(join(519776..520328,522308..522477,523356..523408,524201..524239,524658..524730,525826..525867,526955..527041,528379..528453,528830..528958,529522..529653,530824..530940,531175..531207,531322..531345,531674..531791,533624..533738))
location: region:519776-533738:-1
so has part: feature:533624-533738:-1:exon
so has part: feature:531674-531791:-1:exon
so has part: feature:531322-531345:-1:exon
so has part: feature:531175-531207:-1:exon
so has part: feature:530824-530940:-1:exon
so has part: feature:529522-529653:-1:exon
so has part: feature:528830-528958:-1:exon
so has part: feature:528379-528453:-1:exon
so has part: feature:526955-527041:-1:exon
so has part: feature:525826-525867:-1:exon
so has part: feature:524658-524730:-1:exon
so has part: feature:524201-524239:-1:exon
so has part: feature:523356-523408:-1:exon
so has part: feature:522308-522477:-1:exon
so has part: feature:519776-520328:-1:exon

position:533738:-1
position: 533738
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:533624-533738:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:531674-531791:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:531322-531345:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:531175-531207:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:530824-530940:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:529522-529653:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:528830-528958:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:528379-528453:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:526955-527041:-1:exon

position:526955:-1
position: 526955
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:527041:-1
position: 527041
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:525826-525867:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:524658-524730:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:524201-524239:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:523356-523408:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:522308-522477:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:519776-520328:-1:exon

PCBP2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: PCBP2
product: poly(rC) binding protein 2, transcript variant X12
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 ESTs, 1 long SRA read, 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 95 samples with support for all annotated introns
transcript id: XM_030259438.3
SIO_010081: PCBP2
subclass of: SO_0000673
so part of: PCBP2
location: complement(join(519776..520328,522308..522477,523356..523408,524658..524730,525826..525867,526715..526780,526955..527041,528379..528453,528830..528958,529522..529653,530824..530940,531175..531207,531322..531345,531674..531791,533624..533738))
location: region:519776-533738:-1
so has part: feature:533624-533738:-1:exon
so has part: feature:531674-531791:-1:exon
so has part: feature:531322-531345:-1:exon
so has part: feature:531175-531207:-1:exon
so has part: feature:530824-530940:-1:exon
so has part: feature:529522-529653:-1:exon
so has part: feature:528830-528958:-1:exon
so has part: feature:528379-528453:-1:exon
so has part: feature:526955-527041:-1:exon
so has part: feature:526715-526780:-1:exon
so has part: feature:525826-525867:-1:exon
so has part: feature:524658-524730:-1:exon
so has part: feature:523356-523408:-1:exon
so has part: feature:522308-522477:-1:exon
so has part: feature:519776-520328:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:533624-533738:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:531674-531791:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:531322-531345:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:531175-531207:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:530824-530940:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:529522-529653:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:528830-528958:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:528379-528453:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:526955-527041:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:526715-526780:-1:exon

position:526715:-1
position: 526715
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:526780:-1
position: 526780
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:525826-525867:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:524658-524730:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:523356-523408:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:522308-522477:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:519776-520328:-1:exon

PCBP2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: PCBP2
product: poly(rC) binding protein 2, transcript variant X11
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 ESTs, 1 long SRA read, 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 94 samples with support for all annotated introns
transcript id: XM_030259437.3
SIO_010081: PCBP2
subclass of: SO_0000673
so part of: PCBP2
location: complement(join(519776..520328,522308..522477,523356..523408,524201..524239,524658..524730,525826..525867,526715..526780,526955..527041,528379..528453,528830..528958,529522..529653,530824..530940,531175..531207,531322..531345,531674..531791,533624..533738))
location: region:519776-533738:-1
so has part: feature:533624-533738:-1:exon
so has part: feature:531674-531791:-1:exon
so has part: feature:531322-531345:-1:exon
so has part: feature:531175-531207:-1:exon
so has part: feature:530824-530940:-1:exon
so has part: feature:529522-529653:-1:exon
so has part: feature:528830-528958:-1:exon
so has part: feature:528379-528453:-1:exon
so has part: feature:526955-527041:-1:exon
so has part: feature:526715-526780:-1:exon
so has part: feature:525826-525867:-1:exon
so has part: feature:524658-524730:-1:exon
so has part: feature:524201-524239:-1:exon
so has part: feature:523356-523408:-1:exon
so has part: feature:522308-522477:-1:exon
so has part: feature:519776-520328:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:533624-533738:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:531674-531791:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:531322-531345:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:531175-531207:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:530824-530940:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:529522-529653:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:528830-528958:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:528379-528453:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:526955-527041:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:526715-526780:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:525826-525867:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:524658-524730:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:524201-524239:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:523356-523408:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:522308-522477:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:519776-520328:-1:exon

PCBP2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: PCBP2
product: poly(rC) binding protein 2, transcript variant X14
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 ESTs, 2 long SRA reads, 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 146 samples with support for all annotated introns
transcript id: XM_030259441.3
SIO_010081: PCBP2
subclass of: SO_0000673
so part of: PCBP2
location: complement(join(519776..520328,522308..522477,523356..523408,524658..524730,525826..525867,526955..527041,528379..528453,528830..528958,529522..529653,530824..530940,531175..531207,531322..531345,531674..531791,533624..533737))
location: region:519776-533737:-1
so has part: feature:533624-533737:-1:exon
so has part: feature:531674-531791:-1:exon
so has part: feature:531322-531345:-1:exon
so has part: feature:531175-531207:-1:exon
so has part: feature:530824-530940:-1:exon
so has part: feature:529522-529653:-1:exon
so has part: feature:528830-528958:-1:exon
so has part: feature:528379-528453:-1:exon
so has part: feature:526955-527041:-1:exon
so has part: feature:525826-525867:-1:exon
so has part: feature:524658-524730:-1:exon
so has part: feature:523356-523408:-1:exon
so has part: feature:522308-522477:-1:exon
so has part: feature:519776-520328:-1:exon

position:533737:-1
position: 533737
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:533624-533737:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:531674-531791:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:531322-531345:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:531175-531207:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:530824-530940:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:529522-529653:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:528830-528958:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:528379-528453:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:526955-527041:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:525826-525867:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:524658-524730:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:523356-523408:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:522308-522477:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:519776-520328:-1:exon

PCBP2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: PCBP2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: poly(rC)-binding protein 2 isoform X15
translation: MDTGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYRPKPSSSPVIFAGGQAYTIQGQYAIPQPDLTKLHQLAMQQSHFPMSHGNTGFSGVDSSSPEVKGYWGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSSETGGMGSS
SIO_010081: PCBP2
subclass of: SO_0000673
so part of: PCBP2
location: complement(join(520292..520328,522308..522477,523356..523408,524201..524239,524658..524730,525826..525867,528379..528453,528830..528958,529522..529653,530824..530940,531175..531207,531322..531345,531674..531742))
location: region:520292-531742:-1
so has part: feature:531674-531742:-1:exon
so has part: feature:531322-531345:-1:exon
so has part: feature:531175-531207:-1:exon
so has part: feature:530824-530940:-1:exon
so has part: feature:529522-529653:-1:exon
so has part: feature:528830-528958:-1:exon
so has part: feature:528379-528453:-1:exon
so has part: feature:525826-525867:-1:exon
so has part: feature:524658-524730:-1:exon
so has part: feature:524201-524239:-1:exon
so has part: feature:523356-523408:-1:exon
so has part: feature:522308-522477:-1:exon
so has part: feature:520292-520328:-1:exon

XP_030115303.1
type: Protein
SIO_000068: ncbiprotein

position:520292:-1
position: 520292
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:531742:-1
position: 531742
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:531674-531742:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:531322-531345:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:531175-531207:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:530824-530940:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:529522-529653:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:528830-528958:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:528379-528453:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:525826-525867:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:524658-524730:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:524201-524239:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:523356-523408:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:522308-522477:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:520292-520328:-1:exon

PCBP2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: PCBP2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: poly(rC)-binding protein 2 isoform X14
translation: MDTGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYRPKPSSSPVIFAGGQDRYSSGSASYPHTAPSMCLNSDLEGPPQEAYTIQGQYAIPQPDLTKLHQLAMQQSHFPMSHGNTGFSGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSSETGGMGSS
SIO_010081: PCBP2
subclass of: SO_0000673
so part of: PCBP2
location: complement(join(520292..520328,522308..522477,523356..523408,524658..524730,525826..525867,526955..527041,528379..528453,528830..528958,529522..529653,530824..530940,531175..531207,531322..531345,531674..531742))
location: region:520292-531742:-1
so has part: feature:531674-531742:-1:exon
so has part: feature:531322-531345:-1:exon
so has part: feature:531175-531207:-1:exon
so has part: feature:530824-530940:-1:exon
so has part: feature:529522-529653:-1:exon
so has part: feature:528830-528958:-1:exon
so has part: feature:528379-528453:-1:exon
so has part: feature:526955-527041:-1:exon
so has part: feature:525826-525867:-1:exon
so has part: feature:524658-524730:-1:exon
so has part: feature:523356-523408:-1:exon
so has part: feature:522308-522477:-1:exon
so has part: feature:520292-520328:-1:exon

XP_030115301.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:531674-531742:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:531322-531345:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:531175-531207:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:530824-530940:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:529522-529653:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:528830-528958:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:528379-528453:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:526955-527041:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:525826-525867:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:524658-524730:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:523356-523408:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:522308-522477:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:520292-520328:-1:exon

PCBP2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: PCBP2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: poly(rC)-binding protein 2 isoform X13
translation: MDTGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYRPKPSSSPVIFAGGQDRYSSGSASYPHTAPSMCLNSDLEGPPQEAYTIQGQYAIPQPDLTKLHQLAMQQSHFPMSHGNTGFSGVDSSSPEVKGYWGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSSETGGMGSS
SIO_010081: PCBP2
subclass of: SO_0000673
so part of: PCBP2
location: complement(join(520292..520328,522308..522477,523356..523408,524201..524239,524658..524730,525826..525867,526955..527041,528379..528453,528830..528958,529522..529653,530824..530940,531175..531207,531322..531345,531674..531742))
location: region:520292-531742:-1
so has part: feature:531674-531742:-1:exon
so has part: feature:531322-531345:-1:exon
so has part: feature:531175-531207:-1:exon
so has part: feature:530824-530940:-1:exon
so has part: feature:529522-529653:-1:exon
so has part: feature:528830-528958:-1:exon
so has part: feature:528379-528453:-1:exon
so has part: feature:526955-527041:-1:exon
so has part: feature:525826-525867:-1:exon
so has part: feature:524658-524730:-1:exon
so has part: feature:524201-524239:-1:exon
so has part: feature:523356-523408:-1:exon
so has part: feature:522308-522477:-1:exon
so has part: feature:520292-520328:-1:exon

XP_030115300.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:531674-531742:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:531322-531345:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:531175-531207:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:530824-530940:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:529522-529653:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:528830-528958:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:528379-528453:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:526955-527041:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:525826-525867:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:524658-524730:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:524201-524239:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:523356-523408:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:522308-522477:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:520292-520328:-1:exon

PCBP2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: PCBP2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: poly(rC)-binding protein 2 isoform X12
translation: MDTGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYRPKPSSSPVIFAGGQDRYSSGSASYPHTAPSMCLNSDLEGPPQEATRQPLHGNELGPIPAWAAVLPAYTIQGQYAIPQPDLTKLHQLAMQQSHFPMSHGNTGFSGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSSETGGMGSS
SIO_010081: PCBP2
subclass of: SO_0000673
so part of: PCBP2
location: complement(join(520292..520328,522308..522477,523356..523408,524658..524730,525826..525867,526715..526780,526955..527041,528379..528453,528830..528958,529522..529653,530824..530940,531175..531207,531322..531345,531674..531742))
location: region:520292-531742:-1
so has part: feature:531674-531742:-1:exon
so has part: feature:531322-531345:-1:exon
so has part: feature:531175-531207:-1:exon
so has part: feature:530824-530940:-1:exon
so has part: feature:529522-529653:-1:exon
so has part: feature:528830-528958:-1:exon
so has part: feature:528379-528453:-1:exon
so has part: feature:526955-527041:-1:exon
so has part: feature:526715-526780:-1:exon
so has part: feature:525826-525867:-1:exon
so has part: feature:524658-524730:-1:exon
so has part: feature:523356-523408:-1:exon
so has part: feature:522308-522477:-1:exon
so has part: feature:520292-520328:-1:exon

XP_030115298.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:531674-531742:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:531322-531345:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:531175-531207:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:530824-530940:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:529522-529653:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:528830-528958:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:528379-528453:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:526955-527041:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:526715-526780:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:525826-525867:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:524658-524730:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:523356-523408:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:522308-522477:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:520292-520328:-1:exon

PCBP2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: PCBP2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: poly(rC)-binding protein 2 isoform X11
translation: MDTGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYRPKPSSSPVIFAGGQDRYSSGSASYPHTAPSMCLNSDLEGPPQEATRQPLHGNELGPIPAWAAVLPAYTIQGQYAIPQPDLTKLHQLAMQQSHFPMSHGNTGFSGVDSSSPEVKGYWGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSSETGGMGSS
SIO_010081: PCBP2
subclass of: SO_0000673
so part of: PCBP2
location: complement(join(520292..520328,522308..522477,523356..523408,524201..524239,524658..524730,525826..525867,526715..526780,526955..527041,528379..528453,528830..528958,529522..529653,530824..530940,531175..531207,531322..531345,531674..531742))
location: region:520292-531742:-1
so has part: feature:531674-531742:-1:exon
so has part: feature:531322-531345:-1:exon
so has part: feature:531175-531207:-1:exon
so has part: feature:530824-530940:-1:exon
so has part: feature:529522-529653:-1:exon
so has part: feature:528830-528958:-1:exon
so has part: feature:528379-528453:-1:exon
so has part: feature:526955-527041:-1:exon
so has part: feature:526715-526780:-1:exon
so has part: feature:525826-525867:-1:exon
so has part: feature:524658-524730:-1:exon
so has part: feature:524201-524239:-1:exon
so has part: feature:523356-523408:-1:exon
so has part: feature:522308-522477:-1:exon
so has part: feature:520292-520328:-1:exon

XP_030115297.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:531674-531742:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:531322-531345:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:531175-531207:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:530824-530940:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:529522-529653:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:528830-528958:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:528379-528453:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:526955-527041:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:526715-526780:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:525826-525867:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:524658-524730:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:524201-524239:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:523356-523408:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:522308-522477:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:520292-520328:-1:exon

PCBP2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: PCBP2
product: poly(rC) binding protein 2, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 ESTs, 9 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments, including 93 samples with support for all annotated introns
transcript id: XM_030259428.3
SIO_010081: PCBP2
subclass of: SO_0000673
so part of: PCBP2
location: complement(join(520799..521618,522308..522477,523356..523408,524201..524239,524658..524730,525826..525867,526715..526780,526955..527041,528379..528453,528830..528958,529522..529653,530824..530940,531175..531207,531322..531345,531674..531791,533624..533774))
location: region:520799-533774:-1
so has part: feature:533624-533774:-1:exon
so has part: feature:531674-531791:-1:exon
so has part: feature:531322-531345:-1:exon
so has part: feature:531175-531207:-1:exon
so has part: feature:530824-530940:-1:exon
so has part: feature:529522-529653:-1:exon
so has part: feature:528830-528958:-1:exon
so has part: feature:528379-528453:-1:exon
so has part: feature:526955-527041:-1:exon
so has part: feature:526715-526780:-1:exon
so has part: feature:525826-525867:-1:exon
so has part: feature:524658-524730:-1:exon
so has part: feature:524201-524239:-1:exon
so has part: feature:523356-523408:-1:exon
so has part: feature:522308-522477:-1:exon
so has part: feature:520799-521618:-1:exon

position:520799:-1
position: 520799
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:533624-533774:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:531674-531791:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:531322-531345:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:531175-531207:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:530824-530940:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:529522-529653:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:528830-528958:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:528379-528453:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:526955-527041:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:526715-526780:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:525826-525867:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:524658-524730:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:524201-524239:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:523356-523408:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:522308-522477:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:520799-521618:-1:exon

position:521618:-1
position: 521618
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

PCBP2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: PCBP2
product: poly(rC) binding protein 2, transcript variant X10
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 ESTs, 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 122 samples with support for all annotated introns
transcript id: XM_030259436.3
SIO_010081: PCBP2
subclass of: SO_0000673
so part of: PCBP2
location: complement(join(520799..521618,522308..522477,523356..523408,524658..524730,528379..528453,528830..528958,529522..529653,530824..530940,531175..531207,531322..531345,531674..531791,533624..533739))
location: region:520799-533739:-1
so has part: feature:533624-533739:-1:exon
so has part: feature:531674-531791:-1:exon
so has part: feature:531322-531345:-1:exon
so has part: feature:531175-531207:-1:exon
so has part: feature:530824-530940:-1:exon
so has part: feature:529522-529653:-1:exon
so has part: feature:528830-528958:-1:exon
so has part: feature:528379-528453:-1:exon
so has part: feature:524658-524730:-1:exon
so has part: feature:523356-523408:-1:exon
so has part: feature:522308-522477:-1:exon
so has part: feature:520799-521618:-1:exon

position:533739:-1
position: 533739
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:533624-533739:-1:exon

urn:…
SIO_000300: 2
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urn:…
SIO_000300: 8
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urn:…
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urn:…
SIO_000300: 10
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urn:…
SIO_000300: 11
SIO_000628: feature:522308-522477:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:520799-521618:-1:exon

PCBP2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: PCBP2
product: poly(rC) binding protein 2, transcript variant X9
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 ESTs, 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 113 samples with support for all annotated introns
transcript id: XM_030259435.3
SIO_010081: PCBP2
subclass of: SO_0000673
so part of: PCBP2
location: complement(join(520799..521618,522308..522477,523356..523408,524201..524239,524658..524730,528379..528453,528830..528958,529522..529653,530824..530940,531175..531207,531322..531345,531674..531791,533624..533739))
location: region:520799-533739:-1
so has part: feature:533624-533739:-1:exon
so has part: feature:531674-531791:-1:exon
so has part: feature:531322-531345:-1:exon
so has part: feature:531175-531207:-1:exon
so has part: feature:530824-530940:-1:exon
so has part: feature:529522-529653:-1:exon
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urn:…
SIO_000300: 1
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urn:…
SIO_000300: 2
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SIO_000300: 3
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SIO_000300: 4
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urn:…
SIO_000300: 5
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urn:…
SIO_000300: 6
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urn:…
SIO_000300: 7
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urn:…
SIO_000300: 8
SIO_000628: feature:528379-528453:-1:exon

urn:…
SIO_000300: 9
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urn:…
SIO_000300: 10
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urn:…
SIO_000300: 11
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urn:…
SIO_000300: 12
SIO_000628: feature:522308-522477:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:520799-521618:-1:exon

PCBP2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: PCBP2
product: poly(rC) binding protein 2, transcript variant X8
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 ESTs, 9 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 133 samples with support for all annotated introns
transcript id: XM_032744910.2
SIO_010081: PCBP2
subclass of: SO_0000673
so part of: PCBP2
location: complement(join(520799..521618,522308..522477,523356..523408,524658..524730,525826..525867,528379..528453,528830..528958,529522..529653,530824..530940,531175..531207,531322..531345,531674..531791,533624..533739))
location: region:520799-533739:-1
so has part: feature:533624-533739:-1:exon
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urn:…
SIO_000300: 1
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SIO_000300: 2
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SIO_000300: 3
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SIO_000300: 4
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SIO_000300: 5
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SIO_000300: 6
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SIO_000300: 8
SIO_000628: feature:528379-528453:-1:exon

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SIO_000300: 9
SIO_000628: feature:525826-525867:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:524658-524730:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:523356-523408:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:522308-522477:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:520799-521618:-1:exon

PCBP2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: PCBP2
product: poly(rC) binding protein 2, transcript variant X7
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 ESTs, 9 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 124 samples with support for all annotated introns
transcript id: XM_030259434.3
SIO_010081: PCBP2
subclass of: SO_0000673
so part of: PCBP2
location: complement(join(520799..521618,522308..522477,523356..523408,524201..524239,524658..524730,525826..525867,528379..528453,528830..528958,529522..529653,530824..530940,531175..531207,531322..531345,531674..531791,533624..533739))
location: region:520799-533739:-1
so has part: feature:533624-533739:-1:exon
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so has part: feature:531322-531345:-1:exon
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urn:…
SIO_000300: 1
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urn:…
SIO_000300: 4
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urn:…
SIO_000300: 5
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urn:…
SIO_000300: 6
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SIO_000300: 7
SIO_000628: feature:528830-528958:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:528379-528453:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:525826-525867:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:524658-524730:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:524201-524239:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:523356-523408:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:522308-522477:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:520799-521618:-1:exon

PCBP2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: PCBP2
product: poly(rC) binding protein 2, transcript variant X6
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 ESTs, 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 128 samples with support for all annotated introns
transcript id: XM_030259433.3
SIO_010081: PCBP2
subclass of: SO_0000673
so part of: PCBP2
location: complement(join(520799..521618,522308..522477,523356..523408,524658..524730,526955..527041,528379..528453,528830..528958,529522..529653,530824..530940,531175..531207,531322..531345,531674..531791,533624..533739))
location: region:520799-533739:-1
so has part: feature:533624-533739:-1:exon
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so has part: feature:531175-531207:-1:exon
so has part: feature:530824-530940:-1:exon
so has part: feature:529522-529653:-1:exon
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urn:…
SIO_000300: 1
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urn:…
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urn:…
SIO_000300: 5
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urn:…
SIO_000300: 6
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urn:…
SIO_000300: 7
SIO_000628: feature:528830-528958:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:528379-528453:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:526955-527041:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:524658-524730:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:523356-523408:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:522308-522477:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:520799-521618:-1:exon

PCBP2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: PCBP2
product: poly(rC) binding protein 2, transcript variant X5
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 ESTs, 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 115 samples with support for all annotated introns
transcript id: XM_030259432.3
SIO_010081: PCBP2
subclass of: SO_0000673
so part of: PCBP2
location: complement(join(520799..521618,522308..522477,523356..523408,524201..524239,524658..524730,526955..527041,528379..528453,528830..528958,529522..529653,530824..530940,531175..531207,531322..531345,531674..531791,533624..533739))
location: region:520799-533739:-1
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urn:…
SIO_000300: 1
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urn:…
SIO_000300: 6
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urn:…
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SIO_000628: feature:524658-524730:-1:exon

urn:…
SIO_000300: 11
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urn:…
SIO_000300: 12
SIO_000628: feature:523356-523408:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:522308-522477:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:520799-521618:-1:exon

PCBP2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: PCBP2
product: poly(rC) binding protein 2, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 ESTs, 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 139 samples with support for all annotated introns
transcript id: XM_030259431.3
SIO_010081: PCBP2
subclass of: SO_0000673
so part of: PCBP2
location: complement(join(520799..521618,522308..522477,523356..523408,524658..524730,525826..525867,526955..527041,528379..528453,528830..528958,529522..529653,530824..530940,531175..531207,531322..531345,531674..531791,533624..533739))
location: region:520799-533739:-1
so has part: feature:533624-533739:-1:exon
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urn:…
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urn:…
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urn:…
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urn:…
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urn:…
SIO_000300: 14
SIO_000628: feature:520799-521618:-1:exon

PCBP2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: PCBP2
product: poly(rC) binding protein 2, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 ESTs, 9 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 124 samples with support for all annotated introns
transcript id: XM_030259430.3
SIO_010081: PCBP2
subclass of: SO_0000673
so part of: PCBP2
location: complement(join(520799..521618,522308..522477,523356..523408,524201..524239,524658..524730,525826..525867,526955..527041,528379..528453,528830..528958,529522..529653,530824..530940,531175..531207,531322..531345,531674..531791,533624..533739))
location: region:520799-533739:-1
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urn:…
SIO_000300: 1
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urn:…
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urn:…
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urn:…
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urn:…
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urn:…
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urn:…
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urn:…
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urn:…
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urn:…
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urn:…
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urn:…
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urn:…
SIO_000300: 15
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PCBP2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: PCBP2
product: poly(rC) binding protein 2, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 ESTs, 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 94 samples with support for all annotated introns
transcript id: XM_030259429.3
SIO_010081: PCBP2
subclass of: SO_0000673
so part of: PCBP2
location: complement(join(520799..521618,522308..522477,523356..523408,524658..524730,525826..525867,526715..526780,526955..527041,528379..528453,528830..528958,529522..529653,530824..530940,531175..531207,531322..531345,531674..531791,533624..533739))
location: region:520799-533739:-1
so has part: feature:533624-533739:-1:exon
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so has part: feature:522308-522477:-1:exon
so has part: feature:520799-521618:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:533624-533739:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:531674-531791:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:531322-531345:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:531175-531207:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:530824-530940:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:529522-529653:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:528830-528958:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:528379-528453:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:526955-527041:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:526715-526780:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:525826-525867:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:524658-524730:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:523356-523408:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:522308-522477:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:520799-521618:-1:exon

PCBP2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: PCBP2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: poly(rC)-binding protein 2 isoform X10
translation: MDTGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYRPKPSSSPVIFAGGQLTKLHQLAMQQSHFPMSHGNTGFSGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVSLESAKPSSQAASVTIPDHLSINLSQPSTPSSSSSSTTTPSLATAGASDAPSSLPNPLPTAPCVSSLLGMKPVPLLALNVVSAAKGAAAPAVPCVTNKLKAEKQRFSPY
SIO_010081: PCBP2
subclass of: SO_0000673
so part of: PCBP2
location: complement(join(521291..521618,522308..522477,523356..523408,524658..524730,528379..528453,528830..528958,529522..529653,530824..530940,531175..531207,531322..531345,531674..531742))
location: region:521291-531742:-1
so has part: feature:531674-531742:-1:exon
so has part: feature:531322-531345:-1:exon
so has part: feature:531175-531207:-1:exon
so has part: feature:530824-530940:-1:exon
so has part: feature:529522-529653:-1:exon
so has part: feature:528830-528958:-1:exon
so has part: feature:528379-528453:-1:exon
so has part: feature:524658-524730:-1:exon
so has part: feature:523356-523408:-1:exon
so has part: feature:522308-522477:-1:exon
so has part: feature:521291-521618:-1:exon

XP_030115296.1
type: Protein
SIO_000068: ncbiprotein

position:521291:-1
position: 521291
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:531674-531742:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:531322-531345:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:531175-531207:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:530824-530940:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:529522-529653:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:528830-528958:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:528379-528453:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:524658-524730:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:523356-523408:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:522308-522477:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:521291-521618:-1:exon

PCBP2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: PCBP2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: poly(rC)-binding protein 2 isoform X9
translation: MDTGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYRPKPSSSPVIFAGGQLTKLHQLAMQQSHFPMSHGNTGFSGVDSSSPEVKGYWGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVSLESAKPSSQAASVTIPDHLSINLSQPSTPSSSSSSTTTPSLATAGASDAPSSLPNPLPTAPCVSSLLGMKPVPLLALNVVSAAKGAAAPAVPCVTNKLKAEKQRFSPY
SIO_010081: PCBP2
subclass of: SO_0000673
so part of: PCBP2
location: complement(join(521291..521618,522308..522477,523356..523408,524201..524239,524658..524730,528379..528453,528830..528958,529522..529653,530824..530940,531175..531207,531322..531345,531674..531742))
location: region:521291-531742:-1
so has part: feature:531674-531742:-1:exon
so has part: feature:531322-531345:-1:exon
so has part: feature:531175-531207:-1:exon
so has part: feature:530824-530940:-1:exon
so has part: feature:529522-529653:-1:exon
so has part: feature:528830-528958:-1:exon
so has part: feature:528379-528453:-1:exon
so has part: feature:524658-524730:-1:exon
so has part: feature:524201-524239:-1:exon
so has part: feature:523356-523408:-1:exon
so has part: feature:522308-522477:-1:exon
so has part: feature:521291-521618:-1:exon

XP_030115295.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:531674-531742:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:531322-531345:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:531175-531207:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:530824-530940:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:529522-529653:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:528830-528958:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:528379-528453:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:524658-524730:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:524201-524239:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:523356-523408:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:522308-522477:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:521291-521618:-1:exon

PCBP2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: PCBP2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: poly(rC)-binding protein 2 isoform X8
translation: MDTGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYRPKPSSSPVIFAGGQAYTIQGQYAIPQPDLTKLHQLAMQQSHFPMSHGNTGFSGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVSLESAKPSSQAASVTIPDHLSINLSQPSTPSSSSSSTTTPSLATAGASDAPSSLPNPLPTAPCVSSLLGMKPVPLLALNVVSAAKGAAAPAVPCVTNKLKAEKQRFSPY
SIO_010081: PCBP2
subclass of: SO_0000673
so part of: PCBP2
location: complement(join(521291..521618,522308..522477,523356..523408,524658..524730,525826..525867,528379..528453,528830..528958,529522..529653,530824..530940,531175..531207,531322..531345,531674..531742))
location: region:521291-531742:-1
so has part: feature:531674-531742:-1:exon
so has part: feature:531322-531345:-1:exon
so has part: feature:531175-531207:-1:exon
so has part: feature:530824-530940:-1:exon
so has part: feature:529522-529653:-1:exon
so has part: feature:528830-528958:-1:exon
so has part: feature:528379-528453:-1:exon
so has part: feature:525826-525867:-1:exon
so has part: feature:524658-524730:-1:exon
so has part: feature:523356-523408:-1:exon
so has part: feature:522308-522477:-1:exon
so has part: feature:521291-521618:-1:exon

XP_032600801.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:531674-531742:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:531322-531345:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:531175-531207:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:530824-530940:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:529522-529653:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:528830-528958:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:528379-528453:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:525826-525867:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:524658-524730:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:523356-523408:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:522308-522477:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:521291-521618:-1:exon

PCBP2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: PCBP2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: poly(rC)-binding protein 2 isoform X7
translation: MDTGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYRPKPSSSPVIFAGGQAYTIQGQYAIPQPDLTKLHQLAMQQSHFPMSHGNTGFSGVDSSSPEVKGYWGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVSLESAKPSSQAASVTIPDHLSINLSQPSTPSSSSSSTTTPSLATAGASDAPSSLPNPLPTAPCVSSLLGMKPVPLLALNVVSAAKGAAAPAVPCVTNKLKAEKQRFSPY
SIO_010081: PCBP2
subclass of: SO_0000673
so part of: PCBP2
location: complement(join(521291..521618,522308..522477,523356..523408,524201..524239,524658..524730,525826..525867,528379..528453,528830..528958,529522..529653,530824..530940,531175..531207,531322..531345,531674..531742))
location: region:521291-531742:-1
so has part: feature:531674-531742:-1:exon
so has part: feature:531322-531345:-1:exon
so has part: feature:531175-531207:-1:exon
so has part: feature:530824-530940:-1:exon
so has part: feature:529522-529653:-1:exon
so has part: feature:528830-528958:-1:exon
so has part: feature:528379-528453:-1:exon
so has part: feature:525826-525867:-1:exon
so has part: feature:524658-524730:-1:exon
so has part: feature:524201-524239:-1:exon
so has part: feature:523356-523408:-1:exon
so has part: feature:522308-522477:-1:exon
so has part: feature:521291-521618:-1:exon

XP_030115294.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:531674-531742:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:531322-531345:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:531175-531207:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:530824-530940:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:529522-529653:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:528830-528958:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:528379-528453:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:525826-525867:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:524658-524730:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:524201-524239:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:523356-523408:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:522308-522477:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:521291-521618:-1:exon

PCBP2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: PCBP2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: poly(rC)-binding protein 2 isoform X6
translation: MDTGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYRPKPSSSPVIFAGGQDRYSSGSASYPHTAPSMCLNSDLEGPPQELTKLHQLAMQQSHFPMSHGNTGFSGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVSLESAKPSSQAASVTIPDHLSINLSQPSTPSSSSSSTTTPSLATAGASDAPSSLPNPLPTAPCVSSLLGMKPVPLLALNVVSAAKGAAAPAVPCVTNKLKAEKQRFSPY
SIO_010081: PCBP2
subclass of: SO_0000673
so part of: PCBP2
location: complement(join(521291..521618,522308..522477,523356..523408,524658..524730,526955..527041,528379..528453,528830..528958,529522..529653,530824..530940,531175..531207,531322..531345,531674..531742))
location: region:521291-531742:-1
so has part: feature:531674-531742:-1:exon
so has part: feature:531322-531345:-1:exon
so has part: feature:531175-531207:-1:exon
so has part: feature:530824-530940:-1:exon
so has part: feature:529522-529653:-1:exon
so has part: feature:528830-528958:-1:exon
so has part: feature:528379-528453:-1:exon
so has part: feature:526955-527041:-1:exon
so has part: feature:524658-524730:-1:exon
so has part: feature:523356-523408:-1:exon
so has part: feature:522308-522477:-1:exon
so has part: feature:521291-521618:-1:exon

XP_030115293.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:531674-531742:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:531322-531345:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:531175-531207:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:530824-530940:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:529522-529653:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:528830-528958:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:528379-528453:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:526955-527041:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:524658-524730:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:523356-523408:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:522308-522477:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:521291-521618:-1:exon

PCBP2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: PCBP2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: poly(rC)-binding protein 2 isoform X5
translation: MDTGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYRPKPSSSPVIFAGGQDRYSSGSASYPHTAPSMCLNSDLEGPPQELTKLHQLAMQQSHFPMSHGNTGFSGVDSSSPEVKGYWGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVSLESAKPSSQAASVTIPDHLSINLSQPSTPSSSSSSTTTPSLATAGASDAPSSLPNPLPTAPCVSSLLGMKPVPLLALNVVSAAKGAAAPAVPCVTNKLKAEKQRFSPY
SIO_010081: PCBP2
subclass of: SO_0000673
so part of: PCBP2
location: complement(join(521291..521618,522308..522477,523356..523408,524201..524239,524658..524730,526955..527041,528379..528453,528830..528958,529522..529653,530824..530940,531175..531207,531322..531345,531674..531742))
location: region:521291-531742:-1
so has part: feature:531674-531742:-1:exon
so has part: feature:531322-531345:-1:exon
so has part: feature:531175-531207:-1:exon
so has part: feature:530824-530940:-1:exon
so has part: feature:529522-529653:-1:exon
so has part: feature:528830-528958:-1:exon
so has part: feature:528379-528453:-1:exon
so has part: feature:526955-527041:-1:exon
so has part: feature:524658-524730:-1:exon
so has part: feature:524201-524239:-1:exon
so has part: feature:523356-523408:-1:exon
so has part: feature:522308-522477:-1:exon
so has part: feature:521291-521618:-1:exon

XP_030115292.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:531674-531742:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:531322-531345:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:531175-531207:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:530824-530940:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:529522-529653:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:528830-528958:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:528379-528453:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:526955-527041:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:524658-524730:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:524201-524239:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:523356-523408:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:522308-522477:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:521291-521618:-1:exon

PCBP2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: PCBP2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: poly(rC)-binding protein 2 isoform X4
translation: MDTGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYRPKPSSSPVIFAGGQDRYSSGSASYPHTAPSMCLNSDLEGPPQEAYTIQGQYAIPQPDLTKLHQLAMQQSHFPMSHGNTGFSGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVSLESAKPSSQAASVTIPDHLSINLSQPSTPSSSSSSTTTPSLATAGASDAPSSLPNPLPTAPCVSSLLGMKPVPLLALNVVSAAKGAAAPAVPCVTNKLKAEKQRFSPY
SIO_010081: PCBP2
subclass of: SO_0000673
so part of: PCBP2
location: complement(join(521291..521618,522308..522477,523356..523408,524658..524730,525826..525867,526955..527041,528379..528453,528830..528958,529522..529653,530824..530940,531175..531207,531322..531345,531674..531742))
location: region:521291-531742:-1
so has part: feature:531674-531742:-1:exon
so has part: feature:531322-531345:-1:exon
so has part: feature:531175-531207:-1:exon
so has part: feature:530824-530940:-1:exon
so has part: feature:529522-529653:-1:exon
so has part: feature:528830-528958:-1:exon
so has part: feature:528379-528453:-1:exon
so has part: feature:526955-527041:-1:exon
so has part: feature:525826-525867:-1:exon
so has part: feature:524658-524730:-1:exon
so has part: feature:523356-523408:-1:exon
so has part: feature:522308-522477:-1:exon
so has part: feature:521291-521618:-1:exon

XP_030115291.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:531674-531742:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:531322-531345:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:531175-531207:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:530824-530940:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:529522-529653:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:528830-528958:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:528379-528453:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:526955-527041:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:525826-525867:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:524658-524730:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:523356-523408:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:522308-522477:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:521291-521618:-1:exon

PCBP2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: PCBP2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: poly(rC)-binding protein 2 isoform X3
translation: MDTGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYRPKPSSSPVIFAGGQDRYSSGSASYPHTAPSMCLNSDLEGPPQEAYTIQGQYAIPQPDLTKLHQLAMQQSHFPMSHGNTGFSGVDSSSPEVKGYWGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVSLESAKPSSQAASVTIPDHLSINLSQPSTPSSSSSSTTTPSLATAGASDAPSSLPNPLPTAPCVSSLLGMKPVPLLALNVVSAAKGAAAPAVPCVTNKLKAEKQRFSPY
SIO_010081: PCBP2
subclass of: SO_0000673
so part of: PCBP2
location: complement(join(521291..521618,522308..522477,523356..523408,524201..524239,524658..524730,525826..525867,526955..527041,528379..528453,528830..528958,529522..529653,530824..530940,531175..531207,531322..531345,531674..531742))
location: region:521291-531742:-1
so has part: feature:531674-531742:-1:exon
so has part: feature:531322-531345:-1:exon
so has part: feature:531175-531207:-1:exon
so has part: feature:530824-530940:-1:exon
so has part: feature:529522-529653:-1:exon
so has part: feature:528830-528958:-1:exon
so has part: feature:528379-528453:-1:exon
so has part: feature:526955-527041:-1:exon
so has part: feature:525826-525867:-1:exon
so has part: feature:524658-524730:-1:exon
so has part: feature:524201-524239:-1:exon
so has part: feature:523356-523408:-1:exon
so has part: feature:522308-522477:-1:exon
so has part: feature:521291-521618:-1:exon

XP_030115290.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:531674-531742:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:531322-531345:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:531175-531207:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:530824-530940:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:529522-529653:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:528830-528958:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:528379-528453:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:526955-527041:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:525826-525867:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:524658-524730:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:524201-524239:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:523356-523408:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:522308-522477:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:521291-521618:-1:exon

PCBP2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: PCBP2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: poly(rC)-binding protein 2 isoform X2
translation: MDTGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYRPKPSSSPVIFAGGQDRYSSGSASYPHTAPSMCLNSDLEGPPQEATRQPLHGNELGPIPAWAAVLPAYTIQGQYAIPQPDLTKLHQLAMQQSHFPMSHGNTGFSGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVSLESAKPSSQAASVTIPDHLSINLSQPSTPSSSSSSTTTPSLATAGASDAPSSLPNPLPTAPCVSSLLGMKPVPLLALNVVSAAKGAAAPAVPCVTNKLKAEKQRFSPY
SIO_010081: PCBP2
subclass of: SO_0000673
so part of: PCBP2
location: complement(join(521291..521618,522308..522477,523356..523408,524658..524730,525826..525867,526715..526780,526955..527041,528379..528453,528830..528958,529522..529653,530824..530940,531175..531207,531322..531345,531674..531742))
location: region:521291-531742:-1
so has part: feature:531674-531742:-1:exon
so has part: feature:531322-531345:-1:exon
so has part: feature:531175-531207:-1:exon
so has part: feature:530824-530940:-1:exon
so has part: feature:529522-529653:-1:exon
so has part: feature:528830-528958:-1:exon
so has part: feature:528379-528453:-1:exon
so has part: feature:526955-527041:-1:exon
so has part: feature:526715-526780:-1:exon
so has part: feature:525826-525867:-1:exon
so has part: feature:524658-524730:-1:exon
so has part: feature:523356-523408:-1:exon
so has part: feature:522308-522477:-1:exon
so has part: feature:521291-521618:-1:exon

XP_030115289.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:531674-531742:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:531322-531345:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:531175-531207:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:530824-530940:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:529522-529653:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:528830-528958:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:528379-528453:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:526955-527041:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:526715-526780:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:525826-525867:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:524658-524730:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:523356-523408:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:522308-522477:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:521291-521618:-1:exon

PCBP2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: PCBP2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: poly(rC)-binding protein 2 isoform X1
translation: MDTGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYRPKPSSSPVIFAGGQDRYSSGSASYPHTAPSMCLNSDLEGPPQEATRQPLHGNELGPIPAWAAVLPAYTIQGQYAIPQPDLTKLHQLAMQQSHFPMSHGNTGFSGVDSSSPEVKGYWGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVSLESAKPSSQAASVTIPDHLSINLSQPSTPSSSSSSTTTPSLATAGASDAPSSLPNPLPTAPCVSSLLGMKPVPLLALNVVSAAKGAAAPAVPCVTNKLKAEKQRFSPY
SIO_010081: PCBP2
subclass of: SO_0000673
so part of: PCBP2
location: complement(join(521291..521618,522308..522477,523356..523408,524201..524239,524658..524730,525826..525867,526715..526780,526955..527041,528379..528453,528830..528958,529522..529653,530824..530940,531175..531207,531322..531345,531674..531742))
location: region:521291-531742:-1
so has part: feature:531674-531742:-1:exon
so has part: feature:531322-531345:-1:exon
so has part: feature:531175-531207:-1:exon
so has part: feature:530824-530940:-1:exon
so has part: feature:529522-529653:-1:exon
so has part: feature:528830-528958:-1:exon
so has part: feature:528379-528453:-1:exon
so has part: feature:526955-527041:-1:exon
so has part: feature:526715-526780:-1:exon
so has part: feature:525826-525867:-1:exon
so has part: feature:524658-524730:-1:exon
so has part: feature:524201-524239:-1:exon
so has part: feature:523356-523408:-1:exon
so has part: feature:522308-522477:-1:exon
so has part: feature:521291-521618:-1:exon

XP_030115288.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:531674-531742:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:531322-531345:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:531175-531207:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:530824-530940:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:529522-529653:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:528830-528958:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:528379-528453:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:526955-527041:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:526715-526780:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:525826-525867:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:524658-524730:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:524201-524239:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:523356-523408:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:522308-522477:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:521291-521618:-1:exon

PRR13
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: PRR13
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(534260..535261)
location: region:534260-535261:-1
so has part: feature:534260-535261:-1:exon
subclass of: SO_0000010

121468246
type: Gene
SIO_000068: ncbigene

position:534260:-1
position: 534260
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:535261:-1
position: 535261
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:534260-535261:-1:exon

PRR13
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: PRR13
product: proline rich 13
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 17 samples with support for all annotated introns
transcript id: XM_041711595.1
SIO_010081: PRR13
subclass of: SO_0000673
so part of: PRR13
location: complement(join(534260..534503,534584..534918,535007..535043,535195..535261))
location: region:534260-535261:-1
so has part: feature:535195-535261:-1:exon
so has part: feature:535007-535043:-1:exon
so has part: feature:534584-534918:-1:exon
so has part: feature:534260-534503:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:535195-535261:-1:exon

position:535195:-1
position: 535195
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:535007-535043:-1:exon

position:535007:-1
position: 535007
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:535043:-1
position: 535043
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:534584-534918:-1:exon

position:534584:-1
position: 534584
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:534918:-1
position: 534918
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:534260-534503:-1:exon

position:534503:-1
position: 534503
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

PRR13
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: PRR13
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: proline-rich protein 13
translation: MWNPGAGQPPPPNPAYPPNPTYPPQVPPPNPVYPPPVAPPNPMGVPGQPPYPAGVPPYPPGPPLAPSGPPLGPPHPGVLPHPGVLPHPGVLPSFPPGLDKKAAKKMKKRMKKAHKRHKRSSSSSSSSSSSSSD
SIO_010081: PRR13
subclass of: SO_0000673
so part of: PRR13
location: complement(join(534456..534503,534584..534918,535007..535025))
location: region:534456-535025:-1
so has part: feature:535007-535025:-1:exon
so has part: feature:534584-534918:-1:exon
so has part: feature:534456-534503:-1:exon

XP_041567529.1
type: Protein
SIO_000068: ncbiprotein

position:534456:-1
position: 534456
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:535025:-1
position: 535025
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:535007-535025:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:534584-534918:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:534456-534503:-1:exon

AMHR2
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: AMHR2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(535362..541590)
location: region:535362-541590:-1
so has part: feature:535362-541590:-1:exon
subclass of: SO_0000010

115491337
type: Gene
SIO_000068: ncbigene

position:535362:-1
position: 535362
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:541590:-1
position: 541590
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:535362-541590:-1:exon

AMHR2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: AMHR2
product: anti-Mullerian hormone receptor type 2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 96% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XM_041711488.1
SIO_010081: AMHR2
subclass of: SO_0000673
so part of: AMHR2
location: complement(join(535362..535601,536174..536310,536670..536817,537084..537244,537339..537453,538092..538316,539092..539201,539727..539816,540218..540388,541297..541446,541530..541590))
location: region:535362-541590:-1
so has part: feature:541530-541590:-1:exon
so has part: feature:541297-541446:-1:exon
so has part: feature:540218-540388:-1:exon
so has part: feature:539727-539816:-1:exon
so has part: feature:539092-539201:-1:exon
so has part: feature:538092-538316:-1:exon
so has part: feature:537339-537453:-1:exon
so has part: feature:537084-537244:-1:exon
so has part: feature:536670-536817:-1:exon
so has part: feature:536174-536310:-1:exon
so has part: feature:535362-535601:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:541530-541590:-1:exon

position:541530:-1
position: 541530
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:541297-541446:-1:exon

position:541297:-1
position: 541297
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:541446:-1
position: 541446
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:540218-540388:-1:exon

position:540218:-1
position: 540218
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:540388:-1
position: 540388
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:539727-539816:-1:exon

position:539727:-1
position: 539727
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:539816:-1
position: 539816
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:539092-539201:-1:exon

position:539092:-1
position: 539092
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:539201:-1
position: 539201
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:538092-538316:-1:exon

position:538092:-1
position: 538092
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:538316:-1
position: 538316
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:537339-537453:-1:exon

position:537339:-1
position: 537339
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:537453:-1
position: 537453
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:537084-537244:-1:exon

position:537084:-1
position: 537084
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:537244:-1
position: 537244
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:536670-536817:-1:exon

position:536670:-1
position: 536670
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:536817:-1
position: 536817
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:536174-536310:-1:exon

position:536174:-1
position: 536174
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:536310:-1
position: 536310
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:535362-535601:-1:exon

position:535601:-1
position: 535601
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

AMHR2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: AMHR2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: anti-Muellerian hormone type-2 receptor
translation: MGHPGPHNLTCVSYKHPSVRGALGGAGGTAAGAVRCPPGQCCVGIWNRSHALVQGCWGGRGDACPSATCAPSPAGHPGSSVLLCLCHGHLCNGNATGTGTAGGPGGPRQGPVPGQGGSAGTLWLLGAAPLLLILLVCLGGLGLRWTRARPGQLPRGGRRIGVPPEPPSPDLPALHFLQVLQAGRFSAVWRGSLRRRPVAIKAFAAGAGRRFRAERAVHALPLMEHQNVARLLHSRTGGPRGRAGLLVLQLYPAGSLRHFLGQHVGTWAGSVRLALSLARGLAFLHQELWRDGLYKPSVVHRDLSSQNVLVRDDGTCAIGDFGLALALPPRAQDSSDSRHAVAIRKAGTQRYLAPEILDESLDLRAWGRALRQADVYALALLLWEILSRCQALSPGAPVPPFRLAYEAELGSSPSGAQLRRLAAHERRRPLIPPAWHRAPQPGGALPELLEDCWDPDPEARLSAERALQRLQRLAAGPAPAPAPAPAPGEPGPGTAPREVRGETEARGGDREPTGDLWGN
SIO_010081: AMHR2
subclass of: SO_0000673
so part of: AMHR2
location: complement(join(535362..535601,536174..536310,536670..536817,537084..537244,537339..537453,538092..538316,539092..539201,539727..539816,540218..540388,541297..541446,541530..541542))
location: region:535362-541542:-1
so has part: feature:541530-541542:-1:exon
so has part: feature:541297-541446:-1:exon
so has part: feature:540218-540388:-1:exon
so has part: feature:539727-539816:-1:exon
so has part: feature:539092-539201:-1:exon
so has part: feature:538092-538316:-1:exon
so has part: feature:537339-537453:-1:exon
so has part: feature:537084-537244:-1:exon
so has part: feature:536670-536817:-1:exon
so has part: feature:536174-536310:-1:exon
so has part: feature:535362-535601:-1:exon

XP_041567422.1
type: Protein
SIO_000068: ncbiprotein

position:541542:-1
position: 541542
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:541530-541542:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:541297-541446:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:540218-540388:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:539727-539816:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:539092-539201:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:538092-538316:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:537339-537453:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:537084-537244:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:536670-536817:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:536174-536310:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:535362-535601:-1:exon

SP1
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: SP1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(544908..557474)
location: region:544908-557474:-1
so has part: feature:544908-557474:-1:exon
subclass of: SO_0000010

115491349
type: Gene
SIO_000068: ncbigene

position:544908:-1
position: 544908
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:557474:-1
position: 557474
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:544908-557474:-1:exon

SP1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: SP1
product: Sp1 transcription factor, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 ESTs, 15 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 68 samples with support for all annotated introns
transcript id: XM_041711532.1
SIO_010081: SP1
subclass of: SO_0000673
so part of: SP1
location: complement(join(544908..546147,546516..546715,547016..547184,554127..555630,556271..556365,557382..557474))
location: region:544908-557474:-1
so has part: feature:557382-557474:-1:exon
so has part: feature:556271-556365:-1:exon
so has part: feature:554127-555630:-1:exon
so has part: feature:547016-547184:-1:exon
so has part: feature:546516-546715:-1:exon
so has part: feature:544908-546147:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:557382-557474:-1:exon

position:557382:-1
position: 557382
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:556271-556365:-1:exon

position:556271:-1
position: 556271
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:556365:-1
position: 556365
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:554127-555630:-1:exon

position:554127:-1
position: 554127
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:555630:-1
position: 555630
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:547016-547184:-1:exon

position:547016:-1
position: 547016
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:547184:-1
position: 547184
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:546516-546715:-1:exon

position:546516:-1
position: 546516
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:546715:-1
position: 546715
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:544908-546147:-1:exon

position:546147:-1
position: 546147
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

SP1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: SP1
product: Sp1 transcription factor, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 ESTs, 15 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 69 samples with support for all annotated introns
transcript id: XM_030259201.3
SIO_010081: SP1
subclass of: SO_0000673
so part of: SP1
location: complement(join(544908..546147,546516..546715,547016..547184,554127..555630,556271..556365,556668..556947))
location: region:544908-556947:-1
so has part: feature:556668-556947:-1:exon
so has part: feature:556271-556365:-1:exon
so has part: feature:554127-555630:-1:exon
so has part: feature:547016-547184:-1:exon
so has part: feature:546516-546715:-1:exon
so has part: feature:544908-546147:-1:exon

position:556947:-1
position: 556947
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:556668-556947:-1:exon

position:556668:-1
position: 556668
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:556271-556365:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:554127-555630:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:547016-547184:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:546516-546715:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:544908-546147:-1:exon

SP1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: SP1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: transcription factor Sp1 isoform X1
translation: MSDQESTEEMSAVKPDKGEGDASSTSSGGGGEAQESQPSPLALLAATCSRIESPNENSNSSQGQQGGSGELDLNAAAAQLTQSANGWQIISAGSSTPTGSKEPGSNGSNGGDASKSRPVSTGPYVVTSASGLQNQQVLTGLPGVIPNIQYQVIPQFQTIDGQQLQFATTPAQVNVQQDASGQLQIIPGSNQQIITSRAGGSNLIAMPNLLQQAVPIQGVGLANNSLSGQTQYVANVPVALNGNITLLPVNSVAASLAPTSQTGTLSSSGSPDSSSQPATSGAASSSGSTATSQASSGAFFTNANSYSTTTTTSNVGVMNFSTSATVGTNVQAQTPQRASSVPSSDSLQSPVSGVALQPGQQKEGDQSQQSQQQQQQQQILIQPQLVQGGQTIQALQTTPLSGQTFATQAISQDTLQNLQLQAVPNSGPIIIRTPTVGPNGQVSWQTIQLQNLQVQNPQAQTITLAPMQGVSLGQTGSTSTTLTPIASLPSGTVTVNAAQLSSVPGLQTINLSALGASGIQVHQLQGLPLAIANAPGEHGAQLGLHGGSGDGLGDESAAVEEGETSPDPQPQQGRKTRREACTCPYCKEGEGRSSGDPGKKKQHICHVPGCGKVYGKTSHLRAHLRWHTGERPFICTWVLCGKRFTRSDELQRHKRTHTGEKKFACPECPKRFMRSDHLSKHIKTHQNKKGGAAGVAMNVSAVPLDSAAAAEGGGGGATPSALIATNMVAMEAICPEGIARLASSGINVMQVADLQSINISGNGF
SIO_010081: SP1
subclass of: SO_0000673
so part of: SP1
location: complement(join(545828..546147,546516..546715,547016..547184,554127..555630,556271..556365,557382..557388))
location: region:545828-557388:-1
so has part: feature:557382-557388:-1:exon
so has part: feature:556271-556365:-1:exon
so has part: feature:554127-555630:-1:exon
so has part: feature:547016-547184:-1:exon
so has part: feature:546516-546715:-1:exon
so has part: feature:545828-546147:-1:exon

XP_041567466.1
type: Protein
SIO_000068: ncbiprotein

position:545828:-1
position: 545828
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:557388:-1
position: 557388
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:557382-557388:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:556271-556365:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:554127-555630:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:547016-547184:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:546516-546715:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:545828-546147:-1:exon

SP1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: SP1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: transcription factor Sp1 isoform X2
translation: MSAVKPDKGEGDASSTSSGGGGEAQESQPSPLALLAATCSRIESPNENSNSSQGQQGGSGELDLNAAAAQLTQSANGWQIISAGSSTPTGSKEPGSNGSNGGDASKSRPVSTGPYVVTSASGLQNQQVLTGLPGVIPNIQYQVIPQFQTIDGQQLQFATTPAQVNVQQDASGQLQIIPGSNQQIITSRAGGSNLIAMPNLLQQAVPIQGVGLANNSLSGQTQYVANVPVALNGNITLLPVNSVAASLAPTSQTGTLSSSGSPDSSSQPATSGAASSSGSTATSQASSGAFFTNANSYSTTTTTSNVGVMNFSTSATVGTNVQAQTPQRASSVPSSDSLQSPVSGVALQPGQQKEGDQSQQSQQQQQQQQILIQPQLVQGGQTIQALQTTPLSGQTFATQAISQDTLQNLQLQAVPNSGPIIIRTPTVGPNGQVSWQTIQLQNLQVQNPQAQTITLAPMQGVSLGQTGSTSTTLTPIASLPSGTVTVNAAQLSSVPGLQTINLSALGASGIQVHQLQGLPLAIANAPGEHGAQLGLHGGSGDGLGDESAAVEEGETSPDPQPQQGRKTRREACTCPYCKEGEGRSSGDPGKKKQHICHVPGCGKVYGKTSHLRAHLRWHTGERPFICTWVLCGKRFTRSDELQRHKRTHTGEKKFACPECPKRFMRSDHLSKHIKTHQNKKGGAAGVAMNVSAVPLDSAAAAEGGGGGATPSALIATNMVAMEAICPEGIARLASSGINVMQVADLQSINISGNGF
SIO_010081: SP1
subclass of: SO_0000673
so part of: SP1
location: complement(join(545828..546147,546516..546715,547016..547184,554127..555630,556271..556345))
location: region:545828-556345:-1
so has part: feature:556271-556345:-1:exon
so has part: feature:554127-555630:-1:exon
so has part: feature:547016-547184:-1:exon
so has part: feature:546516-546715:-1:exon
so has part: feature:545828-546147:-1:exon

XP_030115061.3
type: Protein
SIO_000068: ncbiprotein

position:556345:-1
position: 556345
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:556271-556345:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:554127-555630:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:547016-547184:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:546516-546715:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:545828-546147:-1:exon

SP7
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: SP7
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 565582..566976
location: region:565582-566976:1
so has part: feature:565582-566976:1:exon
subclass of: SO_0000010

115491429
type: Gene
SIO_000068: ncbigene

position:565582:1
position: 565582
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:566976:1
position: 566976
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:565582-566976:1:exon

SP7
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: SP7
product: Sp7 transcription factor
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 15 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_030259494.3
SIO_010081: SP7
subclass of: SO_0000673
so part of: SP7
location: 565582..566976
location: region:565582-566976:1
so has part: feature:565582-566976:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:565582-566976:1:exon

SP7
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: SP7
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: transcription factor Sp7
translation: MGDSYAAAFPSAPGLLSPSASPQASPGPYGPDYGPFGHPFPAPSGAQEVLGAPVVVATKGHPAGECLPGVYPSLEMPHPYGSWYKGGIGGGLPGGSGPAAPSWWDVHPNGGWLGGPGGAEGLQGSLQAQPALSPPLPAYGSDFGALNPPPYSGAPAAPPGTPKGAPGSPPKGPRGGSLGARPACDCPNCQELERLGGAGAARRKAVHSCHIPGCGKVYGKASHLKAHLRWHTGERPFVCNWLFCGKRFTRSDELERHVRTHTREKKFTCLLCSKRFTRSDHLSKHQKTHGEPGPPKPPPGPEQPPASPRPPPASAEPAKDGGSPEAGTLLEI
SIO_010081: SP7
subclass of: SO_0000673
so part of: SP7
location: 565788..566786
location: region:565788-566786:1
so has part: feature:565788-566786:1:exon

XP_030115354.3
type: Protein
SIO_000068: ncbiprotein

position:565788:1
position: 565788
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:566786:1
position: 566786
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:565788-566786:1:exon

AAAS
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: AAAS
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 569494..576776
location: region:569494-576776:1
so has part: feature:569494-576776:1:exon
subclass of: SO_0000010

100218436
type: Gene
SIO_000068: ncbigene

position:569494:1
position: 569494
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:576776:1
position: 576776
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:569494-576776:1:exon

AAAS
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: AAAS
product: aladin WD repeat nucleoporin, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 22 samples with support for all annotated introns
transcript id: XM_041711582.1
SIO_010081: AAAS
subclass of: SO_0000673
so part of: AAAS
location: join(569494..569740,569903..570030,571083..571138,571294..571385,571578..571624,572012..572110,572370..572519,572678..572821,573099..573219,573352..573476,573645..573705,574221..574311,574658..574751,574864..574931,575023..575104,576064..576148,576401..576547,576621..576776)
location: region:569494-576776:1
so has part: feature:569494-569740:1:exon
so has part: feature:569903-570030:1:exon
so has part: feature:571083-571138:1:exon
so has part: feature:571294-571385:1:exon
so has part: feature:571578-571624:1:exon
so has part: feature:572012-572110:1:exon
so has part: feature:572370-572519:1:exon
so has part: feature:572678-572821:1:exon
so has part: feature:573099-573219:1:exon
so has part: feature:573352-573476:1:exon
so has part: feature:573645-573705:1:exon
so has part: feature:574221-574311:1:exon
so has part: feature:574658-574751:1:exon
so has part: feature:574864-574931:1:exon
so has part: feature:575023-575104:1:exon
so has part: feature:576064-576148:1:exon
so has part: feature:576401-576547:1:exon
so has part: feature:576621-576776:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:569494-569740:1:exon

position:569740:1
position: 569740
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:569903-570030:1:exon

position:569903:1
position: 569903
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:570030:1
position: 570030
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:571083-571138:1:exon

position:571083:1
position: 571083
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:571138:1
position: 571138
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:571294-571385:1:exon

position:571294:1
position: 571294
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:571385:1
position: 571385
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:571578-571624:1:exon

position:571578:1
position: 571578
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:571624:1
position: 571624
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:572012-572110:1:exon

position:572012:1
position: 572012
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:572110:1
position: 572110
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:572370-572519:1:exon

position:572370:1
position: 572370
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:572519:1
position: 572519
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:572678-572821:1:exon

position:572678:1
position: 572678
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:572821:1
position: 572821
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:573099-573219:1:exon

position:573099:1
position: 573099
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:573219:1
position: 573219
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:573352-573476:1:exon

position:573352:1
position: 573352
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:573476:1
position: 573476
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:573645-573705:1:exon

position:573645:1
position: 573645
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:573705:1
position: 573705
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:574221-574311:1:exon

position:574221:1
position: 574221
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:574311:1
position: 574311
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:574658-574751:1:exon

position:574658:1
position: 574658
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:574751:1
position: 574751
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:574864-574931:1:exon

position:574864:1
position: 574864
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:574931:1
position: 574931
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:575023-575104:1:exon

position:575023:1
position: 575023
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:575104:1
position: 575104
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:576064-576148:1:exon

position:576064:1
position: 576064
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:576148:1
position: 576148
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:576401-576547:1:exon

position:576401:1
position: 576401
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:576547:1
position: 576547
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:576621-576776:1:exon

position:576621:1
position: 576621
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

AAAS
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: AAAS
product: aladin WD repeat nucleoporin, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 31 samples with support for all annotated introns
transcript id: XM_041711583.1
SIO_010081: AAAS
subclass of: SO_0000673
so part of: AAAS
location: join(569494..569740,569903..570030,571083..571138,571294..571385,571578..571624,572012..572110,572370..572519,572678..572821,573099..573219,573352..573476,573645..573705,574221..574311,574658..574751,574864..574931,575023..575104,576064..576148,576401..576547,576693..576776)
location: region:569494-576776:1
so has part: feature:569494-569740:1:exon
so has part: feature:569903-570030:1:exon
so has part: feature:571083-571138:1:exon
so has part: feature:571294-571385:1:exon
so has part: feature:571578-571624:1:exon
so has part: feature:572012-572110:1:exon
so has part: feature:572370-572519:1:exon
so has part: feature:572678-572821:1:exon
so has part: feature:573099-573219:1:exon
so has part: feature:573352-573476:1:exon
so has part: feature:573645-573705:1:exon
so has part: feature:574221-574311:1:exon
so has part: feature:574658-574751:1:exon
so has part: feature:574864-574931:1:exon
so has part: feature:575023-575104:1:exon
so has part: feature:576064-576148:1:exon
so has part: feature:576401-576547:1:exon
so has part: feature:576693-576776:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:569494-569740:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:569903-570030:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:571083-571138:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:571294-571385:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:571578-571624:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:572012-572110:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:572370-572519:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:572678-572821:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:573099-573219:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:573352-573476:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:573645-573705:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:574221-574311:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:574658-574751:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:574864-574931:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:575023-575104:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:576064-576148:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:576401-576547:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:576693-576776:1:exon

position:576693:1
position: 576693
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

AAAS
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: AAAS
product: aladin WD repeat nucleoporin, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XM_041711584.1
SIO_010081: AAAS
subclass of: SO_0000673
so part of: AAAS
location: join(569495..569740,569903..570030,571083..571138,571294..571385,571578..571624,572012..572110,572678..572821,573099..573219,573352..573476,573645..573705,574221..574311,574658..574751,574864..574931,575023..575104,576064..576148,576401..576565,576638..576776)
location: region:569495-576776:1
so has part: feature:569495-569740:1:exon
so has part: feature:569903-570030:1:exon
so has part: feature:571083-571138:1:exon
so has part: feature:571294-571385:1:exon
so has part: feature:571578-571624:1:exon
so has part: feature:572012-572110:1:exon
so has part: feature:572678-572821:1:exon
so has part: feature:573099-573219:1:exon
so has part: feature:573352-573476:1:exon
so has part: feature:573645-573705:1:exon
so has part: feature:574221-574311:1:exon
so has part: feature:574658-574751:1:exon
so has part: feature:574864-574931:1:exon
so has part: feature:575023-575104:1:exon
so has part: feature:576064-576148:1:exon
so has part: feature:576401-576565:1:exon
so has part: feature:576638-576776:1:exon

position:569495:1
position: 569495
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:569495-569740:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:569903-570030:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:571083-571138:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:571294-571385:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:571578-571624:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:572012-572110:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:572678-572821:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:573099-573219:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:573352-573476:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:573645-573705:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:574221-574311:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:574658-574751:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:574864-574931:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:575023-575104:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:576064-576148:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:576401-576565:1:exon

position:576565:1
position: 576565
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:576638-576776:1:exon

position:576638:1
position: 576638
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

AAAS
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: AAAS
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: aladin isoform X1
translation: MCSLGLFPPPPPPGDVTLYELNNALVCGRLSEQLPLPFQSQVPELPVLSLPKEPLKAHGRLEPSARPPFIHHRESLWKRCLSAWRDAGLCGLLRELAGAEEEGLRWLRTGSSHALAVCRWLSSLHGSLFPHLSLTSEDMITAFSQAVDWAGCTIRAFAWHPHTNKFAVALLDDSIRVYNSSRSPCSPRECQSLLRRRLSRLLLQPPQVSPGWDFWPARALSGPGTPRPSHTSATVPSLKHRLQRNVAAMAWKPLCASILAVACQSCVLVWHLDPTSLSTRPSSGCAQVLSYPGHGPVTSLAWAPSGERLLSASPVDTAMLVWDVSTETCVQLQWFGGGGVTYVAWSPDGSKVLAATPSAVFRVWEAQMWTCERWPTIRGRCQTGCWSPDGSRLLFTVLGESVIYSLSFSEYRGEMQGQVGGSKTASIVADLSETTFETLYGEERIGGEVHSMVWDPTGERLAVIIRGHPESVGSQPAVAVFRTRNSPVFELLPCGFVRGERGARPQLISFHPCFPQGALLTVCWSSGRISHIPFFFVSALEPRGSPRRSPAPVLGSVREQPLFSEL
SIO_010081: AAAS
subclass of: SO_0000673
so part of: AAAS
location: join(569618..569740,569903..570030,571083..571138,571294..571385,571578..571624,572012..572110,572370..572519,572678..572821,573099..573219,573352..573476,573645..573705,574221..574311,574658..574751,574864..574931,575023..575104,576064..576148,576401..576535)
location: region:569618-576535:1
so has part: feature:569618-569740:1:exon
so has part: feature:569903-570030:1:exon
so has part: feature:571083-571138:1:exon
so has part: feature:571294-571385:1:exon
so has part: feature:571578-571624:1:exon
so has part: feature:572012-572110:1:exon
so has part: feature:572370-572519:1:exon
so has part: feature:572678-572821:1:exon
so has part: feature:573099-573219:1:exon
so has part: feature:573352-573476:1:exon
so has part: feature:573645-573705:1:exon
so has part: feature:574221-574311:1:exon
so has part: feature:574658-574751:1:exon
so has part: feature:574864-574931:1:exon
so has part: feature:575023-575104:1:exon
so has part: feature:576064-576148:1:exon
so has part: feature:576401-576535:1:exon

XP_041567516.1
type: Protein
SIO_000068: ncbiprotein

position:569618:1
position: 569618
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:576535:1
position: 576535
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:569618-569740:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:569903-570030:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:571083-571138:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:571294-571385:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:571578-571624:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:572012-572110:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:572370-572519:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:572678-572821:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:573099-573219:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:573352-573476:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:573645-573705:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:574221-574311:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:574658-574751:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:574864-574931:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:575023-575104:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:576064-576148:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:576401-576535:1:exon

AAAS
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: AAAS
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: aladin isoform X1
translation: MCSLGLFPPPPPPGDVTLYELNNALVCGRLSEQLPLPFQSQVPELPVLSLPKEPLKAHGRLEPSARPPFIHHRESLWKRCLSAWRDAGLCGLLRELAGAEEEGLRWLRTGSSHALAVCRWLSSLHGSLFPHLSLTSEDMITAFSQAVDWAGCTIRAFAWHPHTNKFAVALLDDSIRVYNSSRSPCSPRECQSLLRRRLSRLLLQPPQVSPGWDFWPARALSGPGTPRPSHTSATVPSLKHRLQRNVAAMAWKPLCASILAVACQSCVLVWHLDPTSLSTRPSSGCAQVLSYPGHGPVTSLAWAPSGERLLSASPVDTAMLVWDVSTETCVQLQWFGGGGVTYVAWSPDGSKVLAATPSAVFRVWEAQMWTCERWPTIRGRCQTGCWSPDGSRLLFTVLGESVIYSLSFSEYRGEMQGQVGGSKTASIVADLSETTFETLYGEERIGGEVHSMVWDPTGERLAVIIRGHPESVGSQPAVAVFRTRNSPVFELLPCGFVRGERGARPQLISFHPCFPQGALLTVCWSSGRISHIPFFFVSALEPRGSPRRSPAPVLGSVREQPLFSEL
SIO_010081: AAAS
subclass of: SO_0000673
so part of: AAAS
location: join(569618..569740,569903..570030,571083..571138,571294..571385,571578..571624,572012..572110,572370..572519,572678..572821,573099..573219,573352..573476,573645..573705,574221..574311,574658..574751,574864..574931,575023..575104,576064..576148,576401..576535)
location: region:569618-576535:1
so has part: feature:569618-569740:1:exon
so has part: feature:569903-570030:1:exon
so has part: feature:571083-571138:1:exon
so has part: feature:571294-571385:1:exon
so has part: feature:571578-571624:1:exon
so has part: feature:572012-572110:1:exon
so has part: feature:572370-572519:1:exon
so has part: feature:572678-572821:1:exon
so has part: feature:573099-573219:1:exon
so has part: feature:573352-573476:1:exon
so has part: feature:573645-573705:1:exon
so has part: feature:574221-574311:1:exon
so has part: feature:574658-574751:1:exon
so has part: feature:574864-574931:1:exon
so has part: feature:575023-575104:1:exon
so has part: feature:576064-576148:1:exon
so has part: feature:576401-576535:1:exon

XP_041567517.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:569618-569740:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:569903-570030:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:571083-571138:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:571294-571385:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:571578-571624:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:572012-572110:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:572370-572519:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:572678-572821:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:573099-573219:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:573352-573476:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:573645-573705:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:574221-574311:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:574658-574751:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:574864-574931:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:575023-575104:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:576064-576148:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:576401-576535:1:exon

AAAS
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: AAAS
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: aladin isoform X2
translation: MCSLGLFPPPPPPGDVTLYELNNALVCGRLSEQLPLPFQSQVPELPVLSLPKEPLKAHGRLEPSARPPFIHHRESLWKRCLSAWRDAGLCGLLRELAGAEEEGLRWLRTGSSHALAVCRWLSSLHGSLFPHLSLTSEDMITAFSQAVDWAGCTIRAFAWHPHTNKFAVALLDDSIRVYNSSSATVPSLKHRLQRNVAAMAWKPLCASILAVACQSCVLVWHLDPTSLSTRPSSGCAQVLSYPGHGPVTSLAWAPSGERLLSASPVDTAMLVWDVSTETCVQLQWFGGGGVTYVAWSPDGSKVLAATPSAVFRVWEAQMWTCERWPTIRGRCQTGCWSPDGSRLLFTVLGESVIYSLSFSEYRGEMQGQVGGSKTASIVADLSETTFETLYGEERIGGEVHSMVWDPTGERLAVIIRGHPESVGSQPAVAVFRTRNSPVFELLPCGFVRGERGARPQLISFHPCFPQGALLTVCWSSGRISHIPFFFVSALEPRGSPRRSPAPVLGSVREQPLFSEL
SIO_010081: AAAS
subclass of: SO_0000673
so part of: AAAS
location: join(569618..569740,569903..570030,571083..571138,571294..571385,571578..571624,572012..572110,572678..572821,573099..573219,573352..573476,573645..573705,574221..574311,574658..574751,574864..574931,575023..575104,576064..576148,576401..576535)
location: region:569618-576535:1
so has part: feature:569618-569740:1:exon
so has part: feature:569903-570030:1:exon
so has part: feature:571083-571138:1:exon
so has part: feature:571294-571385:1:exon
so has part: feature:571578-571624:1:exon
so has part: feature:572012-572110:1:exon
so has part: feature:572678-572821:1:exon
so has part: feature:573099-573219:1:exon
so has part: feature:573352-573476:1:exon
so has part: feature:573645-573705:1:exon
so has part: feature:574221-574311:1:exon
so has part: feature:574658-574751:1:exon
so has part: feature:574864-574931:1:exon
so has part: feature:575023-575104:1:exon
so has part: feature:576064-576148:1:exon
so has part: feature:576401-576535:1:exon

XP_041567518.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:569618-569740:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:569903-570030:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:571083-571138:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:571294-571385:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:571578-571624:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:572012-572110:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:572678-572821:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:573099-573219:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:573352-573476:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:573645-573705:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:574221-574311:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:574658-574751:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:574864-574931:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:575023-575104:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:576064-576148:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:576401-576535:1:exon

MYG1
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: MYG1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(578279..582065)
location: region:578279-582065:-1
so has part: feature:578279-582065:-1:exon
subclass of: SO_0000010

100230912
type: Gene
SIO_000068: ncbigene

position:578279:-1
position: 578279
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:582065:-1
position: 582065
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:578279-582065:-1:exon

MYG1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: MYG1
product: MYG1 exonuclease
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 120 samples with support for all annotated introns
transcript id: XM_032744899.2
SIO_010081: MYG1
subclass of: SO_0000673
so part of: MYG1
location: complement(join(578279..578711,579120..579301,579520..579642,580026..580175,580997..581156,581238..581350,581863..582065))
location: region:578279-582065:-1
so has part: feature:581863-582065:-1:exon
so has part: feature:581238-581350:-1:exon
so has part: feature:580997-581156:-1:exon
so has part: feature:580026-580175:-1:exon
so has part: feature:579520-579642:-1:exon
so has part: feature:579120-579301:-1:exon
so has part: feature:578279-578711:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:581863-582065:-1:exon

position:581863:-1
position: 581863
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:581238-581350:-1:exon

position:581238:-1
position: 581238
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:581350:-1
position: 581350
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:580997-581156:-1:exon

position:580997:-1
position: 580997
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:581156:-1
position: 581156
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:580026-580175:-1:exon

position:580026:-1
position: 580026
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:580175:-1
position: 580175
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:579520-579642:-1:exon

position:579520:-1
position: 579520
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:579642:-1
position: 579642
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:579120-579301:-1:exon

position:579120:-1
position: 579120
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:579301:-1
position: 579301
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:578279-578711:-1:exon

position:578711:-1
position: 578711
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

MYG1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: MYG1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: MYG1 exonuclease
translation: MRGAARAARLGAMAATGTATGTGPAHKRPHPEPAARIGTHDGTFHCDEALACFLLRLLPRYRDAEIVRTRDPQLLAACDVLVDVGGEYDPGRHRYDHHQRSFAESMRSLRPDKPWSTKLSSAGLVYGHFGPQILAALLGQPEHGPVVTALFDKLYENFVEEIDAMDNGIAPAAGEPRYALSTTLSARVGHLNPRWNDPDQDTEAGFRRAMELVGSEFLERLDFYHRAWLPARALVEEAVRHRLEVDASGQVLELPQGGCPWQEHVFQLERELALPRPLQLVLFPDRGGQWRVQSVPTAPHSFQSRLPLPEAWRGLRDEALSELAGIPGCVFVHASGFIGGHRTREGALQMARRALELGGGTGST
SIO_010081: MYG1
subclass of: SO_0000673
so part of: MYG1
location: complement(join(578531..578711,579120..579301,579520..579642,580026..580175,580997..581156,581238..581350,581863..582048))
location: region:578531-582048:-1
so has part: feature:581863-582048:-1:exon
so has part: feature:581238-581350:-1:exon
so has part: feature:580997-581156:-1:exon
so has part: feature:580026-580175:-1:exon
so has part: feature:579520-579642:-1:exon
so has part: feature:579120-579301:-1:exon
so has part: feature:578531-578711:-1:exon

XP_032600790.2
type: Protein
SIO_000068: ncbiprotein

position:578531:-1
position: 578531
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:582048:-1
position: 582048
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:581863-582048:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:581238-581350:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:580997-581156:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:580026-580175:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:579520-579642:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:579120-579301:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:578531-578711:-1:exon

VDR
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: VDR
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(582576..597632)
location: region:582576-597632:-1
so has part: feature:582576-597632:-1:exon
subclass of: SO_0000010

100221284
type: Gene
SIO_000068: ncbigene

position:582576:-1
position: 582576
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:597632:-1
position: 597632
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:582576-597632:-1:exon

VDR
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: VDR
product: vitamin D receptor
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 27 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 13 samples with support for all annotated introns
transcript id: XM_030259459.3
SIO_010081: VDR
subclass of: SO_0000673
so part of: VDR
location: complement(join(582576..583549,584152..584268,584626..584777,585200..585371,586297..586420,586526..586710,589805..589935,592627..592777,597582..597632))
location: region:582576-597632:-1
so has part: feature:597582-597632:-1:exon
so has part: feature:592627-592777:-1:exon
so has part: feature:589805-589935:-1:exon
so has part: feature:586526-586710:-1:exon
so has part: feature:586297-586420:-1:exon
so has part: feature:585200-585371:-1:exon
so has part: feature:584626-584777:-1:exon
so has part: feature:584152-584268:-1:exon
so has part: feature:582576-583549:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:597582-597632:-1:exon

position:597582:-1
position: 597582
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:592627-592777:-1:exon

position:592627:-1
position: 592627
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:592777:-1
position: 592777
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:589805-589935:-1:exon

position:589805:-1
position: 589805
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:589935:-1
position: 589935
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:586526-586710:-1:exon

position:586526:-1
position: 586526
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:586710:-1
position: 586710
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:586297-586420:-1:exon

position:586297:-1
position: 586297
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:586420:-1
position: 586420
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:585200-585371:-1:exon

position:585200:-1
position: 585200
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:585371:-1
position: 585371
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:584626-584777:-1:exon

position:584626:-1
position: 584626
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:584777:-1
position: 584777
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:584152-584268:-1:exon

position:584152:-1
position: 584152
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:584268:-1
position: 584268
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:582576-583549:-1:exon

position:583549:-1
position: 583549
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

VDR
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: VDR
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: vitamin D3 receptor
translation: MDPGASSTSVADPAGDPERNVPRICGVCGDRATGFHFNAMTCEGCKGFFRRSMKRKAMFTCPFSGDCHITKDNRRHCQACRLKRCLDIGMMKEFILTDEEVQRKREMILKRKEEEALRESLKPKLSEEQQKVIDILLEAHRKTYDPTYADFTKFRPPVRSHPSSRGATKSSSLLTQDLSSEDSSDLFSSEAFSTFPEPAEPPPFPGLALPEERDESSSVNAEFSQLSMLPHLADLVSYSIQKVIGFAKMIPGFRDLSVEDQIVLLKCSAMEVIMLRSNESFTLEDMSWTCGSSDFKYRVSDVTQAGHSMDLLEPLVKFQVGLKKLNLHEEEHVLLMAICILSPDRPGVREPLRVEALQERLSEVLQSYIRARHAAPGGRLLYAKMIQKLADLRSLNEEHSRQYRCLSFQPEHSMQLTPLLLEVFGNDIA
SIO_010081: VDR
subclass of: SO_0000673
so part of: VDR
location: complement(join(583290..583549,584152..584268,584626..584777,585200..585371,586297..586420,586526..586710,589805..589935,592627..592775))
location: region:583290-592775:-1
so has part: feature:592627-592775:-1:exon
so has part: feature:589805-589935:-1:exon
so has part: feature:586526-586710:-1:exon
so has part: feature:586297-586420:-1:exon
so has part: feature:585200-585371:-1:exon
so has part: feature:584626-584777:-1:exon
so has part: feature:584152-584268:-1:exon
so has part: feature:583290-583549:-1:exon

XP_030115319.2
type: Protein
SIO_000068: ncbiprotein

position:583290:-1
position: 583290
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:592775:-1
position: 592775
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:592627-592775:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:589805-589935:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:586526-586710:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:586297-586420:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:585200-585371:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:584626-584777:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:584152-584268:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:583290-583549:-1:exon

TMEM106C
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: TMEM106C
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 603225..607128
location: region:603225-607128:1
so has part: feature:603225-607128:1:exon
subclass of: SO_0000010

115491448
type: Gene
SIO_000068: ncbigene

position:603225:1
position: 603225
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:607128:1
position: 607128
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:603225-607128:1:exon

TMEM106C
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: TMEM106C
product: transmembrane protein 106C, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XM_032744906.2
SIO_010081: TMEM106C
subclass of: SO_0000673
so part of: TMEM106C
location: join(603225..603301,604228..604439,604536..604599,604942..605101,605183..605323,605437..605486,605733..605786,606106..606282,606527..607128)
location: region:603225-607128:1
so has part: feature:603225-603301:1:exon
so has part: feature:604228-604439:1:exon
so has part: feature:604536-604599:1:exon
so has part: feature:604942-605101:1:exon
so has part: feature:605183-605323:1:exon
so has part: feature:605437-605486:1:exon
so has part: feature:605733-605786:1:exon
so has part: feature:606106-606282:1:exon
so has part: feature:606527-607128:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:603225-603301:1:exon

position:603301:1
position: 603301
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:604228-604439:1:exon

position:604228:1
position: 604228
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:604439:1
position: 604439
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:604536-604599:1:exon

position:604536:1
position: 604536
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:604599:1
position: 604599
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:604942-605101:1:exon

position:604942:1
position: 604942
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:605101:1
position: 605101
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:605183-605323:1:exon

position:605183:1
position: 605183
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:605323:1
position: 605323
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:605437-605486:1:exon

position:605437:1
position: 605437
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:605486:1
position: 605486
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:605733-605786:1:exon

position:605733:1
position: 605733
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:605786:1
position: 605786
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:606106-606282:1:exon

position:606106:1
position: 606106
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:606282:1
position: 606282
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:606527-607128:1:exon

position:606527:1
position: 606527
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

TMEM106C
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: TMEM106C
product: transmembrane protein 106C, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 15 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 18 samples with support for all annotated introns
transcript id: XM_032744907.2
SIO_010081: TMEM106C
subclass of: SO_0000673
so part of: TMEM106C
location: join(603225..603301,604228..604439,604536..604599,604942..605101,605183..605323,605437..605486,605733..605786,606125..607128)
location: region:603225-607128:1
so has part: feature:603225-603301:1:exon
so has part: feature:604228-604439:1:exon
so has part: feature:604536-604599:1:exon
so has part: feature:604942-605101:1:exon
so has part: feature:605183-605323:1:exon
so has part: feature:605437-605486:1:exon
so has part: feature:605733-605786:1:exon
so has part: feature:606125-607128:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:603225-603301:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:604228-604439:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:604536-604599:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:604942-605101:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:605183-605323:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:605437-605486:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:605733-605786:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:606125-607128:1:exon

position:606125:1
position: 606125
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

TMEM106C
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: TMEM106C
product: transmembrane protein 106C, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 15 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
transcript id: XM_032744908.2
SIO_010081: TMEM106C
subclass of: SO_0000673
so part of: TMEM106C
location: join(603225..603301,604228..604439,604536..604599,604942..605101,605183..605323,605437..605486,605733..605786,606125..606282,606527..607128)
location: region:603225-607128:1
so has part: feature:603225-603301:1:exon
so has part: feature:604228-604439:1:exon
so has part: feature:604536-604599:1:exon
so has part: feature:604942-605101:1:exon
so has part: feature:605183-605323:1:exon
so has part: feature:605437-605486:1:exon
so has part: feature:605733-605786:1:exon
so has part: feature:606125-606282:1:exon
so has part: feature:606527-607128:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:603225-603301:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:604228-604439:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:604536-604599:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:604942-605101:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:605183-605323:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:605437-605486:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:605733-605786:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:606125-606282:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:606527-607128:1:exon

TMEM106C
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: TMEM106C
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: transmembrane protein 106C isoform X1
translation: MGSVRSLPAASAAPSRRKAEHEEDEDVLVAQEPVEDVAKIPYMEFTGRDSVTCPTCQGTGCIPTEQVNELVALIPYSDQRLRPQRTKLYVLLSVLLCLLLSGLGVFFLFPHSVLVDDGGIKVVQVWFDRKNSAVLLAITATLRIRNSNFYSVSVSSLSSQVQYMNTVVGSQQLTNVSSIQPLRDKLVNFTVKAELGGSLSYVYFFCTLPKVKVHNIVILMSVPLPCQDLGEAVLHRPQRPERPGDLPLPGLQLQLHGPAARRGPGGALRAPGQHRGSTGTGNEVIFLLSGGSTSGPQKRDSSHLQ
SIO_010081: TMEM106C
subclass of: SO_0000673
so part of: TMEM106C
location: join(604247..604439,604536..604599,604942..605101,605183..605323,605437..605486,605733..605786,606106..606282,606527..606605)
location: region:604247-606605:1
so has part: feature:604247-604439:1:exon
so has part: feature:604536-604599:1:exon
so has part: feature:604942-605101:1:exon
so has part: feature:605183-605323:1:exon
so has part: feature:605437-605486:1:exon
so has part: feature:605733-605786:1:exon
so has part: feature:606106-606282:1:exon
so has part: feature:606527-606605:1:exon

XP_032600797.2
type: Protein
SIO_000068: ncbiprotein

position:604247:1
position: 604247
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:606605:1
position: 606605
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:604247-604439:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:604536-604599:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:604942-605101:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:605183-605323:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:605437-605486:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:605733-605786:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:606106-606282:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:606527-606605:1:exon

TMEM106C
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: TMEM106C
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: transmembrane protein 106C isoform X2
translation: MGSVRSLPAASAAPSRRKAEHEEDEDVLVAQEPVEDVAKIPYMEFTGRDSVTCPTCQGTGCIPTEQVNELVALIPYSDQRLRPQRTKLYVLLSVLLCLLLSGLGVFFLFPHSVLVDDGGIKVVQVWFDRKNSAVLLAITATLRIRNSNFYSVSVSSLSSQVQYMNTVVGSQQLTNVSSIQPLRDKLVNFTVKAELGGSLSYVYFFCTLPKVKVHNIVILMRTSVKLSYIGRSAQSALETFHYLDCSSNSTAPLPAAARAAP
SIO_010081: TMEM106C
subclass of: SO_0000673
so part of: TMEM106C
location: join(604247..604439,604536..604599,604942..605101,605183..605323,605437..605486,605733..605786,606125..606248)
location: region:604247-606248:1
so has part: feature:604247-604439:1:exon
so has part: feature:604536-604599:1:exon
so has part: feature:604942-605101:1:exon
so has part: feature:605183-605323:1:exon
so has part: feature:605437-605486:1:exon
so has part: feature:605733-605786:1:exon
so has part: feature:606125-606248:1:exon

XP_032600798.1
type: Protein
SIO_000068: ncbiprotein

position:606248:1
position: 606248
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:604247-604439:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:604536-604599:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:604942-605101:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:605183-605323:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:605437-605486:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:605733-605786:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:606125-606248:1:exon

TMEM106C
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: TMEM106C
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: transmembrane protein 106C isoform X2
translation: MGSVRSLPAASAAPSRRKAEHEEDEDVLVAQEPVEDVAKIPYMEFTGRDSVTCPTCQGTGCIPTEQVNELVALIPYSDQRLRPQRTKLYVLLSVLLCLLLSGLGVFFLFPHSVLVDDGGIKVVQVWFDRKNSAVLLAITATLRIRNSNFYSVSVSSLSSQVQYMNTVVGSQQLTNVSSIQPLRDKLVNFTVKAELGGSLSYVYFFCTLPKVKVHNIVILMRTSVKLSYIGRSAQSALETFHYLDCSSNSTAPLPAAARAAP
SIO_010081: TMEM106C
subclass of: SO_0000673
so part of: TMEM106C
location: join(604247..604439,604536..604599,604942..605101,605183..605323,605437..605486,605733..605786,606125..606248)
location: region:604247-606248:1
so has part: feature:604247-604439:1:exon
so has part: feature:604536-604599:1:exon
so has part: feature:604942-605101:1:exon
so has part: feature:605183-605323:1:exon
so has part: feature:605437-605486:1:exon
so has part: feature:605733-605786:1:exon
so has part: feature:606125-606248:1:exon

XP_032600799.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:604247-604439:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:604536-604599:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:604942-605101:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:605183-605323:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:605437-605486:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:605733-605786:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:606125-606248:1:exon

COL2A1
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: COL2A1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(608779..>621927)
location: region:608779-621927:-1
so has part: feature:608779-621927:-1:exon
subclass of: SO_0000010

100219722
type: Gene
SIO_000068: ncbigene

position:608779:-1
position: 608779
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:621927:-1
position: 621927
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:608779-621927:-1:exon

COL2A1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: COL2A1
product: collagen type II alpha 1 chain
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 15 ESTs, 45 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_032744889.2
SIO_010081: COL2A1
subclass of: SO_0000673
so part of: COL2A1
location: complement(join(608779..609481,610333..610575,611057..611244,611818..612106,612777..612884,612982..613035,613438..613545,613665..613718,613987..614094,614204..614257,614433..614540,615439..615546,615626..615787,616252..616305,616394..616447,616564..616671,616742..616795,616878..616931,617596..617649,618014..618067,618156..618263,618339..618437,618902..618946,619035..619088,619331..619384,619573..619626,619767..619820,619901..619999,620598..620651,621787..>621927))
location: region:608779-621927:-1
so has part: feature:621787-621927:-1:exon
so has part: feature:620598-620651:-1:exon
so has part: feature:619901-619999:-1:exon
so has part: feature:619767-619820:-1:exon
so has part: feature:619573-619626:-1:exon
so has part: feature:619331-619384:-1:exon
so has part: feature:619035-619088:-1:exon
so has part: feature:618902-618946:-1:exon
so has part: feature:618339-618437:-1:exon
so has part: feature:618156-618263:-1:exon
so has part: feature:618014-618067:-1:exon
so has part: feature:617596-617649:-1:exon
so has part: feature:616878-616931:-1:exon
so has part: feature:616742-616795:-1:exon
so has part: feature:616564-616671:-1:exon
so has part: feature:616394-616447:-1:exon
so has part: feature:616252-616305:-1:exon
so has part: feature:615626-615787:-1:exon
so has part: feature:615439-615546:-1:exon
so has part: feature:614433-614540:-1:exon
so has part: feature:614204-614257:-1:exon
so has part: feature:613987-614094:-1:exon
so has part: feature:613665-613718:-1:exon
so has part: feature:613438-613545:-1:exon
so has part: feature:612982-613035:-1:exon
so has part: feature:612777-612884:-1:exon
so has part: feature:611818-612106:-1:exon
so has part: feature:611057-611244:-1:exon
so has part: feature:610333-610575:-1:exon
so has part: feature:608779-609481:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:621787-621927:-1:exon

position:621787:-1
position: 621787
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:620598-620651:-1:exon

position:620598:-1
position: 620598
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:620651:-1
position: 620651
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:619901-619999:-1:exon

position:619901:-1
position: 619901
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:619999:-1
position: 619999
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:619767-619820:-1:exon

position:619767:-1
position: 619767
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:619820:-1
position: 619820
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:619573-619626:-1:exon

position:619573:-1
position: 619573
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:619626:-1
position: 619626
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:619331-619384:-1:exon

position:619331:-1
position: 619331
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:619384:-1
position: 619384
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:619035-619088:-1:exon

position:619035:-1
position: 619035
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:619088:-1
position: 619088
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:618902-618946:-1:exon

position:618902:-1
position: 618902
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:618946:-1
position: 618946
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:618339-618437:-1:exon

position:618339:-1
position: 618339
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:618437:-1
position: 618437
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:618156-618263:-1:exon

position:618156:-1
position: 618156
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:618263:-1
position: 618263
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:618014-618067:-1:exon

position:618014:-1
position: 618014
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:618067:-1
position: 618067
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:617596-617649:-1:exon

position:617596:-1
position: 617596
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:617649:-1
position: 617649
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:616878-616931:-1:exon

position:616878:-1
position: 616878
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:616931:-1
position: 616931
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:616742-616795:-1:exon

position:616742:-1
position: 616742
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:616795:-1
position: 616795
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:616564-616671:-1:exon

position:616564:-1
position: 616564
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:616671:-1
position: 616671
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:616394-616447:-1:exon

position:616394:-1
position: 616394
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:616447:-1
position: 616447
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:616252-616305:-1:exon

position:616252:-1
position: 616252
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:616305:-1
position: 616305
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:615626-615787:-1:exon

position:615626:-1
position: 615626
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:615787:-1
position: 615787
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:615439-615546:-1:exon

position:615439:-1
position: 615439
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:615546:-1
position: 615546
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:614433-614540:-1:exon

position:614433:-1
position: 614433
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:614540:-1
position: 614540
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:614204-614257:-1:exon

position:614204:-1
position: 614204
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:614257:-1
position: 614257
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 22
SIO_000628: feature:613987-614094:-1:exon

position:613987:-1
position: 613987
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:614094:-1
position: 614094
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 23
SIO_000628: feature:613665-613718:-1:exon

position:613665:-1
position: 613665
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:613718:-1
position: 613718
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 24
SIO_000628: feature:613438-613545:-1:exon

position:613438:-1
position: 613438
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:613545:-1
position: 613545
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 25
SIO_000628: feature:612982-613035:-1:exon

position:612982:-1
position: 612982
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:613035:-1
position: 613035
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 26
SIO_000628: feature:612777-612884:-1:exon

position:612777:-1
position: 612777
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:612884:-1
position: 612884
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 27
SIO_000628: feature:611818-612106:-1:exon

position:611818:-1
position: 611818
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:612106:-1
position: 612106
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 28
SIO_000628: feature:611057-611244:-1:exon

position:611057:-1
position: 611057
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:611244:-1
position: 611244
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 29
SIO_000628: feature:610333-610575:-1:exon

position:610333:-1
position: 610333
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:610575:-1
position: 610575
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 30
SIO_000628: feature:608779-609481:-1:exon

position:609481:-1
position: 609481
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

COL2A1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: COL2A1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: collagen alpha-1(II) chain
translation: KLTPNPKLTPNPPQGAPGERGPAGLAGPKGATGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPTGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGGNGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGESGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGATGPAGPTGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGARGLTGPIGPPGPAGPNGEKGESGPPGPSGAAGARGAPGERGEPGAPGPAGFAGPPGADGQPGAKGEQGEPGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGPNGNPGPPGPPGSAGKDGPKGARGDAGPPGRAGDPGLQGPAGPPGEKGEPGEDGPAGPDGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGSTGDRGPPGPVGPPGLTGPAGEPGREGNPGSDGPPGRDGAAGVKGDRGETGPVGAPGAPGAPGAPGPVGPTGKQGDRGETGAQGPMGPSGPAGARGMPGPQGPRGDKGEAGEAGERGLKGHRGFTGLQGLPGPPGPSGDQGAAGPAGPSGPRGPPGPVGPSGKDGSNGMPGPIGPPGPRGRSGEPGPAGPPGNPGPPGPPGPPGTGIDMSAFAGLGQPEKGPDPGRYMRADEAAPGLRPHDAEVDATLKALNNQIENIRSPEGSRKNPARTCRDIKLCHPDWKSGDYWIDPNQGCTLDAIKVFCNMATGETCVYPSPGSIPRKNWWSSKAKEKKHVWFAETINGGFHFSYGAEELAPNTANIQMTFLRLLSTEGSQNVTYHCRNSVAYLDEESGSLRKALLIQGSNDVEIRAEGNSRFTYSVLEDGCTKHTGKWGRTVIEYRSQKTSRLPIVDIAPMDIGGPEQEFGVDLGPVCFL
SIO_010081: COL2A1
subclass of: SO_0000673
so part of: COL2A1
location: complement(join(609335..609481,610333..610575,611057..611244,611818..612106,612777..612884,612982..613035,613438..613545,613665..613718,613987..614094,614204..614257,614433..614540,615439..615546,615626..615787,616252..616305,616394..616447,616564..616671,616742..616795,616878..616931,617596..617649,618014..618067,618156..618263,618339..618437,618902..618946,619035..619088,619331..619384,619573..619626,619767..619820,619901..619999,620598..620651,621787..>621927))
location: region:609335-621927:-1
so has part: feature:621787-621927:-1:exon
so has part: feature:620598-620651:-1:exon
so has part: feature:619901-619999:-1:exon
so has part: feature:619767-619820:-1:exon
so has part: feature:619573-619626:-1:exon
so has part: feature:619331-619384:-1:exon
so has part: feature:619035-619088:-1:exon
so has part: feature:618902-618946:-1:exon
so has part: feature:618339-618437:-1:exon
so has part: feature:618156-618263:-1:exon
so has part: feature:618014-618067:-1:exon
so has part: feature:617596-617649:-1:exon
so has part: feature:616878-616931:-1:exon
so has part: feature:616742-616795:-1:exon
so has part: feature:616564-616671:-1:exon
so has part: feature:616394-616447:-1:exon
so has part: feature:616252-616305:-1:exon
so has part: feature:615626-615787:-1:exon
so has part: feature:615439-615546:-1:exon
so has part: feature:614433-614540:-1:exon
so has part: feature:614204-614257:-1:exon
so has part: feature:613987-614094:-1:exon
so has part: feature:613665-613718:-1:exon
so has part: feature:613438-613545:-1:exon
so has part: feature:612982-613035:-1:exon
so has part: feature:612777-612884:-1:exon
so has part: feature:611818-612106:-1:exon
so has part: feature:611057-611244:-1:exon
so has part: feature:610333-610575:-1:exon
so has part: feature:609335-609481:-1:exon

XP_032600780.2
type: Protein
SIO_000068: ncbiprotein

position:609335:-1
position: 609335
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:621787-621927:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:620598-620651:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:619901-619999:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:619767-619820:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:619573-619626:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:619331-619384:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:619035-619088:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:618902-618946:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:618339-618437:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:618156-618263:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:618014-618067:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:617596-617649:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:616878-616931:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:616742-616795:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:616564-616671:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:616394-616447:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:616252-616305:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:615626-615787:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:615439-615546:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:614433-614540:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:614204-614257:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:613987-614094:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:613665-613718:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:613438-613545:-1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:612982-613035:-1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:612777-612884:-1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:611818-612106:-1:exon

urn:…
SIO_000300: 28
SIO_000628: feature:611057-611244:-1:exon

urn:…
SIO_000300: 29
SIO_000628: feature:610333-610575:-1:exon

urn:…
SIO_000300: 30
SIO_000628: feature:609335-609481:-1:exon

LOC115491327
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: LOC115491327
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(621953..629939)
location: region:621953-629939:-1
so has part: feature:621953-629939:-1:exon
subclass of: SO_0000010

115491327
type: Gene
SIO_000068: ncbigene

position:621953:-1
position: 621953
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:629939:-1
position: 629939
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:621953-629939:-1:exon

LOC115491327
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: LOC115491327
product: collagen alpha-1(II) chain-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 14 Proteins, and 80% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_041711489.1
SIO_010081: LOC115491327
subclass of: SO_0000673
so part of: LOC115491327
location: complement(join(621953..622021,622185..622292,623590..623643,624264..624362,624861..624905,625077..625175,625255..625308,625427..625471,625562..625615,625785..625829,626097..626150,626245..626298,626381..626434,626552..626605,626696..626749,626832..626876,627126..627203,627679..627780,627869..627922,628048..628080,628198..628230,628531..628547,629211..629444,629795..629939))
location: region:621953-629939:-1
so has part: feature:629795-629939:-1:exon
so has part: feature:629211-629444:-1:exon
so has part: feature:628531-628547:-1:exon
so has part: feature:628198-628230:-1:exon
so has part: feature:628048-628080:-1:exon
so has part: feature:627869-627922:-1:exon
so has part: feature:627679-627780:-1:exon
so has part: feature:627126-627203:-1:exon
so has part: feature:626832-626876:-1:exon
so has part: feature:626696-626749:-1:exon
so has part: feature:626552-626605:-1:exon
so has part: feature:626381-626434:-1:exon
so has part: feature:626245-626298:-1:exon
so has part: feature:626097-626150:-1:exon
so has part: feature:625785-625829:-1:exon
so has part: feature:625562-625615:-1:exon
so has part: feature:625427-625471:-1:exon
so has part: feature:625255-625308:-1:exon
so has part: feature:625077-625175:-1:exon
so has part: feature:624861-624905:-1:exon
so has part: feature:624264-624362:-1:exon
so has part: feature:623590-623643:-1:exon
so has part: feature:622185-622292:-1:exon
so has part: feature:621953-622021:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:629795-629939:-1:exon

position:629795:-1
position: 629795
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:629211-629444:-1:exon

position:629211:-1
position: 629211
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:629444:-1
position: 629444
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:628531-628547:-1:exon

position:628531:-1
position: 628531
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:628547:-1
position: 628547
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:628198-628230:-1:exon

position:628198:-1
position: 628198
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:628230:-1
position: 628230
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:628048-628080:-1:exon

position:628048:-1
position: 628048
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:628080:-1
position: 628080
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:627869-627922:-1:exon

position:627869:-1
position: 627869
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:627922:-1
position: 627922
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:627679-627780:-1:exon

position:627679:-1
position: 627679
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:627780:-1
position: 627780
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:627126-627203:-1:exon

position:627126:-1
position: 627126
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:627203:-1
position: 627203
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:626832-626876:-1:exon

position:626832:-1
position: 626832
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:626876:-1
position: 626876
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:626696-626749:-1:exon

position:626696:-1
position: 626696
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:626749:-1
position: 626749
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:626552-626605:-1:exon

position:626552:-1
position: 626552
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:626605:-1
position: 626605
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:626381-626434:-1:exon

position:626381:-1
position: 626381
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:626434:-1
position: 626434
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:626245-626298:-1:exon

position:626245:-1
position: 626245
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:626298:-1
position: 626298
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:626097-626150:-1:exon

position:626097:-1
position: 626097
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:626150:-1
position: 626150
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:625785-625829:-1:exon

position:625785:-1
position: 625785
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:625829:-1
position: 625829
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:625562-625615:-1:exon

position:625562:-1
position: 625562
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:625615:-1
position: 625615
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:625427-625471:-1:exon

position:625427:-1
position: 625427
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:625471:-1
position: 625471
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:625255-625308:-1:exon

position:625255:-1
position: 625255
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:625308:-1
position: 625308
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:625077-625175:-1:exon

position:625077:-1
position: 625077
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:625175:-1
position: 625175
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:624861-624905:-1:exon

position:624861:-1
position: 624861
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:624905:-1
position: 624905
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:624264-624362:-1:exon

position:624264:-1
position: 624264
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:624362:-1
position: 624362
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 22
SIO_000628: feature:623590-623643:-1:exon

position:623590:-1
position: 623590
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:623643:-1
position: 623643
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 23
SIO_000628: feature:622185-622292:-1:exon

position:622185:-1
position: 622185
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:622292:-1
position: 622292
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 24
SIO_000628: feature:621953-622021:-1:exon

position:622021:-1
position: 622021
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC115491327
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: LOC115491327
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: collagen alpha-1(II) chain-like
translation: MSLLGAGSATTPLLAVPALCHRCPLTAGRRVPSAPPPPPPPPPPPPPPVSPRCPRAVPAAEAGSCLQDGHRYSDKDVWKPEPCRICVCDTGTVLCDEILCEELRDCPSPEIPFGECCPICPTEQPSGQPGPKGQKGEPGDIKDVVGPRGPPGPQGPAGEQGQRGDRGEKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPSGSPGPQGFQGNPGEPGEPGAAGPMGPRGPPGPPGKPGDDGESGKPGKSGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGAKGESGSPGENGSPGPMGPRGLPGERGRPGPSGAAGARGNDGLPGPAGPPGPVGPAGAPGFPGAPGSKGEAGPTGARGPEGAQGPRGESGTPGSPGPAGAPGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGETGPAGPQGAPGPAGEEGKRGARGEPGAAGPLGPPGERGAPGNRGFPGQDGLAGPKVGSW
SIO_010081: LOC115491327
subclass of: SO_0000673
so part of: LOC115491327
location: complement(join(621953..622021,622185..622292,623590..623643,624264..624362,624861..624905,625077..625175,625255..625308,625427..625471,625562..625615,625785..625829,626097..626150,626245..626298,626381..626434,626552..626605,626696..626749,626832..626876,627126..627203,627679..627780,627869..627922,628048..628080,628198..628230,628531..628547,629211..629444,629795..629939))
location: region:621953-629939:-1
so has part: feature:629795-629939:-1:exon
so has part: feature:629211-629444:-1:exon
so has part: feature:628531-628547:-1:exon
so has part: feature:628198-628230:-1:exon
so has part: feature:628048-628080:-1:exon
so has part: feature:627869-627922:-1:exon
so has part: feature:627679-627780:-1:exon
so has part: feature:627126-627203:-1:exon
so has part: feature:626832-626876:-1:exon
so has part: feature:626696-626749:-1:exon
so has part: feature:626552-626605:-1:exon
so has part: feature:626381-626434:-1:exon
so has part: feature:626245-626298:-1:exon
so has part: feature:626097-626150:-1:exon
so has part: feature:625785-625829:-1:exon
so has part: feature:625562-625615:-1:exon
so has part: feature:625427-625471:-1:exon
so has part: feature:625255-625308:-1:exon
so has part: feature:625077-625175:-1:exon
so has part: feature:624861-624905:-1:exon
so has part: feature:624264-624362:-1:exon
so has part: feature:623590-623643:-1:exon
so has part: feature:622185-622292:-1:exon
so has part: feature:621953-622021:-1:exon

XP_041567423.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:629795-629939:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:629211-629444:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:628531-628547:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:628198-628230:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:628048-628080:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:627869-627922:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:627679-627780:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:627126-627203:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:626832-626876:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:626696-626749:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:626552-626605:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:626381-626434:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:626245-626298:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:626097-626150:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:625785-625829:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:625562-625615:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:625427-625471:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:625255-625308:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:625077-625175:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:624861-624905:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:624264-624362:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:623590-623643:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:622185-622292:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:621953-622021:-1:exon

SENP1
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: SENP1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(638293..647592)
location: region:638293-647592:-1
so has part: feature:638293-647592:-1:exon
subclass of: SO_0000010

105758776
type: Gene
SIO_000068: ncbigene

position:638293:-1
position: 638293
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:647592:-1
position: 647592
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:638293-647592:-1:exon

SENP1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: SENP1
product: SUMO specific peptidase 1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 ESTs, 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 69 samples with support for all annotated introns
transcript id: XM_030259362.3
SIO_010081: SENP1
subclass of: SO_0000673
so part of: SENP1
location: complement(join(638293..638931,639515..639610,639917..640001,640379..640458,641203..641406,641850..641981,642394..642543,643340..643424,643540..643578,643733..643787,644105..644340,645073..645176,645484..645619,646033..646129,646240..646312,647002..647592))
location: region:638293-647592:-1
so has part: feature:647002-647592:-1:exon
so has part: feature:646240-646312:-1:exon
so has part: feature:646033-646129:-1:exon
so has part: feature:645484-645619:-1:exon
so has part: feature:645073-645176:-1:exon
so has part: feature:644105-644340:-1:exon
so has part: feature:643733-643787:-1:exon
so has part: feature:643540-643578:-1:exon
so has part: feature:643340-643424:-1:exon
so has part: feature:642394-642543:-1:exon
so has part: feature:641850-641981:-1:exon
so has part: feature:641203-641406:-1:exon
so has part: feature:640379-640458:-1:exon
so has part: feature:639917-640001:-1:exon
so has part: feature:639515-639610:-1:exon
so has part: feature:638293-638931:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:647002-647592:-1:exon

position:647002:-1
position: 647002
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:646240-646312:-1:exon

position:646240:-1
position: 646240
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:646312:-1
position: 646312
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:646033-646129:-1:exon

position:646033:-1
position: 646033
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:646129:-1
position: 646129
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:645484-645619:-1:exon

position:645484:-1
position: 645484
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:645619:-1
position: 645619
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:645073-645176:-1:exon

position:645073:-1
position: 645073
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:645176:-1
position: 645176
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:644105-644340:-1:exon

position:644105:-1
position: 644105
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:644340:-1
position: 644340
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:643733-643787:-1:exon

position:643733:-1
position: 643733
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:643787:-1
position: 643787
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:643540-643578:-1:exon

position:643540:-1
position: 643540
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:643578:-1
position: 643578
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:643340-643424:-1:exon

position:643340:-1
position: 643340
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:643424:-1
position: 643424
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:642394-642543:-1:exon

position:642394:-1
position: 642394
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:642543:-1
position: 642543
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:641850-641981:-1:exon

position:641850:-1
position: 641850
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:641981:-1
position: 641981
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:641203-641406:-1:exon

position:641203:-1
position: 641203
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:641406:-1
position: 641406
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:640379-640458:-1:exon

position:640379:-1
position: 640379
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:640458:-1
position: 640458
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:639917-640001:-1:exon

position:639917:-1
position: 639917
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:640001:-1
position: 640001
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:639515-639610:-1:exon

position:639515:-1
position: 639515
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:639610:-1
position: 639610
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:638293-638931:-1:exon

position:638931:-1
position: 638931
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

SENP1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: SENP1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: sentrin-specific protease 1
translation: MTPIGPHPPQNDPYRVTAPQSDPCRVTPPRRTPPLRAAALHLRAARRRSPLPAARSPPVAPLPAAARLRRSLPLPPSPPRRRRGARENRARSGRFRFHFRFRSGRLRGAKRRRRRLRAPLRSRVPLRSRVPLRSRSPLRSRCPHTAFRRRRRAFPRARFRRCPAARPMRMEAREAARARPSPAFKGFGADSKFFLPKLSSFSCPAGNSSCSLSYAPEIPERFPGANGQWRSSKPRGSRGSFLETRKNSSGNSSTFGGKSALHGASFPLKPAPSPSWSRRSPKKAPRRFLSAAEETVREEEREIYRQLLQMVTGKRFSSCKPAPLLPFHLSRCPRSGPSLPPEAPRDDPEALEIHKIPGPVPHSPEPPQNSQNPPLGPSPGFPGGFQPRNSAAPQQREEEPGAEAQSKGSDSVILLKVKDSRTPAPSLPFFQAELWIKELTSVYDSRARERWRQIEEQKALALQLQSQRLQERERSGQDLVDLHLRVPLEKEIPVAVGPEGPERARPQPDEEFPEITEEMEKEIKSLFRGGNQDEVLSEAFRLTITRKDIQTLNNLNWLNDEIINFYMNLLMERSKDKDLPTVHAFNTFFFTKLKTAGYQAVKRWTKKVDIFSVDLLLVPIHLGVHWCLAVVDFRKKTITYYDSMGGINSEACRILLQYLKQESLDKKRKEFDTNGWALLSKKSQEIPQQMNGSDCGMFACRYAECISKDKPINFTQQHMPYFRKRMAWEILHRKLL
SIO_010081: SENP1
subclass of: SO_0000673
so part of: SENP1
location: complement(join(638869..638931,639515..639610,639917..640001,640379..640458,641203..641406,641850..641981,642394..642543,643340..643424,643540..643578,643733..643787,644105..644340,645073..645176,645484..645619,646033..646129,646240..646312,647002..647577))
location: region:638869-647577:-1
so has part: feature:647002-647577:-1:exon
so has part: feature:646240-646312:-1:exon
so has part: feature:646033-646129:-1:exon
so has part: feature:645484-645619:-1:exon
so has part: feature:645073-645176:-1:exon
so has part: feature:644105-644340:-1:exon
so has part: feature:643733-643787:-1:exon
so has part: feature:643540-643578:-1:exon
so has part: feature:643340-643424:-1:exon
so has part: feature:642394-642543:-1:exon
so has part: feature:641850-641981:-1:exon
so has part: feature:641203-641406:-1:exon
so has part: feature:640379-640458:-1:exon
so has part: feature:639917-640001:-1:exon
so has part: feature:639515-639610:-1:exon
so has part: feature:638869-638931:-1:exon

XP_030115222.3
type: Protein
SIO_000068: ncbiprotein

position:638869:-1
position: 638869
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:647577:-1
position: 647577
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:647002-647577:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:646240-646312:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:646033-646129:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:645484-645619:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:645073-645176:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:644105-644340:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:643733-643787:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:643540-643578:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:643340-643424:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:642394-642543:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:641850-641981:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:641203-641406:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:640379-640458:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:639917-640001:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:639515-639610:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:638869-638931:-1:exon

PFKM
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: PFKM
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 648312..658152
location: region:648312-658152:1
so has part: feature:648312-658152:1:exon
subclass of: SO_0000010

101233004
type: Gene
SIO_000068: ncbigene

position:648312:1
position: 648312
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:658152:1
position: 658152
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:648312-658152:1:exon

PFKM
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: PFKM
product: phosphofructokinase, muscle
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, 29 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 13 samples with support for all annotated introns
transcript id: XM_041711533.1
SIO_010081: PFKM
subclass of: SO_0000673
so part of: PFKM
location: join(648312..648361,649684..649782,650539..650612,650706..650783,651081..651270,651897..652062,652140..652184,652272..652380,652824..652919,653007..653099,653193..653318,653589..653653,653737..653800,654423..654569,655212..655282,655371..655458,655659..655811,656339..656503,656614..656675,656873..656984,657102..657201,657589..657694,657795..658152)
location: region:648312-658152:1
so has part: feature:648312-648361:1:exon
so has part: feature:649684-649782:1:exon
so has part: feature:650539-650612:1:exon
so has part: feature:650706-650783:1:exon
so has part: feature:651081-651270:1:exon
so has part: feature:651897-652062:1:exon
so has part: feature:652140-652184:1:exon
so has part: feature:652272-652380:1:exon
so has part: feature:652824-652919:1:exon
so has part: feature:653007-653099:1:exon
so has part: feature:653193-653318:1:exon
so has part: feature:653589-653653:1:exon
so has part: feature:653737-653800:1:exon
so has part: feature:654423-654569:1:exon
so has part: feature:655212-655282:1:exon
so has part: feature:655371-655458:1:exon
so has part: feature:655659-655811:1:exon
so has part: feature:656339-656503:1:exon
so has part: feature:656614-656675:1:exon
so has part: feature:656873-656984:1:exon
so has part: feature:657102-657201:1:exon
so has part: feature:657589-657694:1:exon
so has part: feature:657795-658152:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:648312-648361:1:exon

position:648361:1
position: 648361
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:649684-649782:1:exon

position:649684:1
position: 649684
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:649782:1
position: 649782
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:650539-650612:1:exon

position:650539:1
position: 650539
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:650612:1
position: 650612
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:650706-650783:1:exon

position:650706:1
position: 650706
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:650783:1
position: 650783
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:651081-651270:1:exon

position:651081:1
position: 651081
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:651270:1
position: 651270
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:651897-652062:1:exon

position:651897:1
position: 651897
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:652062:1
position: 652062
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:652140-652184:1:exon

position:652140:1
position: 652140
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:652184:1
position: 652184
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:652272-652380:1:exon

position:652272:1
position: 652272
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:652380:1
position: 652380
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:652824-652919:1:exon

position:652824:1
position: 652824
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:652919:1
position: 652919
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:653007-653099:1:exon

position:653007:1
position: 653007
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:653099:1
position: 653099
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:653193-653318:1:exon

position:653193:1
position: 653193
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:653318:1
position: 653318
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:653589-653653:1:exon

position:653589:1
position: 653589
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:653653:1
position: 653653
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:653737-653800:1:exon

position:653737:1
position: 653737
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:653800:1
position: 653800
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:654423-654569:1:exon

position:654423:1
position: 654423
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:654569:1
position: 654569
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:655212-655282:1:exon

position:655212:1
position: 655212
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:655282:1
position: 655282
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:655371-655458:1:exon

position:655371:1
position: 655371
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:655458:1
position: 655458
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:655659-655811:1:exon

position:655659:1
position: 655659
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:655811:1
position: 655811
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:656339-656503:1:exon

position:656339:1
position: 656339
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:656503:1
position: 656503
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:656614-656675:1:exon

position:656614:1
position: 656614
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:656675:1
position: 656675
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:656873-656984:1:exon

position:656873:1
position: 656873
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:656984:1
position: 656984
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:657102-657201:1:exon

position:657102:1
position: 657102
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:657201:1
position: 657201
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 22
SIO_000628: feature:657589-657694:1:exon

position:657589:1
position: 657589
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:657694:1
position: 657694
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 23
SIO_000628: feature:657795-658152:1:exon

position:657795:1
position: 657795
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

PFKM
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: PFKM
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ATP-dependent 6-phosphofructokinase, muscle type
translation: MPPSPAGPQHAETLGVGKAIAVLTSGGDAQGMNAAVRAVVRVGIYTGAKVFFVCEGYQGLVDGGDHIKEATWESVSMMLQLGGTVIGSARCQDFRAREGRLRAARNLVKRGITNLCVIGGDGSLTGADTFRAEWGGLLAELLKTGGITAEEAQRSSHLNIVGMVGSIDNDFCGTDMTIGTDSALHRIIEIVDAITTTAQSHQRTFVLEVMGRHCGYLALITALACGADWVFIPESPPEDDWEEHLCRRLAETRDGGSRLNIIIVAEGAIDKHGKAITSDDIKSLVVKRLGYDTRVTILGHVQRGGTPSAFDRILASRMGVEAVMALLEGTPDTPACVVSLSGNQAVRLPLMECVQVTKDVTTAMNEGRFEDAVKLRGRSFQNNWNVYKLLAHIRPPATKSGYTVAVMNVGAPAAGMNAAVRATVRIGLIHGHRMLAVHDGFEGLAFGMVEEISWNTVGSWTGLGGSKLGTKRTLPKKYFEEISANISKFGIHGLIIIGGFEAFTGGLEMVEGRARFEELCIPLCIVPATVSNNVPGSDFSIGADTALNTITTTCDLIKQSAAGTKRRVFIIETMGGFCGYLATMAGLAAGADAAYIFEEPFSSRDLQANVDHLIEKMKTTVKRGLVLRNERCNENYTTDFIYNLYSEEGKGVFDCRKNVLGHMQQGGSPTPFDRNFGTKMGAKAVAWITGKIKECSRHGRIFANTADSACLLGMRKRSLVFQPIAELRQQTDFEHRIPKEQWWLRLRPILKILAKYNIELDTSETAHLEHLTRKVLVPEATL
SIO_010081: PFKM
subclass of: SO_0000673
so part of: PFKM
location: join(649692..649782,650539..650612,650706..650783,651081..651270,651897..652062,652140..652184,652272..652380,652824..652919,653007..653099,653193..653318,653589..653653,653737..653800,654423..654569,655212..655282,655371..655458,655659..655811,656339..656503,656614..656675,656873..656984,657102..657201,657589..657694,657795..657942)
location: region:649692-657942:1
so has part: feature:649692-649782:1:exon
so has part: feature:650539-650612:1:exon
so has part: feature:650706-650783:1:exon
so has part: feature:651081-651270:1:exon
so has part: feature:651897-652062:1:exon
so has part: feature:652140-652184:1:exon
so has part: feature:652272-652380:1:exon
so has part: feature:652824-652919:1:exon
so has part: feature:653007-653099:1:exon
so has part: feature:653193-653318:1:exon
so has part: feature:653589-653653:1:exon
so has part: feature:653737-653800:1:exon
so has part: feature:654423-654569:1:exon
so has part: feature:655212-655282:1:exon
so has part: feature:655371-655458:1:exon
so has part: feature:655659-655811:1:exon
so has part: feature:656339-656503:1:exon
so has part: feature:656614-656675:1:exon
so has part: feature:656873-656984:1:exon
so has part: feature:657102-657201:1:exon
so has part: feature:657589-657694:1:exon
so has part: feature:657795-657942:1:exon

XP_041567467.1
type: Protein
SIO_000068: ncbiprotein

position:649692:1
position: 649692
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:657942:1
position: 657942
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:649692-649782:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:650539-650612:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:650706-650783:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:651081-651270:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:651897-652062:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:652140-652184:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:652272-652380:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:652824-652919:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:653007-653099:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:653193-653318:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:653589-653653:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:653737-653800:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:654423-654569:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:655212-655282:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:655371-655458:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:655659-655811:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:656339-656503:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:656614-656675:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:656873-656984:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:657102-657201:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:657589-657694:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:657795-657942:1:exon

ASB8
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: ASB8
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(658524..661695)
location: region:658524-661695:-1
so has part: feature:658524-661695:-1:exon
subclass of: SO_0000010

115491442
type: Gene
SIO_000068: ncbigene

position:658524:-1
position: 658524
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:661695:-1
position: 661695
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:658524-661695:-1:exon

ASB8
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: ASB8
product: ankyrin repeat and SOCS box containing 8, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 2 Proteins, and 96% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_030259529.3
SIO_010081: ASB8
subclass of: SO_0000673
so part of: ASB8
location: complement(join(658524..659699,660327..660478,661322..661695))
location: region:658524-661695:-1
so has part: feature:661322-661695:-1:exon
so has part: feature:660327-660478:-1:exon
so has part: feature:658524-659699:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:661322-661695:-1:exon

position:661322:-1
position: 661322
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:660327-660478:-1:exon

position:660327:-1
position: 660327
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:660478:-1
position: 660478
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:658524-659699:-1:exon

position:659699:-1
position: 659699
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

ASB8
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: ASB8
product: ankyrin repeat and SOCS box containing 8, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs, 12 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 155 samples with support for all annotated introns
transcript id: XM_030259528.3
SIO_010081: ASB8
subclass of: SO_0000673
so part of: ASB8
location: complement(join(658524..659699,660327..660431,661322..661691))
location: region:658524-661691:-1
so has part: feature:661322-661691:-1:exon
so has part: feature:660327-660431:-1:exon
so has part: feature:658524-659699:-1:exon

position:661691:-1
position: 661691
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:661322-661691:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:660327-660431:-1:exon

position:660431:-1
position: 660431
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:658524-659699:-1:exon

ASB8
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: ASB8
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ankyrin repeat and SOCS box protein 8 isoform X2
translation: MPRRGPRHVVHHAEHSEQVLAVRAPHPHHRRHPLLPAGQRGGSHRPGMERGEFLTGGSSAPQGADVNCLHGTLKPLHCACMVADADCVELLLQKGAEVNALDGYNRTALHYAAEKDETCVEILLEYGANPNALDGNKDTPLHWAAFKNNAECVRALLANGALVNALDYNNDTPLSWAAMKGNLESVSVLLDFGAEVRVVNLKGQSPISRLVALLVRGLGTEREDSCLDLLHRATGHFELRKNGSLPWEVARDPQLCQRLTLLCSAPGTLQALSRYAVRRSLGLRFLPQAVQQLPLPACLKEYLLLLT
SIO_010081: ASB8
subclass of: SO_0000673
so part of: ASB8
location: complement(join(659067..659699,660327..660478,661322..661460))
location: region:659067-661460:-1
so has part: feature:661322-661460:-1:exon
so has part: feature:660327-660478:-1:exon
so has part: feature:659067-659699:-1:exon

XP_030115389.3
type: Protein
SIO_000068: ncbiprotein

position:659067:-1
position: 659067
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:661460:-1
position: 661460
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:661322-661460:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:660327-660478:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:659067-659699:-1:exon

ASB8
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: ASB8
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ankyrin repeat and SOCS box protein 8 isoform X1
translation: MWYIMQSIQSKYSLSERLIRTIAAIRSFPRDNVEDLIGRGADVNCLHGTLKPLHCACMVADADCVELLLQKGAEVNALDGYNRTALHYAAEKDETCVEILLEYGANPNALDGNKDTPLHWAAFKNNAECVRALLANGALVNALDYNNDTPLSWAAMKGNLESVSVLLDFGAEVRVVNLKGQSPISRLVALLVRGLGTEREDSCLDLLHRATGHFELRKNGSLPWEVARDPQLCQRLTLLCSAPGTLQALSRYAVRRSLGLRFLPQAVQQLPLPACLKEYLLLLT
SIO_010081: ASB8
subclass of: SO_0000673
so part of: ASB8
location: complement(join(659067..659699,660327..660431,661322..661438))
location: region:659067-661438:-1
so has part: feature:661322-661438:-1:exon
so has part: feature:660327-660431:-1:exon
so has part: feature:659067-659699:-1:exon

XP_030115388.3
type: Protein
SIO_000068: ncbiprotein

position:661438:-1
position: 661438
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:661322-661438:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:660327-660431:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:659067-659699:-1:exon

RNF212B
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: RNF212B
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(662067..664979)
location: region:662067-664979:-1
so has part: feature:662067-664979:-1:exon
subclass of: SO_0000010

115491454
type: Gene
SIO_000068: ncbigene

position:662067:-1
position: 662067
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:664979:-1
position: 664979
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:662067-664979:-1:exon

RNF212B
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: RNF212B
product: ring finger protein 212B
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XM_030259554.3
SIO_010081: RNF212B
subclass of: SO_0000673
so part of: RNF212B
location: complement(join(662067..662250,662625..662656,662976..663024,663099..663150,663238..663280,663386..663461,663590..663638,663935..664050,664145..664219,664321..664373,664759..664979))
location: region:662067-664979:-1
so has part: feature:664759-664979:-1:exon
so has part: feature:664321-664373:-1:exon
so has part: feature:664145-664219:-1:exon
so has part: feature:663935-664050:-1:exon
so has part: feature:663590-663638:-1:exon
so has part: feature:663386-663461:-1:exon
so has part: feature:663238-663280:-1:exon
so has part: feature:663099-663150:-1:exon
so has part: feature:662976-663024:-1:exon
so has part: feature:662625-662656:-1:exon
so has part: feature:662067-662250:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:664759-664979:-1:exon

position:664759:-1
position: 664759
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:664321-664373:-1:exon

position:664321:-1
position: 664321
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:664373:-1
position: 664373
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:664145-664219:-1:exon

position:664145:-1
position: 664145
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:664219:-1
position: 664219
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:663935-664050:-1:exon

position:663935:-1
position: 663935
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:664050:-1
position: 664050
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:663590-663638:-1:exon

position:663590:-1
position: 663590
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:663638:-1
position: 663638
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:663386-663461:-1:exon

position:663386:-1
position: 663386
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:663461:-1
position: 663461
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:663238-663280:-1:exon

position:663238:-1
position: 663238
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:663280:-1
position: 663280
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:663099-663150:-1:exon

position:663099:-1
position: 663099
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:663150:-1
position: 663150
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:662976-663024:-1:exon

position:662976:-1
position: 662976
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:663024:-1
position: 663024
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:662625-662656:-1:exon

position:662625:-1
position: 662625
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:662656:-1
position: 662656
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:662067-662250:-1:exon

position:662250:-1
position: 662250
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

RNF212B
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: RNF212B
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: RING finger protein 212B
translation: MDWFHCSRCFRQDGARFAITNCGHILCEGCGGTDPCPVCGAACRYLPLSEQMRPQEKVFFKNPAAIALKHLDQITQVWRFQTAQVQLLLDLHRDRAQRAQAELQKAREELRERTRELESLRRENEELRRMQISSQLSPAWHWSSRTSTPRPSPTQSVTPQPRRQLSSQVVSRLPPLEPPQSRSTLGWQVGIAYRNSGTPLASGMVPALAGTSEGQGSALRLARGGRSQWDLNPRP
SIO_010081: RNF212B
subclass of: SO_0000673
so part of: RNF212B
location: complement(join(662188..662250,662625..662656,662976..663024,663099..663150,663238..663280,663386..663461,663590..663638,663935..664050,664145..664219,664321..664373,664759..664858))
location: region:662188-664858:-1
so has part: feature:664759-664858:-1:exon
so has part: feature:664321-664373:-1:exon
so has part: feature:664145-664219:-1:exon
so has part: feature:663935-664050:-1:exon
so has part: feature:663590-663638:-1:exon
so has part: feature:663386-663461:-1:exon
so has part: feature:663238-663280:-1:exon
so has part: feature:663099-663150:-1:exon
so has part: feature:662976-663024:-1:exon
so has part: feature:662625-662656:-1:exon
so has part: feature:662188-662250:-1:exon

XP_030115414.3
type: Protein
SIO_000068: ncbiprotein

position:662188:-1
position: 662188
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:664858:-1
position: 664858
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:664759-664858:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:664321-664373:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:664145-664219:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:663935-664050:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:663590-663638:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:663386-663461:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:663238-663280:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:663099-663150:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:662976-663024:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:662625-662656:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:662188-662250:-1:exon

LOC105758775
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: LOC105758775
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 666452..671482
location: region:666452-671482:1
so has part: feature:666452-671482:1:exon
subclass of: SO_0000010

105758775
type: Gene
SIO_000068: ncbigene

position:666452:1
position: 666452
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:671482:1
position: 671482
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:666452-671482:1:exon

LOC105758775
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: LOC105758775
product: zinc finger protein 629-like, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 17 samples with support for all annotated introns
transcript id: XM_041711641.1
SIO_010081: LOC105758775
subclass of: SO_0000673
so part of: LOC105758775
location: join(666452..667283,668947..669030,669636..670481,670669..671482)
location: region:666452-671482:1
so has part: feature:666452-667283:1:exon
so has part: feature:668947-669030:1:exon
so has part: feature:669636-670481:1:exon
so has part: feature:670669-671482:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:666452-667283:1:exon

position:667283:1
position: 667283
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:668947-669030:1:exon

position:668947:1
position: 668947
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:669030:1
position: 669030
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:669636-670481:1:exon

position:669636:1
position: 669636
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:670481:1
position: 670481
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:670669-671482:1:exon

position:670669:1
position: 670669
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC105758775
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: LOC105758775
product: zinc finger protein 629-like, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 30 samples with support for all annotated introns
transcript id: XM_041711640.1
SIO_010081: LOC105758775
subclass of: SO_0000673
so part of: LOC105758775
location: join(666454..667283,668947..669030,669636..671482)
location: region:666454-671482:1
so has part: feature:666454-667283:1:exon
so has part: feature:668947-669030:1:exon
so has part: feature:669636-671482:1:exon

position:666454:1
position: 666454
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:666454-667283:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:668947-669030:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:669636-671482:1:exon

LOC105758775
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: LOC105758775
product: zinc finger protein 629-like, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 78 samples with support for all annotated introns
transcript id: XM_032744886.2
SIO_010081: LOC105758775
subclass of: SO_0000673
so part of: LOC105758775
location: join(666454..667283,668956..669030,669636..671482)
location: region:666454-671482:1
so has part: feature:666454-667283:1:exon
so has part: feature:668956-669030:1:exon
so has part: feature:669636-671482:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:666454-667283:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:668956-669030:1:exon

position:668956:1
position: 668956
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:669636-671482:1:exon

LOC105758775
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: LOC105758775
product: zinc finger protein 629-like, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 38 samples with support for all annotated introns
transcript id: XM_032744887.2
SIO_010081: LOC105758775
subclass of: SO_0000673
so part of: LOC105758775
location: join(666454..667235,668947..669030,669636..671482)
location: region:666454-671482:1
so has part: feature:666454-667235:1:exon
so has part: feature:668947-669030:1:exon
so has part: feature:669636-671482:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:666454-667235:1:exon

position:667235:1
position: 667235
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:668947-669030:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:669636-671482:1:exon

LOC105758775
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: LOC105758775
product: zinc finger protein 629-like, transcript variant X5
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 84 samples with support for all annotated introns
transcript id: XM_032744888.2
SIO_010081: LOC105758775
subclass of: SO_0000673
so part of: LOC105758775
location: join(666455..667235,668956..669030,669636..671482)
location: region:666455-671482:1
so has part: feature:666455-667235:1:exon
so has part: feature:668956-669030:1:exon
so has part: feature:669636-671482:1:exon

position:666455:1
position: 666455
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:666455-667235:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:668956-669030:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:669636-671482:1:exon

LOC105758775
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: LOC105758775
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: zinc finger protein 787-like isoform X1
translation: MTGPSCSRPRARLAPGGPPRHEPPAAPSPAGPPEPPPEPSATPPAPPAPRSRRGESGGAARAKRRFWGEVPAGAPMEQDEPDVVELQDSDEGDVVFIADGGIVSDGEAEVLPHESTRTVIPHSPLCPPPPRGTPAPAPGGSEEGGGRRGGGRQRPFICNECGKSFSHWSKLLRHQRTHTGERPSTCGECGKSFSQNSHLVQHRRTHTGEKPYSCGHCGKSFSWSSNLIQHQRIHTGERPYGCAECGKSFTQSKNLIKHERTHAGPGAARPRRCAHPAGAPRALKGPRAGGEGEGPAGASGGCGQEPLICVECGDCFAQSAALRKHRRGHRPLFVPWENAEERAQGQPGTVLAPLGTVAPGHGDMGHCALFQP
SIO_010081: LOC105758775
subclass of: SO_0000673
so part of: LOC105758775
location: join(667076..667283,668947..669030,669636..670462)
location: region:667076-670462:1
so has part: feature:667076-667283:1:exon
so has part: feature:668947-669030:1:exon
so has part: feature:669636-670462:1:exon

XP_041567574.1
type: Protein
SIO_000068: ncbiprotein

position:667076:1
position: 667076
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:670462:1
position: 670462
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:667076-667283:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:668947-669030:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:669636-670462:1:exon

LOC105758775
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: LOC105758775
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: zinc finger protein 787-like isoform X1
translation: MTGPSCSRPRARLAPGGPPRHEPPAAPSPAGPPEPPPEPSATPPAPPAPRSRRGESGGAARAKRRFWGEVPAGAPMEQDEPDVVELQDSDEGDVVFIADGGIVSDGEAEVLPHESTRTVIPHSPLCPPPPRGTPAPAPGGSEEGGGRRGGGRQRPFICNECGKSFSHWSKLLRHQRTHTGERPSTCGECGKSFSQNSHLVQHRRTHTGEKPYSCGHCGKSFSWSSNLIQHQRIHTGERPYGCAECGKSFTQSKNLIKHERTHAGPGAARPRRCAHPAGAPRALKGPRAGGEGEGPAGASGGCGQEPLICVECGDCFAQSAALRKHRRGHRPLFVPWENAEERAQGQPGTVLAPLGTVAPGHGDMGHCALFQP
SIO_010081: LOC105758775
subclass of: SO_0000673
so part of: LOC105758775
location: join(667076..667283,668947..669030,669636..670462)
location: region:667076-670462:1
so has part: feature:667076-667283:1:exon
so has part: feature:668947-669030:1:exon
so has part: feature:669636-670462:1:exon

XP_041567575.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:667076-667283:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:668947-669030:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:669636-670462:1:exon

LOC105758775
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: LOC105758775
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: zinc finger protein 316-like isoform X2
translation: MTGPSCSRPRARLAPGGPPRHEPPAAPSPAGPPEPPPEPSATPPAPPAPRSRRGESGGAARAKRRFWGEGAPMEQDEPDVVELQDSDEGDVVFIADGGIVSDGEAEVLPHESTRTVIPHSPLCPPPPRGTPAPAPGGSEEGGGRRGGGRQRPFICNECGKSFSHWSKLLRHQRTHTGERPSTCGECGKSFSQNSHLVQHRRTHTGEKPYSCGHCGKSFSWSSNLIQHQRIHTGERPYGCAECGKSFTQSKNLIKHERTHAGPGAARPRRCAHPAGAPRALKGPRAGGEGEGPAGASGGCGQEPLICVECGDCFAQSAALRKHRRGHRPLFVPWENAEERAQGQPGTVLAPLGTVAPGHGDMGHCALFQP
SIO_010081: LOC105758775
subclass of: SO_0000673
so part of: LOC105758775
location: join(667076..667283,668956..669030,669636..670462)
location: region:667076-670462:1
so has part: feature:667076-667283:1:exon
so has part: feature:668956-669030:1:exon
so has part: feature:669636-670462:1:exon

XP_032600777.2
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:667076-667283:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:668956-669030:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:669636-670462:1:exon

LOC105758775
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: LOC105758775
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: zinc finger protein 629-like isoform X3
translation: MTGPSCSRPRARLAPGGPPRHEPPAAPSPAGPPEPPPEPSATPPAPPAPRSRRVPAGAPMEQDEPDVVELQDSDEGDVVFIADGGIVSDGEAEVLPHESTRTVIPHSPLCPPPPRGTPAPAPGGSEEGGGRRGGGRQRPFICNECGKSFSHWSKLLRHQRTHTGERPSTCGECGKSFSQNSHLVQHRRTHTGEKPYSCGHCGKSFSWSSNLIQHQRIHTGERPYGCAECGKSFTQSKNLIKHERTHAGPGAARPRRCAHPAGAPRALKGPRAGGEGEGPAGASGGCGQEPLICVECGDCFAQSAALRKHRRGHRPLFVPWENAEERAQGQPGTVLAPLGTVAPGHGDMGHCALFQP
SIO_010081: LOC105758775
subclass of: SO_0000673
so part of: LOC105758775
location: join(667076..667235,668947..669030,669636..670462)
location: region:667076-670462:1
so has part: feature:667076-667235:1:exon
so has part: feature:668947-669030:1:exon
so has part: feature:669636-670462:1:exon

XP_032600778.2
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:667076-667235:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:668947-669030:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:669636-670462:1:exon

LOC105758775
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: LOC105758775
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: zinc finger protein 629-like isoform X4
translation: MTGPSCSRPRARLAPGGPPRHEPPAAPSPAGPPEPPPEPSATPPAPPAPRSRRGAPMEQDEPDVVELQDSDEGDVVFIADGGIVSDGEAEVLPHESTRTVIPHSPLCPPPPRGTPAPAPGGSEEGGGRRGGGRQRPFICNECGKSFSHWSKLLRHQRTHTGERPSTCGECGKSFSQNSHLVQHRRTHTGEKPYSCGHCGKSFSWSSNLIQHQRIHTGERPYGCAECGKSFTQSKNLIKHERTHAGPGAARPRRCAHPAGAPRALKGPRAGGEGEGPAGASGGCGQEPLICVECGDCFAQSAALRKHRRGHRPLFVPWENAEERAQGQPGTVLAPLGTVAPGHGDMGHCALFQP
SIO_010081: LOC105758775
subclass of: SO_0000673
so part of: LOC105758775
location: join(667076..667235,668956..669030,669636..670462)
location: region:667076-670462:1
so has part: feature:667076-667235:1:exon
so has part: feature:668956-669030:1:exon
so has part: feature:669636-670462:1:exon

XP_032600779.2
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:667076-667235:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:668956-669030:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:669636-670462:1:exon

LIMA1
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: LIMA1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(672470..695239)
location: region:672470-695239:-1
so has part: feature:672470-695239:-1:exon
subclass of: SO_0000010

115491389
type: Gene
SIO_000068: ncbigene

position:672470:-1
position: 672470
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:695239:-1
position: 695239
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:672470-695239:-1:exon

LIMA1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: LIMA1
product: LIM domain and actin binding 1, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 ESTs, 2 long SRA reads, 15 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 40 samples with support for all annotated introns
transcript id: XM_030259356.3
SIO_010081: LIMA1
subclass of: SO_0000673
so part of: LIMA1
location: complement(join(672470..674624,674994..675127,677895..678007,678280..678337,680116..680220,682438..682598,683354..683459,687710..688015,689865..689910,691816..691951,695116..695239))
location: region:672470-695239:-1
so has part: feature:695116-695239:-1:exon
so has part: feature:691816-691951:-1:exon
so has part: feature:689865-689910:-1:exon
so has part: feature:687710-688015:-1:exon
so has part: feature:683354-683459:-1:exon
so has part: feature:682438-682598:-1:exon
so has part: feature:680116-680220:-1:exon
so has part: feature:678280-678337:-1:exon
so has part: feature:677895-678007:-1:exon
so has part: feature:674994-675127:-1:exon
so has part: feature:672470-674624:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:695116-695239:-1:exon

position:695116:-1
position: 695116
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:691816-691951:-1:exon

position:691816:-1
position: 691816
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:691951:-1
position: 691951
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:689865-689910:-1:exon

position:689865:-1
position: 689865
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:689910:-1
position: 689910
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:687710-688015:-1:exon

position:687710:-1
position: 687710
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:688015:-1
position: 688015
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:683354-683459:-1:exon

position:683354:-1
position: 683354
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:683459:-1
position: 683459
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:682438-682598:-1:exon

position:682438:-1
position: 682438
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:682598:-1
position: 682598
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:680116-680220:-1:exon

position:680116:-1
position: 680116
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:680220:-1
position: 680220
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:678280-678337:-1:exon

position:678280:-1
position: 678280
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:678337:-1
position: 678337
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:677895-678007:-1:exon

position:677895:-1
position: 677895
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:678007:-1
position: 678007
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:674994-675127:-1:exon

position:674994:-1
position: 674994
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:675127:-1
position: 675127
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:672470-674624:-1:exon

position:674624:-1
position: 674624
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LIMA1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: LIMA1
product: LIM domain and actin binding 1, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 ESTs, 3 long SRA reads, 11 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 40 samples with support for all annotated introns
transcript id: XM_030259354.3
SIO_010081: LIMA1
subclass of: SO_0000673
so part of: LIMA1
location: complement(join(672470..674624,674994..675127,677895..678007,678280..678337,680116..680220,682438..682598,683354..683462,687710..688015,689865..689910,691816..691951,695116..695239))
location: region:672470-695239:-1
so has part: feature:695116-695239:-1:exon
so has part: feature:691816-691951:-1:exon
so has part: feature:689865-689910:-1:exon
so has part: feature:687710-688015:-1:exon
so has part: feature:683354-683462:-1:exon
so has part: feature:682438-682598:-1:exon
so has part: feature:680116-680220:-1:exon
so has part: feature:678280-678337:-1:exon
so has part: feature:677895-678007:-1:exon
so has part: feature:674994-675127:-1:exon
so has part: feature:672470-674624:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:695116-695239:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:691816-691951:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:689865-689910:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:687710-688015:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:683354-683462:-1:exon

position:683462:-1
position: 683462
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:682438-682598:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:680116-680220:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:678280-678337:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:677895-678007:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:674994-675127:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:672470-674624:-1:exon

LIMA1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: LIMA1
product: LIM domain and actin binding 1, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 ESTs, 2 long SRA reads, 11 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns
transcript id: XM_030259355.3
SIO_010081: LIMA1
subclass of: SO_0000673
so part of: LIMA1
location: complement(join(672470..674624,674994..675127,677895..678007,678280..678337,680116..680220,682438..682598,683354..683462,687710..688015,689865..689910,691816..691951,695173..695223))
location: region:672470-695223:-1
so has part: feature:695173-695223:-1:exon
so has part: feature:691816-691951:-1:exon
so has part: feature:689865-689910:-1:exon
so has part: feature:687710-688015:-1:exon
so has part: feature:683354-683462:-1:exon
so has part: feature:682438-682598:-1:exon
so has part: feature:680116-680220:-1:exon
so has part: feature:678280-678337:-1:exon
so has part: feature:677895-678007:-1:exon
so has part: feature:674994-675127:-1:exon
so has part: feature:672470-674624:-1:exon

position:695223:-1
position: 695223
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:695173-695223:-1:exon

position:695173:-1
position: 695173
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:691816-691951:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:689865-689910:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:687710-688015:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:683354-683462:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:682438-682598:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:680116-680220:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:678280-678337:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:677895-678007:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:674994-675127:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:672470-674624:-1:exon

LIMA1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: LIMA1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LIM domain and actin-binding protein 1 isoform X2
translation: MEPSPFNRRQWTSQSLKITAKELSLVNRSKSSALAERFSKYQKAAEEATAEKKRSTLPAPLSRGSLSLLRKKWENPVAGSPWPSPGAGAAPGPPQGHGGDSAEPRGHCRQRGSMENCGTEKPEGSERPESPGRIEKYNVPLSKLKMMFEKGEAPQPKGPREPRRAAVGRRISEHSLSLEDWDSAQERSHSSAGYLVESSPGLSPDKAELRKNPDMPRLSETSIKDRLAKYQAAVSKQGSSSGIIPMSEIQASESELKNYKSGQKENVAPVEDSSSWQDGEKVSVGENSSSLHSGLLEDGHGGQSEMEAEAQKSVSSKQQNLGAKAAGQTEASPPKAVKKFQLPMKETCVGCQKTVYPMERLFANQQVFHISCFRCSYCNSKLSLGTYASLRGNIYCKPHFNQLFKSKGNYDEGFGHKQHKELWAGKTECEESPEKTVPGVNSPETPQSPGVEDAPIAKVGVLAASMEAKASAVPEREERPAETKKLRIAWPPPSDQSIQGSALDEGIKVLKPKWPPEEEISKPEVQEDVDLDLKKLRRSSSLKERSRPFTVAASFRTISVKGHKTENSPSPPKEERDTLKRSEELEREVVIEKKQKEKKVEHRNIQSAGEENVEEERELCGIKTAEHNVVENGQMNADTDEEEHATEEPEIPKEELLEPNSPKHSSLANVLTAKESSPNQNRKSQDVGFWEGEDMEDLSVEEQIKRNRCYEDDDDDE
SIO_010081: LIMA1
subclass of: SO_0000673
so part of: LIMA1
location: complement(join(673619..674624,674994..675127,677895..678007,678280..678337,680116..680220,682438..682598,683354..683459,687710..688015,689865..689910,691816..691934))
location: region:673619-691934:-1
so has part: feature:691816-691934:-1:exon
so has part: feature:689865-689910:-1:exon
so has part: feature:687710-688015:-1:exon
so has part: feature:683354-683459:-1:exon
so has part: feature:682438-682598:-1:exon
so has part: feature:680116-680220:-1:exon
so has part: feature:678280-678337:-1:exon
so has part: feature:677895-678007:-1:exon
so has part: feature:674994-675127:-1:exon
so has part: feature:673619-674624:-1:exon

XP_030115216.3
type: Protein
SIO_000068: ncbiprotein

position:673619:-1
position: 673619
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:691934:-1
position: 691934
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:691816-691934:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:689865-689910:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:687710-688015:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:683354-683459:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:682438-682598:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:680116-680220:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:678280-678337:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:677895-678007:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:674994-675127:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:673619-674624:-1:exon

LIMA1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: LIMA1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LIM domain and actin-binding protein 1 isoform X1
translation: MEPSPFNRRQWTSQSLKITAKELSLVNRSKSSALAERFSKYQKAAEEATAEKKRSTLPAPLSRGSLSLLRKKWENPVAGSPWPSPGAGAAPGPPQGHGGDSAEPRGHCRQRGSMENCGTEKPEGSERPESPGRIEKYNVPLSKLKMMFEKGEAPQPKQGPREPRRAAVGRRISEHSLSLEDWDSAQERSHSSAGYLVESSPGLSPDKAELRKNPDMPRLSETSIKDRLAKYQAAVSKQGSSSGIIPMSEIQASESELKNYKSGQKENVAPVEDSSSWQDGEKVSVGENSSSLHSGLLEDGHGGQSEMEAEAQKSVSSKQQNLGAKAAGQTEASPPKAVKKFQLPMKETCVGCQKTVYPMERLFANQQVFHISCFRCSYCNSKLSLGTYASLRGNIYCKPHFNQLFKSKGNYDEGFGHKQHKELWAGKTECEESPEKTVPGVNSPETPQSPGVEDAPIAKVGVLAASMEAKASAVPEREERPAETKKLRIAWPPPSDQSIQGSALDEGIKVLKPKWPPEEEISKPEVQEDVDLDLKKLRRSSSLKERSRPFTVAASFRTISVKGHKTENSPSPPKEERDTLKRSEELEREVVIEKKQKEKKVEHRNIQSAGEENVEEERELCGIKTAEHNVVENGQMNADTDEEEHATEEPEIPKEELLEPNSPKHSSLANVLTAKESSPNQNRKSQDVGFWEGEDMEDLSVEEQIKRNRCYEDDDDDE
SIO_010081: LIMA1
subclass of: SO_0000673
so part of: LIMA1
location: complement(join(673619..674624,674994..675127,677895..678007,678280..678337,680116..680220,682438..682598,683354..683462,687710..688015,689865..689910,691816..691934))
location: region:673619-691934:-1
so has part: feature:691816-691934:-1:exon
so has part: feature:689865-689910:-1:exon
so has part: feature:687710-688015:-1:exon
so has part: feature:683354-683462:-1:exon
so has part: feature:682438-682598:-1:exon
so has part: feature:680116-680220:-1:exon
so has part: feature:678280-678337:-1:exon
so has part: feature:677895-678007:-1:exon
so has part: feature:674994-675127:-1:exon
so has part: feature:673619-674624:-1:exon

XP_030115214.3
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:691816-691934:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:689865-689910:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:687710-688015:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:683354-683462:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:682438-682598:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:680116-680220:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:678280-678337:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:677895-678007:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:674994-675127:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:673619-674624:-1:exon

LIMA1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: LIMA1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LIM domain and actin-binding protein 1 isoform X1
translation: MEPSPFNRRQWTSQSLKITAKELSLVNRSKSSALAERFSKYQKAAEEATAEKKRSTLPAPLSRGSLSLLRKKWENPVAGSPWPSPGAGAAPGPPQGHGGDSAEPRGHCRQRGSMENCGTEKPEGSERPESPGRIEKYNVPLSKLKMMFEKGEAPQPKQGPREPRRAAVGRRISEHSLSLEDWDSAQERSHSSAGYLVESSPGLSPDKAELRKNPDMPRLSETSIKDRLAKYQAAVSKQGSSSGIIPMSEIQASESELKNYKSGQKENVAPVEDSSSWQDGEKVSVGENSSSLHSGLLEDGHGGQSEMEAEAQKSVSSKQQNLGAKAAGQTEASPPKAVKKFQLPMKETCVGCQKTVYPMERLFANQQVFHISCFRCSYCNSKLSLGTYASLRGNIYCKPHFNQLFKSKGNYDEGFGHKQHKELWAGKTECEESPEKTVPGVNSPETPQSPGVEDAPIAKVGVLAASMEAKASAVPEREERPAETKKLRIAWPPPSDQSIQGSALDEGIKVLKPKWPPEEEISKPEVQEDVDLDLKKLRRSSSLKERSRPFTVAASFRTISVKGHKTENSPSPPKEERDTLKRSEELEREVVIEKKQKEKKVEHRNIQSAGEENVEEERELCGIKTAEHNVVENGQMNADTDEEEHATEEPEIPKEELLEPNSPKHSSLANVLTAKESSPNQNRKSQDVGFWEGEDMEDLSVEEQIKRNRCYEDDDDDE
SIO_010081: LIMA1
subclass of: SO_0000673
so part of: LIMA1
location: complement(join(673619..674624,674994..675127,677895..678007,678280..678337,680116..680220,682438..682598,683354..683462,687710..688015,689865..689910,691816..691934))
location: region:673619-691934:-1
so has part: feature:691816-691934:-1:exon
so has part: feature:689865-689910:-1:exon
so has part: feature:687710-688015:-1:exon
so has part: feature:683354-683462:-1:exon
so has part: feature:682438-682598:-1:exon
so has part: feature:680116-680220:-1:exon
so has part: feature:678280-678337:-1:exon
so has part: feature:677895-678007:-1:exon
so has part: feature:674994-675127:-1:exon
so has part: feature:673619-674624:-1:exon

XP_030115215.3
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:691816-691934:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:689865-689910:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:687710-688015:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:683354-683462:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:682438-682598:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:680116-680220:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:678280-678337:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:677895-678007:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:674994-675127:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:673619-674624:-1:exon

LARP4
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: LARP4
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 703635..725114
location: region:703635-725114:1
so has part: feature:703635-725114:1:exon
subclass of: SO_0000010

115491385
type: Gene
SIO_000068: ncbigene

position:703635:1
position: 703635
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:725114:1
position: 725114
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:703635-725114:1:exon

LARP4
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: LARP4
product: La ribonucleoprotein 4, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 ESTs, 13 long SRA reads, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 63 samples with support for all annotated introns
transcript id: XM_030259339.3
SIO_010081: LARP4
subclass of: SO_0000673
so part of: LARP4
location: join(703635..703763,708672..708819,709918..710076,710389..710464,710826..710962,711192..711295,712250..712360,712699..712752,713356..713565,714011..714114,717569..717793,718444..718492,718693..718851,719352..719470,720271..720436,720553..725114)
location: region:703635-725114:1
so has part: feature:703635-703763:1:exon
so has part: feature:708672-708819:1:exon
so has part: feature:709918-710076:1:exon
so has part: feature:710389-710464:1:exon
so has part: feature:710826-710962:1:exon
so has part: feature:711192-711295:1:exon
so has part: feature:712250-712360:1:exon
so has part: feature:712699-712752:1:exon
so has part: feature:713356-713565:1:exon
so has part: feature:714011-714114:1:exon
so has part: feature:717569-717793:1:exon
so has part: feature:718444-718492:1:exon
so has part: feature:718693-718851:1:exon
so has part: feature:719352-719470:1:exon
so has part: feature:720271-720436:1:exon
so has part: feature:720553-725114:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:703635-703763:1:exon

position:703763:1
position: 703763
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:708672-708819:1:exon

position:708672:1
position: 708672
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:708819:1
position: 708819
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:709918-710076:1:exon

position:709918:1
position: 709918
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:710076:1
position: 710076
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:710389-710464:1:exon

position:710389:1
position: 710389
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:710464:1
position: 710464
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:710826-710962:1:exon

position:710826:1
position: 710826
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:710962:1
position: 710962
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:711192-711295:1:exon

position:711192:1
position: 711192
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:711295:1
position: 711295
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:712250-712360:1:exon

position:712250:1
position: 712250
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:712360:1
position: 712360
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:712699-712752:1:exon

position:712699:1
position: 712699
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:712752:1
position: 712752
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:713356-713565:1:exon

position:713356:1
position: 713356
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:713565:1
position: 713565
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:714011-714114:1:exon

position:714011:1
position: 714011
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:714114:1
position: 714114
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:717569-717793:1:exon

position:717569:1
position: 717569
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:717793:1
position: 717793
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:718444-718492:1:exon

position:718444:1
position: 718444
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:718492:1
position: 718492
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:718693-718851:1:exon

position:718693:1
position: 718693
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:718851:1
position: 718851
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:719352-719470:1:exon

position:719352:1
position: 719352
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:719470:1
position: 719470
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:720271-720436:1:exon

position:720271:1
position: 720271
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:720436:1
position: 720436
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:720553-725114:1:exon

position:720553:1
position: 720553
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LARP4
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: LARP4
product: La ribonucleoprotein 4, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 ESTs, 12 long SRA reads, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 15 samples with support for all annotated introns
transcript id: XM_030259337.3
SIO_010081: LARP4
subclass of: SO_0000673
so part of: LARP4
location: join(703662..703763,708293..708467,708672..708819,709918..710076,710389..710464,710826..710962,711192..711295,712250..712360,712699..712752,713356..713565,714011..714114,717569..717793,718444..718492,718693..718851,719352..719470,720271..720436,720553..725114)
location: region:703662-725114:1
so has part: feature:703662-703763:1:exon
so has part: feature:708293-708467:1:exon
so has part: feature:708672-708819:1:exon
so has part: feature:709918-710076:1:exon
so has part: feature:710389-710464:1:exon
so has part: feature:710826-710962:1:exon
so has part: feature:711192-711295:1:exon
so has part: feature:712250-712360:1:exon
so has part: feature:712699-712752:1:exon
so has part: feature:713356-713565:1:exon
so has part: feature:714011-714114:1:exon
so has part: feature:717569-717793:1:exon
so has part: feature:718444-718492:1:exon
so has part: feature:718693-718851:1:exon
so has part: feature:719352-719470:1:exon
so has part: feature:720271-720436:1:exon
so has part: feature:720553-725114:1:exon

position:703662:1
position: 703662
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:703662-703763:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:708293-708467:1:exon

position:708293:1
position: 708293
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:708467:1
position: 708467
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:708672-708819:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:709918-710076:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:710389-710464:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:710826-710962:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:711192-711295:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:712250-712360:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:712699-712752:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:713356-713565:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:714011-714114:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:717569-717793:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:718444-718492:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:718693-718851:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:719352-719470:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:720271-720436:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:720553-725114:1:exon

LARP4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: LARP4
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: la-related protein 4 isoform X3
translation: MLLFVEQVTSKGAGLNPNAKVWQEVPQGSAEAVPPTNGTEQTWQETAAAQGTPAEGNIEISEDSCKQYEVMYSPACEAPRNGTGVDEASANGIVLATEDLGYQIYEVSGDGSSAVSTEDIRECLRKQLEFCFSRENLSKDLYLMSQMDSDQFVPIWTIANMEGIKKLTTDMDLILEVLRSSPMVQVDERGEKVRPNHKRCIIILREIPETTPIEEVKALFKNENCPKVISCEFAHNNNWYVTFQSDTDAQQAFKYLREEVKTFQGKPVMARIKAINTFFAKNGYRVVDSSVYPQPVQTQAQFASPLFMQPVYSPQQYSIYSIVPQTWSPNPAPYFETPLAPFPNGGFVNGFNTPGSYKTNAASLSIGRPFHRNRVKPHFRSSSSSEHPEGPPGAGALPMGDLGRTSSRSFVMERHSSSLTGHPEQGYAQKDPPTAQLEQNGDFGVGRGRRNVFRGRRRREDDRVSRPQPSAETKTQTPKFDLLASNFPPLPGSTAKILGEPVLESRMSDIVKGVCKEKESKDSLCPCPAPAPEEQTPSAVQPVPSVSSPSQAEPVLLSTVQPESKPEVSAPKDVASPASPPASVCPISAAKPARTNTSSPSAQASAAPALSAQEPRKLSYAEVCQKPPKEPPPVPVQPLREHRTNIVPPAKNEDNGTAEKAPEKAPHERPEARMKDFPGFRGPGAPRGAAGKIREQRRQFGRRSSPQGAPRRVGKEQFVGKEQFVGKEQFVGKEQFVGKEQFVGKEQFVGKEQYVGKEQYVGKEQYVPPRSPK
SIO_010081: LARP4
subclass of: SO_0000673
so part of: LARP4
location: join(703746..703763,708672..708819,709918..710076,710389..710464,710826..710962,711192..711295,712250..712360,712699..712752,713356..713565,714011..714114,717569..717793,718444..718492,718693..718851,719352..719470,720271..720436,720553..721035)
location: region:703746-721035:1
so has part: feature:703746-703763:1:exon
so has part: feature:708672-708819:1:exon
so has part: feature:709918-710076:1:exon
so has part: feature:710389-710464:1:exon
so has part: feature:710826-710962:1:exon
so has part: feature:711192-711295:1:exon
so has part: feature:712250-712360:1:exon
so has part: feature:712699-712752:1:exon
so has part: feature:713356-713565:1:exon
so has part: feature:714011-714114:1:exon
so has part: feature:717569-717793:1:exon
so has part: feature:718444-718492:1:exon
so has part: feature:718693-718851:1:exon
so has part: feature:719352-719470:1:exon
so has part: feature:720271-720436:1:exon
so has part: feature:720553-721035:1:exon

XP_030115199.3
type: Protein
SIO_000068: ncbiprotein

position:703746:1
position: 703746
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:721035:1
position: 721035
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:703746-703763:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:708672-708819:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:709918-710076:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:710389-710464:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:710826-710962:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:711192-711295:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:712250-712360:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:712699-712752:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:713356-713565:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:714011-714114:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:717569-717793:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:718444-718492:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:718693-718851:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:719352-719470:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:720271-720436:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:720553-721035:1:exon

LARP4
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: LARP4
product: La ribonucleoprotein 4, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 ESTs, 12 long SRA reads, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XM_041711637.1
SIO_010081: LARP4
subclass of: SO_0000673
so part of: LARP4
location: join(704540..705143,708293..708467,708672..708819,709918..710076,710389..710464,710826..710962,711192..711295,712250..712360,712699..712752,713356..713565,714011..714114,717569..717793,718444..718492,718693..718851,719352..719470,720271..720436,720553..725114)
location: region:704540-725114:1
so has part: feature:704540-705143:1:exon
so has part: feature:708293-708467:1:exon
so has part: feature:708672-708819:1:exon
so has part: feature:709918-710076:1:exon
so has part: feature:710389-710464:1:exon
so has part: feature:710826-710962:1:exon
so has part: feature:711192-711295:1:exon
so has part: feature:712250-712360:1:exon
so has part: feature:712699-712752:1:exon
so has part: feature:713356-713565:1:exon
so has part: feature:714011-714114:1:exon
so has part: feature:717569-717793:1:exon
so has part: feature:718444-718492:1:exon
so has part: feature:718693-718851:1:exon
so has part: feature:719352-719470:1:exon
so has part: feature:720271-720436:1:exon
so has part: feature:720553-725114:1:exon

position:704540:1
position: 704540
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:704540-705143:1:exon

position:705143:1
position: 705143
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:708293-708467:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:708672-708819:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:709918-710076:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:710389-710464:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:710826-710962:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:711192-711295:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:712250-712360:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:712699-712752:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:713356-713565:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:714011-714114:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:717569-717793:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:718444-718492:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:718693-718851:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:719352-719470:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:720271-720436:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:720553-725114:1:exon

LARP4
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: LARP4
product: La ribonucleoprotein 4, transcript variant X5
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 ESTs, 12 long SRA reads, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
transcript id: XM_041711638.1
SIO_010081: LARP4
subclass of: SO_0000673
so part of: LARP4
location: join(704540..705143,708672..708819,709918..710076,710389..710464,710826..710962,711192..711295,712250..712360,712699..712752,713356..713565,714011..714114,717569..717793,718444..718492,718693..718851,719352..719470,720271..720436,720553..725114)
location: region:704540-725114:1
so has part: feature:704540-705143:1:exon
so has part: feature:708672-708819:1:exon
so has part: feature:709918-710076:1:exon
so has part: feature:710389-710464:1:exon
so has part: feature:710826-710962:1:exon
so has part: feature:711192-711295:1:exon
so has part: feature:712250-712360:1:exon
so has part: feature:712699-712752:1:exon
so has part: feature:713356-713565:1:exon
so has part: feature:714011-714114:1:exon
so has part: feature:717569-717793:1:exon
so has part: feature:718444-718492:1:exon
so has part: feature:718693-718851:1:exon
so has part: feature:719352-719470:1:exon
so has part: feature:720271-720436:1:exon
so has part: feature:720553-725114:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:704540-705143:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:708672-708819:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:709918-710076:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:710389-710464:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:710826-710962:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:711192-711295:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:712250-712360:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:712699-712752:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:713356-713565:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:714011-714114:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:717569-717793:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:718444-718492:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:718693-718851:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:719352-719470:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:720271-720436:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:720553-725114:1:exon

LARP4
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: LARP4
product: La ribonucleoprotein 4, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 ESTs, 12 long SRA reads, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 39 samples with support for all annotated introns
transcript id: XM_030259338.3
SIO_010081: LARP4
subclass of: SO_0000673
so part of: LARP4
location: join(706726..708467,708675..708819,709918..710076,710389..710464,710826..710962,711192..711295,712250..712360,712699..712752,713356..713565,714011..714114,717569..717793,718444..718492,718693..718851,719352..719470,720271..720436,720553..725114)
location: region:706726-725114:1
so has part: feature:706726-708467:1:exon
so has part: feature:708675-708819:1:exon
so has part: feature:709918-710076:1:exon
so has part: feature:710389-710464:1:exon
so has part: feature:710826-710962:1:exon
so has part: feature:711192-711295:1:exon
so has part: feature:712250-712360:1:exon
so has part: feature:712699-712752:1:exon
so has part: feature:713356-713565:1:exon
so has part: feature:714011-714114:1:exon
so has part: feature:717569-717793:1:exon
so has part: feature:718444-718492:1:exon
so has part: feature:718693-718851:1:exon
so has part: feature:719352-719470:1:exon
so has part: feature:720271-720436:1:exon
so has part: feature:720553-725114:1:exon

position:706726:1
position: 706726
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:706726-708467:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:708675-708819:1:exon

position:708675:1
position: 708675
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:709918-710076:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:710389-710464:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:710826-710962:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:711192-711295:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:712250-712360:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:712699-712752:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:713356-713565:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:714011-714114:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:717569-717793:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:718444-718492:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:718693-718851:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:719352-719470:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:720271-720436:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:720553-725114:1:exon

LARP4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: LARP4
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: la-related protein 4 isoform X1
translation: MLSDVNKERLKATLLMEQVTSKGAGLNPNAKVWQEVPQGSAEAVPPTNGTEQTWQETAAAQGTPAEGNIEISEDSCKQYEVMYSPACEAPRNGTGVDEASANGIVLATEDLGYQIYEVSGDGSSAVSTEDIRECLRKQLEFCFSRENLSKDLYLMSQMDSDQFVPIWTIANMEGIKKLTTDMDLILEVLRSSPMVQVDERGEKVRPNHKRCIIILREIPETTPIEEVKALFKNENCPKVISCEFAHNNNWYVTFQSDTDAQQAFKYLREEVKTFQGKPVMARIKAINTFFAKNGYRVVDSSVYPQPVQTQAQFASPLFMQPVYSPQQYSIYSIVPQTWSPNPAPYFETPLAPFPNGGFVNGFNTPGSYKTNAASLSIGRPFHRNRVKPHFRSSSSSEHPEGPPGAGALPMGDLGRTSSRSFVMERHSSSLTGHPEQGYAQKDPPTAQLEQNGDFGVGRGRRNVFRGRRRREDDRVSRPQPSAETKTQTPKFDLLASNFPPLPGSTAKILGEPVLESRMSDIVKGVCKEKESKDSLCPCPAPAPEEQTPSAVQPVPSVSSPSQAEPVLLSTVQPESKPEVSAPKDVASPASPPASVCPISAAKPARTNTSSPSAQASAAPALSAQEPRKLSYAEVCQKPPKEPPPVPVQPLREHRTNIVPPAKNEDNGTAEKAPEKAPHERPEARMKDFPGFRGPGAPRGAAGKIREQRRQFGRRSSPQGAPRRVGKEQFVGKEQFVGKEQFVGKEQFVGKEQFVGKEQFVGKEQYVGKEQYVGKEQYVPPRSPK
SIO_010081: LARP4
subclass of: SO_0000673
so part of: LARP4
location: join(708417..708467,708672..708819,709918..710076,710389..710464,710826..710962,711192..711295,712250..712360,712699..712752,713356..713565,714011..714114,717569..717793,718444..718492,718693..718851,719352..719470,720271..720436,720553..721035)
location: region:708417-721035:1
so has part: feature:708417-708467:1:exon
so has part: feature:708672-708819:1:exon
so has part: feature:709918-710076:1:exon
so has part: feature:710389-710464:1:exon
so has part: feature:710826-710962:1:exon
so has part: feature:711192-711295:1:exon
so has part: feature:712250-712360:1:exon
so has part: feature:712699-712752:1:exon
so has part: feature:713356-713565:1:exon
so has part: feature:714011-714114:1:exon
so has part: feature:717569-717793:1:exon
so has part: feature:718444-718492:1:exon
so has part: feature:718693-718851:1:exon
so has part: feature:719352-719470:1:exon
so has part: feature:720271-720436:1:exon
so has part: feature:720553-721035:1:exon

XP_030115197.3
type: Protein
SIO_000068: ncbiprotein

position:708417:1
position: 708417
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:708417-708467:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:708672-708819:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:709918-710076:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:710389-710464:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:710826-710962:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:711192-711295:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:712250-712360:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:712699-712752:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:713356-713565:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:714011-714114:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:717569-717793:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:718444-718492:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:718693-718851:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:719352-719470:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:720271-720436:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:720553-721035:1:exon

LARP4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: LARP4
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: la-related protein 4 isoform X1
translation: MLSDVNKERLKATLLMEQVTSKGAGLNPNAKVWQEVPQGSAEAVPPTNGTEQTWQETAAAQGTPAEGNIEISEDSCKQYEVMYSPACEAPRNGTGVDEASANGIVLATEDLGYQIYEVSGDGSSAVSTEDIRECLRKQLEFCFSRENLSKDLYLMSQMDSDQFVPIWTIANMEGIKKLTTDMDLILEVLRSSPMVQVDERGEKVRPNHKRCIIILREIPETTPIEEVKALFKNENCPKVISCEFAHNNNWYVTFQSDTDAQQAFKYLREEVKTFQGKPVMARIKAINTFFAKNGYRVVDSSVYPQPVQTQAQFASPLFMQPVYSPQQYSIYSIVPQTWSPNPAPYFETPLAPFPNGGFVNGFNTPGSYKTNAASLSIGRPFHRNRVKPHFRSSSSSEHPEGPPGAGALPMGDLGRTSSRSFVMERHSSSLTGHPEQGYAQKDPPTAQLEQNGDFGVGRGRRNVFRGRRRREDDRVSRPQPSAETKTQTPKFDLLASNFPPLPGSTAKILGEPVLESRMSDIVKGVCKEKESKDSLCPCPAPAPEEQTPSAVQPVPSVSSPSQAEPVLLSTVQPESKPEVSAPKDVASPASPPASVCPISAAKPARTNTSSPSAQASAAPALSAQEPRKLSYAEVCQKPPKEPPPVPVQPLREHRTNIVPPAKNEDNGTAEKAPEKAPHERPEARMKDFPGFRGPGAPRGAAGKIREQRRQFGRRSSPQGAPRRVGKEQFVGKEQFVGKEQFVGKEQFVGKEQFVGKEQFVGKEQYVGKEQYVGKEQYVPPRSPK
SIO_010081: LARP4
subclass of: SO_0000673
so part of: LARP4
location: join(708417..708467,708672..708819,709918..710076,710389..710464,710826..710962,711192..711295,712250..712360,712699..712752,713356..713565,714011..714114,717569..717793,718444..718492,718693..718851,719352..719470,720271..720436,720553..721035)
location: region:708417-721035:1
so has part: feature:708417-708467:1:exon
so has part: feature:708672-708819:1:exon
so has part: feature:709918-710076:1:exon
so has part: feature:710389-710464:1:exon
so has part: feature:710826-710962:1:exon
so has part: feature:711192-711295:1:exon
so has part: feature:712250-712360:1:exon
so has part: feature:712699-712752:1:exon
so has part: feature:713356-713565:1:exon
so has part: feature:714011-714114:1:exon
so has part: feature:717569-717793:1:exon
so has part: feature:718444-718492:1:exon
so has part: feature:718693-718851:1:exon
so has part: feature:719352-719470:1:exon
so has part: feature:720271-720436:1:exon
so has part: feature:720553-721035:1:exon

XP_041567571.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:708417-708467:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:708672-708819:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:709918-710076:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:710389-710464:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:710826-710962:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:711192-711295:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:712250-712360:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:712699-712752:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:713356-713565:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:714011-714114:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:717569-717793:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:718444-718492:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:718693-718851:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:719352-719470:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:720271-720436:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:720553-721035:1:exon

LARP4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: LARP4
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: la-related protein 4 isoform X2
translation: MLSDVNKERLKATLLMEVTSKGAGLNPNAKVWQEVPQGSAEAVPPTNGTEQTWQETAAAQGTPAEGNIEISEDSCKQYEVMYSPACEAPRNGTGVDEASANGIVLATEDLGYQIYEVSGDGSSAVSTEDIRECLRKQLEFCFSRENLSKDLYLMSQMDSDQFVPIWTIANMEGIKKLTTDMDLILEVLRSSPMVQVDERGEKVRPNHKRCIIILREIPETTPIEEVKALFKNENCPKVISCEFAHNNNWYVTFQSDTDAQQAFKYLREEVKTFQGKPVMARIKAINTFFAKNGYRVVDSSVYPQPVQTQAQFASPLFMQPVYSPQQYSIYSIVPQTWSPNPAPYFETPLAPFPNGGFVNGFNTPGSYKTNAASLSIGRPFHRNRVKPHFRSSSSSEHPEGPPGAGALPMGDLGRTSSRSFVMERHSSSLTGHPEQGYAQKDPPTAQLEQNGDFGVGRGRRNVFRGRRRREDDRVSRPQPSAETKTQTPKFDLLASNFPPLPGSTAKILGEPVLESRMSDIVKGVCKEKESKDSLCPCPAPAPEEQTPSAVQPVPSVSSPSQAEPVLLSTVQPESKPEVSAPKDVASPASPPASVCPISAAKPARTNTSSPSAQASAAPALSAQEPRKLSYAEVCQKPPKEPPPVPVQPLREHRTNIVPPAKNEDNGTAEKAPEKAPHERPEARMKDFPGFRGPGAPRGAAGKIREQRRQFGRRSSPQGAPRRVGKEQFVGKEQFVGKEQFVGKEQFVGKEQFVGKEQFVGKEQYVGKEQYVGKEQYVPPRSPK
SIO_010081: LARP4
subclass of: SO_0000673
so part of: LARP4
location: join(708417..708467,708675..708819,709918..710076,710389..710464,710826..710962,711192..711295,712250..712360,712699..712752,713356..713565,714011..714114,717569..717793,718444..718492,718693..718851,719352..719470,720271..720436,720553..721035)
location: region:708417-721035:1
so has part: feature:708417-708467:1:exon
so has part: feature:708675-708819:1:exon
so has part: feature:709918-710076:1:exon
so has part: feature:710389-710464:1:exon
so has part: feature:710826-710962:1:exon
so has part: feature:711192-711295:1:exon
so has part: feature:712250-712360:1:exon
so has part: feature:712699-712752:1:exon
so has part: feature:713356-713565:1:exon
so has part: feature:714011-714114:1:exon
so has part: feature:717569-717793:1:exon
so has part: feature:718444-718492:1:exon
so has part: feature:718693-718851:1:exon
so has part: feature:719352-719470:1:exon
so has part: feature:720271-720436:1:exon
so has part: feature:720553-721035:1:exon

XP_030115198.3
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:708417-708467:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:708675-708819:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:709918-710076:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:710389-710464:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:710826-710962:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:711192-711295:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:712250-712360:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:712699-712752:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:713356-713565:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:714011-714114:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:717569-717793:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:718444-718492:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:718693-718851:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:719352-719470:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:720271-720436:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:720553-721035:1:exon

LARP4
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: LARP4
product: La ribonucleoprotein 4, transcript variant X6
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 ESTs, 11 long SRA reads, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
transcript id: XM_041711639.1
SIO_010081: LARP4
subclass of: SO_0000673
so part of: LARP4
location: join(708867..709812,709918..710076,710389..710464,710826..710962,711192..711295,712250..712360,712699..712752,713356..713565,714011..714114,717569..717793,718444..718492,718693..718851,719352..719470,720271..720436,720553..725114)
location: region:708867-725114:1
so has part: feature:708867-709812:1:exon
so has part: feature:709918-710076:1:exon
so has part: feature:710389-710464:1:exon
so has part: feature:710826-710962:1:exon
so has part: feature:711192-711295:1:exon
so has part: feature:712250-712360:1:exon
so has part: feature:712699-712752:1:exon
so has part: feature:713356-713565:1:exon
so has part: feature:714011-714114:1:exon
so has part: feature:717569-717793:1:exon
so has part: feature:718444-718492:1:exon
so has part: feature:718693-718851:1:exon
so has part: feature:719352-719470:1:exon
so has part: feature:720271-720436:1:exon
so has part: feature:720553-725114:1:exon

position:708867:1
position: 708867
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:708867-709812:1:exon

position:709812:1
position: 709812
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:709918-710076:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:710389-710464:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:710826-710962:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:711192-711295:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:712250-712360:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:712699-712752:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:713356-713565:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:714011-714114:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:717569-717793:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:718444-718492:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:718693-718851:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:719352-719470:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:720271-720436:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:720553-725114:1:exon

LARP4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: LARP4
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: la-related protein 4 isoform X4
translation: MYSPACEAPRNGTGVDEASANGIVLATEDLGYQIYEVSGDGSSAVSTEDIRECLRKQLEFCFSRENLSKDLYLMSQMDSDQFVPIWTIANMEGIKKLTTDMDLILEVLRSSPMVQVDERGEKVRPNHKRCIIILREIPETTPIEEVKALFKNENCPKVISCEFAHNNNWYVTFQSDTDAQQAFKYLREEVKTFQGKPVMARIKAINTFFAKNGYRVVDSSVYPQPVQTQAQFASPLFMQPVYSPQQYSIYSIVPQTWSPNPAPYFETPLAPFPNGGFVNGFNTPGSYKTNAASLSIGRPFHRNRVKPHFRSSSSSEHPEGPPGAGALPMGDLGRTSSRSFVMERHSSSLTGHPEQGYAQKDPPTAQLEQNGDFGVGRGRRNVFRGRRRREDDRVSRPQPSAETKTQTPKFDLLASNFPPLPGSTAKILGEPVLESRMSDIVKGVCKEKESKDSLCPCPAPAPEEQTPSAVQPVPSVSSPSQAEPVLLSTVQPESKPEVSAPKDVASPASPPASVCPISAAKPARTNTSSPSAQASAAPALSAQEPRKLSYAEVCQKPPKEPPPVPVQPLREHRTNIVPPAKNEDNGTAEKAPEKAPHERPEARMKDFPGFRGPGAPRGAAGKIREQRRQFGRRSSPQGAPRRVGKEQFVGKEQFVGKEQFVGKEQFVGKEQFVGKEQFVGKEQYVGKEQYVGKEQYVPPRSPK
SIO_010081: LARP4
subclass of: SO_0000673
so part of: LARP4
location: join(709962..710076,710389..710464,710826..710962,711192..711295,712250..712360,712699..712752,713356..713565,714011..714114,717569..717793,718444..718492,718693..718851,719352..719470,720271..720436,720553..721035)
location: region:709962-721035:1
so has part: feature:709962-710076:1:exon
so has part: feature:710389-710464:1:exon
so has part: feature:710826-710962:1:exon
so has part: feature:711192-711295:1:exon
so has part: feature:712250-712360:1:exon
so has part: feature:712699-712752:1:exon
so has part: feature:713356-713565:1:exon
so has part: feature:714011-714114:1:exon
so has part: feature:717569-717793:1:exon
so has part: feature:718444-718492:1:exon
so has part: feature:718693-718851:1:exon
so has part: feature:719352-719470:1:exon
so has part: feature:720271-720436:1:exon
so has part: feature:720553-721035:1:exon

XP_041567572.1
type: Protein
SIO_000068: ncbiprotein

position:709962:1
position: 709962
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:709962-710076:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:710389-710464:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:710826-710962:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:711192-711295:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:712250-712360:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:712699-712752:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:713356-713565:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:714011-714114:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:717569-717793:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:718444-718492:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:718693-718851:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:719352-719470:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:720271-720436:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:720553-721035:1:exon

LARP4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: LARP4
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: la-related protein 4 isoform X4
translation: MYSPACEAPRNGTGVDEASANGIVLATEDLGYQIYEVSGDGSSAVSTEDIRECLRKQLEFCFSRENLSKDLYLMSQMDSDQFVPIWTIANMEGIKKLTTDMDLILEVLRSSPMVQVDERGEKVRPNHKRCIIILREIPETTPIEEVKALFKNENCPKVISCEFAHNNNWYVTFQSDTDAQQAFKYLREEVKTFQGKPVMARIKAINTFFAKNGYRVVDSSVYPQPVQTQAQFASPLFMQPVYSPQQYSIYSIVPQTWSPNPAPYFETPLAPFPNGGFVNGFNTPGSYKTNAASLSIGRPFHRNRVKPHFRSSSSSEHPEGPPGAGALPMGDLGRTSSRSFVMERHSSSLTGHPEQGYAQKDPPTAQLEQNGDFGVGRGRRNVFRGRRRREDDRVSRPQPSAETKTQTPKFDLLASNFPPLPGSTAKILGEPVLESRMSDIVKGVCKEKESKDSLCPCPAPAPEEQTPSAVQPVPSVSSPSQAEPVLLSTVQPESKPEVSAPKDVASPASPPASVCPISAAKPARTNTSSPSAQASAAPALSAQEPRKLSYAEVCQKPPKEPPPVPVQPLREHRTNIVPPAKNEDNGTAEKAPEKAPHERPEARMKDFPGFRGPGAPRGAAGKIREQRRQFGRRSSPQGAPRRVGKEQFVGKEQFVGKEQFVGKEQFVGKEQFVGKEQFVGKEQYVGKEQYVGKEQYVPPRSPK
SIO_010081: LARP4
subclass of: SO_0000673
so part of: LARP4
location: join(709962..710076,710389..710464,710826..710962,711192..711295,712250..712360,712699..712752,713356..713565,714011..714114,717569..717793,718444..718492,718693..718851,719352..719470,720271..720436,720553..721035)
location: region:709962-721035:1
so has part: feature:709962-710076:1:exon
so has part: feature:710389-710464:1:exon
so has part: feature:710826-710962:1:exon
so has part: feature:711192-711295:1:exon
so has part: feature:712250-712360:1:exon
so has part: feature:712699-712752:1:exon
so has part: feature:713356-713565:1:exon
so has part: feature:714011-714114:1:exon
so has part: feature:717569-717793:1:exon
so has part: feature:718444-718492:1:exon
so has part: feature:718693-718851:1:exon
so has part: feature:719352-719470:1:exon
so has part: feature:720271-720436:1:exon
so has part: feature:720553-721035:1:exon

XP_041567573.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:709962-710076:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:710389-710464:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:710826-710962:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:711192-711295:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:712250-712360:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:712699-712752:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:713356-713565:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:714011-714114:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:717569-717793:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:718444-718492:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:718693-718851:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:719352-719470:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:720271-720436:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:720553-721035:1:exon

DIP2B
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: DIP2B
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 752074..788512
location: region:752074-788512:1
so has part: feature:752074-788512:1:exon
subclass of: SO_0000010

115491372
type: Gene
SIO_000068: ncbigene

position:752074:1
position: 752074
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:788512:1
position: 788512
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:752074-788512:1:exon

DIP2B
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: DIP2B
product: disco interacting protein 2 homolog B
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 12 ESTs, 5 long SRA reads, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 60 samples with support for all annotated introns
transcript id: XM_041711483.1
SIO_010081: DIP2B
subclass of: SO_0000673
so part of: DIP2B
location: join(752074..752142,756477..756623,756877..757002,759404..759616,761866..762009,762509..762628,763483..763680,763878..763969,764349..764441,765651..765774,766274..766383,767375..767477,768427..768491,768988..769081,769790..769909,770491..770605,771154..771293,771497..771633,771917..771997,772113..772240,772962..773076,774014..774215,774543..774652,774768..774848,775398..775521,775862..775983,777081..777192,777630..777739,778830..778960,779619..779787,780719..780889,781879..781940,782073..782130,782639..782713,783702..783879,784574..784697,785149..788512)
location: region:752074-788512:1
so has part: feature:752074-752142:1:exon
so has part: feature:756477-756623:1:exon
so has part: feature:756877-757002:1:exon
so has part: feature:759404-759616:1:exon
so has part: feature:761866-762009:1:exon
so has part: feature:762509-762628:1:exon
so has part: feature:763483-763680:1:exon
so has part: feature:763878-763969:1:exon
so has part: feature:764349-764441:1:exon
so has part: feature:765651-765774:1:exon
so has part: feature:766274-766383:1:exon
so has part: feature:767375-767477:1:exon
so has part: feature:768427-768491:1:exon
so has part: feature:768988-769081:1:exon
so has part: feature:769790-769909:1:exon
so has part: feature:770491-770605:1:exon
so has part: feature:771154-771293:1:exon
so has part: feature:771497-771633:1:exon
so has part: feature:771917-771997:1:exon
so has part: feature:772113-772240:1:exon
so has part: feature:772962-773076:1:exon
so has part: feature:774014-774215:1:exon
so has part: feature:774543-774652:1:exon
so has part: feature:774768-774848:1:exon
so has part: feature:775398-775521:1:exon
so has part: feature:775862-775983:1:exon
so has part: feature:777081-777192:1:exon
so has part: feature:777630-777739:1:exon
so has part: feature:778830-778960:1:exon
so has part: feature:779619-779787:1:exon
so has part: feature:780719-780889:1:exon
so has part: feature:781879-781940:1:exon
so has part: feature:782073-782130:1:exon
so has part: feature:782639-782713:1:exon
so has part: feature:783702-783879:1:exon
so has part: feature:784574-784697:1:exon
so has part: feature:785149-788512:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:752074-752142:1:exon

position:752142:1
position: 752142
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:756477-756623:1:exon

position:756477:1
position: 756477
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:756623:1
position: 756623
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:756877-757002:1:exon

position:756877:1
position: 756877
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:757002:1
position: 757002
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:759404-759616:1:exon

position:759404:1
position: 759404
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:759616:1
position: 759616
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:761866-762009:1:exon

position:761866:1
position: 761866
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:762009:1
position: 762009
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:762509-762628:1:exon

position:762509:1
position: 762509
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:762628:1
position: 762628
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:763483-763680:1:exon

position:763483:1
position: 763483
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:763680:1
position: 763680
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:763878-763969:1:exon